AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055722


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055722.t1 MTR_7g088340 99.461 371 2 0 1 371 33 403 0.0 768
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055722.t1 AT3G56940 91.117 349 31 0 23 371 61 409 0.0 671
MS.gene055722.t1 AT3G56940 91.566 332 28 0 40 371 1 332 0.0 640

Find 77 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGGAACAAGGAGTTTA+AGG 0.155204 7.4:+20052246 MS.gene055722:CDS
ACATATTTGTCTGAGAAAAT+TGG 0.198268 7.4:+20053173 MS.gene055722:CDS
TGTAGCATAGAAAATAAATT+TGG 0.215744 7.4:-20053153 None:intergenic
CTTCAAACTCATCTTCATTA+AGG 0.226003 7.4:-20052180 None:intergenic
TCCAACTTTCGCTTGAACTC+TGG 0.251065 7.4:-20054162 None:intergenic
GGGTTTATCTGATTTCAATT+TGG 0.291421 7.4:+20053079 MS.gene055722:CDS
TTGTTTGAGATGTCTGTATA+TGG 0.316017 7.4:-20053213 None:intergenic
CACCAATAGCAAGAATCTTC+TGG 0.328187 7.4:-20054203 None:intergenic
TGCCCTGGTGTCTGAGCTCT+TGG 0.335522 7.4:+20054278 MS.gene055722:CDS
TGTCAAAAGGGTTTCTTTGA+TGG 0.359839 7.4:-20052092 None:intergenic
TGAGTTTGAAGCTTTGCTTC+AGG 0.359858 7.4:+20052192 MS.gene055722:CDS
AACCAGAAGATTCTTGCTAT+TGG 0.362875 7.4:+20054201 MS.gene055722:CDS
CCAACTTTCGCTTGAACTCT+GGG 0.378768 7.4:-20054161 None:intergenic
CAGTAGTGAAGAACTTTAAG+AGG 0.381376 7.4:+20054241 MS.gene055722:CDS
TTTCAATTTGGCATTGGACT+TGG 0.383087 7.4:+20053091 MS.gene055722:CDS
ACAGATTTCTATGAAGGAAT+TGG 0.383574 7.4:+20053878 MS.gene055722:CDS
AGATTTCCCCGAGTTTGAAC+GGG 0.384488 7.4:+20054338 MS.gene055722:CDS
CTCCATGCCTGTTCTCATCT+TGG 0.390251 7.4:-20053286 None:intergenic
TCTTGTACTGCTGAATTCTC+TGG 0.393467 7.4:+20052328 MS.gene055722:CDS
TGTTAATCTCAGTGTTGAAA+AGG 0.401359 7.4:-20052153 None:intergenic
GTAGCATAGAAAATAAATTT+GGG 0.422678 7.4:-20053152 None:intergenic
TTCTCAACATCAAGTACAGC+TGG 0.433804 7.4:-20054138 None:intergenic
TCTACGGATCCTGACTCAAT+TGG 0.440457 7.4:-20054318 None:intergenic
TGTCTGAGAAAATTGGATAC+TGG 0.442138 7.4:+20053180 MS.gene055722:CDS
AGAGCTTGGAAGGAGGCTTA+AGG 0.444337 7.4:+20052366 MS.gene055722:CDS
GTCTCGCTTCTTCTGTCTAT+CGG 0.446676 7.4:+20053373 MS.gene055722:CDS
GGAAAATCCTCGCAGTTGTT+CGG 0.448271 7.4:-20054116 None:intergenic
TTCAATTTGGCATTGGACTT+GGG 0.448463 7.4:+20053092 MS.gene055722:CDS
ATCTGATTTCAATTTGGCAT+TGG 0.448946 7.4:+20053085 MS.gene055722:CDS
TGTAGAATCTTGGTGTCAAA+AGG 0.453485 7.4:-20052105 None:intergenic
CAACGCACAGATTTCTATGA+AGG 0.458953 7.4:+20053872 MS.gene055722:CDS
GTTGAAGTTGGTGTTGCTGT+TGG 0.460880 7.4:-20052040 None:intergenic
GAAGCTGCTGATAAACTTGA+TGG 0.462581 7.4:+20052268 MS.gene055722:CDS
