Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81357.t1 | XP_024639804.1 | 93.5 | 538 | 22 | 1 | 1 | 525 | 1 | 538 | 9.90E-152 | 547 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81357.t1 | G7K4J5 | 90.6 | 554 | 23 | 2 | 1 | 525 | 1 | 554 | 4.8e-148 | 534.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052856 | MS.gene81357 | 0.823825 | 1.12E-53 | -1.69E-46 |
| MS.gene055133 | MS.gene81357 | 0.830692 | 2.55E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene81357 | -0.802897 | 4.51E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene81357 | 0.812004 | 5.27E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene81357 | 0.800374 | 1.48E-48 | -1.69E-46 |
| MS.gene060165 | MS.gene81357 | 0.844476 | 7.39E-59 | -1.69E-46 |
| MS.gene060476 | MS.gene81357 | 0.810581 | 1.07E-50 | -1.69E-46 |
| MS.gene060619 | MS.gene81357 | 0.81907 | 1.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81357.t1 | MTR_5g095050 | 89.362 | 564 | 31 | 2 | 1 | 535 | 1 | 564 | 0.0 | 957 |
| MS.gene81357.t1 | MTR_5g094950 | 48.077 | 416 | 137 | 9 | 1 | 392 | 1 | 361 | 2.14e-89 | 285 |
| MS.gene81357.t1 | MTR_5g094970 | 46.064 | 343 | 122 | 6 | 74 | 395 | 5 | 305 | 4.31e-68 | 223 |
| MS.gene81357.t1 | MTR_5g094850 | 36.453 | 406 | 152 | 8 | 3 | 404 | 1 | 304 | 5.76e-51 | 181 |
| MS.gene81357.t1 | MTR_5g094850 | 36.453 | 406 | 152 | 8 | 3 | 404 | 1 | 304 | 2.52e-50 | 180 |
| MS.gene81357.t1 | MTR_5g094920 | 37.621 | 412 | 169 | 11 | 1 | 382 | 1 | 354 | 2.07e-49 | 179 |
| MS.gene81357.t1 | MTR_5g094960 | 37.313 | 335 | 165 | 8 | 1 | 329 | 1 | 296 | 4.65e-39 | 149 |
| MS.gene81357.t1 | MTR_5g094960 | 40.672 | 268 | 127 | 6 | 219 | 462 | 97 | 356 | 5.74e-37 | 143 |
| MS.gene81357.t1 | MTR_5g077500 | 43.534 | 232 | 100 | 4 | 179 | 399 | 40 | 251 | 5.74e-35 | 133 |
| MS.gene81357.t1 | MTR_5g094990 | 46.286 | 175 | 74 | 2 | 252 | 406 | 127 | 301 | 2.60e-33 | 132 |
| MS.gene81357.t1 | MTR_5g094990 | 35.207 | 338 | 162 | 10 | 1 | 329 | 1 | 290 | 4.31e-29 | 120 |
| MS.gene81357.t1 | MTR_5g094910 | 37.500 | 248 | 102 | 6 | 154 | 382 | 30 | 243 | 2.75e-27 | 114 |
| MS.gene81357.t1 | MTR_5g094910 | 30.341 | 323 | 144 | 11 | 1 | 314 | 1 | 251 | 7.68e-11 | 64.3 |
| MS.gene81357.t1 | MTR_5g095390 | 40.625 | 224 | 106 | 6 | 3 | 216 | 1 | 207 | 1.91e-26 | 111 |
| MS.gene81357.t1 | MTR_5g095370 | 35.196 | 179 | 82 | 4 | 1 | 176 | 1 | 148 | 1.47e-17 | 82.4 |
| MS.gene81357.t1 | MTR_1g071620 | 40.441 | 136 | 55 | 3 | 255 | 389 | 65 | 175 | 3.02e-16 | 78.2 |
| MS.gene81357.t1 | MTR_5g095400 | 40.000 | 135 | 64 | 3 | 35 | 166 | 5 | 125 | 1.93e-14 | 76.3 |
| MS.gene81357.t1 | MTR_5g095430 | 38.462 | 130 | 63 | 3 | 40 | 166 | 1 | 116 | 4.68e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCAACACTTCAAGTTCA+TGG | 0.265620 | 5.2:+80143056 | None:intergenic |
| GCTTAAATACTTACATTTGT+AGG | 0.271720 | 5.2:+80141730 | None:intergenic |
| GGAGAAACTCTTAAGGTTAA+AGG | 0.271874 | 5.2:-80143293 | MS.gene81357:CDS |
| TGAAACAGTAAACAAGAATT+TGG | 0.280388 | 5.2:-80142585 | MS.gene81357:CDS |
| ATTTAAGCTCATCAATAGTT+TGG | 0.295375 | 5.2:+80142430 | None:intergenic |
| GACTGGTGAGATGGAGAATA+AGG | 0.296831 | 5.2:-80142693 | MS.gene81357:CDS |
| AGTTGAAGTGTGAGGTTAAT+AGG | 0.300952 | 5.2:-80142769 | MS.gene81357:CDS |
| AGTTGGAGTGTGAGGTTAAT+AGG | 0.300952 | 5.2:-80142937 | MS.gene81357:CDS |
| TGAGATGGAGAATAAGGTTT+TGG | 0.325391 | 5.2:-80142687 | MS.gene81357:CDS |
