Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80572.t1 | XP_003609136.2 | 97.4 | 265 | 2 | 2 | 1 | 265 | 1 | 260 | 1.80E-141 | 511.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80572.t1 | O22227 | 52.2 | 180 | 70 | 4 | 97 | 265 | 123 | 297 | 3.7e-47 | 189.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80572.t1 | G7JT11 | 97.4 | 265 | 2 | 2 | 1 | 265 | 1 | 260 | 1.3e-141 | 511.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051279 | MS.gene80572 | 0.801009 | 1.10E-48 | -1.69E-46 |
MS.gene051719 | MS.gene80572 | 0.803713 | 3.06E-49 | -1.69E-46 |
MS.gene051720 | MS.gene80572 | 0.804009 | 2.65E-49 | -1.69E-46 |
MS.gene053226 | MS.gene80572 | 0.818031 | 2.42E-52 | -1.69E-46 |
MS.gene056173 | MS.gene80572 | 0.807403 | 5.14E-50 | -1.69E-46 |
MS.gene059625 | MS.gene80572 | 0.811274 | 7.60E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80572.t1 | MTR_4g112370 | 97.358 | 265 | 2 | 2 | 1 | 265 | 1 | 260 | 0.0 | 528 |
MS.gene80572.t1 | MTR_2g055990 | 73.622 | 254 | 56 | 4 | 21 | 265 | 8 | 259 | 5.80e-135 | 381 |
MS.gene80572.t1 | MTR_2g054380 | 54.231 | 260 | 98 | 5 | 23 | 265 | 15 | 270 | 3.81e-86 | 258 |
MS.gene80572.t1 | MTR_1g053130 | 52.153 | 209 | 78 | 4 | 79 | 265 | 76 | 284 | 2.09e-60 | 192 |
MS.gene80572.t1 | MTR_3g094830 | 44.693 | 179 | 93 | 4 | 89 | 265 | 85 | 259 | 3.35e-52 | 171 |
MS.gene80572.t1 | MTR_8g040690 | 46.108 | 167 | 85 | 2 | 100 | 265 | 85 | 247 | 3.78e-52 | 170 |
MS.gene80572.t1 | MTR_8g040680 | 45.509 | 167 | 86 | 2 | 100 | 265 | 95 | 257 | 3.20e-50 | 166 |
MS.gene80572.t1 | MTR_3g101300 | 46.821 | 173 | 77 | 6 | 101 | 264 | 69 | 235 | 4.03e-45 | 152 |
MS.gene80572.t1 | MTR_7g064810 | 46.012 | 163 | 82 | 3 | 103 | 264 | 65 | 222 | 3.21e-41 | 142 |
MS.gene80572.t1 | MTR_3g086740 | 37.576 | 165 | 97 | 3 | 103 | 264 | 81 | 242 | 1.02e-33 | 122 |
MS.gene80572.t1 | MTR_8g089865 | 39.157 | 166 | 91 | 5 | 105 | 264 | 59 | 220 | 1.61e-32 | 119 |
MS.gene80572.t1 | MTR_1g102920 | 89.583 | 48 | 4 | 1 | 46 | 93 | 7 | 53 | 1.32e-20 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80572.t1 | AT5G23100 | 58.696 | 276 | 85 | 6 | 18 | 265 | 3 | 277 | 5.30e-100 | 293 |
MS.gene80572.t1 | AT3G25640 | 66.667 | 180 | 45 | 3 | 97 | 265 | 118 | 293 | 1.42e-78 | 239 |
MS.gene80572.t1 | AT3G25640 | 66.667 | 180 | 45 | 3 | 97 | 265 | 92 | 267 | 2.55e-78 | 238 |
