Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80477.t1 | XP_024627646.1 | 78.8 | 184 | 38 | 1 | 1 | 184 | 1 | 183 | 4.60E-80 | 307.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80477.t1 | Q84WU2 | 31.0 | 142 | 87 | 4 | 30 | 171 | 50 | 180 | 5.8e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80477.t1 | A0A396GIL6 | 78.8 | 184 | 38 | 1 | 1 | 184 | 1 | 183 | 3.3e-80 | 307.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053420 | MS.gene80477 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene056224 | MS.gene80477 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene80477 | 0.811669 | 6.24E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene80477 | 0.800151 | 1.65E-48 | -1.69E-46 |
| MS.gene058173 | MS.gene80477 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene80477 | 0.811364 | 7.27E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene80477 | 0.825834 | 3.78E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80477.t1 | MTR_8g006190 | 75.362 | 138 | 33 | 1 | 47 | 184 | 1 | 137 | 3.32e-70 | 221 |
| MS.gene80477.t1 | MTR_8g006190 | 77.119 | 118 | 26 | 1 | 67 | 184 | 13 | 129 | 2.95e-58 | 191 |
| MS.gene80477.t1 | MTR_4g123750 | 47.651 | 149 | 77 | 1 | 23 | 171 | 7 | 154 | 1.38e-43 | 149 |
| MS.gene80477.t1 | MTR_5g086700 | 32.680 | 153 | 91 | 5 | 30 | 182 | 56 | 196 | 1.46e-18 | 84.7 |
| MS.gene80477.t1 | MTR_5g086700 | 32.680 | 153 | 91 | 5 | 30 | 182 | 56 | 196 | 1.53e-18 | 84.7 |
| MS.gene80477.t1 | MTR_3g079840 | 30.612 | 147 | 91 | 4 | 25 | 171 | 47 | 182 | 4.12e-17 | 80.5 |
| MS.gene80477.t1 | MTR_3g079840 | 30.612 | 147 | 91 | 4 | 25 | 171 | 46 | 181 | 4.23e-17 | 80.5 |
| MS.gene80477.t1 | MTR_1g041240 | 30.201 | 149 | 92 | 4 | 30 | 178 | 54 | 190 | 1.14e-16 | 79.3 |
| MS.gene80477.t1 | MTR_1g041240 | 30.201 | 149 | 92 | 4 | 30 | 178 | 53 | 189 | 1.15e-16 | 79.3 |
| MS.gene80477.t1 | MTR_1g041240 | 30.201 | 149 | 92 | 4 | 30 | 178 | 52 | 188 | 1.16e-16 | 79.3 |
| MS.gene80477.t1 | MTR_5g091450 | 37.143 | 105 | 60 | 2 | 53 | 157 | 48 | 146 | 4.02e-16 | 77.8 |
| MS.gene80477.t1 | MTR_5g091180 | 30.822 | 146 | 89 | 5 | 25 | 169 | 36 | 170 | 8.31e-16 | 76.6 |
| MS.gene80477.t1 | MTR_5g091550 | 35.294 | 102 | 59 | 2 | 56 | 157 | 37 | 131 | 4.07e-13 | 68.6 |
| MS.gene80477.t1 | MTR_5g091550 | 35.294 | 102 | 59 | 2 | 56 | 157 | 37 | 131 | 4.21e-13 | 68.6 |
| MS.gene80477.t1 | MTR_3g106700 | 24.242 | 165 | 113 | 4 | 23 | 181 | 394 | 552 | 1.53e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80477.t1 | AT3G17380 | 47.297 | 148 | 74 | 2 | 24 | 171 | 10 | 153 | 8.76e-38 | 134 |
| MS.gene80477.t1 | AT3G17380 | 28.966 | 145 | 94 | 4 | 29 | 173 | 169 | 304 | 8.93e-12 | 63.9 |
