AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058603


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058603.t1 MTR_7g080980 99.259 270 1 1 1 270 1 269 0.0 530
MS.gene058603.t1 MTR_4g098450 65.333 300 70 8 1 270 1 296 6.66e-94 279
MS.gene058603.t1 MTR_5g091630 55.869 213 79 3 26 224 2 213 1.02e-70 218
MS.gene058603.t1 MTR_8g036060 56.349 252 96 3 27 264 52 303 1.43e-68 214
MS.gene058603.t1 MTR_1g073860 60.680 206 68 2 48 241 84 288 1.43e-66 210
MS.gene058603.t1 MTR_1g044155 70.625 160 47 0 48 207 116 275 2.63e-66 210
MS.gene058603.t1 MTR_5g011520 70.253 158 47 0 54 211 96 253 6.20e-64 203
MS.gene058603.t1 MTR_3g068035 70.833 144 42 0 68 211 89 232 9.78e-63 200
MS.gene058603.t1 MTR_1g079810 61.850 173 58 1 58 230 74 238 9.23e-62 197
MS.gene058603.t1 MTR_3g100470 48.402 219 96 5 25 233 37 248 1.00e-57 186
MS.gene058603.t1 MTR_5g080580 53.488 172 67 1 68 226 99 270 4.77e-46 157
MS.gene058603.t1 MTR_5g066020 51.678 149 67 3 67 210 60 208 3.06e-43 147
MS.gene058603.t1 MTR_5g089600 38.323 167 87 4 43 195 61 225 1.66e-31 117
MS.gene058603.t1 MTR_5g089700 33.548 155 94 1 57 202 74 228 1.35e-23 95.9
MS.gene058603.t1 MTR_5g010330 39.726 146 81 4 58 197 104 248 3.45e-23 96.7
MS.gene058603.t1 MTR_1g032910 36.250 160 90 3 58 205 101 260 1.18e-22 94.7
MS.gene058603.t1 MTR_4g057487 30.899 178 113 3 58 225 17 194 4.65e-22 92.0
MS.gene058603.t1 MTR_1g053685 32.203 177 110 3 58 225 85 260 2.93e-21 90.9
MS.gene058603.t1 MTR_1g061530 36.000 175 102 4 88 256 144 314 4.27e-21 91.7
MS.gene058603.t1 MTR_5g089090 35.294 153 93 1 58 204 28 180 9.20e-21 87.8
MS.gene058603.t1 MTR_4g057525 32.911 158 96 3 58 205 36 193 2.85e-20 87.4
MS.gene058603.t1 MTR_1g079780 40.000 115 68 1 85 198 109 223 4.03e-20 88.6
MS.gene058603.t1 MTR_6g061670 43.103 116 63 1 85 197 130 245 4.12e-20 88.2
MS.gene058603.t1 MTR_6g061670 43.103 116 63 1 85 197 125 240 4.50e-20 88.2
MS.gene058603.t1 MTR_1g073870 40.994 161 48 4 47 207 41 154 2.21e-19 84.3
MS.gene058603.t1 MTR_1g076710 46.610 118 55 3 85 197 134 248 1.36e-18 84.3
MS.gene058603.t1 MTR_8g036160 45.614 114 58 1 88 197 145 258 6.68e-18 82.4
MS.gene058603.t1 MTR_4g098460 36.601 153 84 4 51 197 50 195 2.54e-17 80.1
MS.gene058603.t1 MTR_7g074935 52.239 67 32 0 88 154 130 196 3.86e-17 80.1
MS.gene058603.t1 MTR_5g011680 35.417 144 77 4 84 219 141 276 8.38e-17 78.6
MS.gene058603.t1 MTR_7g077120 36.301 146 87 2 58 197 127 272 1.09e-16 79.0
MS.gene058603.t1 MTR_7g116320 39.823 113 68 0 85 197 143 255 2.24e-16 78.2
MS.gene058603.t1 MTR_7g116320 39.200 125 72 1 85 205 143 267 3.10e-16 77.0
MS.gene058603.t1 MTR_8g098390 37.903 124 73 3 77 197 158 280 3.38e-16 77.8
MS.gene058603.t1 MTR_4g069110 36.842 95 60 0 58 152 34 128 7.80e-16 73.9
MS.gene058603.t1 MTR_4g098460 35.669 157 85 4 51 197 50 200 1.39e-15 75.1
MS.gene058603.t1 MTR_5g011610 37.190 121 74 1 77 197 50 168 1.54e-15 75.5