MS.gene80572.t1 | AT2G41660 | 52.222 | 180 | 70 | 4 | 97 | 265 | 123 | 297 | 2.16e-60 | 193 |
MS.gene80572.t1 | AT2G21990 | 49.102 | 167 | 80 | 2 | 100 | 265 | 90 | 252 | 3.40e-54 | 176 |
MS.gene80572.t1 | AT4G39610 | 47.059 | 170 | 85 | 2 | 101 | 265 | 95 | 264 | 5.83e-54 | 176 |
MS.gene80572.t1 | AT5G06990 | 46.893 | 177 | 78 | 3 | 100 | 265 | 90 | 261 | 1.61e-53 | 174 |
MS.gene80572.t1 | AT2G37880 | 50.595 | 168 | 73 | 4 | 103 | 264 | 81 | 244 | 1.22e-48 | 161 |
MS.gene80572.t1 | AT5G42680 | 47.561 | 164 | 76 | 5 | 105 | 264 | 79 | 236 | 5.14e-42 | 144 |
MS.gene80572.t1 | AT5G42680 | 47.561 | 164 | 76 | 5 | 105 | 264 | 79 | 236 | 5.14e-42 | 144 |
MS.gene80572.t1 | AT1G21050 | 44.444 | 162 | 82 | 4 | 105 | 264 | 89 | 244 | 1.93e-40 | 140 |
MS.gene80572.t1 | AT1G21050 | 44.444 | 162 | 82 | 4 | 105 | 264 | 125 | 280 | 2.37e-40 | 141 |
MS.gene80572.t1 | AT1G76610 | 43.713 | 167 | 78 | 4 | 100 | 264 | 73 | 225 | 8.75e-36 | 127 |
MS.gene80572.t1 | AT5G65340 | 41.212 | 165 | 92 | 4 | 105 | 264 | 85 | 249 | 6.54e-34 | 123 |
MS.gene80572.t1 | AT2G22460 | 38.889 | 162 | 93 | 2 | 103 | 263 | 85 | 241 | 1.29e-31 | 117 |
Find 51 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGTGGGTGATGGTTCTTC+TGG | 0.210488 | 8.1:+14608087 | None:intergenic |
TTGGTTCGTGAAATGGCTTC+TGG | 0.218997 | 8.1:-14607778 | MS.gene80572:CDS |
TCACGAACCAAACCACTAAT+TGG | 0.265712 | 8.1:+14607790 | None:intergenic |
CGTGTTGTTGGAACCCTCTT+TGG | 0.284809 | 8.1:-14607892 | MS.gene80572:CDS |
CTTCCAAAAGACACTTTCAT+TGG | 0.317781 | 8.1:-14608134 | MS.gene80572:CDS |
ACACCAGCACCCATTGAAAT+AGG | 0.321507 | 8.1:+14607580 | None:intergenic |
TGGTGGGTGATGGTTCTTCT+GGG | 0.369853 | 8.1:+14608088 | None:intergenic |
TAGTGGTTTGGTTCGTGAAA+TGG | 0.373367 | 8.1:-14607785 | MS.gene80572:CDS |
TCAGGAGCACCATTGCTATC+AGG | 0.382273 | 8.1:+14607448 | None:intergenic |
TGGTTCGTGAAATGGCTTCT+GGG | 0.390455 | 8.1:-14607777 | MS.gene80572:CDS |
TGCAACACCAATTAGTGGTT+TGG | 0.390838 | 8.1:-14607797 | MS.gene80572:CDS |
GGTCTTGGTTCACGTGTTGT+TGG | 0.394137 | 8.1:-14607904 | MS.gene80572:CDS |
TGTCCAATGAAAGTGTCTTT+TGG | 0.397094 | 8.1:+14608131 | None:intergenic |
GCATGTCCTCCTCCTGAAAC+AGG | 0.405991 | 8.1:+14608018 | None:intergenic |
GAGCTTGCAACACCAATTAG+TGG | 0.410894 | 8.1:-14607802 | MS.gene80572:CDS |
