Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80598.t1 | RLN22349.1 | 40.6 | 101 | 43 | 2 | 115 | 199 | 278 | 377 | 5.10E-08 | 68.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80598.t1 | A0A3L6SIA6 | 40.6 | 101 | 43 | 2 | 115 | 199 | 278 | 377 | 3.6e-08 | 68.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene80598 | 0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene80598 | 0.802886 | 4.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80598.t1 | MTR_5g010520 | 79.070 | 43 | 8 | 1 | 66 | 107 | 26 | 68 | 1.57e-13 | 68.9 |
| MS.gene80598.t1 | MTR_5g010520 | 79.070 | 43 | 8 | 1 | 66 | 107 | 26 | 68 | 2.25e-13 | 68.6 |
| MS.gene80598.t1 | MTR_3g109390 | 70.455 | 44 | 12 | 1 | 157 | 199 | 304 | 347 | 1.13e-11 | 63.2 |
| MS.gene80598.t1 | MTR_3g109390 | 70.455 | 44 | 12 | 1 | 157 | 199 | 326 | 369 | 1.24e-11 | 63.2 |
| MS.gene80598.t1 | MTR_3g109390 | 70.455 | 44 | 12 | 1 | 157 | 199 | 317 | 360 | 1.59e-11 | 62.8 |
| MS.gene80598.t1 | MTR_3g109390 | 70.455 | 44 | 12 | 1 | 157 | 199 | 295 | 338 | 1.59e-11 | 62.8 |
| MS.gene80598.t1 | MTR_3g109390 | 84.848 | 33 | 5 | 0 | 167 | 199 | 326 | 358 | 2.78e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAATGATGGAGAGACTTT+TGG | 0.267095 | 5.4:-63981382 | MS.gene80598:CDS |
| CTCCCTTGAAACACCTCCTT+CGG | 0.302889 | 5.4:+63981104 | None:intergenic |
| CAAGAAGCTTGGTGATCTTA+AGG | 0.315610 | 5.4:-63981067 | MS.gene80598:intron |
| GAGAAAGCTATGGTTCAATA+TGG | 0.362696 | 5.4:-63981645 | MS.gene80598:CDS |
| ACTTATACCTTTGAACCATA+TGG | 0.372568 | 5.4:+63981346 | None:intergenic |
| ACTTGCTTCACAGTACTAGA+AGG | 0.377228 | 5.4:-63981165 | MS.gene80598:intron |
| TAACTTCAGGTGTTACAATC+AGG | 0.384621 | 5.4:-63981726 | MS.gene80598:intron |
| GCCATGCTATTCAATGATAC+TGG | 0.385947 | 5.4:-63983057 | None:intergenic |
| GATCGAGTCTCAGAAAGAAA+TGG | 0.395489 | 5.4:+63982912 | None:intergenic |
| AACTTGTCGGTTGGAGAATC+CGG | 0.407883 | 5.4:-63981622 | MS.gene80598:intron |
| ATGTAGGCATGGTTTGAATC+TGG | 0.417113 | 5.4:-63981487 | MS.gene80598:intron |
| TCCCTTGAAACACCTCCTTC+GGG | 0.421634 | 5.4:+63981105 | None:intergenic |
| GGGACCTCTACCAGACCATA+TGG | 0.423745 | 5.4:-63981361 | MS.gene80598:CDS |
| TGGTTTGAATCTGGAACAAC+TGG | 0.425824 | 5.4:-63981478 | MS.gene80598:CDS |
| GCCCGTCGCAGATGGAAGAT+TGG | 0.426663 | 5.4:+63982886 | None:intergenic |
| TTTGGAGCACCGGGCAATGA+TGG | 0.443476 | 5.4:-63981394 | MS.gene80598:CDS |