| MS.gene80477.t1 | AT5G26280 | 43.709 | 151 | 81 | 3 | 22 | 172 | 48 | 194 | 2.30e-36 | 131 |
| MS.gene80477.t1 | AT5G26280 | 43.709 | 151 | 81 | 3 | 22 | 172 | 67 | 213 | 4.01e-36 | 131 |
| MS.gene80477.t1 | AT5G26290 | 44.667 | 150 | 79 | 3 | 23 | 172 | 42 | 187 | 6.78e-35 | 127 |
| MS.gene80477.t1 | AT5G26260 | 39.634 | 164 | 95 | 3 | 25 | 188 | 52 | 211 | 1.51e-34 | 127 |
| MS.gene80477.t1 | AT5G26300 | 42.949 | 156 | 84 | 4 | 17 | 172 | 43 | 193 | 1.25e-33 | 124 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 3 | 140 | 1.00e-30 | 115 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 3 | 140 | 1.00e-30 | 115 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 85 | 222 | 4.96e-30 | 115 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 7.23e-30 | 115 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 7.23e-30 | 115 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 9.04e-30 | 114 |
| MS.gene80477.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 1.26e-29 | 113 |
| MS.gene80477.t1 | AT5G26320 | 34.483 | 174 | 108 | 4 | 17 | 188 | 43 | 212 | 4.24e-29 | 112 |
| MS.gene80477.t1 | AT3G20370 | 35.417 | 192 | 114 | 6 | 3 | 191 | 58 | 242 | 3.26e-27 | 107 |
| MS.gene80477.t1 | AT3G20370 | 35.417 | 192 | 114 | 6 | 3 | 191 | 36 | 220 | 3.61e-27 | 107 |
| MS.gene80477.t1 | AT3G20360 | 34.161 | 161 | 103 | 2 | 29 | 188 | 62 | 220 | 5.23e-26 | 104 |
| MS.gene80477.t1 | AT2G15710 | 38.994 | 159 | 89 | 4 | 24 | 180 | 89 | 241 | 7.00e-26 | 103 |
| MS.gene80477.t1 | AT2G04190 | 35.443 | 158 | 97 | 4 | 15 | 171 | 101 | 254 | 4.68e-25 | 102 |
| MS.gene80477.t1 | AT3G22080 | 34.177 | 158 | 98 | 3 | 26 | 179 | 12 | 167 | 7.95e-25 | 100 |
| MS.gene80477.t1 | AT4G09770 | 36.111 | 144 | 85 | 4 | 29 | 172 | 5 | 141 | 1.07e-24 | 98.6 |
| MS.gene80477.t1 | AT4G09770 | 35.570 | 149 | 89 | 4 | 24 | 172 | 26 | 167 | 1.41e-24 | 99.0 |
| MS.gene80477.t1 | AT4G09770 | 36.111 | 144 | 85 | 4 | 29 | 172 | 5 | 141 | 1.71e-24 | 99.0 |
| MS.gene80477.t1 | AT4G09770 | 36.111 | 144 | 85 | 4 | 29 | 172 | 5 | 141 | 1.71e-24 | 99.0 |
| MS.gene80477.t1 | AT4G09770 | 35.570 | 149 | 89 | 4 | 24 | 172 | 26 | 167 | 1.97e-24 | 99.4 |
| MS.gene80477.t1 | AT4G09780 | 34.899 | 149 | 91 | 4 | 24 | 172 | 53 | 195 | 3.88e-23 | 97.1 |
| MS.gene80477.t1 | AT5G26280 | 35.762 | 151 | 70 | 4 | 22 | 172 | 48 | 171 | 4.18e-23 | 95.9 |
| MS.gene80477.t1 | AT4G09780 | 34.899 | 149 | 91 | 4 | 24 | 172 | 53 | 195 | 4.89e-23 | 97.1 |
| MS.gene80477.t1 | AT3G28220 | 32.278 | 158 | 103 | 3 | 29 | 184 | 76 | 231 | 9.28e-23 | 95.5 |