TCAAATCTACCCTCTGGTCT+TGG | 0.414007 | 8.1:-14607919 | MS.gene80572:CDS |
CTTTGGAGGACTTATTGTAA+TGG | 0.414774 | 8.1:-14607673 | MS.gene80572:CDS |
GCAAGGTTTGAGAGAATTGT+TGG | 0.417883 | 8.1:-14607505 | MS.gene80572:CDS |
GAAAATGAAAACACTAATCA+TGG | 0.440137 | 8.1:-14608199 | None:intergenic |
TTTCATTGGACAAACAAAGT+TGG | 0.442917 | 8.1:-14608120 | MS.gene80572:CDS |
AGAAAAGCTGGTTGTGAAGT+AGG | 0.455946 | 8.1:+14607829 | None:intergenic |
GATTGTTGCAAGAGCCACTT+TGG | 0.458144 | 8.1:-14607690 | MS.gene80572:CDS |
TCTTGAATGTGATAAAGTTA+AGG | 0.462515 | 8.1:-14607740 | MS.gene80572:CDS |
AGCAAATAAACACTAAGCTC+AGG | 0.497939 | 8.1:+14607430 | None:intergenic |
GCTGTTGAGCCTATTTCAAT+GGG | 0.498481 | 8.1:-14607589 | MS.gene80572:CDS |
GAGCCTATTTCAATGGGTGC+TGG | 0.499015 | 8.1:-14607583 | MS.gene80572:CDS |
AGCTGTTGAGCCTATTTCAA+TGG | 0.499933 | 8.1:-14607590 | MS.gene80572:CDS |
CAAGGTTTGAGAGAATTGTT+GGG | 0.500323 | 8.1:-14607504 | MS.gene80572:CDS |
GAACAACCAGCTTCACCACC+TGG | 0.519832 | 8.1:+14607553 | None:intergenic |
GATAAAGTTAAGGAGAAAGA+AGG | 0.526239 | 8.1:-14607730 | MS.gene80572:CDS |
GAAAAGCTGGTTGTGAAGTA+GGG | 0.527380 | 8.1:+14607830 | None:intergenic |
GGTGAAGCTGGTTGTTCTGA+TGG | 0.530478 | 8.1:-14607547 | MS.gene80572:CDS |
AAGTTATGTATATGAGAGCA+AGG | 0.549681 | 8.1:-14607522 | MS.gene80572:CDS |
TGTTGCAAGAGCCACTTTGG+AGG | 0.550258 | 8.1:-14607687 | MS.gene80572:CDS |
AACCGTTCAAATCTACCCTC+TGG | 0.551791 | 8.1:-14607925 | MS.gene80572:CDS |
ACGTATTCTTGAAATTGCTA+CGG | 0.556557 | 8.1:+14607972 | None:intergenic |
GAGGAGGACATGCAGCTACA+AGG | 0.559240 | 8.1:-14608008 | MS.gene80572:CDS |
AGATGGGTCTTGAGGAGTTG+AGG | 0.562495 | 8.1:+14608155 | None:intergenic |
GCAAGCTCAATGAGAAAAGC+TGG | 0.564770 | 8.1:+14607817 | None:intergenic |
TCGTGAAATGGCTTCTGGGT+TGG | 0.566947 | 8.1:-14607773 | MS.gene80572:CDS |
ACCCTCTTTGGTTACCGTCG+TGG | 0.572266 | 8.1:-14607880 | MS.gene80572:CDS |
GACCAGAGGGTAGATTTGAA+CGG | 0.580928 | 8.1:+14607923 | None:intergenic |
CGAAATGAACATGGCCACGA+CGG | 0.590275 | 8.1:+14607866 | None:intergenic |
GCCACGACGGTAACCAAAGA+GGG | 0.602309 | 8.1:+14607879 | None:intergenic |
TCTGAAAAGCGAAATGAACA+TGG | 0.608653 | 8.1:+14607857 | None:intergenic |
GGCCACGACGGTAACCAAAG+AGG | 0.632589 | 8.1:+14607878 | None:intergenic |
TTTGGTAATAGAAGAGAATG+TGG | 0.634366 | 8.1:-14607637 | MS.gene80572:CDS |