| TACCTTTGAACCATATGGTC+TGG | 0.462209 | 5.4:+63981351 | None:intergenic |
| GAGGTCGCAAAGAGGGAAGT+AGG | 0.474600 | 5.4:+63982954 | None:intergenic |
| ATCGAGTCTCAGAAAGAAAT+GGG | 0.478739 | 5.4:+63982913 | None:intergenic |
| ATGAGATCGCCCGTCGCAGA+TGG | 0.483856 | 5.4:+63982878 | None:intergenic |
| TGGTTCAATATGGAACTTGT+CGG | 0.484741 | 5.4:-63981635 | MS.gene80598:CDS |
| GGCCCGAAGGAGGTGTTTCA+AGG | 0.489761 | 5.4:-63981107 | MS.gene80598:CDS |
| AAAGCTTTCCCTCCCTCAAA+AGG | 0.490711 | 5.4:+63982994 | None:intergenic |
| CTCACGAAAATTTGGAGCAC+CGG | 0.502469 | 5.4:-63981404 | MS.gene80598:CDS |
| TCCAATCTTCCATCTGCGAC+GGG | 0.503968 | 5.4:-63982887 | MS.gene80598:CDS |
| CTCCAATCTTCCATCTGCGA+CGG | 0.512367 | 5.4:-63982888 | MS.gene80598:CDS |
| TCAATAGTTCCTGCTGACAT+TGG | 0.519198 | 5.4:-63981684 | MS.gene80598:CDS |
| TCAATATGGAACTTGTCGGT+TGG | 0.521111 | 5.4:-63981631 | MS.gene80598:CDS |
| ATAAATGAAGTCAAGAAGCT+TGG | 0.531624 | 5.4:-63981078 | MS.gene80598:CDS |
| AACGTAACGGTATTGAAAGC+TGG | 0.556622 | 5.4:-63983020 | MS.gene80598:CDS |
| AAGTGATGAGGTCGCAAAGA+GGG | 0.561368 | 5.4:+63982947 | None:intergenic |
| GTTGGTCTTCCAATGTCAGC+AGG | 0.563547 | 5.4:+63981675 | None:intergenic |
| ACAATCAGGGGTGGATGCAT+TGG | 0.564604 | 5.4:-63981712 | MS.gene80598:CDS |
| AACTTCAGGTGTTACAATCA+GGG | 0.565741 | 5.4:-63981725 | MS.gene80598:intron |
| TACCAGACCATATGGTTCAA+AGG | 0.567838 | 5.4:-63981353 | MS.gene80598:intron |
| TCACGAAAATTTGGAGCACC+GGG | 0.568649 | 5.4:-63981403 | MS.gene80598:CDS |
| ATAGCTTTCTCTAATCTCGT+TGG | 0.568988 | 5.4:+63981657 | None:intergenic |
| AAAGTCTCTCCATCATTGCC+CGG | 0.570359 | 5.4:+63981385 | None:intergenic |
| TGAACCATATGGTCTGGTAG+AGG | 0.589454 | 5.4:+63981357 | None:intergenic |
| AGGTCGCAAAGAGGGAAGTA+GGG | 0.595122 | 5.4:+63982955 | None:intergenic |
| GCCCGAAGGAGGTGTTTCAA+GGG | 0.597517 | 5.4:-63981106 | MS.gene80598:CDS |
| AAAATGGCAGCGTAACGTAA+CGG | 0.598816 | 5.4:-63983033 | MS.gene80598:CDS |
| GGGTACAGTTATTTCAAGCG+TGG | 0.606991 | 5.4:-63981144 | MS.gene80598:CDS |
| CTTGCTTCACAGTACTAGAA+GGG | 0.612191 | 5.4:-63981164 | MS.gene80598:intron |
| CGATTCAGATGGCCCGAAGG+AGG | 0.620827 | 5.4:-63981117 | MS.gene80598:CDS |
| AACGAGATTAGAGAAAGCTA+TGG | 0.638827 | 5.4:-63981655 | MS.gene80598:CDS |
| TCACGATTCAGATGGCCCGA+AGG | 0.642825 | 5.4:-63981120 | MS.gene80598:CDS |
