Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80632.t1 | XP_003616539.1 | 97.2 | 213 | 4 | 2 | 1 | 213 | 1 | 211 | 1.60E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80632.t1 | G7KBU1 | 97.2 | 213 | 4 | 2 | 1 | 213 | 1 | 211 | 1.1e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050194 | MS.gene80632 | 0.808864 | 2.51E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene80632 | 0.831311 | 1.79E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene80632 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene80632 | 0.806597 | 7.61E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene80632 | 0.813227 | 2.85E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene80632 | 0.819862 | 9.29E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80632.t1 | MTR_5g081560 | 97.183 | 213 | 4 | 2 | 1 | 213 | 1 | 211 | 2.06e-152 | 421 |
| MS.gene80632.t1 | MTR_3g069730 | 55.963 | 218 | 69 | 5 | 1 | 213 | 22 | 217 | 5.70e-69 | 210 |
| MS.gene80632.t1 | MTR_7g065920 | 53.202 | 203 | 87 | 5 | 13 | 213 | 38 | 234 | 5.66e-62 | 193 |
| MS.gene80632.t1 | MTR_3g069760 | 53.205 | 156 | 60 | 4 | 59 | 209 | 46 | 193 | 3.77e-41 | 139 |
| MS.gene80632.t1 | MTR_2g016520 | 38.686 | 137 | 65 | 3 | 87 | 211 | 153 | 282 | 3.66e-29 | 110 |
| MS.gene80632.t1 | MTR_4g086500 | 37.778 | 180 | 80 | 5 | 44 | 211 | 150 | 309 | 2.65e-28 | 108 |
| MS.gene80632.t1 | MTR_8g086550 | 37.222 | 180 | 81 | 5 | 44 | 211 | 150 | 309 | 5.08e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80632.t1 | AT5G05830 | 63.580 | 162 | 54 | 3 | 54 | 213 | 45 | 203 | 6.02e-68 | 207 |
| MS.gene80632.t1 | AT5G01070 | 53.077 | 130 | 58 | 1 | 87 | 213 | 75 | 204 | 4.51e-42 | 141 |
| MS.gene80632.t1 | AT2G37950 | 50.769 | 130 | 56 | 3 | 87 | 213 | 81 | 205 | 2.41e-39 | 134 |
| MS.gene80632.t1 | AT5G59000 | 44.937 | 158 | 44 | 5 | 89 | 211 | 80 | 229 | 5.19e-33 | 119 |
| MS.gene80632.t1 | AT2G34200 | 44.944 | 89 | 38 | 2 | 87 | 168 | 99 | 183 | 3.82e-17 | 77.0 |
| MS.gene80632.t1 | AT2G34200 | 44.944 | 89 | 38 | 2 | 87 | 168 | 99 | 183 | 3.82e-17 | 77.0 |
Find 48 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTTGGTTCAAGATTAA+AGG | 0.278430 | 5.4:-64317821 | MS.gene80632:CDS |
| TAGGATTTGTCATCTTAGTA+TGG | 0.302408 | 5.4:-64317930 | MS.gene80632:CDS |
| TTCTGATGTTAAGGTGCATT+TGG | 0.316270 | 5.4:-64317972 | MS.gene80632:CDS |
| GAATTTCCTTCTAGCATGTA+TGG | 0.346946 | 5.4:-64316039 | MS.gene80632:CDS |
| GATATGACAAATCATGAATC+TGG | 0.374563 | 5.4:-64317908 | MS.gene80632:CDS |