| TTAATAAGTTGAAGGAAGAT+AGG | 0.328036 | 5.2:-80142838 | MS.gene81357:CDS |
| GTCAAAATCATTACATGTTA+AGG | 0.357681 | 5.2:-80141625 | MS.gene81357:CDS |
| AGCAATACTTGAACAAGATC+TGG | 0.362926 | 5.2:+80143442 | None:intergenic |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.376137 | 5.2:+80141495 | None:intergenic |
| GGAAAGACAACAACTTGAAA+TGG | 0.380275 | 5.2:-80143314 | MS.gene81357:CDS |
| TGAAAGAGTTGAAGGTGTTT+TGG | 0.381818 | 5.2:-80143395 | MS.gene81357:CDS |
| GGTTGAAGTGTGAGGTTGAC+AGG | 0.395371 | 5.2:-80143105 | MS.gene81357:CDS |
| CTTAGAGCAGAATGTTGAAA+TGG | 0.410048 | 5.2:-80143335 | MS.gene81357:CDS |
| ATACTTACATTTGTAGGATC+AGG | 0.410411 | 5.2:+80141736 | None:intergenic |
| TGTAGCACCTTCTGCAAGTC+AGG | 0.411433 | 5.2:-80141800 | MS.gene81357:CDS |
| ATGGAAACTCTTGACTTAGA+AGG | 0.415536 | 5.2:-80143475 | MS.gene81357:CDS |
| GCAACTGGTGCATTTGCAAC+AGG | 0.416299 | 5.2:+80141772 | None:intergenic |
| TTGAAATGGAGAAACTCTTA+AGG | 0.417844 | 5.2:-80143300 | MS.gene81357:CDS |
| TAATAGGTTGAAGGAAGATA+TGG | 0.418849 | 5.2:-80142921 | MS.gene81357:CDS |
| GATCTTGTTCAAGTATTGCT+TGG | 0.420517 | 5.2:-80143439 | MS.gene81357:CDS |
| TTGAAAACCAAGATGATTGC+TGG | 0.423791 | 5.2:-80141519 | MS.gene81357:CDS |
| GCCTGGACCAGCAATCATCT+TGG | 0.434652 | 5.2:+80141512 | None:intergenic |
| AAGGAAGATAGGGTGGAGGA+TGG | 0.446522 | 5.2:-80142827 | MS.gene81357:CDS |
| AAGTTATAATGCTCTCTTGA+AGG | 0.449736 | 5.2:-80143212 | MS.gene81357:CDS |
| GAGTGATGAGCTAGAGTGTG+AGG | 0.452371 | 5.2:-80142861 | MS.gene81357:CDS |
| TCAGCAGCCATAAAATCAAC+TGG | 0.457108 | 5.2:+80142374 | None:intergenic |
| TTTGGAGTTGACAAAGTTGA+AGG | 0.457739 | 5.2:-80142669 | MS.gene81357:CDS |
| TTTGTAGGATCAGGCACATA+AGG | 0.460936 | 5.2:+80141745 | None:intergenic |
| TTGACATATTACTCGCGTCT+TGG | 0.462570 | 5.2:-80142505 | MS.gene81357:CDS |
| AAAGTTAAAGATGCATCATC+AGG | 0.464717 | 5.2:-80142320 | MS.gene81357:intron |
| AGTCAGGTCTAGTCATGTTA+AGG | 0.465936 | 5.2:-80141586 | MS.gene81357:CDS |
| GAAACTTATGAAAGAGTTGA+AGG | 0.466139 | 5.2:-80143403 | MS.gene81357:CDS |
| GTGTGAGGTTAATAGGTTGA+AGG | 0.471254 | 5.2:-80142930 | MS.gene81357:CDS |
| GGCACATAAGGTATTGCAAC+TGG | 0.471489 | 5.2:+80141757 | None:intergenic |
| CACTGTCTTCAATTACCAAT+GGG | 0.473098 | 5.2:+80141475 | None:intergenic |
| GTGTGAGGTTAATAAGTTGA+AGG | 0.473823 | 5.2:-80142846 | MS.gene81357:CDS |
| CTTGAACCTAAAATCGAACC+TGG | 0.474651 | 5.2:-80143562 | MS.gene81357:CDS |
| TTAATAAGTTGAAAGAAGAA+AGG | 0.475430 | 5.2:-80143006 | MS.gene81357:CDS |
| ACCAAGATGATTGCTGGTCC+AGG | 0.475629 | 5.2:-80141513 | MS.gene81357:CDS |
| TCTATCACTAGACCTGACTT+TGG | 0.479541 | 5.2:+80141551 | None:intergenic |
| TTCTAAGAAGGAGAAACGTT+GGG | 0.480244 | 5.2:-80143126 | MS.gene81357:CDS |
| AGCTTAAATGTCTCTGGTGG+TGG | 0.480275 | 5.2:-80142416 | MS.gene81357:CDS |
| AAAGAAGAAAGGGTGGAGGA+TGG | 0.483082 | 5.2:-80142995 | MS.gene81357:CDS |
| ATGTCAAGAAAGCCAAAGTC+AGG | 0.490710 | 5.2:-80141602 | MS.gene81357:CDS |
| TCTGCTCTAAGAGTTGAATC+TGG | 0.493051 | 5.2:+80143347 | None:intergenic |
| CTTGCAGAAGGTGCTACAAT+TGG | 0.498019 | 5.2:+80141805 | None:intergenic |
| ATCAAGAATCACGTGGTTGG+AGG | 0.498362 | 5.2:+80143531 | None:intergenic |
| TTGATGAGCTTAAATGTCTC+TGG | 0.501390 | 5.2:-80142422 | MS.gene81357:CDS |
| AACATGACTAGACCTGACTT+TGG | 0.503870 | 5.2:+80141590 | None:intergenic |
| AAGGAAGATATGGTGGAGGG+TGG | 0.509218 | 5.2:-80142911 | MS.gene81357:CDS |
| TAATAAGTTGAAGGAAGATA+GGG | 0.510480 | 5.2:-80142837 | MS.gene81357:CDS |
