Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80634.t1 | XP_024633593.1 | 92.4 | 170 | 13 | 0 | 1 | 170 | 83 | 252 | 8.40E-85 | 323.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80634.t1 | Q8W4D8 | 76.1 | 163 | 39 | 0 | 8 | 170 | 142 | 304 | 1.1e-69 | 264.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80634.t1 | G7J1A2 | 92.4 | 170 | 13 | 0 | 1 | 170 | 145 | 314 | 6.0e-85 | 323.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene80634 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene80634 | 0.807738 | 4.37E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene80634 | 0.808873 | 2.50E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene80634 | 0.819057 | 1.42E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene80634 | 0.824339 | 8.52E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene80634 | 0.810569 | 1.08E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene80634 | 0.800734 | 1.25E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene80634 | 0.8107 | 1.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80634.t1 | MTR_3g049440 | 92.353 | 170 | 13 | 0 | 1 | 170 | 145 | 314 | 5.25e-118 | 338 |
| MS.gene80634.t1 | MTR_5g081620 | 86.335 | 161 | 6 | 1 | 10 | 170 | 1 | 145 | 1.88e-99 | 284 |
| MS.gene80634.t1 | MTR_3g049440 | 92.174 | 115 | 9 | 0 | 1 | 115 | 145 | 259 | 4.79e-77 | 232 |
| MS.gene80634.t1 | MTR_3g049440 | 92.174 | 115 | 9 | 0 | 1 | 115 | 145 | 259 | 1.16e-76 | 232 |
| MS.gene80634.t1 | MTR_5g081620 | 99.038 | 104 | 1 | 0 | 10 | 113 | 1 | 104 | 1.87e-73 | 218 |
| MS.gene80634.t1 | MTR_7g017500 | 32.800 | 125 | 70 | 3 | 43 | 167 | 143 | 253 | 5.61e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80634.t1 | AT3G20550 | 75.595 | 168 | 41 | 0 | 3 | 170 | 137 | 304 | 1.76e-94 | 278 |
| MS.gene80634.t1 | AT2G24410 | 61.644 | 73 | 27 | 1 | 21 | 93 | 3 | 74 | 2.20e-23 | 89.0 |
Find 38 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTTCATTTGAACTTTC+TGG | 0.086589 | 5.4:-64349875 | MS.gene80634:CDS |
| GAAAAGGATTCTGTATATTT+AGG | 0.202446 | 5.4:-64348665 | MS.gene80634:CDS |
| CCCTTCTTTCCCTTCCAAAA+AGG | 0.236643 | 5.4:+64349493 | None:intergenic |
| CCTACTATTACCAAATTTGA+TGG | 0.278003 | 5.4:+64348954 | None:intergenic |
| CTCGAAAACCTGATATTAAA+TGG | 0.279863 | 5.4:-64349689 | MS.gene80634:CDS |
| TAGAGCCTCCATTTAATATC+AGG | 0.309033 | 5.4:+64349681 | None:intergenic |
| GAGCAGGACACCATCAAATT+TGG | 0.314904 | 5.4:-64348964 | MS.gene80634:CDS |
| AGCAGCCTTCATCTTCATAA+TGG | 0.355827 | 5.4:+64350999 | None:intergenic |
| TTTAGAGTTCAGTAATGAAA+AGG | 0.396102 | 5.4:-64348681 | MS.gene80634:CDS |
| CTGCAATAGGCCTTACATAA+AGG | 0.402214 | 5.4:-64349168 | MS.gene80634:intron |
| CTTCCGAGGTCCTTTATGTA+AGG | 0.410414 | 5.4:+64349158 | None:intergenic |
| ATAATACTGTTGAGGTTCAA+TGG | 0.425610 | 5.4:+64348996 | None:intergenic |
| TTTCCAGAAAGTTCAAATGA+AGG | 0.441530 | 5.4:+64349872 | None:intergenic |