| MS.gene80477.t1 | AT3G20380 | 30.864 | 162 | 109 | 2 | 23 | 184 | 76 | 234 | 2.26e-19 | 86.3 |
| MS.gene80477.t1 | AT3G22085 | 33.553 | 152 | 78 | 4 | 29 | 179 | 14 | 143 | 2.82e-18 | 82.0 |
| MS.gene80477.t1 | AT5G06600 | 28.409 | 176 | 108 | 6 | 1 | 171 | 19 | 181 | 5.14e-17 | 80.5 |
| MS.gene80477.t1 | AT5G06600 | 28.409 | 176 | 108 | 6 | 1 | 171 | 18 | 180 | 5.41e-17 | 80.5 |
| MS.gene80477.t1 | AT5G06600 | 28.409 | 176 | 108 | 6 | 1 | 171 | 19 | 181 | 5.78e-17 | 80.1 |
| MS.gene80477.t1 | AT1G65050 | 35.659 | 129 | 73 | 4 | 29 | 157 | 15 | 133 | 7.03e-17 | 75.9 |
| MS.gene80477.t1 | AT1G65050 | 35.659 | 129 | 73 | 4 | 29 | 157 | 15 | 133 | 7.03e-17 | 75.9 |
| MS.gene80477.t1 | AT1G58270 | 26.506 | 166 | 117 | 2 | 19 | 181 | 80 | 243 | 1.03e-16 | 79.0 |
| MS.gene80477.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 67 | 179 | 2.45e-16 | 78.6 |
| MS.gene80477.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 67 | 179 | 2.45e-16 | 78.6 |
| MS.gene80477.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 68 | 180 | 2.45e-16 | 78.6 |
| MS.gene80477.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 68 | 180 | 2.45e-16 | 78.6 |
| MS.gene80477.t1 | AT1G04300 | 30.657 | 137 | 82 | 4 | 36 | 172 | 70 | 193 | 1.29e-13 | 70.5 |
| MS.gene80477.t1 | AT1G65150 | 28.000 | 150 | 98 | 3 | 23 | 172 | 9 | 148 | 2.64e-13 | 68.2 |
| MS.gene80477.t1 | AT1G65150 | 28.000 | 150 | 98 | 3 | 23 | 172 | 9 | 148 | 2.64e-13 | 68.2 |
| MS.gene80477.t1 | AT1G04300 | 28.966 | 145 | 82 | 5 | 36 | 172 | 70 | 201 | 1.65e-11 | 64.3 |
| MS.gene80477.t1 | AT1G69660 | 35.294 | 85 | 51 | 2 | 107 | 189 | 14 | 96 | 3.14e-11 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTGGCCATTCTGGAAAT+TGG | 0.215930 | 6.3:-37805632 | MS.gene80477:CDS |
| GTTCTTGTGATTGGCCATTC+TGG | 0.256792 | 6.3:-37805639 | MS.gene80477:CDS |
| CGGTGGCAAGCCTCAAATAT+TGG | 0.286140 | 6.3:-37805553 | MS.gene80477:CDS |
| TTCGATCGAGCAGAAGAAAA+TGG | 0.350125 | 6.3:-37805338 | MS.gene80477:CDS |
| ATCTGCAATAGTAAGGTATA+AGG | 0.371930 | 6.3:+37805964 | None:intergenic |
| TAATGAAATGAAAACTGAAT+GGG | 0.381095 | 6.3:-37805751 | MS.gene80477:CDS |
| GAAAATGCCGTTGTCTGATC+TGG | 0.401267 | 6.3:-37806669 | None:intergenic |
| AGGCTTGCCACCGCCGGTGG+AGG | 0.409343 | 6.3:+37805563 | None:intergenic |
| ATCTGGAAAGAGTTTGTATC+CGG | 0.415813 | 6.3:-37806652 | MS.gene80477:CDS |
| GGAGCTGAAGTTCTTGTGAT+TGG | 0.415846 | 6.3:-37805648 | MS.gene80477:CDS |
| GGTGGCAAGCCTCAAATATT+GGG | 0.418440 | 6.3:-37805552 | MS.gene80477:CDS |
| GACAAGCCTCGAACAACATC+TGG | 0.423058 | 6.3:-37805588 | MS.gene80477:CDS |
| TTATATTTGTTGTAGGAAGT+TGG | 0.427408 | 6.3:-37806035 | MS.gene80477:intron |