GATTCCACTGATTGCTGCCC+TGG 0.462886 7.4:+20054263 MS.gene055722:CDS
ACTGGTGCCAAGATGAGAAC+AGG 0.463603 7.4:+20053279 MS.gene055722:CDS
GAGAAAATCTCAGCCACCAC+AGG 0.468845 7.4:-20052858 None:intergenic
AAATCAGTGGTGTAGAATCT+TGG 0.471193 7.4:-20052115 None:intergenic
TGACATGCATGTCATAATTG+AGG 0.472656 7.4:+20053919 MS.gene055722:CDS
TTTCTTCTCTACAAAGAGCT+TGG 0.477727 7.4:+20052352 MS.gene055722:CDS
TTCTCTACAAAGAGCTTGGA+AGG 0.481464 7.4:+20052356 MS.gene055722:CDS
CAGCCAAGAGCTCAGACACC+AGG 0.485992 7.4:-20054281 None:intergenic
GTTAATCTCAGTGTTGAAAA+GGG 0.488825 7.4:-20052152 None:intergenic
TCAACAAAGATCTGTCTAAG+AGG 0.488967 7.4:-20052292 None:intergenic
AGGGATGAAGCTAGGCATGC+AGG 0.489165 7.4:+20052891 MS.gene055722:CDS
CTGATGAAACCAATTGAGTC+AGG 0.490154 7.4:+20054309 MS.gene055722:CDS
AGCCACAATTTCTCAATGAC+TGG 0.497869 7.4:+20053336 MS.gene055722:CDS
CCCAGAGTTCAAGCGAAAGT+TGG 0.508424 7.4:+20054161 MS.gene055722:CDS
TAGATTTCCCCGAGTTTGAA+CGG 0.508881 7.4:+20054337 MS.gene055722:CDS
TTCAAACTCGGGGAAATCTA+CGG 0.515786 7.4:-20054334 None:intergenic
TTCCAGTCATTGAGAAATTG+TGG 0.534558 7.4:-20053338 None:intergenic
TCTGGTTTATCACCACCATC+CGG 0.544659 7.4:-20054185 None:intergenic
CAAGCGAAAGTTGGACCGGA+TGG 0.565023 7.4:+20054170 MS.gene055722:CDS
GGGATGAAGCTAGGCATGCA+GGG 0.572923 7.4:+20052892 MS.gene055722:CDS
GTAGAATCTTGGTGTCAAAA+GGG 0.573111 7.4:-20052104 None:intergenic
AATCTCAGCCACCACAGGGT+TGG 0.573147 7.4:-20052853 None:intergenic
AGTTCAAGCGAAAGTTGGAC+CGG 0.578756 7.4:+20054166 MS.gene055722:CDS
TCTTTGTTGAGTTTCTTGAG+AGG 0.592113 7.4:+20052305 MS.gene055722:CDS
AGCCAAGAGCTCAGACACCA+GGG 0.597779 7.4:-20054280 None:intergenic
TGCCAAGATGAGAACAGGCA+TGG 0.599459 7.4:+20053284 MS.gene055722:CDS
ACAATTTCTCAATGACTGGA+AGG 0.599992 7.4:+20053340 MS.gene055722:CDS
GCGAAAGTTGGACCGGATGG+TGG 0.602636 7.4:+20054173 MS.gene055722:CDS
GATTTCCCCGAGTTTGAACG+GGG 0.602852 7.4:+20054339 MS.gene055722:CDS
CAACAAAGATCTGTCTAAGA+GGG 0.606400 7.4:-20052291 None:intergenic
TTGACAATCATTCAGATACA+TGG 0.607400 7.4:-20053852 None:intergenic
TGATGTCTAGGGATGAAGCT+AGG 0.613465 7.4:+20052883 MS.gene055722:CDS
CTCCATTTCATCAAAATCAG+TGG 0.613687 7.4:-20052128 None:intergenic
ATGGGATAACATTGGTACTG+AGG 0.630813 7.4:-20053239 None:intergenic
GGACTTGGGATTCTTGACAA+AGG 0.631481 7.4:+20053106 MS.gene055722:CDS
GACACCAGGGCAGCAATCAG+TGG 0.632610 7.4:-20054267 None:intergenic
TCTCAACATCAAGTACAGCT+GGG 0.645846 7.4:-20054137 None:intergenic
TCTACAAAGAGCTTGGAAGG+AGG 0.650294 7.4:+20052359 MS.gene055722:CDS
AGAAAATCTCAGCCACCACA+GGG 0.658199 7.4:-20052857 None:intergenic
GCAGAAAACCAACCCTGTGG+TGG 0.678370 7.4:+20052845 MS.gene055722:intron