| TCTCATTAGGCAAGTTGAAA+AGG | 0.442861 | 5.4:-64349312 | MS.gene80634:intron |
| AACATGCTGTTATTCAATTC+CGG | 0.445183 | 5.4:-64349431 | MS.gene80634:intron |
| GTCTGAAAGTTTAGAGTTGG+TGG | 0.447686 | 5.4:+64348641 | None:intergenic |
| CTGCAAGATGGATGATCTGT+TGG | 0.448480 | 5.4:+64349459 | None:intergenic |
| CTCAACAGTATTATGAACTT+AGG | 0.458474 | 5.4:-64348987 | MS.gene80634:CDS |
| TAATACTGTTGAGGTTCAAT+GGG | 0.468279 | 5.4:+64348997 | None:intergenic |
| TCAACAGTATTATGAACTTA+GGG | 0.485869 | 5.4:-64348986 | MS.gene80634:CDS |
| AAGACTGGTGAAACGTTGAA+TGG | 0.494545 | 5.4:-64349651 | MS.gene80634:intron |
| CAGGTCTGAAAGTTTAGAGT+TGG | 0.494890 | 5.4:+64348638 | None:intergenic |
| CCATCAAATTTGGTAATAGT+AGG | 0.517156 | 5.4:-64348954 | MS.gene80634:intron |
| CTTTGGCGATGTATATATAG+AGG | 0.523694 | 5.4:+64349522 | None:intergenic |
| GAAGATGAAGGCTGCTGAAG+AGG | 0.536256 | 5.4:-64350992 | MS.gene80634:CDS |
| TGATTCCATTATGAAGATGA+AGG | 0.542927 | 5.4:-64351004 | MS.gene80634:CDS |
| GTATTATGAACTTAGGGAGC+AGG | 0.548892 | 5.4:-64348980 | MS.gene80634:CDS |
| CTAAGTTCATAATACTGTTG+AGG | 0.551437 | 5.4:+64348988 | None:intergenic |
| TGAACTTTCTGGAAAACTTG+CGG | 0.561028 | 5.4:-64349864 | MS.gene80634:CDS |
| GCATGTTGCTTGCTGCAAGA+TGG | 0.571521 | 5.4:+64349447 | None:intergenic |
| TGCAAGATGGATGATCTGTT+GGG | 0.594043 | 5.4:+64349460 | None:intergenic |
| GTTGAAAAGGAGCAATCTGA+TGG | 0.594534 | 5.4:-64349299 | MS.gene80634:CDS |
| CTGCTTTGGCAGGAATGAAG+AGG | 0.621455 | 5.4:-64351028 | MS.gene80634:intron |
| GCTGAAACAAATCGAGTCAG+AGG | 0.632090 | 5.4:-64349842 | MS.gene80634:intron |
| GTATGATAGTAAAGCAAACA+AGG | 0.635651 | 5.4:-64349277 | MS.gene80634:intron |
| GTTGTTCAACGAACCACCAG+AGG | 0.643734 | 5.4:-64349712 | MS.gene80634:CDS |
| GAAAACCTGATATTAAATGG+AGG | 0.649783 | 5.4:-64349686 | MS.gene80634:CDS |
| AGGCCTTACATAAAGGACCT+CGG | 0.670855 | 5.4:-64349161 | MS.gene80634:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAATTTATTCTCATT+AGG | - | chr5.4:64350599-64350618 | MS.gene80634:intron | 10.0% |
| !!! | ATAAATTTCTTTTAGAAAAA+TGG | + | chr5.4:64350369-64350388 | None:intergenic | 10.0% |
| !! | AATCTAAATGAACAATAAAA+AGG | + | chr5.4:64349241-64349260 | None:intergenic | 15.0% |
| !! | AATTGAAATTGTTAAAGTAA+TGG | - | chr5.4:64348720-64348739 | MS.gene80634:intron | 15.0% |
| !!! | AAACAAAATAGTTTTGAAAA+TGG | - | chr5.4:64349522-64349541 | MS.gene80634:CDS | 15.0% |
| !!! | AAATTTTATTATCAAACCTT+TGG | - | chr5.4:64348660-64348679 | MS.gene80634:CDS | 15.0% |
| !!! | AACAAAATAGTTTTGAAAAT+GGG | - | chr5.4:64349523-64349542 | MS.gene80634:CDS | 15.0% |
| !!! | CTAAACAATTTATATTTTTC+AGG | - | chr5.4:64350180-64350199 | MS.gene80634:intron | 15.0% |
| !!! | GAAAATTTTCTTAATTGAAT+TGG | + | chr5.4:64351097-64351116 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAAATATAGAGAT+AGG | + | chr5.4:64348805-64348824 | None:intergenic | 15.0% |