MS.gene058603.t1 MTR_8g031100 39.189 148 84 2 56 197 123 270 1.56e-15 75.9
MS.gene058603.t1 MTR_5g011620 37.391 115 70 1 83 197 113 225 2.89e-15 75.9
MS.gene058603.t1 MTR_4g055803 37.500 120 69 2 84 197 124 243 1.53e-14 73.2
MS.gene058603.t1 MTR_4g055813 38.793 116 69 2 84 197 18 133 2.14e-14 72.0
MS.gene058603.t1 MTR_4g101990 47.761 67 35 0 88 154 147 213 2.15e-14 72.4
MS.gene058603.t1 MTR_8g078930 34.127 126 73 3 89 205 5 129 4.85e-14 68.6
MS.gene058603.t1 MTR_4g055833 38.333 120 68 2 84 197 121 240 1.77e-13 69.7
MS.gene058603.t1 MTR_1g071850 35.211 142 64 3 66 207 38 151 1.13e-11 62.8
MS.gene058603.t1 MTR_1g038960 36.111 144 84 4 59 198 125 264 2.47e-11 63.5
MS.gene058603.t1 MTR_6g060670 38.739 111 66 2 88 198 180 288 4.95e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058603.t1 AT4G17800 63.487 304 59 5 1 267 1 289 4.20e-100 294
MS.gene058603.t1 AT2G35270 59.524 294 76 7 1 266 1 279 1.08e-92 275
MS.gene058603.t1 AT2G42940 54.229 201 92 0 24 224 19 219 1.01e-68 213
MS.gene058603.t1 AT4G14465 57.843 204 80 3 48 249 57 256 1.61e-65 206
MS.gene058603.t1 AT1G76500 60.317 189 61 2 30 209 49 232 3.35e-65 206
MS.gene058603.t1 AT3G60870 56.345 197 78 3 6 202 13 201 6.23e-65 204
MS.gene058603.t1 AT4G22810 72.956 159 40 1 56 211 103 261 9.28e-63 200
MS.gene058603.t1 AT4G12050 73.248 157 41 1 56 211 116 272 1.36e-62 200
MS.gene058603.t1 AT2G45430 66.111 180 52 2 56 231 87 261 2.01e-62 199
MS.gene058603.t1 AT3G04570 52.336 214 80 2 16 207 24 237 3.79e-62 198
MS.gene058603.t1 AT5G49700 51.337 187 80 3 56 231 54 240 1.16e-56 183
MS.gene058603.t1 AT1G20900 59.162 191 68 2 26 207 55 244 2.59e-52 173
MS.gene058603.t1 AT4G35390 54.419 215 85 3 58 259 63 277 3.31e-51 170
MS.gene058603.t1 AT3G55560 63.014 146 53 1 63 207 93 238 1.44e-46 158
MS.gene058603.t1 AT1G14490 47.423 194 88 5 46 228 13 203 6.61e-42 143
MS.gene058603.t1 AT1G14490 48.619 181 80 4 59 228 6 184 1.02e-41 142
MS.gene058603.t1 AT1G63470 42.282 149 73 5 58 197 147 291 3.95e-23 97.4
MS.gene058603.t1 AT2G45850 39.474 152 82 3 58 201 132 281 4.45e-22 94.4
MS.gene058603.t1 AT2G45850 39.474 152 82 3 58 201 132 281 4.45e-22 94.4
MS.gene058603.t1 AT4G12080 46.087 115 55 2 88 197 173 285 7.95e-22 93.6
MS.gene058603.t1 AT2G33620 40.994 161 84 4 57 214 136 288 8.57e-22 93.6
MS.gene058603.t1 AT2G33620 40.994 161 84 4 57 214 136 288 8.57e-22 93.6
MS.gene058603.t1 AT2G33620 40.994 161 84 4 57 214 136 288 8.57e-22 93.6
MS.gene058603.t1 AT2G33620 40.994 161 84 4 57 214 136 288 8.57e-22 93.6
MS.gene058603.t1 AT5G62260 35.795 176 91 6 37 205 123 283 1.03e-21 92.4
MS.gene058603.t1 AT5G62260 44.068 118 59 2 85 197 160 275 2.11e-21 92.8
MS.gene058603.t1 AT5G62260 44.068 118 59 2 85 197 160 275 2.11e-21 92.8
MS.gene058603.t1 AT5G51590 43.478 115 58 2 88 197 181 293 3.48e-21 92.4