ATGACTGGAAGGCTAAGTTG+TGG 0.703656 7.4:+20053351 MS.gene055722:CDS
AGACAAACCGAACAACTGCG+AGG 0.761394 7.4:+20054109 MS.gene055722:intron
ATTTCCCCGAGTTTGAACGG+GGG 0.763129 7.4:+20054340 MS.gene055722:CDS
ATGGCAGAAAACCAACCCTG+TGG 0.808273 7.4:+20052842 MS.gene055722:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATATTAATAATTTCA+GGG + chr7.4:20052548-20052567 MS.gene055722:intron 10.0%
!!! TTTGAAATATTAATAATTTC+AGG + chr7.4:20052547-20052566 MS.gene055722:intron 10.0%
!!! AAGCTAATAAATTTTGAAAT+AGG + chr7.4:20052487-20052506 MS.gene055722:intron 15.0%
!! AAAAGAATATACGTTAGTTA+CGG + chr7.4:20052991-20053010 MS.gene055722:intron 20.0%
!! ATTGTAAATTTGCAATTTCA+AGG + chr7.4:20052519-20052538 MS.gene055722:intron 20.0%
!! GTAGCATAGAAAATAAATTT+GGG - chr7.4:20053155-20053174 None:intergenic 20.0%
!! TGTAGCATAGAAAATAAATT+TGG - chr7.4:20053156-20053175 None:intergenic 20.0%
!! TTGTAAATTTGCAATTTCAA+GGG + chr7.4:20052520-20052539 MS.gene055722:intron 20.0%
!! TTTCAACTTAAGAAACTTAA+AGG - chr7.4:20053436-20053455 None:intergenic 20.0%
!!! TATTCTTTTGATTTATATGC+AGG + chr7.4:20053045-20053064 MS.gene055722:intron 20.0%
!!! TTCTCAAAGTACTTAAAAAT+GGG - chr7.4:20053260-20053279 None:intergenic 20.0%
!!! TTGATAACTATGTTTAAGTA+GGG - chr7.4:20053809-20053828 None:intergenic 20.0%
!!! TTTGATAACTATGTTTAAGT+AGG - chr7.4:20053810-20053829 None:intergenic 20.0%
! AAATCATAGATTTAGCAACT+TGG + chr7.4:20052458-20052477 MS.gene055722:intron 25.0%
! ACATATTTGTCTGAGAAAAT+TGG + chr7.4:20053173-20053192 MS.gene055722:CDS 25.0%
! ACTTAAAAATGGGATAACAT+TGG - chr7.4:20053250-20053269 None:intergenic 25.0%
! AGTTACTGTTATAAACACTT+AGG + chr7.4:20054000-20054019 MS.gene055722:intron 25.0%
! TCTCTGTCAAATTAAAGTAA+TGG + chr7.4:20053970-20053989 MS.gene055722:intron 25.0%
!! ACAATCAAACTCATTTTGTT+AGG + chr7.4:20052230-20052249 MS.gene055722:CDS 25.0%
!! ATATGCAGGTTTTTGAATAA+GGG + chr7.4:20053059-20053078 MS.gene055722:intron 25.0%
!! GTTCTCAAAGTACTTAAAAA+TGG - chr7.4:20053261-20053280 None:intergenic 25.0%
!! TATATGCAGGTTTTTGAATA+AGG + chr7.4:20053058-20053077 MS.gene055722:intron 25.0%
!!! CAGTTCTTTGAACTTTTTTT+TGG + chr7.4:20052607-20052626 MS.gene055722:intron 25.0%
!!! TTTTTAAGTACTTTGAGAAC+TGG + chr7.4:20053261-20053280 MS.gene055722:CDS 25.0%
ACAGATTTCTATGAAGGAAT+TGG + chr7.4:20053878-20053897 MS.gene055722:CDS 30.0%
AGTTATCAAATTTGTGTTGC+AGG + chr7.4:20053820-20053839 MS.gene055722:intron 30.0%
ATATTGCATGGGATTTGAAA+TGG + chr7.4:20052823-20052842 MS.gene055722:intron 30.0%
ATCTGATTTCAATTTGGCAT+TGG + chr7.4:20053085-20053104 MS.gene055722:CDS 30.0%