| ATAAGGTGGAGAGGGATTGT+AGG | 0.391162 | 5.4:-64317949 | MS.gene80632:CDS |
| CCCTCCATTGTACCACCAAC+TGG | 0.414352 | 5.4:-64316113 | MS.gene80632:CDS |
| TGGTTTAGTTTCTGATGTTA+AGG | 0.416319 | 5.4:-64317981 | MS.gene80632:CDS |
| TTTGATCCTCCTCATTTAAC+CGG | 0.432004 | 5.4:+64318107 | None:intergenic |
| ATAAGCATTGTGCTGAGGCT+TGG | 0.438291 | 5.4:-64317835 | MS.gene80632:CDS |
| ATGTTCTGTGGAGTTGGATC+TGG | 0.449506 | 5.4:-64318011 | MS.gene80632:CDS |
| GATCAAAGGTGTGAGATTGT+AGG | 0.451686 | 5.4:-64318091 | MS.gene80632:CDS |
| TTTCAAAATGCAGGTAAATG+AGG | 0.481861 | 5.4:-64318206 | None:intergenic |
| TCATGAATCTGGAATTCCTA+TGG | 0.482383 | 5.4:-64317897 | MS.gene80632:CDS |
| CGAGTTTCTGATGGTGGTGA+AGG | 0.510573 | 5.4:+64316089 | None:intergenic |
| TCTGGAATTCCTATGGAGCT+TGG | 0.510778 | 5.4:-64317890 | MS.gene80632:CDS |
| TGTTAAGGTGCATTTGGATA+AGG | 0.511468 | 5.4:-64317966 | MS.gene80632:CDS |
| GAGTTGGATCTGGATGGTGG+TGG | 0.514827 | 5.4:-64318001 | MS.gene80632:CDS |
| ATCAGAATGTTCTGTGGAGT+TGG | 0.519699 | 5.4:-64318017 | MS.gene80632:CDS |
| GCATTTGGATAAGGTGGAGA+GGG | 0.524811 | 5.4:-64317957 | MS.gene80632:CDS |
| TAAGGTGCATTTGGATAAGG+TGG | 0.527254 | 5.4:-64317963 | MS.gene80632:CDS |
| CTCCTCATTTAACCGGTCAC+CGG | 0.540911 | 5.4:+64318114 | None:intergenic |
| TCCAGTTGGTGGTACAATGG+AGG | 0.550684 | 5.4:+64316112 | None:intergenic |
| CCAGTTGGTGGTACAATGGA+GGG | 0.553362 | 5.4:+64316113 | None:intergenic |
| CATTTGAACTTCCATAGCAC+CGG | 0.554330 | 5.4:+64316163 | None:intergenic |
| GATGTTCTAACTCCGGTGAC+CGG | 0.563674 | 5.4:-64318126 | MS.gene80632:CDS |
| CTCCGGTGACCGGTTAAATG+AGG | 0.569406 | 5.4:-64318116 | MS.gene80632:CDS |
| ACACAATGTAGCCGGTGCTA+TGG | 0.576578 | 5.4:-64316174 | MS.gene80632:CDS |
| TAGAACATCGTTCATTACTC+CGG | 0.582687 | 5.4:+64318140 | None:intergenic |
| GTGGAGTTGGATCTGGATGG+TGG | 0.585613 | 5.4:-64318004 | MS.gene80632:CDS |
| TCAATTGCACACAATGTAGC+CGG | 0.585989 | 5.4:-64316182 | MS.gene80632:CDS |
| GGTGGTGAAGGTCCAGTTGG+TGG | 0.586158 | 5.4:+64316101 | None:intergenic |
| TGCTCATAAGCATTGTGCTG+AGG | 0.590807 | 5.4:-64317840 | MS.gene80632:CDS |
| TGCATTTGGATAAGGTGGAG+AGG | 0.590996 | 5.4:-64317958 | MS.gene80632:CDS |
| GGTTAAATGAGGAGGATCAA+AGG | 0.593905 | 5.4:-64318105 | MS.gene80632:CDS |
| CTTCACCACCATCAGAAACT+CGG | 0.596501 | 5.4:-64316088 | MS.gene80632:CDS |
| AAATTCCGAGTTTCTGATGG+TGG | 0.598667 | 5.4:+64316083 | None:intergenic |
| AGGTCCAGTTGGTGGTACAA+TGG | 0.605202 | 5.4:+64316109 | None:intergenic |