MS.gene058603.t1 AT2G45850 38.255 149 82 3 58 198 132 278 1.60e-20 89.0
MS.gene058603.t1 AT4G25320 42.478 113 62 1 88 197 169 281 2.98e-20 89.7
MS.gene058603.t1 AT4G17950 40.881 159 87 3 44 197 182 338 6.21e-20 89.0
MS.gene058603.t1 AT3G04590 36.735 147 76 2 88 234 174 303 7.53e-20 87.4
MS.gene058603.t1 AT3G04590 36.735 147 76 2 88 234 174 303 7.86e-20 88.6
MS.gene058603.t1 AT3G61310 37.975 158 86 3 46 197 128 279 5.34e-17 80.1
MS.gene058603.t1 AT5G46640 41.566 166 86 5 58 219 155 313 2.26e-16 78.6
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 130 313 5.72e-16 77.0
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 130 313 5.72e-16 77.0
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 124 307 6.24e-16 77.0
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 124 307 6.24e-16 77.0
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 124 307 6.24e-16 77.0
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 124 307 6.24e-16 77.0
MS.gene058603.t1 AT1G63480 30.851 188 104 6 58 223 124 307 6.24e-16 77.0
MS.gene058603.t1 AT4G00200 46.970 66 35 0 88 153 126 191 4.07e-15 74.3
MS.gene058603.t1 AT4G00200 46.970 66 35 0 88 153 126 191 4.07e-15 74.3
MS.gene058603.t1 AT4G22770 44.595 74 41 0 81 154 146 219 2.24e-14 72.4
MS.gene058603.t1 AT4G22770 44.595 74 41 0 81 154 146 219 2.24e-14 72.4

Find 99 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTCCTTTGGTTGCTTC+TGG 0.211309 7.4:-25412087 MS.gene058603:CDS
CTGCGGCAGCTGGCTGTCGC+AGG 0.309873 7.4:+25412250 None:intergenic
ATGTGGTTGGTCGCAGGCCG+AGG 0.337566 7.4:-25412467 MS.gene058603:CDS
GTGATGATCACCGGTGGTTT+AGG 0.340424 7.4:+25412417 None:intergenic
TGTTGTTGTTGTTTCCATCT+TGG 0.360934 7.4:+25412538 None:intergenic
GACTCTCATCATGAACTTCT+AGG 0.366743 7.4:+25412565 None:intergenic
GGTGGTGGCGGTGGCGGTGA+TGG 0.373600 7.4:-25411958 MS.gene058603:CDS
AGGAAATGTTGTTGGTCCTT+TGG 0.373900 7.4:-25412097 MS.gene058603:CDS
CAGGCCGAGGGGAAGACCTC+CGG 0.385089 7.4:-25412454 MS.gene058603:CDS
GCAGGTGGTGGTGGCGGTGG+CGG 0.386749 7.4:-25411964 MS.gene058603:CDS
CTCAATTACCTGTGGATGGT+TGG 0.390838 7.4:-25411870 MS.gene058603:CDS
GATGGTTGGGCTGGAAACTC+TGG 0.393465 7.4:-25411856 MS.gene058603:CDS
CAATCATCTGCAGGTGGTGG+TGG 0.397772 7.4:-25411973 MS.gene058603:CDS
CACAACCACTACTTACTTCA+AGG 0.405675 7.4:+25412361 None:intergenic
TTTGAAATACTTTCTTTGTC+CGG 0.416555 7.4:-25412201 MS.gene058603:CDS
TCTGCAGGTGGTGGTGGCGG+TGG 0.419155 7.4:-25411967 MS.gene058603:CDS
TCCTTTGGTTGCTTCTGGAC+CGG 0.431676 7.4:-25412082 MS.gene058603:CDS
TCAATTACCTGTGGATGGTT+GGG 0.435225 7.4:-25411869 MS.gene058603:CDS
GGTAATTGAGGCATACTTAG+AGG 0.445956 7.4:+25411883 None:intergenic
GTTTCACCAAATCATGGTCT+TGG 0.447139 7.4:-25412492 MS.gene058603:CDS
ATCTGTGTCCTTAGTGGGAG+TGG 0.450780 7.4:-25412291 MS.gene058603:CDS
CTTGTAGCTCCTGGAGGAGC+TGG 0.454018 7.4:+25412162 None:intergenic