CAAGAAAAATGTGATCTCTT+TGG - chr7.4:20053747-20053766 None:intergenic 30.0%
CATTGTCTGATATATTGCAT+GGG + chr7.4:20052812-20052831 MS.gene055722:intron 30.0%
CTTCAAACTCATCTTCATTA+AGG - chr7.4:20052183-20052202 None:intergenic 30.0%
GCTAAATTGAATGCTGAATA+AGG - chr7.4:20052422-20052441 None:intergenic 30.0%
GGGTTTATCTGATTTCAATT+TGG + chr7.4:20053079-20053098 MS.gene055722:CDS 30.0%
TAATGACCACAAACTCATAA+TGG - chr7.4:20053774-20053793 None:intergenic 30.0%
TCATTGTCTGATATATTGCA+TGG + chr7.4:20052811-20052830 MS.gene055722:intron 30.0%
TTGACAATCATTCAGATACA+TGG - chr7.4:20053855-20053874 None:intergenic 30.0%
TTGGTCTGAATAGTATGTTT+GGG + chr7.4:20052626-20052645 MS.gene055722:intron 30.0%
TTTGGTCTGAATAGTATGTT+TGG + chr7.4:20052625-20052644 MS.gene055722:intron 30.0%
! AACTCATTTTGTTAGGAACA+AGG + chr7.4:20052237-20052256 MS.gene055722:CDS 30.0%
! AGTTACTCAAGCTTCATTTT+GGG + chr7.4:20054076-20054095 MS.gene055722:intron 30.0%
! GTTAATCTCAGTGTTGAAAA+GGG - chr7.4:20052155-20052174 None:intergenic 30.0%
! TATAGACAAGTAAAAGCACA+AGG - chr7.4:20052928-20052947 None:intergenic 30.0%
! TGTTAATCTCAGTGTTGAAA+AGG - chr7.4:20052156-20052175 None:intergenic 30.0%
! TTGTTTGAGATGTCTGTATA+TGG - chr7.4:20053216-20053235 None:intergenic 30.0%
AAAAATGTGATCTCTTTGGC+TGG - chr7.4:20053743-20053762 None:intergenic 35.0%
AAATCAGTGGTGTAGAATCT+TGG - chr7.4:20052118-20052137 None:intergenic 35.0%
AACTCTAAGTACTAGGACTT+TGG + chr7.4:20052695-20052714 MS.gene055722:intron 35.0%
ACAATTTCTCAATGACTGGA+AGG + chr7.4:20053340-20053359 MS.gene055722:CDS 35.0%
ATATGTAACTCAGCACCAAT+CGG - chr7.4:20053474-20053493 None:intergenic 35.0%
ATGCAGAATCAGATTTACCT+TGG + chr7.4:20053703-20053722 MS.gene055722:intron 35.0%
CAACAAAGATCTGTCTAAGA+GGG - chr7.4:20052294-20052313 None:intergenic 35.0%
CAGTAGTGAAGAACTTTAAG+AGG + chr7.4:20054241-20054260 MS.gene055722:CDS 35.0%
CTCCATTTCATCAAAATCAG+TGG - chr7.4:20052131-20052150 None:intergenic 35.0%
GTAAATCTGATTCTGCATGT+TGG - chr7.4:20053701-20053720 None:intergenic 35.0%
TCAACAAAGATCTGTCTAAG+AGG - chr7.4:20052295-20052314 None:intergenic 35.0%
TCTTTGTTGAGTTTCTTGAG+AGG + chr7.4:20052305-20052324 MS.gene055722:CDS 35.0%
TGACATGCATGTCATAATTG+AGG + chr7.4:20053919-20053938 MS.gene055722:CDS 35.0%
TGATTGCAACTCTAAGTACT+AGG + chr7.4:20052688-20052707 MS.gene055722:intron 35.0%
TGTCAAAAGGGTTTCTTTGA+TGG - chr7.4:20052095-20052114 None:intergenic 35.0%
TGTCTGAGAAAATTGGATAC+TGG + chr7.4:20053180-20053199 MS.gene055722:CDS 35.0%
TGTCTTCCATTATGAGTTTG+TGG + chr7.4:20053765-20053784 MS.gene055722:intron 35.0%
TGTTAGGAACAAGGAGTTTA+AGG + chr7.4:20052246-20052265 MS.gene055722:CDS 35.0%