| !! | ATAATTTCTAAACCATAAAG+TGG | + | chr5.4:64349301-64349320 | None:intergenic | 20.0% |
| !! | ATCATAAAGAAACTAATCAA+AGG | + | chr5.4:64350832-64350851 | None:intergenic | 20.0% |
| !! | CATTTAGATTTAGATTCTTA+TGG | - | chr5.4:64349251-64349270 | MS.gene80634:intron | 20.0% |
| !! | CCTAAAATGTTGTAATAATA+AGG | - | chr5.4:64351163-64351182 | MS.gene80634:intron | 20.0% |
| !! | TAAAGTAATGGTAATAAAAC+TGG | - | chr5.4:64348732-64348751 | MS.gene80634:intron | 20.0% |
| !! | TAGTTTGACAATATTAACTA+GGG | - | chr5.4:64349847-64349866 | MS.gene80634:CDS | 20.0% |
| !! | TCAGTAAATTAAAGAAATAC+CGG | + | chr5.4:64350515-64350534 | None:intergenic | 20.0% |
| !! | TCATATATATCACAATTAGT+CGG | - | chr5.4:64348847-64348866 | MS.gene80634:intron | 20.0% |
| !! | TCTTTCTGTATAAACTATAA+AGG | - | chr5.4:64349941-64349960 | MS.gene80634:intron | 20.0% |
| !!! | AATTTCTTTTAGAAAAATGG+AGG | + | chr5.4:64350366-64350385 | None:intergenic | 20.0% |
| !!! | CCTTATTATTACAACATTTT+AGG | + | chr5.4:64351166-64351185 | None:intergenic | 20.0% |
| !!! | TTAGTTTGACAATATTAACT+AGG | - | chr5.4:64349846-64349865 | MS.gene80634:CDS | 20.0% |
| !!! | TTTTGTTTTTCCTTTTTGAA+TGG | + | chr5.4:64349510-64349529 | None:intergenic | 20.0% |
| ! | AATTACCAAAATTAATGCAC+AGG | + | chr5.4:64349088-64349107 | None:intergenic | 25.0% |
| ! | GAAAACCAGATTGAAAATTA+TGG | + | chr5.4:64349401-64349420 | None:intergenic | 25.0% |
| ! | GAAAAGGATTCTGTATATTT+AGG | - | chr5.4:64351259-64351278 | MS.gene80634:intron | 25.0% |
| ! | GGTTTAAGTACTTATTATTG+AGG | - | chr5.4:64351184-64351203 | MS.gene80634:intron | 25.0% |
| ! | TAAAAAGGAACAACTCAATA+TGG | + | chr5.4:64349226-64349245 | None:intergenic | 25.0% |
| ! | TCAACAGTATTATGAACTTA+GGG | - | chr5.4:64350938-64350957 | MS.gene80634:intron | 25.0% |
| ! | TCTGACATTGTATAAACATA+TGG | + | chr5.4:64349751-64349770 | None:intergenic | 25.0% |
| ! | TGAAATCTCACTAACAAATT+TGG | + | chr5.4:64349482-64349501 | None:intergenic | 25.0% |
| ! | TTCTGTATAAACTATAAAGG+AGG | - | chr5.4:64349944-64349963 | MS.gene80634:intron | 25.0% |
| ! | TTTCATTTCACCATTCAAAA+AGG | - | chr5.4:64349497-64349516 | MS.gene80634:CDS | 25.0% |
| !! | TTTAACCTGTGCATTAATTT+TGG | - | chr5.4:64349080-64349099 | MS.gene80634:intron | 25.0% |
| !! | TTTAGAGTTCAGTAATGAAA+AGG | - | chr5.4:64351243-64351262 | MS.gene80634:intron | 25.0% |
| !!! | ACAATGTGCTTTTTTTACAT+AGG | - | chr5.4:64348978-64348997 | MS.gene80634:CDS | 25.0% |
| !!! | CAGTTTTTTTCTTTTCTCAT+TGG | - | chr5.4:64349372-64349391 | MS.gene80634:intron | 25.0% |
| !!! | TTGCATGCAGAAATTTTTTA+CGG | + | chr5.4:64350716-64350735 | None:intergenic | 25.0% |
| AAAACATTCGTTAATGTGAG+TGG | - | chr5.4:64350796-64350815 | MS.gene80634:intron | 30.0% | |
| AAACCTTCATTTGAACTTTC+TGG | - | chr5.4:64350049-64350068 | MS.gene80634:intron | 30.0% | |
| AACATGCTGTTATTCAATTC+CGG | - | chr5.4:64350493-64350512 | MS.gene80634:intron | 30.0% | |
| AATGACATTAGCATTTCACT+TGG | - | chr5.4:64348755-64348774 | MS.gene80634:intron | 30.0% | |