GAGAGAGTGCAAACACACTT+AGG 0.457579 7.4:-25412392 MS.gene058603:CDS
CTGCGACAGCCAGCTGCCGC+AGG 0.457598 7.4:-25412249 MS.gene058603:CDS
TCATCTGCAGGTGGTGGTGG+CGG 0.457797 7.4:-25411970 MS.gene058603:CDS
ACATCACCAAGACCATGATT+TGG 0.459277 7.4:+25412486 None:intergenic
CGGGAGCCCCGACGATGGAT+CGG 0.459906 7.4:+25411918 None:intergenic
AAACTAGGTCAAGCCCTTCA+TGG 0.462788 7.4:+25412511 None:intergenic
TTAGAGGCAAATTAAAGAAC+GGG 0.464455 7.4:+25411899 None:intergenic
GACGAAGCGATGACAATAAC+CGG 0.472866 7.4:+25412063 None:intergenic
GTGTTCCTTGGTGGAGGCCA+AGG 0.474459 7.4:-25412132 MS.gene058603:CDS
GGGAGCCCCGACGATGGATC+GGG 0.480221 7.4:+25411919 None:intergenic
TTAGGTTTGTTCTTTGAGCC+CGG 0.481979 7.4:+25412435 None:intergenic
ACTACAGATCCTGCGGCAGC+TGG 0.485880 7.4:+25412240 None:intergenic
GACCTAGTTTCACCAAATCA+TGG 0.488286 7.4:-25412498 MS.gene058603:CDS
AGGCCGAGGGGAAGACCTCC+GGG 0.493538 7.4:-25412453 MS.gene058603:CDS
ACACTCAAACTTGTAGCTCC+TGG 0.497020 7.4:+25412153 None:intergenic
TGCGGCAGCTGGCTGTCGCA+GGG 0.497075 7.4:+25412251 None:intergenic
TTGAGTGTGTTCCTTGGTGG+AGG 0.501228 7.4:-25412138 MS.gene058603:CDS
CTCTCTCTTGTGATGATCAC+CGG 0.505990 7.4:+25412408 None:intergenic
GGAGGCCAAGGTCAAGTTGT+GGG 0.510469 7.4:-25412120 MS.gene058603:CDS
GCTCCTGGAGGAGCTGGTGG+TGG 0.510948 7.4:+25412168 None:intergenic
TGTGGTTGGTCGCAGGCCGA+GGG 0.511805 7.4:-25412466 MS.gene058603:CDS
TTCCTCCCACAACTTGACCT+TGG 0.512592 7.4:+25412115 None:intergenic
TTACCTGTGGATGGTTGGGC+TGG 0.513839 7.4:-25411865 MS.gene058603:CDS
TTGGTGATGTGGTTGGTCGC+AGG 0.519454 7.4:-25412473 MS.gene058603:CDS
TCATCATGAACTTCTAGGTC+AGG 0.525327 7.4:+25412570 None:intergenic
TCTTTGACGCTTTCTTGCAT+AGG 0.527877 7.4:+25412317 None:intergenic
ACAAGTTTGAGTGTGTTCCT+TGG 0.528630 7.4:-25412144 MS.gene058603:CDS
CTTCTAGGTCAGGACGTTGA+AGG 0.529343 7.4:+25412580 None:intergenic
CTGTAGTGACTTTACATGGA+AGG 0.531297 7.4:-25412224 MS.gene058603:CDS
CTACCACCACCAGCTCCTCC+AGG 0.536842 7.4:-25412171 MS.gene058603:CDS
GAAAACTTTGAGTATATGGC+CGG 0.541422 7.4:-25412642 None:intergenic
AGAGAGTGCAAACACACTTA+GGG 0.541596 7.4:-25412391 MS.gene058603:CDS
AGAGGGATCTGTGTCCTTAG+TGG 0.542753 7.4:-25412297 MS.gene058603:CDS
TGGTGGTGGTAGAAACGATC+CGG 0.543958 7.4:+25412182 None:intergenic
CAACAAGGGCAATCATCTGC+AGG 0.546733 7.4:-25411982 MS.gene058603:CDS
GGATCTGTAGTGACTTTACA+TGG 0.549227 7.4:-25412228 MS.gene058603:CDS
AGTTTGAGTGTGTTCCTTGG+TGG 0.550321 7.4:-25412141 MS.gene058603:CDS
GTTGTGGGAGGAAATGTTGT+TGG 0.550992 7.4:-25412105 MS.gene058603:CDS
GGGCAATCATCTGCAGGTGG+TGG 0.554269 7.4:-25411976 MS.gene058603:CDS
AGCGTATGAGAGGTTACCGT+TGG 0.556524 7.4:-25412028 MS.gene058603:CDS
CAACCATCCACAGGTAATTG+AGG 0.561892 7.4:+25411871 None:intergenic
CTTAGAGGCAAATTAAAGAA+CGG 0.562685 7.4:+25411898 None:intergenic
GAGGGATCTGTGTCCTTAGT+GGG 0.564060 7.4:-25412296 MS.gene058603:CDS