TTCCAGTCATTGAGAAATTG+TGG - chr7.4:20053341-20053360 None:intergenic 35.0%
TTGAATTTAACCACACGTGT+CGG - chr7.4:20053596-20053615 None:intergenic 35.0%
TTTCTTCTCTACAAAGAGCT+TGG + chr7.4:20052352-20052371 MS.gene055722:CDS 35.0%
! AACCAGAAGATTCTTGCTAT+TGG + chr7.4:20054201-20054220 MS.gene055722:CDS 35.0%
! AGATTTTCTCTCTGATGTCT+AGG + chr7.4:20052871-20052890 MS.gene055722:CDS 35.0%
! CAGTTACTCAAGCTTCATTT+TGG + chr7.4:20054075-20054094 MS.gene055722:intron 35.0%
! GATTTTCTCTCTGATGTCTA+GGG + chr7.4:20052872-20052891 MS.gene055722:CDS 35.0%
! TTCAATTTGGCATTGGACTT+GGG + chr7.4:20053092-20053111 MS.gene055722:CDS 35.0%
! TTTCAATTTGGCATTGGACT+TGG + chr7.4:20053091-20053110 MS.gene055722:CDS 35.0%
!! GTAGAATCTTGGTGTCAAAA+GGG - chr7.4:20052107-20052126 None:intergenic 35.0%
!! TGTAGAATCTTGGTGTCAAA+AGG - chr7.4:20052108-20052127 None:intergenic 35.0%
!!! CACCACTGATTTTGATGAAA+TGG + chr7.4:20052126-20052145 MS.gene055722:CDS 35.0%
!!! GTTTTGTTTGGTTTCTTGCT+TGG - chr7.4:20052070-20052089 None:intergenic 35.0%
!!! TCTTTGATGGCAGTTTTGTT+TGG - chr7.4:20052082-20052101 None:intergenic 35.0%
!!! TTGCTTGGTTTTGTTGAAGT+TGG - chr7.4:20052055-20052074 None:intergenic 35.0%
ACAACCAACCAACAAAGACA+CGG - chr7.4:20053650-20053669 None:intergenic 40.0%
ACCTTAACTGAGAATGCACA+TGG + chr7.4:20053504-20053523 MS.gene055722:intron 40.0%
AGCCACAATTTCTCAATGAC+TGG + chr7.4:20053336-20053355 MS.gene055722:CDS 40.0%
ATGCCTTCAACCTTAAGTGT+TGG - chr7.4:20053548-20053567 None:intergenic 40.0%
ATGGGATAACATTGGTACTG+AGG - chr7.4:20053242-20053261 None:intergenic 40.0%
ATTGAGAATCATGCAACGCA+TGG + chr7.4:20052956-20052975 MS.gene055722:intron 40.0%
CAACGCACAGATTTCTATGA+AGG + chr7.4:20053872-20053891 MS.gene055722:CDS 40.0%
CACCAATAGCAAGAATCTTC+TGG - chr7.4:20054206-20054225 None:intergenic 40.0%
CTATGTAGCACCAACACTTA+AGG + chr7.4:20053535-20053554 MS.gene055722:intron 40.0%
CTGATGAAACCAATTGAGTC+AGG + chr7.4:20054309-20054328 MS.gene055722:CDS 40.0%
GAAGCTGCTGATAAACTTGA+TGG + chr7.4:20052268-20052287 MS.gene055722:CDS 40.0%
TACTTGTTCCGTGTCTTTGT+TGG + chr7.4:20053639-20053658 MS.gene055722:intron 40.0%
TAGATTTCCCCGAGTTTGAA+CGG + chr7.4:20054337-20054356 MS.gene055722:CDS 40.0%
TCCATGTGCATTCTCAGTTA+AGG - chr7.4:20053508-20053527 None:intergenic 40.0%
TCTCAACATCAAGTACAGCT+GGG - chr7.4:20054140-20054159 None:intergenic 40.0%
TCTTGTACTGCTGAATTCTC+TGG + chr7.4:20052328-20052347 MS.gene055722:CDS 40.0%
TTCAAACTCGGGGAAATCTA+CGG - chr7.4:20054337-20054356 None:intergenic 40.0%
TTCTCAACATCAAGTACAGC+TGG - chr7.4:20054141-20054160 None:intergenic 40.0%