| GAAGAAGGTACATGCGTGTT+TGG | 0.433121 | 6.3:-37805669 | MS.gene80477:CDS |
| AACAATTATTTGACCATCCA+AGG | 0.454086 | 6.3:-37805872 | MS.gene80477:intron |
| TTCCTTGGCTGTGGACGAAA+AGG | 0.458291 | 6.3:-37806207 | MS.gene80477:CDS |
| AAACAAGCTTTCTCGTGGTT+GGG | 0.458923 | 6.3:-37805939 | MS.gene80477:CDS |
| GATTGGCCATTCTGGAAATT+GGG | 0.467944 | 6.3:-37805631 | MS.gene80477:CDS |
| TGTTTGTATCTGCAATAGTA+AGG | 0.468822 | 6.3:+37805957 | None:intergenic |
| GAACTCTTTGATCCATGTAA+TGG | 0.468879 | 6.3:-37805702 | MS.gene80477:CDS |
| TCTGGCTCCTCCACCGGCGG+TGG | 0.469678 | 6.3:-37805570 | MS.gene80477:CDS |
| AAGTTTCCCAATTTCCAGAA+TGG | 0.481189 | 6.3:+37805625 | None:intergenic |
| TTAATGAAATGAAAACTGAA+TGG | 0.482655 | 6.3:-37805752 | MS.gene80477:CDS |
| CAAACAAGCTTTCTCGTGGT+TGG | 0.484063 | 6.3:-37805940 | MS.gene80477:CDS |
| GAGTCGGAGCCCAATATTTG+AGG | 0.498105 | 6.3:+37805543 | None:intergenic |
| TCATCAACGTATCCATTACA+TGG | 0.498278 | 6.3:+37805690 | None:intergenic |
| AAGCGTAAACGTGACTGATA+CGG | 0.516825 | 6.3:+37805377 | None:intergenic |
| GATGATATGTATACCTTGGA+TGG | 0.518799 | 6.3:+37805859 | None:intergenic |
| TTCAAGCTGGTGGATACTCA+TGG | 0.530987 | 6.3:-37806160 | MS.gene80477:intron |
| TTGAGGCTTGCCACCGCCGG+TGG | 0.532648 | 6.3:+37805560 | None:intergenic |
| GAGGAGCCAGATGTTGTTCG+AGG | 0.537973 | 6.3:+37805582 | None:intergenic |
| ATCTTAAACAAGTAATCAGC+TGG | 0.540985 | 6.3:+37806239 | None:intergenic |
| AATGAAATGAAAACTGAATG+GGG | 0.549309 | 6.3:-37805750 | MS.gene80477:CDS |
| TCAAGTGCTCGTTGTGGTGT+TGG | 0.553226 | 6.3:-37806620 | MS.gene80477:intron |
| GAAAATGGATGGATTAAAGA+CGG | 0.553351 | 6.3:-37805323 | MS.gene80477:CDS |
| CCACAGCCAAGGAAAACGAT+TGG | 0.561150 | 6.3:+37806216 | None:intergenic |
| ACAACATCTGGCTCCTCCAC+CGG | 0.561761 | 6.3:-37805576 | MS.gene80477:CDS |
| ATCGAGCAGAAGAAAATGGA+TGG | 0.566913 | 6.3:-37805334 | MS.gene80477:CDS |
| CAAGCTTTCTCGTGGTTGGG+AGG | 0.572497 | 6.3:-37805936 | MS.gene80477:CDS |
| TATTTGAGGCTTGCCACCGC+CGG | 0.573001 | 6.3:+37805557 | None:intergenic |
| GAGCACTTGAGGTTGGCTCC+CGG | 0.579399 | 6.3:+37806633 | None:intergenic |
| AAGTTGGTACTCTACCCAAA+TGG | 0.581141 | 6.3:-37806019 | MS.gene80477:CDS |
| TGTTGTTCGAGGCTTGTCAC+CGG | 0.581750 | 6.3:+37805593 | None:intergenic |
| GTTGCCACCGCCATCAGAGT+CGG | 0.586811 | 6.3:+37805527 | None:intergenic |
| AATGGATACGTTGATGAAGA+AGG | 0.590591 | 6.3:-37805684 | MS.gene80477:CDS |
| CCACAACGAGCACTTGAGGT+TGG | 0.599713 | 6.3:+37806626 | None:intergenic |
| ACATCTGGCTCCTCCACCGG+CGG | 0.606029 | 6.3:-37805573 | MS.gene80477:CDS |
| TTGATTACTGTAGATGCTGA+TGG | 0.622750 | 6.3:-37805789 | MS.gene80477:intron |
