AlfalfaGEDB | MS.gene80843

M. sativa cultivar XinJiangDaYe / MS.gene80843

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80843.t1	XP_003620480.1	97.3	328	6	1	1	328	1	325	2.70E-184	654.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80843.t1	Q9FLJ2	75.3	158	35	2	4	157	15	172	4.0e-67	256.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80843.t1	G7KN39	97.3	328	6	1	1	328	1	325	2.0e-184	654.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene80843.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05457	MS.gene80843	0.882777	7.84E-71	-1.69E-46
MS.gene055942	MS.gene80843	0.809239	2.09E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80843.t1	MTR_6g084430	97.256	328	6	1	1	328	1	325	0.0	664
MS.gene80843.t1	MTR_3g435150	57.384	237	88	4	5	229	16	251	1.32e-88	268
MS.gene80843.t1	MTR_4g108760	66.332	199	54	4	4	198	16	205	1.51e-88	270
MS.gene80843.t1	MTR_3g109340	71.429	175	38	2	2	174	19	183	1.78e-86	264
MS.gene80843.t1	MTR_3g109340	71.023	176	38	3	2	174	19	184	1.09e-84	259
MS.gene80843.t1	MTR_1g008740	76.250	160	34	3	2	157	10	169	2.82e-83	256
MS.gene80843.t1	MTR_1g008740	76.250	160	34	3	2	157	24	183	4.74e-83	256
MS.gene80843.t1	MTR_2g078700	75.796	157	32	3	2	152	20	176	6.51e-83	256
MS.gene80843.t1	MTR_6g012670	70.701	157	42	1	5	157	20	176	2.77e-81	249
MS.gene80843.t1	MTR_7g085260	67.665	167	46	3	4	162	16	182	2.67e-77	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80843.t1	AT3G18400	58.407	339	105	12	1	328	1	314	1.35e-118	344
MS.gene80843.t1	AT5G61430	75.316	158	35	2	4	157	15	172	5.90e-85	259
MS.gene80843.t1	AT5G53950	76.923	156	30	3	3	152	15	170	8.32e-84	258
MS.gene80843.t1	AT2G24430	75.472	159	36	2	2	157	13	171	1.66e-83	255
MS.gene80843.t1	AT2G24430	75.472	159	36	2	2	157	13	171	1.66e-83	255
MS.gene80843.t1	AT5G07680	72.152	158	40	2	4	157	2	159	2.70e-82	252
MS.gene80843.t1	AT5G07680	72.152	158	40	2	4	157	16	173	3.66e-82	252
MS.gene80843.t1	AT5G39610	73.750	160	37	2	4	158	19	178	7.48e-82	250
MS.gene80843.t1	AT5G18270	72.549	153	37	2	4	151	20	172	7.22e-80	246
MS.gene80843.t1	AT5G18270	71.895	153	38	2	4	151	20	172	2.45e-79	245