TTACAATAAGTCCTCCAAAG+TGG | 0.641562 | 8.1:+14607676 | None:intergenic |
ACACGTGAACCAAGACCAGA+GGG | 0.658866 | 8.1:+14607910 | None:intergenic |
AACACGTGAACCAAGACCAG+AGG | 0.689373 | 8.1:+14607909 | None:intergenic |
ATGATGAATCCTGATAGCAA+TGG | 0.728571 | 8.1:-14607457 | MS.gene80572:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TCTTGAATGTGATAAAGTTA+AGG | - | chr8.1:14607875-14607894 | MS.gene80572:CDS | 25.0% |
!! | AGGTTTTTCTTCATGTTTTT+TGG | + | chr8.1:14607580-14607599 | None:intergenic | 25.0% |
!! | TATTGTAATGGAAAAAAGTG+TGG | - | chr8.1:14607954-14607973 | MS.gene80572:CDS | 25.0% |
!!! | AAGAATACGTTCTGTTTTAA+CGG | - | chr8.1:14607656-14607675 | MS.gene80572:CDS | 25.0% |
!!! | GTTTTGTTCTTCTATGATTT+TGG | + | chr8.1:14607556-14607575 | None:intergenic | 25.0% |
AAGTTATGTATATGAGAGCA+AGG | - | chr8.1:14608093-14608112 | MS.gene80572:CDS | 30.0% | |
ACGTATTCTTGAAATTGCTA+CGG | + | chr8.1:14607646-14607665 | None:intergenic | 30.0% | |
AGAATGTGGTGAAAAAGATT+GGG | - | chr8.1:14607992-14608011 | MS.gene80572:CDS | 30.0% | |
GATAAAGTTAAGGAGAAAGA+AGG | - | chr8.1:14607885-14607904 | MS.gene80572:CDS | 30.0% | |
TTTCATTGGACAAACAAAGT+TGG | - | chr8.1:14607495-14607514 | MS.gene80572:CDS | 30.0% | |
! | AATGGAAAAAAGTGTGGATT+TGG | - | chr8.1:14607960-14607979 | MS.gene80572:CDS | 30.0% |
! | TTCTTCTATGATTTTGGACA+TGG | + | chr8.1:14607550-14607569 | None:intergenic | 30.0% |
! | TTTGGTAATAGAAGAGAATG+TGG | - | chr8.1:14607978-14607997 | MS.gene80572:CDS | 30.0% |
AGCAAATAAACACTAAGCTC+AGG | + | chr8.1:14608188-14608207 | None:intergenic | 35.0% | |
ATGATGAATCCTGATAGCAA+TGG | - | chr8.1:14608158-14608177 | MS.gene80572:CDS | 35.0% | |
CAAGGTTTGAGAGAATTGTT+GGG | - | chr8.1:14608111-14608130 | MS.gene80572:CDS | 35.0% | |
CATGAAGAAAAACCTGTTTC+AGG | - | chr8.1:14607585-14607604 | MS.gene80572:CDS | 35.0% | |
CTTCCAAAAGACACTTTCAT+TGG | - | chr8.1:14607481-14607500 | MS.gene80572:CDS | 35.0% | |
GAGAATGTGGTGAAAAAGAT+TGG | - | chr8.1:14607991-14608010 | MS.gene80572:CDS | 35.0% | |
TCTGAAAAGCGAAATGAACA+TGG | + | chr8.1:14607761-14607780 | None:intergenic | 35.0% | |
TTACAATAAGTCCTCCAAAG+TGG | + | chr8.1:14607942-14607961 | None:intergenic | 35.0% | |
! | CTTTGGAGGACTTATTGTAA+TGG | - | chr8.1:14607942-14607961 | MS.gene80572:CDS | 35.0% |