| TAGTAAGGTATAAGGAAACA+TGG | 0.628324 | 6.3:+37805972 | None:intergenic |
| TACTGTAGATGCTGATGGCG+TGG | 0.640979 | 6.3:-37805784 | MS.gene80477:intron |
| TTGGGCTCCGACTCTGATGG+CGG | 0.641362 | 6.3:-37805534 | MS.gene80477:intron |
| ATATTGGGCTCCGACTCTGA+TGG | 0.641420 | 6.3:-37805537 | MS.gene80477:CDS |
| AACACCACAACGAGCACTTG+AGG | 0.648489 | 6.3:+37806622 | None:intergenic |
| TTAAACAAGTAATCAGCTGG+TGG | 0.648634 | 6.3:+37806242 | None:intergenic |
| TCTGGAAAGAGTTTGTATCC+GGG | 0.648666 | 6.3:-37806651 | MS.gene80477:CDS |
| GATACAAACAAGCTTTCTCG+TGG | 0.650785 | 6.3:-37805944 | MS.gene80477:CDS |
| AATGGTAAATCAAAACGAAG+TGG | 0.657504 | 6.3:-37806001 | MS.gene80477:CDS |
| CCAACCTCAAGTGCTCGTTG+TGG | 0.696181 | 6.3:-37806626 | MS.gene80477:CDS |
| TCTGCTCGATCGAATATATG+CGG | 0.705289 | 6.3:+37805347 | None:intergenic |
| ACTCTTTCCAGATCAGACAA+CGG | 0.731328 | 6.3:+37806662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTATAAAAAAACATAA+TGG | + | chr6.3:37805490-37805509 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTATAAGAAACA+TGG | - | chr6.3:37805492-37805511 | MS.gene80477:intron | 15.0% |
| !!! | TTTTTAAGTTGTATATTTGT+CGG | + | chr6.3:37806478-37806497 | None:intergenic | 15.0% |
| !! | ACAGAAAAAATATACAACTT+AGG | + | chr6.3:37806547-37806566 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAACTGAAT+GGG | - | chr6.3:37806229-37806248 | MS.gene80477:CDS | 20.0% |
| !! | TTAATGAAATGAAAACTGAA+TGG | - | chr6.3:37806228-37806247 | MS.gene80477:CDS | 20.0% |
| !!! | TTTTGAGCAATTAATTTCAT+TGG | - | chr6.3:37806253-37806272 | MS.gene80477:CDS | 20.0% |
| ! | AATGAAATGAAAACTGAATG+GGG | - | chr6.3:37806230-37806249 | MS.gene80477:CDS | 25.0% |
| ! | TGAAATACCTGAGTTTATAT+AGG | + | chr6.3:37805700-37805719 | None:intergenic | 25.0% |
| !!! | GTTGTTGTTATATTTGTTGT+AGG | - | chr6.3:37805938-37805957 | MS.gene80477:CDS | 25.0% |
| !!! | TTATATTTGTTGTAGGAAGT+TGG | - | chr6.3:37805945-37805964 | MS.gene80477:CDS | 25.0% |
| !!! | TTCGTTTTGATTTACCATTT+GGG | + | chr6.3:37805978-37805997 | None:intergenic | 25.0% |
| AACAATTATTTGACCATCCA+AGG | - | chr6.3:37806108-37806127 | MS.gene80477:intron | 30.0% | |
| AACCATAAGGTTGTAACAAT+GGG | - | chr6.3:37805542-37805561 | MS.gene80477:CDS | 30.0% | |
| AATGGTAAATCAAAACGAAG+TGG | - | chr6.3:37805979-37805998 | MS.gene80477:CDS | 30.0% | |
| AGTAGATGATATGTATACCT+TGG | + | chr6.3:37806128-37806147 | None:intergenic | 30.0% | |
| ATCTGCAATAGTAAGGTATA+AGG | + | chr6.3:37806019-37806038 | None:intergenic | 30.0% | |
| ATCTTAAACAAGTAATCAGC+TGG | + | chr6.3:37805744-37805763 | None:intergenic | 30.0% | |
| TAGTAAGGTATAAGGAAACA+TGG | + | chr6.3:37806011-37806030 | None:intergenic | 30.0% | |