| AATGAACGATGTTCTAACTC+CGG | 0.609785 | 5.4:-64318133 | MS.gene80632:CDS |
| GATGGTGGTGAAGGTCCAGT+TGG | 0.613111 | 5.4:+64316098 | None:intergenic |
| TAGACAACAATGTATGTCAC+CGG | 0.620225 | 5.4:-64318159 | MS.gene80632:CDS |
| AACAGAACTTGTGAAATCTG+TGG | 0.623786 | 5.4:-64316206 | MS.gene80632:intron |
| CGGTGACCGGTTAAATGAGG+AGG | 0.626754 | 5.4:-64318113 | MS.gene80632:CDS |
| ATCTGAATCAGAATGTTCTG+TGG | 0.636575 | 5.4:-64318023 | MS.gene80632:CDS |
| TCTGTGGAGTTGGATCTGGA+TGG | 0.656978 | 5.4:-64318007 | MS.gene80632:CDS |
| AAGTTACACAGGAATTCAAG+AGG | 0.657142 | 5.4:+64315974 | None:intergenic |
| AGTTACACAGGAATTCAAGA+GGG | 0.673281 | 5.4:+64315975 | None:intergenic |
| CAGTTGGTGGTACAATGGAG+GGG | 0.714794 | 5.4:+64316114 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCAACTAATATATAG+TGG | + | chr5.4:64316464-64316483 | None:intergenic | 15.0% |
| !! | AAATTGAACATATAATTGTA+TGG | - | chr5.4:64317478-64317497 | MS.gene80632:intron | 15.0% |
| !! | AATATATTGAAATCAAAACT+TGG | + | chr5.4:64317568-64317587 | None:intergenic | 15.0% |
| !! | AATGGTTGAAAGAAAAATAT+TGG | - | chr5.4:64317253-64317272 | MS.gene80632:intron | 20.0% |
| !! | AATGTAAAGTGAAATTTGAA+AGG | - | chr5.4:64317796-64317815 | MS.gene80632:intron | 20.0% |
| !! | CAAGTTAAATTGTTTAATGT+TGG | - | chr5.4:64317864-64317883 | MS.gene80632:CDS | 20.0% |
| !! | TGATCATTAATTGTTTAGTT+TGG | + | chr5.4:64316778-64316797 | None:intergenic | 20.0% |
| !!! | ACAATGTATAAGAGTATATT+TGG | - | chr5.4:64316539-64316558 | MS.gene80632:intron | 20.0% |
| !!! | ATGTTTTTGCAAAAATGATT+TGG | - | chr5.4:64316321-64316340 | MS.gene80632:intron | 20.0% |
| ! | AAAAGAAAAAAGAATCCCTT+TGG | - | chr5.4:64317454-64317473 | MS.gene80632:intron | 25.0% |
| ! | AAAGAAAAAAGAATCCCTTT+GGG | - | chr5.4:64317455-64317474 | MS.gene80632:intron | 25.0% |
| ! | AACAAAAATCTTAAGACATC+CGG | + | chr5.4:64316885-64316904 | None:intergenic | 25.0% |
| ! | AAGTCAAATAGCTTAAGATA+AGG | + | chr5.4:64317042-64317061 | None:intergenic | 25.0% |
| ! | ACAAATATGGAACTAAACAT+AGG | - | chr5.4:64316839-64316858 | MS.gene80632:intron | 25.0% |
| ! | ACTACAGGAAGATTAATATA+CGG | - | chr5.4:64317769-64317788 | MS.gene80632:intron | 25.0% |
| ! | ACTTTGTACAATTTCACTAT+AGG | - | chr5.4:64317659-64317678 | MS.gene80632:intron | 25.0% |
| ! | AGATAGAACTGATTATTGAT+AGG | - | chr5.4:64317836-64317855 | MS.gene80632:CDS | 25.0% |
| ! | ATATCTATTGATCAAACTAC+AGG | - | chr5.4:64317754-64317773 | MS.gene80632:intron | 25.0% |
| ! | ATCTACAATTTCATTCAATG+TGG | + | chr5.4:64316514-64316533 | None:intergenic | 25.0% |