| ACTTCAGGTGTTACAATCAG+GGG | 0.644911 | 5.4:-63981724 | MS.gene80598:intron |
| TCAGGTGTTACAATCAGGGG+TGG | 0.653709 | 5.4:-63981721 | MS.gene80598:intron |
| CGGGCGATCTCATACTCTAG+AGG | 0.655695 | 5.4:-63982868 | MS.gene80598:intron |
| AGCGTGGATCACGATTCAGA+TGG | 0.657120 | 5.4:-63981128 | MS.gene80598:CDS |
| TGGTCTTAGCATTCTAACTG+TGG | 0.667468 | 5.4:-63981458 | MS.gene80598:CDS |
| GTTTGCGCTTTGAAGTGATG+AGG | 0.670866 | 5.4:+63982935 | None:intergenic |
| GAAGTGATGAGGTCGCAAAG+AGG | 0.715125 | 5.4:+63982946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTTTTTTTATTTTT+GGG | - | chr5.4:63981527-63981546 | MS.gene80598:intron | 0.0% |
| !! | ATTATAATATAAAGTGAAAA+AGG | - | chr5.4:63982070-63982089 | MS.gene80598:intron | 10.0% |
| !! | GGAAAAATTATTATTAATAA+TGG | + | chr5.4:63982023-63982042 | None:intergenic | 10.0% |
| !! | TTATATTATAATTGAAATCT+AGG | + | chr5.4:63982062-63982081 | None:intergenic | 10.0% |
| !! | ATAAAATATCTATCAAATTC+TGG | + | chr5.4:63981773-63981792 | None:intergenic | 15.0% |
| !! | TAAAATATCTATCAAATTCT+GGG | + | chr5.4:63981772-63981791 | None:intergenic | 15.0% |
| !! | TGATTATTACAAGTTTAATT+TGG | - | chr5.4:63983020-63983039 | MS.gene80598:CDS | 15.0% |
| !! | TTTAATTCTGAATGTAAATT+AGG | + | chr5.4:63981387-63981406 | None:intergenic | 15.0% |
| !!! | ATTCTATTCTTTCAATTTTT+TGG | - | chr5.4:63981825-63981844 | MS.gene80598:intron | 15.0% |
| !!! | CTATCATATTTTAATTTTCT+GGG | - | chr5.4:63982107-63982126 | MS.gene80598:intron | 15.0% |
| !!! | GAATTTGATAGATATTTTAT+TGG | - | chr5.4:63981773-63981792 | MS.gene80598:intron | 15.0% |
| !! | AAATCTAGGAAAAAAAAATG+GGG | + | chr5.4:63982048-63982067 | None:intergenic | 20.0% |
| !! | AATACTCAAACATTCAAAAT+TGG | + | chr5.4:63981248-63981267 | None:intergenic | 20.0% |
| !! | ATACTCAAACATTCAAAATT+GGG | + | chr5.4:63981247-63981266 | None:intergenic | 20.0% |
| !! | CCAGAAAATTAAAATATGAT+AGG | + | chr5.4:63982109-63982128 | None:intergenic | 20.0% |
| !! | GAAATCTAGGAAAAAAAAAT+GGG | + | chr5.4:63982049-63982068 | None:intergenic | 20.0% |
| !! | TGAAATCTAGGAAAAAAAAA+TGG | + | chr5.4:63982050-63982069 | None:intergenic | 20.0% |
| !! | TGTAATAATCAGTTATTACA+AGG | + | chr5.4:63983011-63983030 | None:intergenic | 20.0% |
| !!! | CCTATCATATTTTAATTTTC+TGG | - | chr5.4:63982106-63982125 | MS.gene80598:intron | 20.0% |
| !!! | GAAAAATTTTCAAAAATTGC+TGG | - | chr5.4:63981577-63981596 | MS.gene80598:intron | 20.0% |