| TCATCTACCTATATAAACTC+AGG | - | chr6.3:37805690-37805709 | MS.gene80477:CDS | 30.0% | |
| TGTTTGTATCTGCAATAGTA+AGG | + | chr6.3:37806026-37806045 | None:intergenic | 30.0% | |
| !! | GAAAATGGATGGATTAAAGA+CGG | - | chr6.3:37806657-37806676 | MS.gene80477:CDS | 30.0% |
| !!! | CTTCGTTTTGATTTACCATT+TGG | + | chr6.3:37805979-37805998 | None:intergenic | 30.0% |
| AAGTTTCCCAATTTCCAGAA+TGG | + | chr6.3:37806358-37806377 | None:intergenic | 35.0% | |
| ATCTGGAAAGAGTTTGTATC+CGG | - | chr6.3:37805328-37805347 | MS.gene80477:CDS | 35.0% | |
| CAACCATAAGGTTGTAACAA+TGG | - | chr6.3:37805541-37805560 | MS.gene80477:CDS | 35.0% | |
| CATTGTTACAACCTTATGGT+TGG | + | chr6.3:37805543-37805562 | None:intergenic | 35.0% | |
| CTTACATGTTTCCTTTCGTT+CGG | - | chr6.3:37805862-37805881 | MS.gene80477:intron | 35.0% | |
| GAACGAAAGGAAACATGTAA+GGG | + | chr6.3:37805863-37805882 | None:intergenic | 35.0% | |
| GAACTCTTTGATCCATGTAA+TGG | - | chr6.3:37806278-37806297 | MS.gene80477:intron | 35.0% | |
| GATGATATGTATACCTTGGA+TGG | + | chr6.3:37806124-37806143 | None:intergenic | 35.0% | |
| TATCCTAACAACCAACCATA+AGG | - | chr6.3:37805529-37805548 | MS.gene80477:intron | 35.0% | |
| TCATCAACGTATCCATTACA+TGG | + | chr6.3:37806293-37806312 | None:intergenic | 35.0% | |
| TTAAACAAGTAATCAGCTGG+TGG | + | chr6.3:37805741-37805760 | None:intergenic | 35.0% | |
| TTGATTACTGTAGATGCTGA+TGG | - | chr6.3:37806191-37806210 | MS.gene80477:CDS | 35.0% | |
| ! | AATGGATACGTTGATGAAGA+AGG | - | chr6.3:37806296-37806315 | MS.gene80477:intron | 35.0% |
| ! | GGTTGTTAGGATATTTTGTG+TGG | + | chr6.3:37805522-37805541 | None:intergenic | 35.0% |
| ! | TAAGATCCAATCGTTTTCCT+TGG | - | chr6.3:37805758-37805777 | MS.gene80477:CDS | 35.0% |
| !!! | GAGTCAAATGTTTTTCAAGC+TGG | - | chr6.3:37805807-37805826 | MS.gene80477:intron | 35.0% |
| !!! | TCAAATGTTTTTCAAGCTGG+TGG | - | chr6.3:37805810-37805829 | MS.gene80477:intron | 35.0% |
| AAACAAGCTTTCTCGTGGTT+GGG | - | chr6.3:37806041-37806060 | MS.gene80477:intron | 40.0% | |
| AAGCGTAAACGTGACTGATA+CGG | + | chr6.3:37806606-37806625 | None:intergenic | 40.0% | |
| ACTCTTTCCAGATCAGACAA+CGG | + | chr6.3:37805321-37805340 | None:intergenic | 40.0% | |
| ATCGAGCAGAAGAAAATGGA+TGG | - | chr6.3:37806646-37806665 | MS.gene80477:CDS | 40.0% | |
| CACCCATTGTTACAACCTTA+TGG | + | chr6.3:37805547-37805566 | None:intergenic | 40.0% | |
| CGAACGAAAGGAAACATGTA+AGG | + | chr6.3:37805864-37805883 | None:intergenic | 40.0% | |
| GATACAAACAAGCTTTCTCG+TGG | - | chr6.3:37806036-37806055 | MS.gene80477:intron | 40.0% | |
| TCGGTCAATGTTTGGAAAGT+AGG | - | chr6.3:37805881-37805900 | MS.gene80477:CDS | 40.0% | |