| GCGGATGATGGCTGTGAGCT+TGG | 0.513466 | 5.2:-80142731 | MS.gene81357:CDS |
| ACTCTTAAGGTTAAAGGCTG+AGG | 0.519219 | 5.2:-80143287 | MS.gene81357:CDS |
| TAATAAGTTGAAAGAAGAAA+GGG | 0.520930 | 5.2:-80143005 | MS.gene81357:CDS |
| AGAGACGAAGATGATGAAGT+TGG | 0.521296 | 5.2:-80143508 | MS.gene81357:CDS |
| GTTGAAGGAAGATAGGGTGG+AGG | 0.521973 | 5.2:-80142831 | MS.gene81357:CDS |
| AAGAAGAAAGGGTGGAGGAT+GGG | 0.524336 | 5.2:-80142994 | MS.gene81357:CDS |
| TTTCTAAGAAGGAGAAACGT+TGG | 0.528902 | 5.2:-80143127 | MS.gene81357:CDS |
| GGAAGAGTTAAAGAAAAGAG+AGG | 0.532934 | 5.2:-80143266 | MS.gene81357:CDS |
| AGGAAGATAGGGTGGAGGAT+GGG | 0.537473 | 5.2:-80142826 | MS.gene81357:CDS |
| TAGGTTGAAGGAAGATATGG+TGG | 0.538319 | 5.2:-80142918 | MS.gene81357:CDS |
| TGGCAACTATAAGAGAATTG+AGG | 0.540056 | 5.2:-80142565 | MS.gene81357:CDS |
| GAAGATTGTATTGTGTGGGC+TGG | 0.542503 | 5.2:-80142635 | MS.gene81357:CDS |
| TAAGTTGAAGGAAGATAGGG+TGG | 0.544598 | 5.2:-80142834 | MS.gene81357:CDS |
| TGAAGTTGGAGCATTTCCTA+TGG | 0.545820 | 5.2:-80143494 | MS.gene81357:CDS |
| TGGTTGGAGGAAGGTGACCC+AGG | 0.547723 | 5.2:+80143544 | None:intergenic |
| GTGTGAGGTTAATAGGTTGA+CGG | 0.547979 | 5.2:-80142762 | MS.gene81357:CDS |
| AGGAAGATATGGTGGAGGGT+GGG | 0.550407 | 5.2:-80142910 | MS.gene81357:CDS |
| ATTGCTTGGATCTTTACAGA+TGG | 0.550510 | 5.2:-80143425 | MS.gene81357:CDS |
| TCACTGTCTTCAATTACCAA+TGG | 0.555333 | 5.2:+80141474 | None:intergenic |
| GCAATACTTGAACAAGATCT+GGG | 0.555962 | 5.2:+80143443 | None:intergenic |
| CAAAGATGCAAGCAGCCCAT+TGG | 0.565479 | 5.2:-80141490 | MS.gene81357:CDS |
| TCTATCAAGAATCACGTGGT+TGG | 0.566169 | 5.2:+80143528 | None:intergenic |
| TCTGGTGGTGGAAACAATGA+GGG | 0.566395 | 5.2:-80142404 | MS.gene81357:CDS |
| TAAGTTGAAAGAAGAAAGGG+TGG | 0.575684 | 5.2:-80143002 | MS.gene81357:CDS |
| CTCTGGTGGTGGAAACAATG+AGG | 0.577778 | 5.2:-80142405 | MS.gene81357:CDS |
| AGTTGGTCATGTCGAAGTAC+CGG | 0.578493 | 5.2:-80141830 | MS.gene81357:CDS |
| TATAATGCTCTCTTGAAGGA+AGG | 0.584603 | 5.2:-80143208 | MS.gene81357:CDS |
| GAATGGTGAGTTGGAGTGTG+AGG | 0.586676 | 5.2:-80143029 | MS.gene81357:CDS |
| GAGGGTGATGATATTGATGA+AGG | 0.589257 | 5.2:-80141450 | MS.gene81357:CDS |
| GTTGAAAGAAGAAAGGGTGG+AGG | 0.590291 | 5.2:-80142999 | MS.gene81357:CDS |
| AGAATCACGTGGTTGGAGGA+AGG | 0.592347 | 5.2:+80143535 | None:intergenic |
| GATGATATTGATGAAGGTGA+TGG | 0.594476 | 5.2:-80141444 | MS.gene81357:CDS |
| GAAGGTGCTACAATTGGTGC+CGG | 0.596125 | 5.2:+80141811 | None:intergenic |
| TCTAAGTCAAGAGTTTCCAT+AGG | 0.597975 | 5.2:+80143478 | None:intergenic |
| GTTGAAGGAAGATATGGTGG+AGG | 0.598207 | 5.2:-80142915 | MS.gene81357:CDS |
| GAGACAAAAGAATGGTGAGT+TGG | 0.607745 | 5.2:-80143038 | MS.gene81357:CDS |
| TTGAAGGAAGATATGGTGGA+GGG | 0.608134 | 5.2:-80142914 | MS.gene81357:CDS |
| TCTCTTGAAGGAAGGCAAGA+CGG | 0.610347 | 5.2:-80143200 | MS.gene81357:CDS |
| GAATGATGAGTTGGAGTGTG+AGG | 0.613027 | 5.2:-80142945 | MS.gene81357:CDS |
| GTAATTGAAGACAGTGATGA+GGG | 0.618776 | 5.2:-80141468 | MS.gene81357:CDS |
| TAAGTTGACACAAGAAAGTG+AGG | 0.628177 | 5.2:-80143161 | MS.gene81357:CDS |
| AAACGTTGGGTTGAAGTGTG+AGG | 0.632328 | 5.2:-80143113 | MS.gene81357:CDS |
| GGAGGAAGATTGTATTGTGT+GGG | 0.635950 | 5.2:-80142639 | MS.gene81357:CDS |
| GGATCAACCTGACTTGCAGA+AGG | 0.648405 | 5.2:+80141793 | None:intergenic |
| CTGGTGGTGGAAACAATGAG+GGG | 0.648857 | 5.2:-80142403 | MS.gene81357:CDS |