TTGTGATGTGTTTGACTCTG+TGG 0.565684 7.4:-25412343 MS.gene058603:CDS
TGCTGAACCCAAGTCTATGC+CGG 0.565994 7.4:+25412623 None:intergenic
GTAGCTCCTGGAGGAGCTGG+TGG 0.572143 7.4:+25412165 None:intergenic
GAGCCCGGAGGTCTTCCCCT+CGG 0.572413 7.4:+25412450 None:intergenic
AAATCATGGTCTTGGTGATG+TGG 0.576903 7.4:-25412484 MS.gene058603:CDS
TGACTGTTCCACTCCCACTA+AGG 0.581841 7.4:+25412283 None:intergenic
TTTCCAGCCCAACCATCCAC+AGG 0.587860 7.4:+25411862 None:intergenic
GAATCTCTTCAGATGCAACA+AGG 0.591663 7.4:-25411997 MS.gene058603:CDS
TATATGGCCGGCATAGACTT+GGG 0.593016 7.4:-25412630 MS.gene058603:CDS
AAGAACGGGAGCCCCGACGA+TGG 0.594740 7.4:+25411913 None:intergenic
TTACGAATGTAGCGTATGAG+AGG 0.596000 7.4:-25412038 MS.gene058603:CDS
GATGAGAGTCAAGACCAAGA+TGG 0.601725 7.4:-25412552 MS.gene058603:CDS
CATGGTCTTGGTGATGTGGT+TGG 0.607668 7.4:-25412480 MS.gene058603:CDS
ACAACAACAACAACCATGAA+GGG 0.608963 7.4:-25412524 MS.gene058603:CDS
AAAGAACAAACCTAAACCAC+CGG 0.614484 7.4:-25412427 MS.gene058603:CDS
GACCATGATTTGGTGAAACT+AGG 0.622258 7.4:+25412496 None:intergenic
CACATCCTTGAAGTAAGTAG+TGG 0.624516 7.4:-25412366 MS.gene058603:CDS
AAGTATGCCTCAATTACCTG+TGG 0.624607 7.4:-25411878 MS.gene058603:CDS
GTGGTTGGTCGCAGGCCGAG+GGG 0.626493 7.4:-25412465 MS.gene058603:CDS
ATGCAAGAAAGCGTCAAAGA+GGG 0.632366 7.4:-25412314 MS.gene058603:CDS
GGTTGGGCTGGAAACTCTGG+TGG 0.633531 7.4:-25411853 MS.gene058603:CDS
TATGCAAGAAAGCGTCAAAG+AGG 0.636647 7.4:-25412315 MS.gene058603:CDS
CTTGACCTTGGCCTCCACCA+AGG 0.637536 7.4:+25412127 None:intergenic
AGAGATTCATCTTCATCCAA+CGG 0.638904 7.4:+25412012 None:intergenic
AATCTCTTCAGATGCAACAA+GGG 0.641025 7.4:-25411996 MS.gene058603:CDS
ATGCCTCAATTACCTGTGGA+TGG 0.646439 7.4:-25411874 MS.gene058603:CDS
TCTCTTGTGATGATCACCGG+TGG 0.655714 7.4:+25412411 None:intergenic
TGGAGGCCAAGGTCAAGTTG+TGG 0.656888 7.4:-25412121 MS.gene058603:CDS
GGCCAAGGTCAAGTTGTGGG+AGG 0.658605 7.4:-25412117 MS.gene058603:CDS
ACCGGTCCAGAAGCAACCAA+AGG 0.664305 7.4:+25412081 None:intergenic
CAAGGGCAATCATCTGCAGG+TGG 0.674906 7.4:-25411979 MS.gene058603:CDS
GGTTTGTTCTTTGAGCCCGG+AGG 0.679300 7.4:+25412438 None:intergenic
TAAAGTCACTACAGATCCTG+CGG 0.683988 7.4:+25412233 None:intergenic
CTCAAACTTGTAGCTCCTGG+AGG 0.685267 7.4:+25412156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAAATACTTTCTTTGTC+CGG - chr7.4:25412263-25412282 MS.gene058603:CDS 25.0%
CTTAGAGGCAAATTAAAGAA+CGG + chr7.4:25412569-25412588 None:intergenic 30.0%
TTAGAGGCAAATTAAAGAAC+GGG + chr7.4:25412568-25412587 None:intergenic 30.0%
AAAGAACAAACCTAAACCAC+CGG - chr7.4:25412037-25412056 MS.gene058603:CDS 35.0%
AACAACAACAACAACCATGA+AGG - chr7.4:25411939-25411958 MS.gene058603:CDS 35.0%
AATCTCTTCAGATGCAACAA+GGG - chr7.4:25412468-25412487 MS.gene058603:CDS 35.0%
ACAACAACAACAACCATGAA+GGG - chr7.4:25411940-25411959 MS.gene058603:CDS 35.0%
AGAGATTCATCTTCATCCAA+CGG + chr7.4:25412455-25412474 None:intergenic 35.0%