| ! | AAATCTGTAATACAAGAGTA+TGG | - | chr5.4:63981446-63981465 | MS.gene80598:CDS | 25.0% |
| ! | AATATATGCAGATCTATCAA+AGG | + | chr5.4:63981724-63981743 | None:intergenic | 25.0% |
| ! | AGGAAAACCTAATTTACAAT+TGG | - | chr5.4:63981334-63981353 | MS.gene80598:intron | 25.0% |
| ! | ATGAGATGATAAATTGTGTT+TGG | - | chr5.4:63982227-63982246 | MS.gene80598:intron | 25.0% |
| ! | GAAAAAGCCAATTGTAAATT+AGG | + | chr5.4:63981344-63981363 | None:intergenic | 25.0% |
| ! | TTTAGAAAACCTTCAGAATT+AGG | + | chr5.4:63981308-63981327 | None:intergenic | 25.0% |
| !! | CTTCTATATCAGTAGTTTTT+GGG | - | chr5.4:63982949-63982968 | MS.gene80598:CDS | 25.0% |
| !! | TCTTCTATATCAGTAGTTTT+TGG | - | chr5.4:63982948-63982967 | MS.gene80598:CDS | 25.0% |
| !! | TGATAGATCTGCATATATTT+TGG | - | chr5.4:63981725-63981744 | MS.gene80598:intron | 25.0% |
| !! | TTGATTCTCAATGGTATTTT+AGG | - | chr5.4:63982176-63982195 | MS.gene80598:intron | 25.0% |
| !! | TTTCTTGTCTTCATTTTGTT+CGG | + | chr5.4:63981561-63981580 | None:intergenic | 25.0% |
| !! | TTTTAAACTTTGTCCAACTA+AGG | + | chr5.4:63981970-63981989 | None:intergenic | 25.0% |
| !!! | AATTTTTTGGAAAGTGCTTT+TGG | - | chr5.4:63981838-63981857 | MS.gene80598:intron | 25.0% |
| !!! | ATATATTTTGGCTTGATATC+TGG | - | chr5.4:63981737-63981756 | MS.gene80598:intron | 25.0% |
| !!! | CTCTATTTTTATACCTTAGT+TGG | - | chr5.4:63981954-63981973 | MS.gene80598:intron | 25.0% |
| !!! | GATCATATTTTGATTCTCAA+TGG | - | chr5.4:63982167-63982186 | MS.gene80598:intron | 25.0% |
| !!! | TTACTGGTTTTTGTTTACAT+TGG | - | chr5.4:63981642-63981661 | MS.gene80598:CDS | 25.0% |
| !!! | TTTAATTTTCTGGGAAATGA+AGG | - | chr5.4:63982116-63982135 | MS.gene80598:intron | 25.0% |
| ACTTATACCTTTGAACCATA+TGG | + | chr5.4:63982638-63982657 | None:intergenic | 30.0% | |
| ATAAATGAAGTCAAGAAGCT+TGG | - | chr5.4:63982903-63982922 | MS.gene80598:CDS | 30.0% | |
| TAAGTAATGAACTTTCAGCA+TGG | - | chr5.4:63982653-63982672 | MS.gene80598:intron | 30.0% | |
| TAAGTTATGAATCATTGAGC+AGG | - | chr5.4:63982739-63982758 | MS.gene80598:intron | 30.0% | |
| TCGTAGAGTTTCAAAACATA+AGG | + | chr5.4:63981619-63981638 | None:intergenic | 30.0% | |
| ! | GAAAGCTTTTCACTTTCAAT+AGG | - | chr5.4:63981001-63981020 | MS.gene80598:intron | 30.0% |
| ! | GAAGGTTTTCTAAATAACTC+AGG | - | chr5.4:63981314-63981333 | MS.gene80598:intron | 30.0% |
| ! | TTTTCAGACTCACGAAAATT+TGG | - | chr5.4:63982569-63982588 | MS.gene80598:intron | 30.0% |