TTCTCTACAAAGAGCTTGGA+AGG + chr7.4:20052356-20052375 MS.gene055722:CDS 40.0%
TTGAGAATCATGCAACGCAT+GGG + chr7.4:20052957-20052976 MS.gene055722:intron 40.0%
! TCTTTGTTGGTTGGTTGTGT+CGG + chr7.4:20053652-20053671 MS.gene055722:intron 40.0%
! TGAGTTTGAAGCTTTGCTTC+AGG + chr7.4:20052192-20052211 MS.gene055722:CDS 40.0%
AGAAAATCTCAGCCACCACA+GGG - chr7.4:20052860-20052879 None:intergenic 45.0%
AGATTTCCCCGAGTTTGAAC+GGG + chr7.4:20054338-20054357 MS.gene055722:CDS 45.0%
AGTTCAAGCGAAAGTTGGAC+CGG + chr7.4:20054166-20054185 MS.gene055722:CDS 45.0%
ATGACTGGAAGGCTAAGTTG+TGG + chr7.4:20053351-20053370 MS.gene055722:CDS 45.0%
CCAACTTTCGCTTGAACTCT+GGG - chr7.4:20054164-20054183 None:intergenic 45.0%
CCAATCGGAACTAGCTATTG+AGG - chr7.4:20053459-20053478 None:intergenic 45.0%
CCTCAATAGCTAGTTCCGAT+TGG + chr7.4:20053456-20053475 MS.gene055722:intron 45.0%
GCACCAACACTTAAGGTTGA+AGG + chr7.4:20053542-20053561 MS.gene055722:intron 45.0%
GGAAAATCCTCGCAGTTGTT+CGG - chr7.4:20054119-20054138 None:intergenic 45.0%
GGACTTGGGATTCTTGACAA+AGG + chr7.4:20053106-20053125 MS.gene055722:CDS 45.0%
GTCTCGCTTCTTCTGTCTAT+CGG + chr7.4:20053373-20053392 MS.gene055722:CDS 45.0%
TCCAACTTTCGCTTGAACTC+TGG - chr7.4:20054165-20054184 None:intergenic 45.0%
TCTACAAAGAGCTTGGAAGG+AGG + chr7.4:20052359-20052378 MS.gene055722:CDS 45.0%
TCTACGGATCCTGACTCAAT+TGG - chr7.4:20054321-20054340 None:intergenic 45.0%
TCTCTTTGGCTGGCATACTA+AGG - chr7.4:20053733-20053752 None:intergenic 45.0%
TGAGAATCATGCAACGCATG+GGG + chr7.4:20052958-20052977 MS.gene055722:intron 45.0%
TGATGTCTAGGGATGAAGCT+AGG + chr7.4:20052883-20052902 MS.gene055722:CDS 45.0%
TGGCATACTAAGGAATGCCA+AGG - chr7.4:20053723-20053742 None:intergenic 45.0%
TGTTCCGTGTCTTTGTTGGT+TGG + chr7.4:20053643-20053662 MS.gene055722:intron 45.0%
TTGGAAGGAGGCTTAAGGTT+TGG + chr7.4:20052371-20052390 MS.gene055722:intron 45.0%
! TCTGGTTTATCACCACCATC+CGG - chr7.4:20054188-20054207 None:intergenic 45.0%
!! GTTGAAGTTGGTGTTGCTGT+TGG - chr7.4:20052043-20052062 None:intergenic 45.0%
AGACAAACCGAACAACTGCG+AGG + chr7.4:20054109-20054128 MS.gene055722:intron 50.0%
AGAGCTTGGAAGGAGGCTTA+AGG + chr7.4:20052366-20052385 MS.gene055722:CDS 50.0%
ATGGCAGAAAACCAACCCTG+TGG + chr7.4:20052842-20052861 MS.gene055722:intron 50.0%
ATTTCCCCGAGTTTGAACGG+GGG + chr7.4:20054340-20054359 MS.gene055722:CDS 50.0%
CCCAGAGTTCAAGCGAAAGT+TGG + chr7.4:20054161-20054180 MS.gene055722:CDS 50.0%
CTCCATGCCTGTTCTCATCT+TGG - chr7.4:20053289-20053308 None:intergenic 50.0%
GAGAAAATCTCAGCCACCAC+AGG - chr7.4:20052861-20052880 None:intergenic 50.0%
GATTTCCCCGAGTTTGAACG+GGG + chr7.4:20054339-20054358 MS.gene055722:CDS 50.0%