!! TGTTGTTGTTGTTTCCATCT+TGG + chr7.4:25411929-25411948 None:intergenic 35.0%
AAGTATGCCTCAATTACCTG+TGG - chr7.4:25412586-25412605 MS.gene058603:CDS 40.0%
ACAAGTTTGAGTGTGTTCCT+TGG - chr7.4:25412320-25412339 MS.gene058603:CDS 40.0%
ACATCACCAAGACCATGATT+TGG + chr7.4:25411981-25412000 None:intergenic 40.0%
AGGAAATGTTGTTGGTCCTT+TGG - chr7.4:25412367-25412386 MS.gene058603:CDS 40.0%
CACAACCACTACTTACTTCA+AGG + chr7.4:25412106-25412125 None:intergenic 40.0%
CACATCCTTGAAGTAAGTAG+TGG - chr7.4:25412098-25412117 MS.gene058603:CDS 40.0%
CTGTAGTGACTTTACATGGA+AGG - chr7.4:25412240-25412259 MS.gene058603:CDS 40.0%
GAATCTCTTCAGATGCAACA+AGG - chr7.4:25412467-25412486 MS.gene058603:CDS 40.0%
GACCTAGTTTCACCAAATCA+TGG - chr7.4:25411966-25411985 MS.gene058603:CDS 40.0%
GACTCTCATCATGAACTTCT+AGG + chr7.4:25411902-25411921 None:intergenic 40.0%
GGATCTGTAGTGACTTTACA+TGG - chr7.4:25412236-25412255 MS.gene058603:CDS 40.0%
GGTAATTGAGGCATACTTAG+AGG + chr7.4:25412584-25412603 None:intergenic 40.0%
GTTTCACCAAATCATGGTCT+TGG - chr7.4:25411972-25411991 MS.gene058603:CDS 40.0%
TAAAGTCACTACAGATCCTG+CGG + chr7.4:25412234-25412253 None:intergenic 40.0%
TCAATTACCTGTGGATGGTT+GGG - chr7.4:25412595-25412614 MS.gene058603:CDS 40.0%
TCATCATGAACTTCTAGGTC+AGG + chr7.4:25411897-25411916 None:intergenic 40.0%
TCTTTGACGCTTTCTTGCAT+AGG + chr7.4:25412150-25412169 None:intergenic 40.0%
TTACGAATGTAGCGTATGAG+AGG - chr7.4:25412426-25412445 MS.gene058603:CDS 40.0%
TTGTGATGTGTTTGACTCTG+TGG - chr7.4:25412121-25412140 MS.gene058603:CDS 40.0%
! AGAGAGTGCAAACACACTTA+GGG - chr7.4:25412073-25412092 MS.gene058603:CDS 40.0%
! TTAGGTTTGTTCTTTGAGCC+CGG + chr7.4:25412032-25412051 None:intergenic 40.0%
!! AAATCATGGTCTTGGTGATG+TGG - chr7.4:25411980-25411999 MS.gene058603:CDS 40.0%
!! ATGCAAGAAAGCGTCAAAGA+GGG - chr7.4:25412150-25412169 MS.gene058603:CDS 40.0%
!! GACCATGATTTGGTGAAACT+AGG + chr7.4:25411971-25411990 None:intergenic 40.0%
!! TATGCAAGAAAGCGTCAAAG+AGG - chr7.4:25412149-25412168 MS.gene058603:CDS 40.0%
AAACTAGGTCAAGCCCTTCA+TGG + chr7.4:25411956-25411975 None:intergenic 45.0%
ACACTCAAACTTGTAGCTCC+TGG + chr7.4:25412314-25412333 None:intergenic 45.0%
AGTTTGAGTGTGTTCCTTGG+TGG - chr7.4:25412323-25412342 MS.gene058603:CDS 45.0%
ATGCCTCAATTACCTGTGGA+TGG - chr7.4:25412590-25412609 MS.gene058603:CDS 45.0%
CAACCATCCACAGGTAATTG+AGG + chr7.4:25412596-25412615 None:intergenic 45.0%
CTCAATTACCTGTGGATGGT+TGG - chr7.4:25412594-25412613 MS.gene058603:CDS 45.0%
CTCTCTCTTGTGATGATCAC+CGG + chr7.4:25412059-25412078 None:intergenic 45.0%
GACGAAGCGATGACAATAAC+CGG + chr7.4:25412404-25412423 None:intergenic 45.0%
GATGAGAGTCAAGACCAAGA+TGG - chr7.4:25411912-25411931 MS.gene058603:CDS 45.0%
GTTGTGGGAGGAAATGTTGT+TGG - chr7.4:25412359-25412378 MS.gene058603:CDS 45.0%
! GAGAGAGTGCAAACACACTT+AGG - chr7.4:25412072-25412091 MS.gene058603:CDS 45.0%