| GAAGTGTTGAGACAAAAGAA+TGG | 0.649570 | 5.2:-80143046 | MS.gene81357:CDS |
| GGGAGGAAGATTGTATTGTG+TGG | 0.661249 | 5.2:-80142640 | MS.gene81357:CDS |
| CGTCTCTATCAAGAATCACG+TGG | 0.663157 | 5.2:+80143524 | None:intergenic |
| GAATGATGAGTTGAAGTGTG+AGG | 0.673142 | 5.2:-80142777 | MS.gene81357:CDS |
| GGTAATTGAAGACAGTGATG+AGG | 0.677445 | 5.2:-80141469 | MS.gene81357:CDS |
| TTGAACCTAAAATCGAACCT+GGG | 0.681572 | 5.2:-80143561 | MS.gene81357:CDS |
| ATGAGCTTAAATGTCTCTGG+TGG | 0.688563 | 5.2:-80142419 | MS.gene81357:CDS |
| TGGTGGTGGAAACAATGAGG+GGG | 0.698952 | 5.2:-80142402 | MS.gene81357:CDS |
| GCAGCCATAAAATCAACTGG+AGG | 0.708098 | 5.2:+80142377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACAAACATTATACATA+AGG | + | chr5.2:80142965-80142984 | None:intergenic | 15.0% |
| !! | ATATAGTGTAAAGAAATTAT+AGG | + | chr5.2:80142915-80142934 | None:intergenic | 15.0% |
| !! | TATAGTGTAAAGAAATTATA+GGG | + | chr5.2:80142914-80142933 | None:intergenic | 15.0% |
| !!! | TTATACATTATTTTAGACTA+GGG | - | chr5.2:80143080-80143099 | MS.gene81357:CDS | 15.0% |
| !!! | TTTATACATTATTTTAGACT+AGG | - | chr5.2:80143079-80143098 | MS.gene81357:CDS | 15.0% |
| !! | ATGAAATCATATATATTCGA+AGG | - | chr5.2:80142871-80142890 | MS.gene81357:CDS | 20.0% |
| !! | TATATATGATTTCATCAATG+AGG | + | chr5.2:80142866-80142885 | None:intergenic | 20.0% |
| !!! | AAACTATTGATTTTCTAAGA+AGG | - | chr5.2:80141861-80141880 | MS.gene81357:intron | 20.0% |
| !!! | ATATTTTATTGTATCTCTAG+TGG | - | chr5.2:80142999-80143018 | MS.gene81357:CDS | 20.0% |
| !!! | TAATAAGTTGAAAGAAGAAA+GGG | - | chr5.2:80141994-80142013 | MS.gene81357:intron | 20.0% |
| !!! | TATTTTATTGTATCTCTAGT+GGG | - | chr5.2:80143000-80143019 | MS.gene81357:CDS | 20.0% |
| !!! | TGTAAGTTATGTATTTTACA+GGG | - | chr5.2:80143339-80143358 | MS.gene81357:CDS | 20.0% |
| !!! | TTAATAAGTTGAAAGAAGAA+AGG | - | chr5.2:80141993-80142012 | MS.gene81357:intron | 20.0% |
| ! | ACATTTCAAGCTAAGATATT+TGG | + | chr5.2:80143121-80143140 | None:intergenic | 25.0% |
| ! | ATTTAAGCTCATCAATAGTT+TGG | + | chr5.2:80142572-80142591 | None:intergenic | 25.0% |
| ! | CATTTCAAGCTAAGATATTT+GGG | + | chr5.2:80143120-80143139 | None:intergenic | 25.0% |
| ! | GCTTAAATACTTACATTTGT+AGG | + | chr5.2:80143272-80143291 | None:intergenic | 25.0% |
| ! | GTCAAAATCATTACATGTTA+AGG | - | chr5.2:80143374-80143393 | MS.gene81357:CDS | 25.0% |
| ! | TGAAACAGTAAACAAGAATT+TGG | - | chr5.2:80142414-80142433 | MS.gene81357:CDS | 25.0% |
| !! | GTATTTTACAGGGAAATAAA+AGG | - | chr5.2:80143349-80143368 | MS.gene81357:CDS | 25.0% |
| !! | GTGTAAGTTATGTATTTTAC+AGG | - | chr5.2:80143338-80143357 | MS.gene81357:CDS | 25.0% |
| !! | TAATAAGTTGAAGGAAGATA+GGG | - | chr5.2:80142162-80142181 | MS.gene81357:intron | 25.0% |
| !! | TGGGTATTGTATTTCTATTA+GGG | - | chr5.2:80143019-80143038 | MS.gene81357:CDS | 25.0% |
| !! | TTAATAAGTTGAAGGAAGAT+AGG | - | chr5.2:80142161-80142180 | MS.gene81357:intron | 25.0% |
| AAAGTTAAAGATGCATCATC+AGG | - | chr5.2:80142679-80142698 | MS.gene81357:CDS | 30.0% | |
| AAATGTTTGGTTAGATTGCT+AGG | - | chr5.2:80142734-80142753 | MS.gene81357:CDS | 30.0% | |
| AAGTTATAATGCTCTCTTGA+AGG | - | chr5.2:80141787-80141806 | MS.gene81357:CDS | 30.0% | |
| ACTACATGCTTCAATAAAAC+AGG | + | chr5.2:80142788-80142807 | None:intergenic | 30.0% | |
| ATACTTACATTTGTAGGATC+AGG | + | chr5.2:80143266-80143285 | None:intergenic | 30.0% | |
| GAAACTTATGAAAGAGTTGA+AGG | - | chr5.2:80141596-80141615 | MS.gene81357:CDS | 30.0% | |