| ! | ATTCACAACTTTATTCCAAA+AGG | + | chr5.4:64316413-64316432 | None:intergenic | 25.0% |
| ! | CATTATAATAGAAAGGGTTA+AGG | - | chr5.4:64317226-64317245 | MS.gene80632:intron | 25.0% |
| ! | GAGCTACATTATAATAGAAA+GGG | - | chr5.4:64317220-64317239 | MS.gene80632:intron | 25.0% |
| ! | TATATGTTCAATTTCCCAAA+GGG | + | chr5.4:64317472-64317491 | None:intergenic | 25.0% |
| ! | TGAGCTACATTATAATAGAA+AGG | - | chr5.4:64317219-64317238 | MS.gene80632:intron | 25.0% |
| ! | TTATATGTTCAATTTCCCAA+AGG | + | chr5.4:64317473-64317492 | None:intergenic | 25.0% |
| ! | TTCACAACTTTATTCCAAAA+GGG | + | chr5.4:64316412-64316431 | None:intergenic | 25.0% |
| !! | TTCTTTTTGTGGAAAAATTG+TGG | - | chr5.4:64316997-64317016 | MS.gene80632:intron | 25.0% |
| !!! | AAGATTTTTGTTTGAAGATG+CGG | - | chr5.4:64316893-64316912 | MS.gene80632:intron | 25.0% |
| !!! | ATTGAGCTGATTTTTCAATT+TGG | + | chr5.4:64317414-64317433 | None:intergenic | 25.0% |
| !!! | CTGCTTTTATCTTCAATTAT+GGG | - | chr5.4:64317372-64317391 | MS.gene80632:intron | 25.0% |
| !!! | GGGATTCTTTTTTCTTTTAT+TGG | + | chr5.4:64317452-64317471 | None:intergenic | 25.0% |
| !!! | TTTTACGTAGAATTGATTTG+TGG | - | chr5.4:64316726-64316745 | MS.gene80632:intron | 25.0% |
| AAAAAGCCATGATATGACAA+AGG | + | chr5.4:64318181-64318200 | None:intergenic | 30.0% | |
| ACTATGAAATGTCTTGATAG+TGG | - | chr5.4:64317138-64317157 | MS.gene80632:intron | 30.0% | |
| AGAAAGGGTTAAGGTAATAA+TGG | - | chr5.4:64317235-64317254 | MS.gene80632:intron | 30.0% | |
| AGAGAATCCTAAAACACTTT+AGG | + | chr5.4:64316970-64316989 | None:intergenic | 30.0% | |
| AGCAAATGAATATACTAAGG+AGG | + | chr5.4:64317082-64317101 | None:intergenic | 30.0% | |
| CCATAATTGAAGATAAAAGC+AGG | + | chr5.4:64317374-64317393 | None:intergenic | 30.0% | |
| GATATGACAAATCATGAATC+TGG | - | chr5.4:64316280-64316299 | MS.gene80632:intron | 30.0% | |
| TAGGATCATCACATTATACT+AGG | + | chr5.4:64316951-64316970 | None:intergenic | 30.0% | |
| TAGGATTTGTCATCTTAGTA+TGG | - | chr5.4:64316258-64316277 | MS.gene80632:intron | 30.0% | |
| TTGTGGAAAAATTGTGGATA+AGG | - | chr5.4:64317003-64317022 | MS.gene80632:intron | 30.0% | |
| ! | AACTCAAACATGATGATGTT+GGG | - | chr5.4:64316812-64316831 | MS.gene80632:intron | 30.0% |
| ! | CTCTCATGTTTTTCTTTTTG+TGG | - | chr5.4:64316986-64317005 | MS.gene80632:intron | 30.0% |
| ! | TAACTCAAACATGATGATGT+TGG | - | chr5.4:64316811-64316830 | MS.gene80632:intron | 30.0% |
| ! | TGGTTTAGTTTCTGATGTTA+AGG | - | chr5.4:64316207-64316226 | MS.gene80632:intron | 30.0% |