AGAGGGATCTGTGTCCTTAG+TGG - chr7.4:25412167-25412186 MS.gene058603:CDS 50.0%
AGCGTATGAGAGGTTACCGT+TGG - chr7.4:25412436-25412455 MS.gene058603:CDS 50.0%
ATCTGTGTCCTTAGTGGGAG+TGG - chr7.4:25412173-25412192 MS.gene058603:CDS 50.0%
CAACAAGGGCAATCATCTGC+AGG - chr7.4:25412482-25412501 MS.gene058603:CDS 50.0%
CTCAAACTTGTAGCTCCTGG+AGG + chr7.4:25412311-25412330 None:intergenic 50.0%
CTTCTAGGTCAGGACGTTGA+AGG + chr7.4:25411887-25411906 None:intergenic 50.0%
GAGGGATCTGTGTCCTTAGT+GGG - chr7.4:25412168-25412187 MS.gene058603:CDS 50.0%
GTGATGATCACCGGTGGTTT+AGG + chr7.4:25412050-25412069 None:intergenic 50.0%
GTTGGTCCTTTGGTTGCTTC+TGG - chr7.4:25412377-25412396 MS.gene058603:CDS 50.0%
TCCTTTGGTTGCTTCTGGAC+CGG - chr7.4:25412382-25412401 MS.gene058603:CDS 50.0%
TCTCTTGTGATGATCACCGG+TGG + chr7.4:25412056-25412075 None:intergenic 50.0%
TGACTGTTCCACTCCCACTA+AGG + chr7.4:25412184-25412203 None:intergenic 50.0%
TGCTGAACCCAAGTCTATGC+CGG + chr7.4:25411844-25411863 None:intergenic 50.0%
TTCCTCCCACAACTTGACCT+TGG + chr7.4:25412352-25412371 None:intergenic 50.0%
TTGAGTGTGTTCCTTGGTGG+AGG - chr7.4:25412326-25412345 MS.gene058603:CDS 50.0%
! CTCTTTTCCCGATCCATCGT+CGG - chr7.4:25412538-25412557 MS.gene058603:CDS 50.0%
! TCTTTTCCCGATCCATCGTC+GGG - chr7.4:25412539-25412558 MS.gene058603:CDS 50.0%
!! CATGGTCTTGGTGATGTGGT+TGG - chr7.4:25411984-25412003 MS.gene058603:CDS 50.0%
!! TGGTGGTGGTAGAAACGATC+CGG + chr7.4:25412285-25412304 None:intergenic 50.0%
ACCGGTCCAGAAGCAACCAA+AGG + chr7.4:25412386-25412405 None:intergenic 55.0%
CAAGGGCAATCATCTGCAGG+TGG - chr7.4:25412485-25412504 MS.gene058603:CDS 55.0%
TTACCTGTGGATGGTTGGGC+TGG - chr7.4:25412599-25412618 MS.gene058603:CDS 55.0%
TTTCCAGCCCAACCATCCAC+AGG + chr7.4:25412605-25412624 None:intergenic 55.0%
! CAATCATCTGCAGGTGGTGG+TGG - chr7.4:25412491-25412510 MS.gene058603:CDS 55.0%
! CTTTTCCCGATCCATCGTCG+GGG - chr7.4:25412540-25412559 MS.gene058603:CDS 55.0%
! GATGGTTGGGCTGGAAACTC+TGG - chr7.4:25412608-25412627 MS.gene058603:CDS 55.0%
! GGAGGCCAAGGTCAAGTTGT+GGG - chr7.4:25412344-25412363 MS.gene058603:CDS 55.0%
! GGTTTGTTCTTTGAGCCCGG+AGG + chr7.4:25412029-25412048 None:intergenic 55.0%
! TGGAGGCCAAGGTCAAGTTG+TGG - chr7.4:25412343-25412362 MS.gene058603:CDS 55.0%
!! TTGGTGATGTGGTTGGTCGC+AGG - chr7.4:25411991-25412010 MS.gene058603:CDS 55.0%
ACTACAGATCCTGCGGCAGC+TGG + chr7.4:25412227-25412246 None:intergenic 60.0%
CTTGACCTTGGCCTCCACCA+AGG + chr7.4:25412340-25412359 None:intergenic 60.0%
CTTGTAGCTCCTGGAGGAGC+TGG + chr7.4:25412305-25412324 None:intergenic 60.0%
GGGCAATCATCTGCAGGTGG+TGG - chr7.4:25412488-25412507 MS.gene058603:CDS 60.0%
GTGTTCCTTGGTGGAGGCCA+AGG - chr7.4:25412332-25412351 MS.gene058603:CDS 60.0%
! GGCCAAGGTCAAGTTGTGGG+AGG - chr7.4:25412347-25412366 MS.gene058603:CDS 60.0%
! GGTTGGGCTGGAAACTCTGG+TGG - chr7.4:25412611-25412630 MS.gene058603:CDS 60.0%