| GACAAAGTTGAAGGAAAAAT+GGG | - | chr5.2:80142339-80142358 | MS.gene81357:CDS | 30.0% | |
| GAGAAAAAAGAATGATGAGT+TGG | - | chr5.2:80142045-80142064 | MS.gene81357:intron | 30.0% | |
| GCTGGAATTGAGATTAAAAA+TGG | - | chr5.2:80142382-80142401 | MS.gene81357:CDS | 30.0% | |
| GGTATGGAATTGAATTCAAT+AGG | - | chr5.2:80142700-80142719 | MS.gene81357:CDS | 30.0% | |
| GGTGTGATCAAATAAATGTT+TGG | - | chr5.2:80142721-80142740 | MS.gene81357:CDS | 30.0% | |
| TCGAAGGTTAAATTAGTAAG+TGG | - | chr5.2:80142887-80142906 | MS.gene81357:CDS | 30.0% | |
| TCTTGCATGAAAAAGTTTCA+AGG | - | chr5.2:80142533-80142552 | MS.gene81357:CDS | 30.0% | |
| TGACAAAGTTGAAGGAAAAA+TGG | - | chr5.2:80142338-80142357 | MS.gene81357:CDS | 30.0% | |
| TTGAAATGGAGAAACTCTTA+AGG | - | chr5.2:80141699-80141718 | MS.gene81357:intron | 30.0% | |
| ! | GGGTATTGTATTTCTATTAG+GGG | - | chr5.2:80143020-80143039 | MS.gene81357:CDS | 30.0% |
| ! | GTGGGTATTGTATTTCTATT+AGG | - | chr5.2:80143018-80143037 | MS.gene81357:CDS | 30.0% |
| ! | TAATAGGTTGAAGGAAGATA+TGG | - | chr5.2:80142078-80142097 | MS.gene81357:intron | 30.0% |
| ! | TAATAGGTTGACGGAAAAAA+CGG | - | chr5.2:80142246-80142265 | MS.gene81357:intron | 30.0% |
| !! | ATAACTTGTTTGAACTTGTG+AGG | - | chr5.2:80142820-80142839 | MS.gene81357:CDS | 30.0% |
| !! | GTTTTATTGAAGCATGTAGT+AGG | - | chr5.2:80142788-80142807 | MS.gene81357:CDS | 30.0% |
| AAAGTTGAAGGAAAAATGGG+AGG | - | chr5.2:80142342-80142361 | MS.gene81357:CDS | 35.0% | |
| AGCAATACTTGAACAAGATC+TGG | + | chr5.2:80141560-80141579 | None:intergenic | 35.0% | |
| AGTTGAAGTGTGAGGTTAAT+AGG | - | chr5.2:80142230-80142249 | MS.gene81357:intron | 35.0% | |
| ATGGAAACTCTTGACTTAGA+AGG | - | chr5.2:80141524-80141543 | MS.gene81357:CDS | 35.0% | |
| ATTGCTTGGATCTTTACAGA+TGG | - | chr5.2:80141574-80141593 | MS.gene81357:CDS | 35.0% | |
| CACTGTCTTCAATTACCAAT+GGG | + | chr5.2:80143527-80143546 | None:intergenic | 35.0% | |
| CTTAGAGCAGAATGTTGAAA+TGG | - | chr5.2:80141664-80141683 | MS.gene81357:intron | 35.0% | |
| GATGATATTGATGAAGGTGA+TGG | - | chr5.2:80143555-80143574 | MS.gene81357:CDS | 35.0% | |
| GCAATACTTGAACAAGATCT+GGG | + | chr5.2:80141559-80141578 | None:intergenic | 35.0% | |
| GGAAAGACAACAACTTGAAA+TGG | - | chr5.2:80141685-80141704 | MS.gene81357:intron | 35.0% | |
| GGAAGAGTTAAAGAAAAGAG+AGG | - | chr5.2:80141733-80141752 | MS.gene81357:intron | 35.0% | |
| GGAGAAACTCTTAAGGTTAA+AGG | - | chr5.2:80141706-80141725 | MS.gene81357:intron | 35.0% | |
| GGGGTTGTATCATATTATGT+AGG | - | chr5.2:80143039-80143058 | MS.gene81357:CDS | 35.0% | |
| GTAATTGAAGACAGTGATGA+GGG | - | chr5.2:80143531-80143550 | MS.gene81357:CDS | 35.0% | |
| TAAAGATGCATCATCAGGTA+TGG | - | chr5.2:80142684-80142703 | MS.gene81357:CDS | 35.0% | |
| TATAATGCTCTCTTGAAGGA+AGG | - | chr5.2:80141791-80141810 | MS.gene81357:CDS | 35.0% | |
| TCACTGTCTTCAATTACCAA+TGG | + | chr5.2:80143528-80143547 | None:intergenic | 35.0% | |
| TCTAAGTCAAGAGTTTCCAT+AGG | + | chr5.2:80141524-80141543 | None:intergenic | 35.0% | |
| TGGCAACTATAAGAGAATTG+AGG | - | chr5.2:80142434-80142453 | MS.gene81357:CDS | 35.0% | |
| TTGAAAACCAAGATGATTGC+TGG | - | chr5.2:80143480-80143499 | MS.gene81357:CDS | 35.0% | |
| TTGAACCTAAAATCGAACCT+GGG | - | chr5.2:80141438-80141457 | MS.gene81357:CDS | 35.0% | |
| TTGATGAGCTTAAATGTCTC+TGG | - | chr5.2:80142577-80142596 | MS.gene81357:CDS | 35.0% | |