| ! | TTTTTGCCTTTGTCATATCA+TGG | - | chr5.4:64318172-64318191 | MS.gene80632:CDS | 30.0% |
| !! | CCTGCTTTTATCTTCAATTA+TGG | - | chr5.4:64317371-64317390 | MS.gene80632:intron | 30.0% |
| !! | TGATGATCCTAAAGTGTTTT+AGG | - | chr5.4:64316960-64316979 | MS.gene80632:intron | 30.0% |
| AACAGAACTTGTGAAATCTG+TGG | - | chr5.4:64317982-64318001 | MS.gene80632:CDS | 35.0% | |
| AACTATGCTTGAATCCTAGT+TGG | + | chr5.4:64317308-64317327 | None:intergenic | 35.0% | |
| AATCCTAGTTGGGATGTAAA+TGG | + | chr5.4:64317297-64317316 | None:intergenic | 35.0% | |
| AATGAACGATGTTCTAACTC+CGG | - | chr5.4:64316055-64316074 | MS.gene80632:CDS | 35.0% | |
| ACTATGCTTGAATCCTAGTT+GGG | + | chr5.4:64317307-64317326 | None:intergenic | 35.0% | |
| ATCCTAGTTGGGATGTAAAT+GGG | + | chr5.4:64317296-64317315 | None:intergenic | 35.0% | |
| ATCTGAATCAGAATGTTCTG+TGG | - | chr5.4:64316165-64316184 | MS.gene80632:CDS | 35.0% | |
| CAAAAACCATACATGCTAGA+AGG | + | chr5.4:64318158-64318177 | None:intergenic | 35.0% | |
| CAAAAATTCCGAGTTTCTGA+TGG | + | chr5.4:64318111-64318130 | None:intergenic | 35.0% | |
| GAAGTGAGAGATACATATAC+CGG | - | chr5.4:64316863-64316882 | MS.gene80632:intron | 35.0% | |
| GAATTTCCTTCTAGCATGTA+TGG | - | chr5.4:64318149-64318168 | MS.gene80632:CDS | 35.0% | |
| GGCAGCAAATGAATATACTA+AGG | + | chr5.4:64317085-64317104 | None:intergenic | 35.0% | |
| TAGAACATCGTTCATTACTC+CGG | + | chr5.4:64316051-64316070 | None:intergenic | 35.0% | |
| TAGACAACAATGTATGTCAC+CGG | - | chr5.4:64316029-64316048 | MS.gene80632:CDS | 35.0% | |
| TCAATAGATATACGCGCATT+TGG | + | chr5.4:64317745-64317764 | None:intergenic | 35.0% | |
| TGTGTTTCAATTACTTCTCG+AGG | - | chr5.4:64317603-64317622 | MS.gene80632:intron | 35.0% | |
| TGTTAAGGTGCATTTGGATA+AGG | - | chr5.4:64316222-64316241 | MS.gene80632:intron | 35.0% | |
| TTCTGATGTTAAGGTGCATT+TGG | - | chr5.4:64316216-64316235 | MS.gene80632:intron | 35.0% | |
| TTTCACTATAGGAGCTACTA+AGG | - | chr5.4:64317670-64317689 | MS.gene80632:intron | 35.0% | |
| TTTGATCCTCCTCATTTAAC+CGG | + | chr5.4:64316084-64316103 | None:intergenic | 35.0% | |
| ! | AAATCGATTCACTTCTGTGA+CGG | + | chr5.4:64316570-64316589 | None:intergenic | 35.0% |
| ! | ACCGTATTATCCAAAGCATT+TGG | + | chr5.4:64317106-64317125 | None:intergenic | 35.0% |
| ! | AGTAAGTACTAGTACCCTTT+TGG | - | chr5.4:64316395-64316414 | MS.gene80632:intron | 35.0% |
| ! | CATCAGAAACTCGGAATTTT+TGG | - | chr5.4:64318109-64318128 | MS.gene80632:CDS | 35.0% |