| AGACTACTTGTTTACATGTA+AGG | - | chr5.4:64350109-64350128 | MS.gene80634:intron | 30.0% | |
| AGATAGGAGAAGAGAATATA+AGG | + | chr5.4:64348789-64348808 | None:intergenic | 30.0% | |
| AGGATGTATATTGCTTAGAA+AGG | - | chr5.4:64349964-64349983 | MS.gene80634:intron | 30.0% | |
| AGTATTTCAGAAAAGCAAAC+AGG | + | chr5.4:64350013-64350032 | None:intergenic | 30.0% | |
| ATAATACTGTTGAGGTTCAA+TGG | + | chr5.4:64350931-64350950 | None:intergenic | 30.0% | |
| ATATAGTTGTATCTAGAGAC+TGG | + | chr5.4:64349454-64349473 | None:intergenic | 30.0% | |
| ATCATTACTTTCTCTAACCA+TGG | + | chr5.4:64349721-64349740 | None:intergenic | 30.0% | |
| CCTACTATTACCAAATTTGA+TGG | + | chr5.4:64350973-64350992 | None:intergenic | 30.0% | |
| CTAAGTTCATAATACTGTTG+AGG | + | chr5.4:64350939-64350958 | None:intergenic | 30.0% | |
| CTCAACAGTATTATGAACTT+AGG | - | chr5.4:64350937-64350956 | MS.gene80634:intron | 30.0% | |
| CTCGAAAACCTGATATTAAA+TGG | - | chr5.4:64350235-64350254 | MS.gene80634:intron | 30.0% | |
| GAAAACCTGATATTAAATGG+AGG | - | chr5.4:64350238-64350257 | MS.gene80634:intron | 30.0% | |
| GGATGGAAAACAAACTAAAT+CGG | + | chr5.4:64349700-64349719 | None:intergenic | 30.0% | |
| GGATGTATATTGCTTAGAAA+GGG | - | chr5.4:64349965-64349984 | MS.gene80634:intron | 30.0% | |
| GTATGATAGTAAAGCAAACA+AGG | - | chr5.4:64350647-64350666 | MS.gene80634:intron | 30.0% | |
| TAATACTGTTGAGGTTCAAT+GGG | + | chr5.4:64350930-64350949 | None:intergenic | 30.0% | |
| TGAAATACTCTATCACTTGT+AGG | - | chr5.4:64350024-64350043 | MS.gene80634:intron | 30.0% | |
| TGATTCCATTATGAAGATGA+AGG | - | chr5.4:64348920-64348939 | MS.gene80634:intron | 30.0% | |
| TTAGTCGGTATAGTTTCTAA+TGG | - | chr5.4:64348862-64348881 | MS.gene80634:intron | 30.0% | |
| TTCCAAAAAGGTAACAACTT+TGG | + | chr5.4:64350422-64350441 | None:intergenic | 30.0% | |
| TTTCCAGAAAGTTCAAATGA+AGG | + | chr5.4:64350055-64350074 | None:intergenic | 30.0% | |
| ! | AAAGTTGTTACCTTTTTGGA+AGG | - | chr5.4:64350421-64350440 | MS.gene80634:intron | 30.0% |
| ! | AAGTGTATTTTGTACGATGT+TGG | + | chr5.4:64349677-64349696 | None:intergenic | 30.0% |
| ! | AGTTGATGTTATCACTTATC+AGG | - | chr5.4:64351212-64351231 | MS.gene80634:intron | 30.0% |
| ! | ATTTTGTACGATGTTGGATA+AGG | + | chr5.4:64349671-64349690 | None:intergenic | 30.0% |
| ! | CCATCAAATTTGGTAATAGT+AGG | - | chr5.4:64350970-64350989 | MS.gene80634:intron | 30.0% |
| ! | GGTTACCATAATTTTCAATC+TGG | - | chr5.4:64349393-64349412 | MS.gene80634:intron | 30.0% |
| ! | TATTATCAAACCTTTGGTTC+TGG | - | chr5.4:64348666-64348685 | MS.gene80634:CDS | 30.0% |
| ! | TCTTTGTTTGTTGGTGTTTA+AGG | - | chr5.4:64350548-64350567 | MS.gene80634:intron | 30.0% |
| !! | AAGTTGTTACCTTTTTGGAA+GGG | - | chr5.4:64350422-64350441 | MS.gene80634:intron | 30.0% |
| !! | CTTTAATTTACTGACTCCAT+GGG | - | chr5.4:64350521-64350540 | MS.gene80634:intron | 30.0% |
| !! | TCTTTAATTTACTGACTCCA+TGG | - | chr5.4:64350520-64350539 | MS.gene80634:intron | 30.0% |