| ! | GATCTTGTTCAAGTATTGCT+TGG | - | chr5.2:80141560-80141579 | MS.gene81357:CDS | 35.0% |
| ! | GTGTGAGGTTAATAAGTTGA+AGG | - | chr5.2:80141985-80142004 | MS.gene81357:intron | 35.0% |
| ! | TAAGTTGAAAGAAGAAAGGG+TGG | - | chr5.2:80141997-80142016 | MS.gene81357:intron | 35.0% |
| ! | TAAGTTGACACAAGAAAGTG+AGG | - | chr5.2:80141838-80141857 | MS.gene81357:intron | 35.0% |
| ! | TGACAGGTTGAACGAAAAAA+GGG | - | chr5.2:80141910-80141929 | MS.gene81357:intron | 35.0% |
| ! | TGAGATGGAGAATAAGGTTT+TGG | - | chr5.2:80142312-80142331 | MS.gene81357:intron | 35.0% |
| ! | TTCTAAGAAGGAGAAACGTT+GGG | - | chr5.2:80141873-80141892 | MS.gene81357:intron | 35.0% |
| ! | TTGACAGGTTGAACGAAAAA+AGG | - | chr5.2:80141909-80141928 | MS.gene81357:intron | 35.0% |
| ! | TTTCTAAGAAGGAGAAACGT+TGG | - | chr5.2:80141872-80141891 | MS.gene81357:intron | 35.0% |
| ! | TTTGGAGTTGACAAAGTTGA+AGG | - | chr5.2:80142330-80142349 | MS.gene81357:CDS | 35.0% |
| !! | GAAGTGTTGAGACAAAAGAA+TGG | - | chr5.2:80141953-80141972 | MS.gene81357:intron | 35.0% |
| !!! | TGAAAGAGTTGAAGGTGTTT+TGG | - | chr5.2:80141604-80141623 | MS.gene81357:CDS | 35.0% |
| AAACAGGAAAATCACGTTCC+AGG | + | chr5.2:80142772-80142791 | None:intergenic | 40.0% | |
| AACATGACTAGACCTGACTT+TGG | + | chr5.2:80143412-80143431 | None:intergenic | 40.0% | |
| ACTCTTAAGGTTAAAGGCTG+AGG | - | chr5.2:80141712-80141731 | MS.gene81357:intron | 40.0% | |
| ACTTGTGAGGCTACTAGTAA+TGG | - | chr5.2:80142833-80142852 | MS.gene81357:CDS | 40.0% | |
| AGAGACGAAGATGATGAAGT+TGG | - | chr5.2:80141491-80141510 | MS.gene81357:CDS | 40.0% | |
| AGTCAGGTCTAGTCATGTTA+AGG | - | chr5.2:80143413-80143432 | MS.gene81357:CDS | 40.0% | |
| AGTTGGAGTGTGAGGTTAAT+AGG | - | chr5.2:80141978-80141997 | MS.gene81357:intron | 40.0% | |
| ATGAGCTTAAATGTCTCTGG+TGG | - | chr5.2:80142580-80142599 | MS.gene81357:CDS | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | - | chr5.2:80143397-80143416 | MS.gene81357:CDS | 40.0% | |
| ATGTCGCAAAAACCAAAGTC+AGG | - | chr5.2:80143436-80143455 | MS.gene81357:CDS | 40.0% | |
| CTTGAACCTAAAATCGAACC+TGG | - | chr5.2:80141437-80141456 | MS.gene81357:CDS | 40.0% | |
| GAGAAAAATGACTGGTGAGA+TGG | - | chr5.2:80142297-80142316 | MS.gene81357:intron | 40.0% | |
| GAGACAAAAGAATGGTGAGT+TGG | - | chr5.2:80141961-80141980 | MS.gene81357:intron | 40.0% | |
| GAGGGTGATGATATTGATGA+AGG | - | chr5.2:80143549-80143568 | MS.gene81357:CDS | 40.0% | |
| GCATGAAAAAGTTTCAAGGC+TGG | - | chr5.2:80142537-80142556 | MS.gene81357:CDS | 40.0% | |
| GGAGGAAGATTGTATTGTGT+GGG | - | chr5.2:80142360-80142379 | MS.gene81357:CDS | 40.0% | |
| GGTAATTGAAGACAGTGATG+AGG | - | chr5.2:80143530-80143549 | MS.gene81357:CDS | 40.0% | |
| GTTTGGTTAGATTGCTAGGT+AGG | - | chr5.2:80142738-80142757 | MS.gene81357:CDS | 40.0% | |
| TCAGCAGCCATAAAATCAAC+TGG | + | chr5.2:80142628-80142647 | None:intergenic | 40.0% | |
| TCTATCAAGAATCACGTGGT+TGG | + | chr5.2:80141474-80141493 | None:intergenic | 40.0% | |
| TCTATCACTAGACCTGACTT+TGG | + | chr5.2:80143451-80143470 | None:intergenic | 40.0% | |
| TGAAAAAGTTTCAAGGCTGG+AGG | - | chr5.2:80142540-80142559 | MS.gene81357:CDS | 40.0% | |
| TTGACATATTACTCGCGTCT+TGG | - | chr5.2:80142494-80142513 | MS.gene81357:CDS | 40.0% | |
| TTTGTAGGATCAGGCACATA+AGG | + | chr5.2:80143257-80143276 | None:intergenic | 40.0% | |
| ! | GAATGATGAGTTGAAGTGTG+AGG | - | chr5.2:80142222-80142241 | MS.gene81357:intron | 40.0% |