TGCCAAGATGAGAACAGGCA+TGG + chr7.4:20053284-20053303 MS.gene055722:CDS 50.0%
! ACTGGTGCCAAGATGAGAAC+AGG + chr7.4:20053279-20053298 MS.gene055722:CDS 50.0%
AATCTCAGCCACCACAGGGT+TGG - chr7.4:20052856-20052875 None:intergenic 55.0%
ACAAGCCCCCGTTCAAACTC+GGG - chr7.4:20054348-20054367 None:intergenic 55.0%
AGCCAAGAGCTCAGACACCA+GGG - chr7.4:20054283-20054302 None:intergenic 55.0%
AGGGATGAAGCTAGGCATGC+AGG + chr7.4:20052891-20052910 MS.gene055722:CDS 55.0%
CAAGCGAAAGTTGGACCGGA+TGG + chr7.4:20054170-20054189 MS.gene055722:CDS 55.0%
CACAAGCCCCCGTTCAAACT+CGG - chr7.4:20054349-20054368 None:intergenic 55.0%
CTATACGACACCGACACGTG+TGG + chr7.4:20053583-20053602 MS.gene055722:intron 55.0%
GAAGCTAGGCATGCAGGGTA+AGG + chr7.4:20052897-20052916 MS.gene055722:intron 55.0%
GCAGAAAACCAACCCTGTGG+TGG + chr7.4:20052845-20052864 MS.gene055722:intron 55.0%
GGGATGAAGCTAGGCATGCA+GGG + chr7.4:20052892-20052911 MS.gene055722:CDS 55.0%
! GATTCCACTGATTGCTGCCC+TGG + chr7.4:20054263-20054282 MS.gene055722:CDS 55.0%
CAAGCCCCCGTTCAAACTCG+GGG - chr7.4:20054347-20054366 None:intergenic 60.0%
CAGCCAAGAGCTCAGACACC+AGG - chr7.4:20054284-20054303 None:intergenic 60.0%
GACACCAGGGCAGCAATCAG+TGG - chr7.4:20054270-20054289 None:intergenic 60.0%
GCGAAAGTTGGACCGGATGG+TGG + chr7.4:20054173-20054192 MS.gene055722:CDS 60.0%
TGCCCTGGTGTCTGAGCTCT+TGG + chr7.4:20054278-20054297 MS.gene055722:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 20052028 20054374 20052028 ID=MS.gene055722
chr7.4 mRNA 20052028 20054374 20052028 ID=MS.gene055722.t1;Parent=MS.gene055722
chr7.4 exon 20052028 20052387 20052028 ID=MS.gene055722.t1.exon1;Parent=MS.gene055722.t1
chr7.4 CDS 20052028 20052387 20052028 ID=cds.MS.gene055722.t1;Parent=MS.gene055722.t1
chr7.4 exon 20052849 20052913 20052849 ID=MS.gene055722.t1.exon2;Parent=MS.gene055722.t1
chr7.4 CDS 20052849 20052913 20052849 ID=cds.MS.gene055722.t1;Parent=MS.gene055722.t1
chr7.4 exon 20053067 20053394 20053067 ID=MS.gene055722.t1.exon3;Parent=MS.gene055722.t1
chr7.4 CDS 20053067 20053394 20053067 ID=cds.MS.gene055722.t1;Parent=MS.gene055722.t1
chr7.4 exon 20053842 20053940 20053842 ID=MS.gene055722.t1.exon4;Parent=MS.gene055722.t1
chr7.4 CDS 20053842 20053940 20053842 ID=cds.MS.gene055722.t1;Parent=MS.gene055722.t1
chr7.4 exon 20054111 20054374 20054111 ID=MS.gene055722.t1.exon5;Parent=MS.gene055722.t1
chr7.4 CDS 20054111 20054374 20054111 ID=cds.MS.gene055722.t1;Parent=MS.gene055722.t1
Gene Sequence

>MS.gene055722