! | TCTATGATTTTGGACATGGT+GGG | + | chr8.1:14607546-14607565 | None:intergenic | 35.0% |
! | TTCTATGATTTTGGACATGG+TGG | + | chr8.1:14607547-14607566 | None:intergenic | 35.0% |
!!! | GAAAGTGTCTTTTGGAAGAT+GGG | + | chr8.1:14607479-14607498 | None:intergenic | 35.0% |
!!! | TGAAAGTGTCTTTTGGAAGA+TGG | + | chr8.1:14607480-14607499 | None:intergenic | 35.0% |
!!! | TGTCCAATGAAAGTGTCTTT+TGG | + | chr8.1:14607487-14607506 | None:intergenic | 35.0% |
AGAAAAGCTGGTTGTGAAGT+AGG | + | chr8.1:14607789-14607808 | None:intergenic | 40.0% | |
AGCTGTTGAGCCTATTTCAA+TGG | - | chr8.1:14608025-14608044 | MS.gene80572:CDS | 40.0% | |
GAAAAGCTGGTTGTGAAGTA+GGG | + | chr8.1:14607788-14607807 | None:intergenic | 40.0% | |
GAAGAAAAACCTGTTTCAGG+AGG | - | chr8.1:14607588-14607607 | MS.gene80572:CDS | 40.0% | |
GCAAGGTTTGAGAGAATTGT+TGG | - | chr8.1:14608110-14608129 | MS.gene80572:CDS | 40.0% | |
GCTGTTGAGCCTATTTCAAT+GGG | - | chr8.1:14608026-14608045 | MS.gene80572:CDS | 40.0% | |
TCACGAACCAAACCACTAAT+TGG | + | chr8.1:14607828-14607847 | None:intergenic | 40.0% | |
TGCAACACCAATTAGTGGTT+TGG | - | chr8.1:14607818-14607837 | MS.gene80572:CDS | 40.0% | |
!! | TAGTGGTTTGGTTCGTGAAA+TGG | - | chr8.1:14607830-14607849 | MS.gene80572:CDS | 40.0% |
AACCGTTCAAATCTACCCTC+TGG | - | chr8.1:14607690-14607709 | MS.gene80572:CDS | 45.0% | |
ACACCAGCACCCATTGAAAT+AGG | + | chr8.1:14608038-14608057 | None:intergenic | 45.0% | |
GAAAAACCTGTTTCAGGAGG+AGG | - | chr8.1:14607591-14607610 | MS.gene80572:CDS | 45.0% | |
GACCAGAGGGTAGATTTGAA+CGG | + | chr8.1:14607695-14607714 | None:intergenic | 45.0% | |
GAGCTTGCAACACCAATTAG+TGG | - | chr8.1:14607813-14607832 | MS.gene80572:CDS | 45.0% | |
GATTGTTGCAAGAGCCACTT+TGG | - | chr8.1:14607925-14607944 | MS.gene80572:CDS | 45.0% | |
GCAAGCTCAATGAGAAAAGC+TGG | + | chr8.1:14607801-14607820 | None:intergenic | 45.0% | |
TCAAATCTACCCTCTGGTCT+TGG | - | chr8.1:14607696-14607715 | MS.gene80572:CDS | 45.0% | |
TGGTTCGTGAAATGGCTTCT+GGG | - | chr8.1:14607838-14607857 | MS.gene80572:CDS | 45.0% | |
! | TTGGTTCGTGAAATGGCTTC+TGG | - | chr8.1:14607837-14607856 | MS.gene80572:CDS | 45.0% |
!! | CTTTTGGAAGATGGGTCTTG+AGG | + | chr8.1:14607471-14607490 | None:intergenic | 45.0% |
!!! | ATTTTGGACATGGTGGGTGA+TGG | + | chr8.1:14607540-14607559 | None:intergenic | 45.0% |