| ! | CTGCTAAGAAGTATGAAACT+TGG | - | chr5.4:64317502-64317521 | MS.gene80632:intron | 35.0% |
| ! | GCCAAATGCTTTGGATAATA+CGG | - | chr5.4:64317102-64317121 | MS.gene80632:intron | 35.0% |
| ! | GCGAATAAAGTGTCAAACTT+AGG | + | chr5.4:64317892-64317911 | None:intergenic | 35.0% |
| ! | GGAGTGTCTGAAAAACAAAA+AGG | - | chr5.4:64316118-64316137 | MS.gene80632:CDS | 35.0% |
| ! | TCATGAATCTGGAATTCCTA+TGG | - | chr5.4:64316291-64316310 | MS.gene80632:intron | 35.0% |
| !! | CGTAGAATTGATTTGTGGAA+TGG | - | chr5.4:64316731-64316750 | MS.gene80632:intron | 35.0% |
| AAATTCCGAGTTTCTGATGG+TGG | + | chr5.4:64318108-64318127 | None:intergenic | 40.0% | |
| ATCAGAATGTTCTGTGGAGT+TGG | - | chr5.4:64316171-64316190 | MS.gene80632:CDS | 40.0% | |
| ATCCCATTTACATCCCAACT+AGG | - | chr5.4:64317291-64317310 | MS.gene80632:intron | 40.0% | |
| CAAAAACATCCAAGCTCCAT+AGG | + | chr5.4:64316310-64316329 | None:intergenic | 40.0% | |
| CATTCTTCAAGTCACTTGTG+TGG | - | chr5.4:64316920-64316939 | MS.gene80632:intron | 40.0% | |
| CATTTGAACTTCCATAGCAC+CGG | + | chr5.4:64318028-64318047 | None:intergenic | 40.0% | |
| GATGTTGGGAGGAACAAATA+TGG | - | chr5.4:64316826-64316845 | MS.gene80632:intron | 40.0% | |
| GGTTAAATGAGGAGGATCAA+AGG | - | chr5.4:64316083-64316102 | MS.gene80632:CDS | 40.0% | |
| TAAGGAGGACAAGCAACAAA+TGG | + | chr5.4:64317067-64317086 | None:intergenic | 40.0% | |
| TAAGGTGCATTTGGATAAGG+TGG | - | chr5.4:64316225-64316244 | MS.gene80632:intron | 40.0% | |
| TCAATTGCACACAATGTAGC+CGG | - | chr5.4:64318006-64318025 | MS.gene80632:CDS | 40.0% | |
| ! | GAGGCTTGGTTCAAGATTAA+AGG | - | chr5.4:64316367-64316386 | MS.gene80632:intron | 40.0% |
| ! | GATCAAAGGTGTGAGATTGT+AGG | - | chr5.4:64316097-64316116 | MS.gene80632:CDS | 40.0% |
| ! | TCAAACATGATGATGTTGGG+AGG | - | chr5.4:64316815-64316834 | MS.gene80632:intron | 40.0% |
| ! | TCATTTGCTGCCAAATGCTT+TGG | - | chr5.4:64317093-64317112 | MS.gene80632:intron | 40.0% |
| !!! | AGAAACTCGGAATTTTTGGC+AGG | - | chr5.4:64318113-64318132 | MS.gene80632:CDS | 40.0% |
| !!! | GAAACTCGGAATTTTTGGCA+GGG | - | chr5.4:64318114-64318133 | MS.gene80632:CDS | 40.0% |
| ATAAGGTGGAGAGGGATTGT+AGG | - | chr5.4:64316239-64316258 | MS.gene80632:intron | 45.0% | |
| ATGTTCTGTGGAGTTGGATC+TGG | - | chr5.4:64316177-64316196 | MS.gene80632:CDS | 45.0% | |
| CTTCACCACCATCAGAAACT+CGG | - | chr5.4:64318100-64318119 | MS.gene80632:CDS | 45.0% | |
| GCATTTGGATAAGGTGGAGA+GGG | - | chr5.4:64316231-64316250 | MS.gene80632:intron | 45.0% | |