| !! | TTTAATTTACTGACTCCATG+GGG | - | chr5.4:64350522-64350541 | MS.gene80634:intron | 30.0% |
| !!! | ACTGATTCTCTTTTTTTCCA+TGG | - | chr5.4:64350675-64350694 | MS.gene80634:intron | 30.0% |
| !!! | ATCTGATACTTTGTTTTTGC+AGG | - | chr5.4:64350899-64350918 | MS.gene80634:intron | 30.0% |
| !!! | TTTAGTTTGTTTTCCATCCA+TGG | - | chr5.4:64349701-64349720 | MS.gene80634:CDS | 30.0% |
| AAACCATAAAGTGGTAACCT+TGG | + | chr5.4:64349292-64349311 | None:intergenic | 35.0% | |
| ACATCTTTGTGATCTGCAAT+AGG | - | chr5.4:64350743-64350762 | MS.gene80634:intron | 35.0% | |
| CTTTGGCGATGTATATATAG+AGG | + | chr5.4:64350405-64350424 | None:intergenic | 35.0% | |
| TAACCAAGGTTACCACTTTA+TGG | - | chr5.4:64349286-64349305 | MS.gene80634:CDS | 35.0% | |
| TAACCATCAGAGAAATGTTG+TGG | + | chr5.4:64349794-64349813 | None:intergenic | 35.0% | |
| TAGAGCCTCCATTTAATATC+AGG | + | chr5.4:64350246-64350265 | None:intergenic | 35.0% | |
| TATCAATAGAAGCCTCGAAA+GGG | + | chr5.4:64349172-64349191 | None:intergenic | 35.0% | |
| TGCAGATCACAAAGATGTTA+GGG | + | chr5.4:64350741-64350760 | None:intergenic | 35.0% | |
| TTACTTTCTCTAACCATGGA+TGG | + | chr5.4:64349717-64349736 | None:intergenic | 35.0% | |
| TTATCAATAGAAGCCTCGAA+AGG | + | chr5.4:64349173-64349192 | None:intergenic | 35.0% | |
| TTGCAGATCACAAAGATGTT+AGG | + | chr5.4:64350742-64350761 | None:intergenic | 35.0% | |
| ! | CGAGGCTTCTATTGATAATT+TGG | - | chr5.4:64349175-64349194 | MS.gene80634:intron | 35.0% |
| ! | TCTCATTAGGCAAGTTGAAA+AGG | - | chr5.4:64350612-64350631 | MS.gene80634:intron | 35.0% |
| ! | TGAACTTTCTGGAAAACTTG+CGG | - | chr5.4:64350060-64350079 | MS.gene80634:intron | 35.0% |
| !! | TGGTGTTTAAGGTTTTCACA+CGG | - | chr5.4:64350559-64350578 | MS.gene80634:intron | 35.0% |
| !! | TTAATTTACTGACTCCATGG+GGG | - | chr5.4:64350523-64350542 | MS.gene80634:intron | 35.0% |
| !!! | TGCTTAGAGCTGTGTTATTT+TGG | - | chr5.4:64349632-64349651 | MS.gene80634:intron | 35.0% |
| AACAAACAAAGAAACCCCCA+TGG | + | chr5.4:64350540-64350559 | None:intergenic | 40.0% | |
| AACAGTGAGCTGAATGAAGT+TGG | - | chr5.4:64350860-64350879 | MS.gene80634:intron | 40.0% | |
| AAGACTGGTGAAACGTTGAA+TGG | - | chr5.4:64350273-64350292 | MS.gene80634:intron | 40.0% | |
| AGCAGCCTTCATCTTCATAA+TGG | + | chr5.4:64348928-64348947 | None:intergenic | 40.0% | |
| CTGCAATAGGCCTTACATAA+AGG | - | chr5.4:64350756-64350775 | MS.gene80634:intron | 40.0% | |
| GGAAGAATCACATCTAACCA+AGG | - | chr5.4:64349272-64349291 | MS.gene80634:intron | 40.0% | |
| GGCTCTTGAAGAAAAACAGA+AGG | - | chr5.4:64348953-64348972 | MS.gene80634:intron | 40.0% | |
| GGTATATGTTGAGTCAACCA+TGG | + | chr5.4:64350695-64350714 | None:intergenic | 40.0% | |
| GTATTATGAACTTAGGGAGC+AGG | - | chr5.4:64350944-64350963 | MS.gene80634:intron | 40.0% | |
| GTTGAAAAGGAGCAATCTGA+TGG | - | chr5.4:64350625-64350644 | MS.gene80634:intron | 40.0% | |