AACACGTGAACCAAGACCAG+AGG | + | chr8.1:14607709-14607728 | None:intergenic | 50.0% | |
ACACGTGAACCAAGACCAGA+GGG | + | chr8.1:14607708-14607727 | None:intergenic | 50.0% | |
AGATGGGTCTTGAGGAGTTG+AGG | + | chr8.1:14607463-14607482 | None:intergenic | 50.0% | |
CGAAATGAACATGGCCACGA+CGG | + | chr8.1:14607752-14607771 | None:intergenic | 50.0% | |
GAGCCTATTTCAATGGGTGC+TGG | - | chr8.1:14608032-14608051 | MS.gene80572:CDS | 50.0% | |
GGTCTTGGTTCACGTGTTGT+TGG | - | chr8.1:14607711-14607730 | MS.gene80572:CDS | 50.0% | |
GGTGAAGCTGGTTGTTCTGA+TGG | - | chr8.1:14608068-14608087 | MS.gene80572:CDS | 50.0% | |
TCGTGAAATGGCTTCTGGGT+TGG | - | chr8.1:14607842-14607861 | MS.gene80572:CDS | 50.0% | |
! | CGTGTTGTTGGAACCCTCTT+TGG | - | chr8.1:14607723-14607742 | MS.gene80572:CDS | 50.0% |
! | TGGTGGGTGATGGTTCTTCT+GGG | + | chr8.1:14607530-14607549 | None:intergenic | 50.0% |
! | TGTTGCAAGAGCCACTTTGG+AGG | - | chr8.1:14607928-14607947 | MS.gene80572:CDS | 50.0% |
!! | ATGGTGGGTGATGGTTCTTC+TGG | + | chr8.1:14607531-14607550 | None:intergenic | 50.0% |
!! | TCAGGAGCACCATTGCTATC+AGG | + | chr8.1:14608170-14608189 | None:intergenic | 50.0% |
ACCCTCTTTGGTTACCGTCG+TGG | - | chr8.1:14607735-14607754 | MS.gene80572:CDS | 55.0% | |
GAACAACCAGCTTCACCACC+TGG | + | chr8.1:14608065-14608084 | None:intergenic | 55.0% | |
GAGGAGGACATGCAGCTACA+AGG | - | chr8.1:14607607-14607626 | MS.gene80572:CDS | 55.0% | |
GCATGTCCTCCTCCTGAAAC+AGG | + | chr8.1:14607600-14607619 | None:intergenic | 55.0% | |
GCCACGACGGTAACCAAAGA+GGG | + | chr8.1:14607739-14607758 | None:intergenic | 55.0% | |
! | GTTTTGCCAGGTGGTGAAGC+TGG | - | chr8.1:14608056-14608075 | MS.gene80572:CDS | 55.0% |
!!! | ATGGGTGCTGGTGTTTTGCC+AGG | - | chr8.1:14608044-14608063 | MS.gene80572:CDS | 55.0% |
GGCCACGACGGTAACCAAAG+AGG | + | chr8.1:14607740-14607759 | None:intergenic | 60.0% | |
!!! | GGTGCTGGTGTTTTGCCAGG+TGG | - | chr8.1:14608047-14608066 | MS.gene80572:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 14607420 | 14608217 | 14607420 | ID=MS.gene80572 |
chr8.1 | mRNA | 14607420 | 14608217 | 14607420 | ID=MS.gene80572.t1;Parent=MS.gene80572 |
chr8.1 | exon | 14607420 | 14608217 | 14607420 | ID=MS.gene80572.t1.exon1;Parent=MS.gene80572.t1 |
chr8.1 | CDS | 14607420 | 14608217 | 14607420 | ID=cds.MS.gene80572.t1;Parent=MS.gene80572.t1 |
Gene Sequence |
Protein sequence |