| TCTGCTCGATCGAATATATG+CGG | + | chr6.3:37806636-37806655 | None:intergenic | 40.0% | |
| TCTGGAAAGAGTTTGTATCC+GGG | - | chr6.3:37805329-37805348 | MS.gene80477:CDS | 40.0% | |
| TTCGATCGAGCAGAAGAAAA+TGG | - | chr6.3:37806642-37806661 | MS.gene80477:CDS | 40.0% | |
| ! | CAACCTTATGGTTGGTTGTT+AGG | + | chr6.3:37805535-37805554 | None:intergenic | 40.0% |
| ! | GATTGGCCATTCTGGAAATT+GGG | - | chr6.3:37806349-37806368 | MS.gene80477:intron | 40.0% |
| ! | TGATTGGCCATTCTGGAAAT+TGG | - | chr6.3:37806348-37806367 | MS.gene80477:intron | 40.0% |
| ! | TGGGAAACTTTTGATGTGTC+CGG | - | chr6.3:37806368-37806387 | MS.gene80477:intron | 40.0% |
| !! | AAGTTGGTACTCTACCCAAA+TGG | - | chr6.3:37805961-37805980 | MS.gene80477:CDS | 40.0% |
| CAAACAAGCTTTCTCGTGGT+TGG | - | chr6.3:37806040-37806059 | MS.gene80477:intron | 45.0% | |
| CCAAACATTGACCGAACGAA+AGG | + | chr6.3:37805876-37805895 | None:intergenic | 45.0% | |
| CCTTTCGTTCGGTCAATGTT+TGG | - | chr6.3:37805873-37805892 | MS.gene80477:CDS | 45.0% | |
| GGAGCTGAAGTTCTTGTGAT+TGG | - | chr6.3:37806332-37806351 | MS.gene80477:intron | 45.0% | |
| GGTGGCAAGCCTCAAATATT+GGG | - | chr6.3:37806428-37806447 | MS.gene80477:intron | 45.0% | |
| ! | GAAGAAGGTACATGCGTGTT+TGG | - | chr6.3:37806311-37806330 | MS.gene80477:intron | 45.0% |
| ! | GTTCTTGTGATTGGCCATTC+TGG | - | chr6.3:37806341-37806360 | MS.gene80477:intron | 45.0% |
| ! | TTCAAGCTGGTGGATACTCA+TGG | - | chr6.3:37805820-37805839 | MS.gene80477:intron | 45.0% |
| AACACCACAACGAGCACTTG+AGG | + | chr6.3:37805361-37805380 | None:intergenic | 50.0% | |
| ATATTGGGCTCCGACTCTGA+TGG | - | chr6.3:37806443-37806462 | MS.gene80477:intron | 50.0% | |
| CCACAGCCAAGGAAAACGAT+TGG | + | chr6.3:37805767-37805786 | None:intergenic | 50.0% | |
| CGGTGGCAAGCCTCAAATAT+TGG | - | chr6.3:37806427-37806446 | MS.gene80477:intron | 50.0% | |
| GACAAGCCTCGAACAACATC+TGG | - | chr6.3:37806392-37806411 | MS.gene80477:intron | 50.0% | |
| GAGTCGGAGCCCAATATTTG+AGG | + | chr6.3:37806440-37806459 | None:intergenic | 50.0% | |
| TCAAGTGCTCGTTGTGGTGT+TGG | - | chr6.3:37805360-37805379 | MS.gene80477:CDS | 50.0% | |
| TGTTGTTCGAGGCTTGTCAC+CGG | + | chr6.3:37806390-37806409 | None:intergenic | 50.0% | |
| TTCCTTGGCTGTGGACGAAA+AGG | - | chr6.3:37805773-37805792 | MS.gene80477:CDS | 50.0% | |
| ! | CCAATCGTTTTCCTTGGCTG+TGG | - | chr6.3:37805764-37805783 | MS.gene80477:CDS | 50.0% |
| ! | TACTGTAGATGCTGATGGCG+TGG | - | chr6.3:37806196-37806215 | MS.gene80477:CDS | 50.0% |
| CAAGCTTTCTCGTGGTTGGG+AGG | - | chr6.3:37806044-37806063 | MS.gene80477:intron | 55.0% | |