| TCAGAAAAGCAAACAGGAAC+AGG | + | chr5.4:64350007-64350026 | None:intergenic | 40.0% | |
| TGCAAGATGGATGATCTGTT+GGG | + | chr5.4:64350467-64350486 | None:intergenic | 40.0% | |
| TGTCCACAACATTTCTCTGA+TGG | - | chr5.4:64349788-64349807 | MS.gene80634:intron | 40.0% | |
| ! | ATGGGGGTTTCTTTGTTTGT+TGG | - | chr5.4:64350539-64350558 | MS.gene80634:intron | 40.0% |
| ! | CAGGTCTGAAAGTTTAGAGT+TGG | + | chr5.4:64351250-64351231 | None:intergenic | 40.0% |
| ! | CGCCAAAGTTGTTACCTTTT+TGG | - | chr5.4:64350417-64350436 | MS.gene80634:intron | 40.0% |
| ! | GTCTGAAAGTTTAGAGTTGG+TGG | + | chr5.4:64351286-64351305 | None:intergenic | 40.0% |
| ! | TGGCAATTTGATTGCTGCTT+TGG | - | chr5.4:64348882-64348901 | MS.gene80634:intron | 40.0% |
| !! | AATTTGATTGCTGCTTTGGC+AGG | - | chr5.4:64348886-64348905 | MS.gene80634:intron | 40.0% |
| !! | ACCTTTTTGGAAGGGAAAGA+AGG | - | chr5.4:64350430-64350449 | MS.gene80634:intron | 40.0% |
| !! | AGGCTCTATGTTTTCAAGAC+TGG | - | chr5.4:64350258-64350277 | MS.gene80634:intron | 40.0% |
| !! | CCTTTTTGGAAGGGAAAGAA+GGG | - | chr5.4:64350431-64350450 | MS.gene80634:intron | 40.0% |
| !!! | ATGTTTTGTTTGTGCTTCCG+AGG | + | chr5.4:64350783-64350802 | None:intergenic | 40.0% |
| !!! | TCTGGTTTTCACTTCCTCTA+AGG | - | chr5.4:64349411-64349430 | MS.gene80634:intron | 40.0% |
| AGGCCTTACATAAAGGACCT+CGG | - | chr5.4:64350763-64350782 | MS.gene80634:intron | 45.0% | |
| ATCCTTGTGCTTGTGTGGTA+GGG | - | chr5.4:64349036-64349055 | MS.gene80634:intron | 45.0% | |
| CCCTTCTTTCCCTTCCAAAA+AGG | + | chr5.4:64350434-64350453 | None:intergenic | 45.0% | |
| CTGCAAGATGGATGATCTGT+TGG | + | chr5.4:64350468-64350487 | None:intergenic | 45.0% | |
| CTTCCGAGGTCCTTTATGTA+AGG | + | chr5.4:64350769-64350788 | None:intergenic | 45.0% | |
| GAGCAGGACACCATCAAATT+TGG | - | chr5.4:64350960-64350979 | MS.gene80634:intron | 45.0% | |
| GCTGAAACAAATCGAGTCAG+AGG | - | chr5.4:64350082-64350101 | MS.gene80634:intron | 45.0% | |
| TCATCGAGTTCCAGAACCAA+AGG | + | chr5.4:64348679-64348698 | None:intergenic | 45.0% | |
| TCTCATTCTAGCCTCCTTAG+AGG | + | chr5.4:64349428-64349447 | None:intergenic | 45.0% | |
| !! | ATATCAGGTTTTCGAGCCTC+TGG | + | chr5.4:64350231-64350250 | None:intergenic | 45.0% |
| !! | GGTTTTCACTTCCTCTAAGG+AGG | - | chr5.4:64349414-64349433 | MS.gene80634:intron | 45.0% |
| !! | TAAAAAATAAAAAATACAAA+CGG | - | chr5.4:64349554-64349573 | MS.gene80634:intron | 5.0% |
| !!! | TTTGATTTTAAAAAAAATTT+AGG | - | chr5.4:64351046-64351065 | MS.gene80634:intron | 5.0% |
| CATCCTTGTGCTTGTGTGGT+AGG | - | chr5.4:64349035-64349054 | MS.gene80634:intron | 50.0% | |
| CTGCTTTGGCAGGAATGAAG+AGG | - | chr5.4:64348896-64348915 | MS.gene80634:intron | 50.0% | |
| GAAGATGAAGGCTGCTGAAG+AGG | - | chr5.4:64348932-64348951 | MS.gene80634:intron | 50.0% | |
| GTTGTTCAACGAACCACCAG+AGG | - | chr5.4:64350212-64350231 | MS.gene80634:intron | 50.0% | |
| TAGAAGCCTCGAAAGGGACA+TGG | + | chr5.4:64349166-64349185 | None:intergenic | 50.0% | |