| ! | TTTTCCATCTATCAAGATGT+AGG | - | chr5.4:63982478-63982497 | MS.gene80598:intron | 30.0% |
| !! | TGGTTTTTGTTTACATTGGA+GGG | - | chr5.4:63981646-63981665 | MS.gene80598:CDS | 30.0% |
| !!! | TTTGACTTTTGAGATTCATC+TGG | - | chr5.4:63982709-63982728 | MS.gene80598:intron | 30.0% |
| AAACCTTCAGAATTAGGCAT+AGG | + | chr5.4:63981302-63981321 | None:intergenic | 35.0% | |
| AACCTTCAGAATTAGGCATA+GGG | + | chr5.4:63981301-63981320 | None:intergenic | 35.0% | |
| AACGAGATTAGAGAAAGCTA+TGG | - | chr5.4:63982326-63982345 | MS.gene80598:intron | 35.0% | |
| ATAGCTTTCTCTAATCTCGT+TGG | + | chr5.4:63982327-63982346 | None:intergenic | 35.0% | |
| ATCGAGTCTCAGAAAGAAAT+GGG | + | chr5.4:63981071-63981090 | None:intergenic | 35.0% | |
| ATTATCAGTTTCCGAAGACT+GGG | - | chr5.4:63982400-63982419 | MS.gene80598:intron | 35.0% | |
| CTAGGAAAAAAAAATGGGGA+CGG | + | chr5.4:63982044-63982063 | None:intergenic | 35.0% | |
| GAGAAAGCTATGGTTCAATA+TGG | - | chr5.4:63982336-63982355 | MS.gene80598:intron | 35.0% | |
| TACTTGACTGTTTCGTATAC+CGG | + | chr5.4:63982381-63982400 | None:intergenic | 35.0% | |
| TATTATCAGTTTCCGAAGAC+TGG | - | chr5.4:63982399-63982418 | MS.gene80598:intron | 35.0% | |
| TGAAACTCTACGATGTTTAC+TGG | - | chr5.4:63981626-63981645 | MS.gene80598:CDS | 35.0% | |
| TGGTTCAATATGGAACTTGT+CGG | - | chr5.4:63982346-63982365 | MS.gene80598:intron | 35.0% | |
| ! | AACTTCAGGTGTTACAATCA+GGG | - | chr5.4:63982256-63982275 | MS.gene80598:intron | 35.0% |
| ! | TAACTTCAGGTGTTACAATC+AGG | - | chr5.4:63982255-63982274 | MS.gene80598:intron | 35.0% |
| !! | AATTTTCTGGGAAATGAAGG+TGG | - | chr5.4:63982119-63982138 | MS.gene80598:intron | 35.0% |
| !! | CTGGTTTTTGTTTACATTGG+AGG | - | chr5.4:63981645-63981664 | MS.gene80598:CDS | 35.0% |
| !!! | TTGTTGATTTTCCCAGTCTT+CGG | + | chr5.4:63982414-63982433 | None:intergenic | 35.0% |
| !!! | TTTTGGAAAGTGCTTTTGGT+AGG | - | chr5.4:63981842-63981861 | MS.gene80598:intron | 35.0% |
| AAAATGGCAGCGTAACGTAA+CGG | - | chr5.4:63980948-63980967 | MS.gene80598:intron | 40.0% | |
| ACCTTCAGAATTAGGCATAG+GGG | + | chr5.4:63981300-63981319 | None:intergenic | 40.0% | |
| ACTTGCTTCACAGTACTAGA+AGG | - | chr5.4:63982816-63982835 | MS.gene80598:intron | 40.0% | |
| ATGGCATCAGTGTTTAGTAG+TGG | - | chr5.4:63981465-63981484 | MS.gene80598:CDS | 40.0% | |
| ATGTAGGCATGGTTTGAATC+TGG | - | chr5.4:63982494-63982513 | MS.gene80598:intron | 40.0% | |