| ! | GTCTCAACACTTCAAGTTCA+TGG | + | chr5.2:80141946-80141965 | None:intergenic | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+AGG | - | chr5.2:80142069-80142088 | MS.gene81357:intron | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+CGG | - | chr5.2:80142069-80142088 | MS.gene81357:intron | 40.0% |
| ! | TAAGTTGAAGGAAGATAGGG+TGG | - | chr5.2:80142165-80142184 | MS.gene81357:intron | 40.0% |
| ! | TAGGTTGAAGGAAGATATGG+TGG | - | chr5.2:80142081-80142100 | MS.gene81357:intron | 40.0% |
| ! | TGAAGTTGGAGCATTTCCTA+TGG | - | chr5.2:80141505-80141524 | MS.gene81357:CDS | 40.0% |
| ! | TTGAAGGAAGATATGGTGGA+GGG | - | chr5.2:80142085-80142104 | MS.gene81357:intron | 40.0% |
| !! | GGATCCTCCAGTTGATTTTA+TGG | - | chr5.2:80142618-80142637 | MS.gene81357:CDS | 40.0% |
| !! | GTTTTGGTGAGAAGGGATTT+GGG | - | chr5.2:80141620-80141639 | MS.gene81357:CDS | 40.0% |
| !! | TCTGCTCTAAGAGTTGAATC+TGG | + | chr5.2:80141655-80141674 | None:intergenic | 40.0% |
| !!! | CAGGTTCGATTTTAGGTTCA+AGG | + | chr5.2:80141439-80141458 | None:intergenic | 40.0% |
| !!! | TGAAGGTGTTTTGGTGAGAA+GGG | - | chr5.2:80141613-80141632 | MS.gene81357:CDS | 40.0% |
| !!! | TGTTTTGGTGAGAAGGGATT+TGG | - | chr5.2:80141619-80141638 | MS.gene81357:CDS | 40.0% |
| !!! | TTGAAGGTGTTTTGGTGAGA+AGG | - | chr5.2:80141612-80141631 | MS.gene81357:CDS | 40.0% |
| AAAGAAGAAAGGGTGGAGGA+TGG | - | chr5.2:80142004-80142023 | MS.gene81357:intron | 45.0% | |
| AACGAAAAAAGGGAGGAGGA+AGG | - | chr5.2:80141920-80141939 | MS.gene81357:intron | 45.0% | |
| AAGAAGAAAGGGTGGAGGAT+GGG | - | chr5.2:80142005-80142024 | MS.gene81357:intron | 45.0% | |
| AGATTGCTAGGTAGGTAGCT+TGG | - | chr5.2:80142746-80142765 | MS.gene81357:CDS | 45.0% | |
| AGCTTAAATGTCTCTGGTGG+TGG | - | chr5.2:80142583-80142602 | MS.gene81357:CDS | 45.0% | |
| AGTTGGTCATGTCGAAGTAC+CGG | - | chr5.2:80143169-80143188 | MS.gene81357:CDS | 45.0% | |
| ATCAAGAATCACGTGGTTGG+AGG | + | chr5.2:80141471-80141490 | None:intergenic | 45.0% | |
| ATTCACTCACACACACACAC+AGG | + | chr5.2:80143300-80143319 | None:intergenic | 45.0% | |
| CGTCTCTATCAAGAATCACG+TGG | + | chr5.2:80141478-80141497 | None:intergenic | 45.0% | |
| GAAGATTGTATTGTGTGGGC+TGG | - | chr5.2:80142364-80142383 | MS.gene81357:CDS | 45.0% | |
| GACTGGTGAGATGGAGAATA+AGG | - | chr5.2:80142306-80142325 | MS.gene81357:intron | 45.0% | |
| GCAGCCATAAAATCAACTGG+AGG | + | chr5.2:80142625-80142644 | None:intergenic | 45.0% | |
| GGGAGGAAGATTGTATTGTG+TGG | - | chr5.2:80142359-80142378 | MS.gene81357:CDS | 45.0% | |
| GGTGTGCAGAGAAAAATGAC+TGG | - | chr5.2:80142289-80142308 | MS.gene81357:intron | 45.0% | |
| GTTGAAAGAAGAAAGGGTGG+AGG | - | chr5.2:80142000-80142019 | MS.gene81357:intron | 45.0% | |
| GTTGAACGAAAAAAGGGAGG+AGG | - | chr5.2:80141916-80141935 | MS.gene81357:intron | 45.0% | |
| GTTGAAGGAAGATATGGTGG+AGG | - | chr5.2:80142084-80142103 | MS.gene81357:intron | 45.0% | |
| TCTCTTGAAGGAAGGCAAGA+CGG | - | chr5.2:80141799-80141818 | MS.gene81357:CDS | 45.0% | |
| ! | CAGGTTGAACGAAAAAAGGG+AGG | - | chr5.2:80141913-80141932 | MS.gene81357:intron | 45.0% |
| ! | GAATGATGAGTTGGAGTGTG+AGG | - | chr5.2:80142054-80142073 | MS.gene81357:intron | 45.0% |
| ! | TAGGTTGACGGAAAAAACGG+CGG | - | chr5.2:80142249-80142268 | MS.gene81357:intron | 45.0% |
| !! | AAACGTTGGGTTGAAGTGTG+AGG | - | chr5.2:80141886-80141905 | MS.gene81357:intron | 45.0% |
| !! | CTTGCAGAAGGTGCTACAAT+TGG | + | chr5.2:80143197-80143216 | None:intergenic | 45.0% |
| !! | GGCACATAAGGTATTGCAAC+TGG | + | chr5.2:80143245-80143264 | None:intergenic | 45.0% |