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Find 67 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAGGAAATATTTCG+TGG	0.545961	6.2:-82876130	MS.gene80843:CDS
AAATAACCTGGAAGGTCCCA+AGG	0.580335	6.2:+82877154	None:intergenic
AAGGGGTGAGAAAAGTAATT+GGG	0.515394	6.2:-82876053	MS.gene80843:CDS
AATATTTCGTGGTGGAGTTT+TGG	0.365969	6.2:-82876119	MS.gene80843:CDS
ACAAATTCATCATCTTCATG+TGG	0.605409	6.2:-82875079	MS.gene80843:CDS
ACAAGAGCAACCATTCAATT+TGG	0.264812	6.2:-82874699	MS.gene80843:CDS
ACACCACTTTCGAACTTCAA+AGG	0.552288	6.2:-82876002	MS.gene80843:intron
ACATGAATTTGACAATGAAT+TGG	0.349230	6.2:-82874991	MS.gene80843:CDS
ACCAAATTCATTCACTATTG+AGG	0.421602	6.2:+82875132	None:intergenic
ACCAATCGAGCCACTGAATC+AGG	0.295623	6.2:-82876172	MS.gene80843:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATTCATCATCTTCATG+TGG	-	chr6.2:82876898-82876917	MS.gene80843:intron	30.0%
ACCAAATTCATTCACTATTG+AGG	+	chr6.2:82876848-82876867	None:intergenic	30.0%
ACCAATAATCAACAAAGTCT+TGG	-	chr6.2:82875367-82875386	MS.gene80843:intron	30.0%
ACCTCAATAGTGAATGAATT+TGG	-	chr6.2:82876844-82876863	MS.gene80843:intron	30.0%
AGAGATAGAAAATATCCAAC+TGG	-	chr6.2:82875775-82875794	MS.gene80843:intron	30.0%
ATGAACAAAAATAACCTGGA+AGG	+	chr6.2:82874834-82874853	None:intergenic	30.0%
ATTAGTTACATGGTGTACTT+AGG	+	chr6.2:82875462-82875481	None:intergenic	30.0%
GTGTATAATTCATACAGGTA+AGG	-	chr6.2:82875714-82875733	MS.gene80843:intron	30.0%
TGTTTGTCCTTGAATAATGT+TGG	+	chr6.2:82876929-82876948	None:intergenic	30.0%
TTTGGATTAAGCAAGTTAGA+AGG	+	chr6.2:82877045-82877064	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	82874685	82877314	82874685	ID=MS.gene80843
chr6.2	mRNA	82874685	82877314	82874685	ID=MS.gene80843.t1;Parent=MS.gene80843
chr6.2	exon	82877161	82877314	82877161	ID=MS.gene80843.t1.exon1;Parent=MS.gene80843.t1
chr6.2	CDS	82877161	82877314	82877161	ID=cds.MS.gene80843.t1;Parent=MS.gene80843.t1
chr6.2	exon	82876003	82876268	82876003	ID=MS.gene80843.t1.exon2;Parent=MS.gene80843.t1
chr6.2	CDS	82876003	82876268	82876003	ID=cds.MS.gene80843.t1;Parent=MS.gene80843.t1
chr6.2	exon	82874685	82875251	82874685	ID=MS.gene80843.t1.exon3;Parent=MS.gene80843.t1
chr6.2	CDS	82874685	82875251	82874685	ID=cds.MS.gene80843.t1;Parent=MS.gene80843.t1