| CATCTATCAAGATGTAGGCA+TGG | - | chr5.4:63982483-63982502 | MS.gene80598:intron | 40.0% | |
| CATGCCTACATCTTGATAGA+TGG | + | chr5.4:63982485-63982504 | None:intergenic | 40.0% | |
| CTTGCTTCACAGTACTAGAA+GGG | - | chr5.4:63982817-63982836 | MS.gene80598:intron | 40.0% | |
| GATCGAGTCTCAGAAAGAAA+TGG | + | chr5.4:63981072-63981091 | None:intergenic | 40.0% | |
| TACCAGACCATATGGTTCAA+AGG | - | chr5.4:63982628-63982647 | MS.gene80598:intron | 40.0% | |
| TACCTTTGAACCATATGGTC+TGG | + | chr5.4:63982633-63982652 | None:intergenic | 40.0% | |
| TCAATAGTTCCTGCTGACAT+TGG | - | chr5.4:63982297-63982316 | MS.gene80598:intron | 40.0% | |
| TCAATATGGAACTTGTCGGT+TGG | - | chr5.4:63982350-63982369 | MS.gene80598:intron | 40.0% | |
| TCTGAAAAAATGCTCCTACC+TGG | + | chr5.4:63982557-63982576 | None:intergenic | 40.0% | |
| TGCTCTCATTGAGTTATGCA+CGG | - | chr5.4:63982451-63982470 | MS.gene80598:intron | 40.0% | |
| TGGCATCAGTGTTTAGTAGT+GGG | - | chr5.4:63981466-63981485 | MS.gene80598:CDS | 40.0% | |
| ! | AACGTAACGGTATTGAAAGC+TGG | - | chr5.4:63980961-63980980 | MS.gene80598:intron | 40.0% |
| ! | ACTTCAGGTGTTACAATCAG+GGG | - | chr5.4:63982257-63982276 | MS.gene80598:intron | 40.0% |
| ! | CAAGAAGCTTGGTGATCTTA+AGG | - | chr5.4:63982914-63982933 | MS.gene80598:CDS | 40.0% |
| ! | TGGTCTTAGCATTCTAACTG+TGG | - | chr5.4:63982523-63982542 | MS.gene80598:intron | 40.0% |
| ! | TGGTTTGAATCTGGAACAAC+TGG | - | chr5.4:63982503-63982522 | MS.gene80598:intron | 40.0% |
| ! | TGTTTACATTGGAGGGTACA+TGG | - | chr5.4:63981653-63981672 | MS.gene80598:CDS | 40.0% |
| !! | GCAATGATGGAGAGACTTTT+GGG | - | chr5.4:63982600-63982619 | MS.gene80598:intron | 40.0% |
| !! | GTGTTTGGTGATGTAACTTC+AGG | - | chr5.4:63982242-63982261 | MS.gene80598:intron | 40.0% |
| !! | TTTGGCTTGATATCTGGAAG+TGG | - | chr5.4:63981743-63981762 | MS.gene80598:intron | 40.0% |
| AAAGCTTTCCCTCCCTCAAA+AGG | + | chr5.4:63980990-63981009 | None:intergenic | 45.0% | |
| AAAGTCTCTCCATCATTGCC+CGG | + | chr5.4:63982599-63982618 | None:intergenic | 45.0% | |
| AAGTGATGAGGTCGCAAAGA+GGG | + | chr5.4:63981037-63981056 | None:intergenic | 45.0% | |
| CTCATTGAGTTATGCACGGT+TGG | - | chr5.4:63982455-63982474 | MS.gene80598:intron | 45.0% | |
| TCCCCTATGCCTAATTCTGA+AGG | - | chr5.4:63981296-63981315 | MS.gene80598:intron | 45.0% | |
| TGAACCATATGGTCTGGTAG+AGG | + | chr5.4:63982627-63982646 | None:intergenic | 45.0% | |