| !! | TCTGGTGGTGGAAACAATGA+GGG | - | chr5.2:80142595-80142614 | MS.gene81357:CDS | 45.0% |
| AAGGAAGATAGGGTGGAGGA+TGG | - | chr5.2:80142172-80142191 | MS.gene81357:intron | 50.0% | |
| ACCAAGATGATTGCTGGTCC+AGG | - | chr5.2:80143486-80143505 | MS.gene81357:CDS | 50.0% | |
| ACGGAAAAAACGGCGGATGA+TGG | - | chr5.2:80142256-80142275 | MS.gene81357:intron | 50.0% | |
| AGAATCACGTGGTTGGAGGA+AGG | + | chr5.2:80141467-80141486 | None:intergenic | 50.0% | |
| AGGAAGATAGGGTGGAGGAT+GGG | - | chr5.2:80142173-80142192 | MS.gene81357:intron | 50.0% | |
| CAAAGATGCAAGCAGCCCAT+TGG | - | chr5.2:80143509-80143528 | MS.gene81357:CDS | 50.0% | |
| CTGCATTGTTCTGCACCAGT+TGG | - | chr5.2:80143152-80143171 | MS.gene81357:CDS | 50.0% | |
| GAGTGATGAGCTAGAGTGTG+AGG | - | chr5.2:80142138-80142157 | MS.gene81357:intron | 50.0% | |
| GCAACTGGTGCATTTGCAAC+AGG | + | chr5.2:80143230-80143249 | None:intergenic | 50.0% | |
| GGTACTTCGACATGACCAAC+TGG | + | chr5.2:80143170-80143189 | None:intergenic | 50.0% | |
| GGTTGAAGTGTGAGGTTGAC+AGG | - | chr5.2:80141894-80141913 | MS.gene81357:intron | 50.0% | |
| GTTGAAGGAAGATAGGGTGG+AGG | - | chr5.2:80142168-80142187 | MS.gene81357:intron | 50.0% | |
| TGTAGCACCTTCTGCAAGTC+AGG | - | chr5.2:80143199-80143218 | MS.gene81357:CDS | 50.0% | |
| ! | AAGGAAGATATGGTGGAGGG+TGG | - | chr5.2:80142088-80142107 | MS.gene81357:intron | 50.0% |
| ! | AGGAAGATATGGTGGAGGGT+GGG | - | chr5.2:80142089-80142108 | MS.gene81357:intron | 50.0% |
| ! | GAATGGTGAGTTGGAGTGTG+AGG | - | chr5.2:80141970-80141989 | MS.gene81357:intron | 50.0% |
| ! | GGATCAACCTGACTTGCAGA+AGG | + | chr5.2:80143209-80143228 | None:intergenic | 50.0% |
| ! | GGTGACCCAGGTTCGATTTT+AGG | + | chr5.2:80141446-80141465 | None:intergenic | 50.0% |
| !! | CTCTGGTGGTGGAAACAATG+AGG | - | chr5.2:80142594-80142613 | MS.gene81357:CDS | 50.0% |
| !! | CTGGTGGTGGAAACAATGAG+GGG | - | chr5.2:80142596-80142615 | MS.gene81357:CDS | 50.0% |
| !! | GAAGGTGCTACAATTGGTGC+CGG | + | chr5.2:80143191-80143210 | None:intergenic | 50.0% |
| !! | TGGTGGTGGAAACAATGAGG+GGG | - | chr5.2:80142597-80142616 | MS.gene81357:CDS | 50.0% |
| GCCTGGACCAGCAATCATCT+TGG | + | chr5.2:80143490-80143509 | None:intergenic | 55.0% | |
| GCTAGGTAGGTAGCTTGGCC+TGG | - | chr5.2:80142751-80142770 | MS.gene81357:CDS | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | + | chr5.2:80143507-80143526 | None:intergenic | 60.0% | |
| TGGTTGGAGGAAGGTGACCC+AGG | + | chr5.2:80141458-80141477 | None:intergenic | 60.0% | |
| ! | GCGGATGATGGCTGTGAGCT+TGG | - | chr5.2:80142268-80142287 | MS.gene81357:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80141431 | 80143590 | 80141431 | ID=MS.gene81357 |
| chr5.2 | mRNA | 80141431 | 80143590 | 80141431 | ID=MS.gene81357.t1;Parent=MS.gene81357 |
| chr5.2 | exon | 80142321 | 80143590 | 80142321 | ID=MS.gene81357.t1.exon1;Parent=MS.gene81357.t1 |
| chr5.2 | CDS | 80142321 | 80143590 | 80142321 | ID=cds.MS.gene81357.t1;Parent=MS.gene81357.t1 |
| chr5.2 | exon | 80141744 | 80141850 | 80141744 | ID=MS.gene81357.t1.exon2;Parent=MS.gene81357.t1 |
| chr5.2 | CDS | 80141744 | 80141850 | 80141744 | ID=cds.MS.gene81357.t1;Parent=MS.gene81357.t1 |
| chr5.2 | exon | 80141431 | 80141661 | 80141431 | ID=MS.gene81357.t1.exon3;Parent=MS.gene81357.t1 |
| chr5.2 | CDS | 80141431 | 80141661 | 80141431 | ID=cds.MS.gene81357.t1;Parent=MS.gene81357.t1 |
| Gene Sequence |
| Protein sequence |