| CACATCGCGACTAAGCGAGA+GGG | + | chr6.3:37806583-37806602 | None:intergenic | 55.0% | |
| CCAACCTCAAGTGCTCGTTG+TGG | - | chr6.3:37805354-37805373 | MS.gene80477:CDS | 55.0% | |
| CCACAACGAGCACTTGAGGT+TGG | + | chr6.3:37805357-37805376 | None:intergenic | 55.0% | |
| GAGGAGCCAGATGTTGTTCG+AGG | + | chr6.3:37806401-37806420 | None:intergenic | 55.0% | |
| ! | ACAACATCTGGCTCCTCCAC+CGG | - | chr6.3:37806404-37806423 | MS.gene80477:intron | 55.0% |
| ! | CACCTTTTCGTCCACAGCCA+AGG | + | chr6.3:37805778-37805797 | None:intergenic | 55.0% |
| ! | TATTTGAGGCTTGCCACCGC+CGG | + | chr6.3:37806426-37806445 | None:intergenic | 55.0% |
| GCACATCGCGACTAAGCGAG+AGG | + | chr6.3:37806584-37806603 | None:intergenic | 60.0% | |
| GTTGCCACCGCCATCAGAGT+CGG | + | chr6.3:37806456-37806475 | None:intergenic | 60.0% | |
| TTGGGCTCCGACTCTGATGG+CGG | - | chr6.3:37806446-37806465 | MS.gene80477:intron | 60.0% | |
| ! | GAGCACTTGAGGTTGGCTCC+CGG | + | chr6.3:37805350-37805369 | None:intergenic | 60.0% |
| ! | ACATCTGGCTCCTCCACCGG+CGG | - | chr6.3:37806407-37806426 | MS.gene80477:intron | 65.0% |
| TTGAGGCTTGCCACCGCCGG+TGG | + | chr6.3:37806423-37806442 | None:intergenic | 70.0% | |
| !! | GGCTCCGACTCTGATGGCGG+TGG | - | chr6.3:37806449-37806468 | MS.gene80477:intron | 70.0% |
| AGGCTTGCCACCGCCGGTGG+AGG | + | chr6.3:37806420-37806439 | None:intergenic | 75.0% | |
| ! | TCTGGCTCCTCCACCGGCGG+TGG | - | chr6.3:37806410-37806429 | MS.gene80477:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37805315 | 37806687 | 37805315 | ID=MS.gene80477 |
| chr6.3 | mRNA | 37805315 | 37806687 | 37805315 | ID=MS.gene80477.t1;Parent=MS.gene80477 |
| chr6.3 | exon | 37806621 | 37806687 | 37806621 | ID=MS.gene80477.t1.exon1;Parent=MS.gene80477.t1 |
| chr6.3 | CDS | 37806621 | 37806687 | 37806621 | ID=cds.MS.gene80477.t1;Parent=MS.gene80477.t1 |
| chr6.3 | exon | 37806161 | 37806290 | 37806161 | ID=MS.gene80477.t1.exon2;Parent=MS.gene80477.t1 |
| chr6.3 | CDS | 37806161 | 37806290 | 37806161 | ID=cds.MS.gene80477.t1;Parent=MS.gene80477.t1 |
| chr6.3 | exon | 37805873 | 37806042 | 37805873 | ID=MS.gene80477.t1.exon3;Parent=MS.gene80477.t1 |
| chr6.3 | CDS | 37805873 | 37806042 | 37805873 | ID=cds.MS.gene80477.t1;Parent=MS.gene80477.t1 |
| chr6.3 | exon | 37805535 | 37805798 | 37805535 | ID=MS.gene80477.t1.exon4;Parent=MS.gene80477.t1 |
| chr6.3 | CDS | 37805535 | 37805798 | 37805535 | ID=cds.MS.gene80477.t1;Parent=MS.gene80477.t1 |
| chr6.3 | exon | 37805315 | 37805409 | 37805315 | ID=MS.gene80477.t1.exon5;Parent=MS.gene80477.t1 |
| chr6.3 | CDS | 37805315 | 37805409 | 37805315 | ID=cds.MS.gene80477.t1;Parent=MS.gene80477.t1 |
| Gene Sequence |
| Protein sequence |