| ! | AACTTGTCGGTTGGAGAATC+CGG | - | chr5.4:63982359-63982378 | MS.gene80598:intron | 45.0% |
| ! | CTAACTGTGGAACTTTTGCC+AGG | - | chr5.4:63982536-63982555 | MS.gene80598:intron | 45.0% |
| ! | CTCACGAAAATTTGGAGCAC+CGG | - | chr5.4:63982577-63982596 | MS.gene80598:intron | 45.0% |
| ! | GAAAGCTGGTTGCCTTTTGA+GGG | - | chr5.4:63980975-63980994 | MS.gene80598:intron | 45.0% |
| ! | GGGTACAGTTATTTCAAGCG+TGG | - | chr5.4:63982837-63982856 | MS.gene80598:intron | 45.0% |
| ! | TCACGAAAATTTGGAGCACC+GGG | - | chr5.4:63982578-63982597 | MS.gene80598:intron | 45.0% |
| ! | TGAAAGCTGGTTGCCTTTTG+AGG | - | chr5.4:63980974-63980993 | MS.gene80598:intron | 45.0% |
| ! | TGCTGCTGATGCTTGTTGAT+GGG | - | chr5.4:63981182-63981201 | MS.gene80598:intron | 45.0% |
| ! | TTGCTGCTGATGCTTGTTGA+TGG | - | chr5.4:63981181-63981200 | MS.gene80598:intron | 45.0% |
| !! | GGCAATGATGGAGAGACTTT+TGG | - | chr5.4:63982599-63982618 | MS.gene80598:intron | 45.0% |
| !! | GTTTGCGCTTTGAAGTGATG+AGG | + | chr5.4:63981049-63981068 | None:intergenic | 45.0% |
| !!! | GATTTAATTTTTTTTATTTT+TGG | - | chr5.4:63981526-63981545 | MS.gene80598:intron | 5.0% |
| ACAATCAGGGGTGGATGCAT+TGG | - | chr5.4:63982269-63982288 | MS.gene80598:intron | 50.0% | |
| AGCGTGGATCACGATTCAGA+TGG | - | chr5.4:63982853-63982872 | MS.gene80598:intron | 50.0% | |
| AGGTCGCAAAGAGGGAAGTA+GGG | + | chr5.4:63981029-63981048 | None:intergenic | 50.0% | |
| CTCCAATCTTCCATCTGCGA+CGG | - | chr5.4:63981093-63981112 | MS.gene80598:CDS | 50.0% | |
| CTCCCTTGAAACACCTCCTT+CGG | + | chr5.4:63982880-63982899 | None:intergenic | 50.0% | |
| GAAGTGATGAGGTCGCAAAG+AGG | + | chr5.4:63981038-63981057 | None:intergenic | 50.0% | |
| TCCAATCTTCCATCTGCGAC+GGG | - | chr5.4:63981094-63981113 | MS.gene80598:CDS | 50.0% | |
| TCCCTTGAAACACCTCCTTC+GGG | + | chr5.4:63982879-63982898 | None:intergenic | 50.0% | |
| ! | CTGTGGAACTTTTGCCAGGT+AGG | - | chr5.4:63982540-63982559 | MS.gene80598:intron | 50.0% |
| ! | GCTTTTGGTAGGCACGTCAT+TGG | - | chr5.4:63981853-63981872 | MS.gene80598:intron | 50.0% |
| ! | TCAGGTGTTACAATCAGGGG+TGG | - | chr5.4:63982260-63982279 | MS.gene80598:intron | 50.0% |
| !! | GTTGGTCTTCCAATGTCAGC+AGG | + | chr5.4:63982309-63982328 | None:intergenic | 50.0% |
| CGGGCGATCTCATACTCTAG+AGG | - | chr5.4:63981113-63981132 | MS.gene80598:CDS | 55.0% | |
| GAGGTCGCAAAGAGGGAAGT+AGG | + | chr5.4:63981030-63981049 | None:intergenic | 55.0% | |