| TGCATTTGGATAAGGTGGAG+AGG | - | chr5.4:64316230-64316249 | MS.gene80632:intron | 45.0% | |
| ! | ATAAGCATTGTGCTGAGGCT+TGG | - | chr5.4:64316353-64316372 | MS.gene80632:intron | 45.0% |
| ! | TCTGGAATTCCTATGGAGCT+TGG | - | chr5.4:64316298-64316317 | MS.gene80632:intron | 45.0% |
| ! | TGCTCATAAGCATTGTGCTG+AGG | - | chr5.4:64316348-64316367 | MS.gene80632:intron | 45.0% |
| !!! | GGAATTTTTGGCAGGGACAT+CGG | - | chr5.4:64318121-64318140 | MS.gene80632:CDS | 45.0% |
| CTCCTCATTTAACCGGTCAC+CGG | + | chr5.4:64316077-64316096 | None:intergenic | 50.0% | |
| GATGTTCTAACTCCGGTGAC+CGG | - | chr5.4:64316062-64316081 | MS.gene80632:CDS | 50.0% | |
| TCTGTGGAGTTGGATCTGGA+TGG | - | chr5.4:64316181-64316200 | MS.gene80632:CDS | 50.0% | |
| ! | ACACAATGTAGCCGGTGCTA+TGG | - | chr5.4:64318014-64318033 | MS.gene80632:CDS | 50.0% |
| !! | AGGTCCAGTTGGTGGTACAA+TGG | + | chr5.4:64318082-64318101 | None:intergenic | 50.0% |
| !! | CAGTTGGTGGTACAATGGAG+GGG | + | chr5.4:64318077-64318096 | None:intergenic | 50.0% |
| !! | CCAGTTGGTGGTACAATGGA+GGG | + | chr5.4:64318078-64318097 | None:intergenic | 50.0% |
| !! | CGAGTTTCTGATGGTGGTGA+AGG | + | chr5.4:64318102-64318121 | None:intergenic | 50.0% |
| !! | TCCAGTTGGTGGTACAATGG+AGG | + | chr5.4:64318079-64318098 | None:intergenic | 50.0% |
| CCCTCCATTGTACCACCAAC+TGG | - | chr5.4:64318075-64318094 | MS.gene80632:CDS | 55.0% | |
| CGGTGACCGGTTAAATGAGG+AGG | - | chr5.4:64316075-64316094 | MS.gene80632:CDS | 55.0% | |
| CTCCGGTGACCGGTTAAATG+AGG | - | chr5.4:64316072-64316091 | MS.gene80632:CDS | 55.0% | |
| GTGGAGTTGGATCTGGATGG+TGG | - | chr5.4:64316184-64316203 | MS.gene80632:CDS | 55.0% | |
| ! | GAGTTGGATCTGGATGGTGG+TGG | - | chr5.4:64316187-64316206 | MS.gene80632:CDS | 55.0% |
| ! | GATGGTGGTGAAGGTCCAGT+TGG | + | chr5.4:64318093-64318112 | None:intergenic | 55.0% |
| GGTGGTGAAGGTCCAGTTGG+TGG | + | chr5.4:64318090-64318109 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64315989 | 64318221 | 64315989 | ID=MS.gene80632 |
| chr5.4 | mRNA | 64315989 | 64318221 | 64315989 | ID=MS.gene80632.t1;Parent=MS.gene80632 |
| chr5.4 | exon | 64317815 | 64318221 | 64317815 | ID=MS.gene80632.t1.exon1;Parent=MS.gene80632.t1 |
| chr5.4 | CDS | 64317815 | 64318221 | 64317815 | ID=cds.MS.gene80632.t1;Parent=MS.gene80632.t1 |
| chr5.4 | exon | 64315989 | 64316223 | 64315989 | ID=MS.gene80632.t1.exon2;Parent=MS.gene80632.t1 |
| chr5.4 | CDS | 64315989 | 64316223 | 64315989 | ID=cds.MS.gene80632.t1;Parent=MS.gene80632.t1 |
| Gene Sequence |
| Protein sequence |