Gene Sequence

>MS.gene80843

ATGGAGGAAAATCTACCTCCTGGTTTTAGGTTTCATCCAACAGATGAAGAACTCATCACACACTATCTTACAATGAAAATTTCTGATACTTCCTTCACATCCAAAGCTGTTGCAGTTGTTGATCTCAACAAGTGTGAACCTTGGGACCTTCCAGGTTATTTTTGTTCATATCTCTCTTTCTTAAAAACTATCCCTTTTTTTTGTTATATATATATATATATATATATATATATATATATATATATATATATTGTTTGATTGTAGATTTTCAAGGAGTTTTAGTCTTCGACTAAACTTAATTTAGAAGGATGCAATTTTTTTTTTTTTTTTTGGAAATTATTATTAGAAGGATTGCAACTTGTTGATGAATATATGTGTTTATATATAAACTAATTCAAGATTTGAAGAAATTTTAAATAATAAACAATATTATTAATTACTTTTTTGGTTAATTAAGAGTTAACATCCTTTCTCTTAATTTGTCTATATGATTATTCAATTCAATTTTATTTTTCACTAGCTTAAATTTCTTAACCAATTAATAACTTATATATAAAATTCTCCCAAAAAAAAACTTATATATAAAATTTTATTTTTCTTTGAGGAAATAAAATTAAGCTTTTGTATATATTGATTTGGGAGATGAAAATTGATCATTTATATCTCTTTTTTAGTTTTATAAACCAATAATCAACAAAGTCTTGGTTATTTTGCTTTTATGTCTCTTAATTCATTACTATATAGTAGCTTGACCCATTCTTACTTTGAAAATAACCTAAGTACACCATGTAACTAATTTTCAAAATATAACACACACAAATTCAAAATATATTATGGTATTTCAACTCTTTAAAAAAATTAATGGTTAGTTTGAATAGTAACAAAAGTTGACATTAATTGGTATAGCTACTAGCTGATTCGTTTGCTTATAAAAATAAAGTAACAAACTTGACATTAATTGATATAGCTACTAGATATTTTTTTATTTAGTGAACACAAAATCAATAAATAATTAATCATGTTTGTGTGGTGTATAATTCATACAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTTTTCAGTGTGAGAGATAGAAAATATCCAACTGGACTTAGAACCAATCGAGCCACTGAATCAGGGTATTGGAAAACCACTGGAAAAGATAAGGAAATATTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTAGAAAACAAACACCACTTTCGAACTTCAAAGGTAAGTGCTCTACATTGCATTGCATTGCATTCATTCCCATGTTTTAATATTTTCTTAGTCACATAAAACTCATTTTAGTTTTTACAAGGACAAATGTTAATTAGTATAGTATTATTTTGTTGGTGGTGGATCATCAAACTAATCTCAACTCCTTTACCCAACCATAAGCCATAAGCCATCCTTAAAAACTTTCCATAAAAATTATATGATTACTAATAATCATTTAATTTTAGTAGTCCATAATTAATTTTTATAGTTTTTTTGTACAATCAAAAGTGATATTTGTCAAGATAAAATAACAAATTGAGAAAAAAGTTACGAGACTTTATGGTTCGCTAACATTAACAACTAGTGATTTAAAAACATTTTTTACATTGATATCTACATCGATAAAAAACTCATTTAACATTCAATTTAACAATGATTTAGTGATTGAGTATTTGAAAATTCAATCACTAAATCAGACGCTAGAGGCACTAGAATATTTTGATTACTATGTTGGTCAATACATATCATTATTTTAAAAAAATACAAGATAATTGTTCATCTCAACAGTCTCTTTTCGCCTTGTTAATAAGTAAATAGTTTTTACAACATTTTCACCGTTTTCGAAAATGCAAGACAATCATTCATTTAATAGTCGATTTTCTCTTTGGTAACAAGTCAAATTAACATATATTTTTTTTAAATGGAAAGTGAAAATACTAGATTTCATATATGGTTGAGAATTAACATTTTGCAATTTTTGCAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATATCAACAAAAAAACCACAACAAACATCATTTTCCCAACCAGAATCTCCATGTGACACAACCTCAATAGTGAATGAATTTGGTGATGTTGAGCTTCCAAATCTAAATGGTATTACAAATTCATCATCTTCATGTGGATTCACCAACATTATTCAAGGACAAACATTCAACACTCATGATGATCTCAATAATGTTAACACAAACATGAATTTGACAATGAATTGGCCATCTTCAAGTCATGTTCCATCTCTACCATGGCCTTCTAACTTGCTTAATCCAAATAATATTTCAGTAAATTCATTACTTCTAAAAGCATTACAACTTAGGAATTATCAACATCAAAGAGAAGTTGCAGCTACAAATACTCATTTTGCACCATACATGCCTCAACAAGGAGTAATATCTCATCACCAACTTGGAACTGATCTAAGTAATAATTCAAATGATCTAAGTGCTTCTTCTTCAAAAGTTTTAGAGTGTATGCCACAGCATCAACAAGAGCAACCATTCAATTTGGACTCCATTTGGTGA

Protein sequence

>MS.gene80843.t1

MEENLPPGFRFHPTDEELITHYLTMKISDTSFTSKAVAVVDLNKCEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSISTKKPQQTSFSQPESPCDTTSIVNEFGDVELPNLNGITNSSSSCGFTNIIQGQTFNTHDDLNNVNTNMNLTMNWPSSSHVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQHQREVAATNTHFAPYMPQQGVISHHQLGTDLSNNSNDLSASSSKVLECMPQHQQEQPFNLDSIW