| GGGACCTCTACCAGACCATA+TGG | - | chr5.4:63982620-63982639 | MS.gene80598:intron | 55.0% | |
| TCACGATTCAGATGGCCCGA+AGG | - | chr5.4:63982861-63982880 | MS.gene80598:intron | 55.0% | |
| !! | AGCTGGTTGCCTTTTGAGGG+AGG | - | chr5.4:63980978-63980997 | MS.gene80598:intron | 55.0% |
| !! | GCCCGAAGGAGGTGTTTCAA+GGG | - | chr5.4:63982875-63982894 | MS.gene80598:CDS | 55.0% |
| !! | GCTGGTTGCCTTTTGAGGGA+GGG | - | chr5.4:63980979-63980998 | MS.gene80598:intron | 55.0% |
| !! | TTTGGAGCACCGGGCAATGA+TGG | - | chr5.4:63982587-63982606 | MS.gene80598:intron | 55.0% |
| ATGAGATCGCCCGTCGCAGA+TGG | + | chr5.4:63981106-63981125 | None:intergenic | 60.0% | |
| CGATTCAGATGGCCCGAAGG+AGG | - | chr5.4:63982864-63982883 | MS.gene80598:intron | 60.0% | |
| GCCCGTCGCAGATGGAAGAT+TGG | + | chr5.4:63981098-63981117 | None:intergenic | 60.0% | |
| !! | GGCCCGAAGGAGGTGTTTCA+AGG | - | chr5.4:63982874-63982893 | MS.gene80598:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 63980937 | 63983066 | 63980937 | ID=MS.gene80598 |
| chr5.4 | mRNA | 63980937 | 63983066 | 63980937 | ID=MS.gene80598.t1;Parent=MS.gene80598 |
| chr5.4 | exon | 63982869 | 63983066 | 63982869 | ID=MS.gene80598.t1.exon1;Parent=MS.gene80598.t1 |
| chr5.4 | CDS | 63982869 | 63983066 | 63982869 | ID=cds.MS.gene80598.t1;Parent=MS.gene80598.t1 |
| chr5.4 | exon | 63981623 | 63981739 | 63981623 | ID=MS.gene80598.t1.exon2;Parent=MS.gene80598.t1 |
| chr5.4 | CDS | 63981623 | 63981739 | 63981623 | ID=cds.MS.gene80598.t1;Parent=MS.gene80598.t1 |
| chr5.4 | exon | 63981354 | 63981503 | 63981354 | ID=MS.gene80598.t1.exon3;Parent=MS.gene80598.t1 |
| chr5.4 | CDS | 63981354 | 63981503 | 63981354 | ID=cds.MS.gene80598.t1;Parent=MS.gene80598.t1 |
| chr5.4 | exon | 63981266 | 63981281 | 63981266 | ID=MS.gene80598.t1.exon4;Parent=MS.gene80598.t1 |
| chr5.4 | CDS | 63981266 | 63981281 | 63981266 | ID=cds.MS.gene80598.t1;Parent=MS.gene80598.t1 |
| chr5.4 | exon | 63981068 | 63981174 | 63981068 | ID=MS.gene80598.t1.exon5;Parent=MS.gene80598.t1 |
| chr5.4 | CDS | 63981068 | 63981174 | 63981068 | ID=cds.MS.gene80598.t1;Parent=MS.gene80598.t1 |
| chr5.4 | exon | 63980937 | 63980951 | 63980937 | ID=MS.gene80598.t1.exon6;Parent=MS.gene80598.t1 |
| chr5.4 | CDS | 63980937 | 63980951 | 63980937 | ID=cds.MS.gene80598.t1;Parent=MS.gene80598.t1 |
| Gene Sequence |
| Protein sequence |