| TCCTTGTGCTTGTGTGGTAG+GGG | - | chr5.4:64349037-64349056 | MS.gene80634:intron | 50.0% | |
| TTCTTCGCAGCACTCAGACA+TGG | - | chr5.4:64349320-64349339 | MS.gene80634:intron | 50.0% | |
| ! | GCATGTTGCTTGCTGCAAGA+TGG | + | chr5.4:64350480-64350499 | None:intergenic | 50.0% |
| ACAAGCACAAGGATGCGAGG+AGG | + | chr5.4:64349030-64349049 | None:intergenic | 55.0% | |
| ACCCCTACCACACAAGCACA+AGG | + | chr5.4:64349041-64349060 | None:intergenic | 55.0% | |
| CACACAAGCACAAGGATGCG+AGG | + | chr5.4:64349033-64349052 | None:intergenic | 55.0% | |
| CTCGCATCCTTGTGCTTGTG+TGG | - | chr5.4:64349031-64349050 | MS.gene80634:intron | 55.0% | |
| GCCTCGAAAGGGACATGGTA+AGG | + | chr5.4:64349161-64349180 | None:intergenic | 55.0% | |
| GCCTTACCATGTCCCTTTCG+AGG | - | chr5.4:64349157-64349176 | MS.gene80634:CDS | 55.0% | |
| !! | TCAGGTTTTCGAGCCTCTGG+TGG | + | chr5.4:64350228-64350247 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64348637 | 64351309 | 64348637 | ID=MS.gene80634 |
| chr5.4 | mRNA | 64348637 | 64351309 | 64348637 | ID=MS.gene80634.t1;Parent=MS.gene80634 |
| chr5.4 | exon | 64351305 | 64351309 | 64351305 | ID=MS.gene80634.t1.exon1;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64351305 | 64351309 | 64351305 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64350972 | 64351038 | 64350972 | ID=MS.gene80634.t1.exon2;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64350972 | 64351038 | 64350972 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64349843 | 64349900 | 64349843 | ID=MS.gene80634.t1.exon3;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64349843 | 64349900 | 64349843 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64349652 | 64349744 | 64349652 | ID=MS.gene80634.t1.exon4;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64349652 | 64349744 | 64349652 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64349432 | 64349546 | 64349432 | ID=MS.gene80634.t1.exon5;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64349432 | 64349546 | 64349432 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64349278 | 64349325 | 64349278 | ID=MS.gene80634.t1.exon6;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64349278 | 64349325 | 64349278 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64349136 | 64349181 | 64349136 | ID=MS.gene80634.t1.exon7;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64349136 | 64349181 | 64349136 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64348955 | 64349025 | 64348955 | ID=MS.gene80634.t1.exon8;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64348955 | 64349025 | 64348955 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| chr5.4 | exon | 64348637 | 64348712 | 64348637 | ID=MS.gene80634.t1.exon9;Parent=MS.gene80634.t1 |
| chr5.4 | CDS | 64348637 | 64348712 | 64348637 | ID=cds.MS.gene80634.t1;Parent=MS.gene80634.t1 |
| Gene Sequence |
| Protein sequence |