ATGTCTGCTACTCCAACAGCAACACCAACTTCAACAAAACCAAGCAAGAAACCAAACAAAACTGCCATCAAAGAAACCCTTTTGACACCAAGATTCTACACCACTGATTTTGATGAAATGGAGACCCTTTTCAACACTGAGATTAACAAGAACCTTAATGAAGATGAGTTTGAAGCTTTGCTTCAGGAATTCAAAACTGACTACAATCAAACTCATTTTGTTAGGAACAAGGAGTTTAAGGAAGCTGCTGATAAACTTGATGGCCCTCTTAGACAGATCTTTGTTGAGTTTCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGTTTTCTTCTCTACAAAGAGCTTGGAAGGAGGCTTAAGGTTTGGTTTCTTTTCTTGATTTCTTTATAAACCTTATTCAGCATTCAATTTAGCATAATTGATAATGAGTAAATCATAGATTTAGCAACTTGGTACATGAAGCTAATAAATTTTGAAATAGGACTAATATGATTGTAAATTTGCAATTTCAAGGGTTATTTTGAAATATTAATAATTTCAGGGACTGAACTGACAACATCATACAATCTTAATGAAAAACAGTTCTTTGAACTTTTTTTTGGTCTGAATAGTATGTTTGGGAACATGCAAAGTAGTAAAAAATAACTATTTAGACAACTTTGATTGCAACTCTAAGTACTAGGACTTTGGTTTTATGACATTTTGATACTTTAATGTAATTTTGCTACATTTAATGTCTTATTAGATGCTGTTGTTCTTTATACACTTTTTTTTGTCTTCTATTCATTGTCTGATATATTGCATGGGATTTGAAATGGCAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCTAGGGATGAAGCTAGGCATGCAGGGTAAGGAAACACCTTGTGCTTTTACTTGTCTATATGTCTAGTATTGAGAATCATGCAACGCATGGGGAGAAATCGTTAAAAGAATATACGTTAGTTACGGTTTACAATTTGCTGCGTTCAGTTATTGAGCTTATTCTTTTGATTTATATGCAGGTTTTTGAATAAGGGTTTATCTGATTTCAATTTGGCATTGGACTTGGGATTCTTGACAAAGGCTAGAAAGTACACATTTTTCAAGCCCAAATTTATTTTCTATGCTACATATTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAACAAAATCCTCAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGGCATGGAGATTTCTTCTCTGCTTTGATGAAAGCACAGCCACAATTTCTCAATGACTGGAAGGCTAAGTTGTGGTCTCGCTTCTTCTGTCTATCGGTATCTTTTCTTTCTTTTGCATACACATTTTTGCTCTTCCTTTAAGTTTCTTAAGTTGAAACCTCAATAGCTAGTTCCGATTGGTGCTGAGTTACATATTACTTTACAAACCTTAACTGAGAATGCACATGGATGACAAGCTATGTAGCACCAACACTTAAGGTTGAAGGCATATCAAGTGCTGACATCTATACGACACCGACACGTGTGGTTAAATTCAATCACTTCTATTTTCTTAAATTAGTACTTGTTCCGTGTCTTTGTTGGTTGGTTGTGTCGGTGCTTCATAGATGACAAGTGTATCCAACATGCAGAATCAGATTTACCTTGGCATTCCTTAGTATGCCAGCCAAAGAGATCACATTTTTCTTGTCTTCCATTATGAGTTTGTGGTCATTATATTTTTATTAGCCCTACTTAAACATAGTTATCAAATTTGTGTTGCAGGTTTATGTCACCATGTATCTGAATGATTGTCAACGCACAGATTTCTATGAAGGAATTGGACTTAACACAAAAGAGTTTGACATGCATGTCATAATTGAGGTTAGTTTGTGTTTGCATATTCGCTATAATCTCTGTCAAATTAAAGTAATGGATCTTTGAGTTACTGTTATAAACACTTAGGATAAGTGAGAGTTGATTAACTAAGAATAAATGTTGAACTCATAAATCACAAGCAGTTACTCAAGCTTCATTTTGGGTTGTTTTTGCAGACAAACCGAACAACTGCGAGGATTTTCCCAGCTGTACTTGATGTTGAGAACCCAGAGTTCAAGCGAAAGTTGGACCGGATGGTGGTGATAAACCAGAAGATTCTTGCTATTGGTGAGAGTGATGACAATTCAGTAGTGAAGAACTTTAAGAGGATTCCACTGATTGCTGCCCTGGTGTCTGAGCTCTTGGCTGCGTATCTGATGAAACCAATTGAGTCAGGATCCGTAGATTTCCCCGAGTTTGAACGGGGGCTTGTGTACTAA

Protein sequence

>MS.gene055722.t1

MSATPTATPTSTKPSKKPNKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNEDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKQNPQYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKILAIGESDDNSVVKNFKRIPLIAALVSELLAAYLMKPIESGSVDFPEFERGLVY