!! TCATCTGCAGGTGGTGGTGG+CGG - chr7.4:25412494-25412513 MS.gene058603:CDS 60.0%
AAGAACGGGAGCCCCGACGA+TGG + chr7.4:25412554-25412573 None:intergenic 65.0%
CTACCACCACCAGCTCCTCC+AGG - chr7.4:25412293-25412312 MS.gene058603:CDS 65.0%
GTAGCTCCTGGAGGAGCTGG+TGG + chr7.4:25412302-25412321 None:intergenic 65.0%
! ATGTGGTTGGTCGCAGGCCG+AGG - chr7.4:25411997-25412016 MS.gene058603:CDS 65.0%
! TGTGGTTGGTCGCAGGCCGA+GGG - chr7.4:25411998-25412017 MS.gene058603:CDS 65.0%
AGGCCGAGGGGAAGACCTCC+GGG - chr7.4:25412011-25412030 MS.gene058603:CDS 70.0%
CAGGCCGAGGGGAAGACCTC+CGG - chr7.4:25412010-25412029 MS.gene058603:CDS 70.0%
CGGGAGCCCCGACGATGGAT+CGG + chr7.4:25412549-25412568 None:intergenic 70.0%
GAGCCCGGAGGTCTTCCCCT+CGG + chr7.4:25412017-25412036 None:intergenic 70.0%
GCTCCTGGAGGAGCTGGTGG+TGG + chr7.4:25412299-25412318 None:intergenic 70.0%
GGGAGCCCCGACGATGGATC+GGG + chr7.4:25412548-25412567 None:intergenic 70.0%
TGCGGCAGCTGGCTGTCGCA+GGG + chr7.4:25412216-25412235 None:intergenic 70.0%
! GTGGTTGGTCGCAGGCCGAG+GGG - chr7.4:25411999-25412018 MS.gene058603:CDS 70.0%
!! TCTGCAGGTGGTGGTGGCGG+TGG - chr7.4:25412497-25412516 MS.gene058603:CDS 70.0%
CTGCGACAGCCAGCTGCCGC+AGG - chr7.4:25412215-25412234 MS.gene058603:CDS 75.0%
CTGCGGCAGCTGGCTGTCGC+AGG + chr7.4:25412217-25412236 None:intergenic 75.0%
!! GCAGGTGGTGGTGGCGGTGG+CGG - chr7.4:25412500-25412519 MS.gene058603:CDS 75.0%
!! GGTGGTGGCGGTGGCGGTGA+TGG - chr7.4:25412506-25412525 MS.gene058603:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 25411837 25412649 25411837 ID=MS.gene058603
chr7.4 mRNA 25411837 25412649 25411837 ID=MS.gene058603.t1;Parent=MS.gene058603
chr7.4 exon 25411837 25412649 25411837 ID=MS.gene058603.t1.exon1;Parent=MS.gene058603.t1
chr7.4 CDS 25411837 25412649 25411837 ID=cds.MS.gene058603.t1;Parent=MS.gene058603.t1
Gene Sequence

>MS.gene058603

ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGCCTTCAACGTCCTGACCTAGAAGTTCATGATGAGAGTCAAGACCAAGATGGAAACAACAACAACAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGTGATGTGGTTGGTCGCAGGCCGAGGGGAAGACCTCCGGGCTCAAAGAACAAACCTAAACCACCGGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAAGTAAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTTAGTGGGAGTGGAACAGTCACTAACGTGACCCTGCGACAGCCAGCTGCCGCAGGATCTGTAGTGACTTTACATGGAAGGTTTGAAATACTTTCTTTGTCCGGATCGTTTCTACCACCACCAGCTCCTCCAGGAGCTACAAGTTTGAGTGTGTTCCTTGGTGGAGGCCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGGTTGCTTCTGGACCGGTTATTGTCATCGCTTCGTCTTTTACGAATGTAGCGTATGAGAGGTTACCGTTGGATGAAGATGAATCTCTTCAGATGCAACAAGGGCAATCATCTGCAGGTGGTGGTGGCGGTGGCGGTGATGGTGTCAATAACTCTTTTCCCGATCCATCGTCGGGGCTCCCGTTCTTTAATTTGCCTCTAAGTATGCCTCAATTACCTGTGGATGGTTGGGCTGGAAACTCTGGTGGAAGACAATCTTATTGA

Protein sequence

>MS.gene058603.t1

MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGGGDGVNNSFPDPSSGLPFFNLPLSMPQLPVDGWAGNSGGRQSY