AlfalfaGEDB | MS.gene81367

M. sativa cultivar XinJiangDaYe / MS.gene81367

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81367.t1	RHN57948.1	84	94	15	0	56	149	323	416	8.30E-33	151

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81367.t1	G7K4I5	84.0	94	15	0	56	149	323	416	6.0e-33	151.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054185	MS.gene81367	0.801439	9.00E-49	-1.69E-46
MS.gene057754	MS.gene81367	0.819332	1.23E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81367.t1	MTR_5g094950	67.692	130	20	2	40	147	285	414	1.34e-37	139
MS.gene81367.t1	MTR_5g094970	53.750	80	15	2	40	97	226	305	1.24e-14	73.2
MS.gene81367.t1	MTR_5g094960	31.579	190	100	4	47	210	246	431	9.20e-14	71.2
MS.gene81367.t1	MTR_5g094990	42.982	114	47	3	47	144	240	351	1.48e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 44 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAATATTGAGCTGA+GGG	0.483756	5.2:-80067852	None:intergenic
AATGTTGGTGGCAATGAGGT+TGG	0.498941	5.2:+80067340	MS.gene81367:CDS
AGAGAATGTTGGTGGCAATG+AGG	0.682533	5.2:+80067336	MS.gene81367:CDS
AGAGTTGCAAGGTTGGAGGA+TGG	0.597876	5.2:+80067256	MS.gene81367:CDS
AGGCATCTACACTCATTGAA+AGG	0.614901	5.2:-80067285	None:intergenic
AGTGTAGATGCCTCTGGTGG+TGG	0.536824	5.2:+80067295	MS.gene81367:CDS
ATCTACACTCATTGAAAGGT+TGG	0.545608	5.2:-80067281	None:intergenic
ATGAGTGTAGATGCCTCTGG+TGG	0.681194	5.2:+80067292	MS.gene81367:CDS
ATTCCAGCCAAAGCACGTAT+TGG	0.465538	5.2:-80067145	None:intergenic
CACTCTTATGGAGTAGTTGC+CGG	0.420211	5.2:+80067415	MS.gene81367:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGAAAGAAAAAAGGGT+TGG	-	chr5.2:80067758-80067777	None:intergenic	30.0%
GAAATTGAAGCAAAAAATGG+TGG	-	chr5.2:80067590-80067609	None:intergenic	30.0%
GAACGAAAACAGAAAATTAG+TGG	-	chr5.2:80067047-80067066	None:intergenic	30.0%
GATATGCTAAAAACAAAGAG+TGG	-	chr5.2:80067634-80067653	None:intergenic	30.0%
GATGATAGTAATGCTCTTAA+TGG	-	chr5.2:80067475-80067494	None:intergenic	30.0%
AAAAACAAAGAGTGGTGAGT+TGG	-	chr5.2:80067626-80067645	None:intergenic	35.0%
AAAGAGGAATATTGAGCTGA+GGG	-	chr5.2:80067855-80067874	None:intergenic	35.0%
AAGAAAAAAGGGTTGGATGA+TGG	-	chr5.2:80067751-80067770	None:intergenic	35.0%
AGAAAAAAGGGTTGGATGAT+GGG	-	chr5.2:80067750-80067769	None:intergenic	35.0%
ATCTACACTCATTGAAAGGT+TGG	-	chr5.2:80067284-80067303	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	80066982	80067879	80066982	ID=MS.gene81367
chr5.2	mRNA	80066982	80067879	80066982	ID=MS.gene81367.t1;Parent=MS.gene81367
chr5.2	exon	80066982	80067016	80066982	ID=MS.gene81367.t1.exon1;Parent=MS.gene81367.t1
chr5.2	CDS	80066982	80067016	80066982	ID=cds.MS.gene81367.t1;Parent=MS.gene81367.t1
chr5.2	exon	80067072	80067879	80067072	ID=MS.gene81367.t1.exon2;Parent=MS.gene81367.t1
chr5.2	CDS	80067072	80067879	80067072	ID=cds.MS.gene81367.t1;Parent=MS.gene81367.t1

Gene Sequence

>MS.gene81367

ATGCAATGCTCTGAACTTTGTGTTCAAAGACTCGAGTAAGATCTCACCCTTACATTTCTCATCCACTAATTTTCTGTTTTCGTTCCTCAGCTCGCTTATAATTGCCAAATTCATGTTCACTGTTTCCTTCAATTCGCCATTTTTAAAGCATTTTTTTTATCCTCCAATACGTGCTTTGGCTGGAATTGAGATTAAAACAAAGTTCAGAGCATTGCACCAAAGAGGTGAGATCTTACTCGAGTCTTTGAACACAAAGTTCATAACATTGCATGAAAGAGTTGCAAGGTTGGAGGATGGTTCCAACCTTTCAATGAGTGTAGATGCCTCTGGTGGTGGAAACGATGACGTGGATGGAGAGAATGTTGGTGGCAATGAGGTTGGAAATGACATTGTGGAGAAGTCTACTTCTTTGCAGAGAAACGAAGACGGTCATCACTCTTATGGAGTAGTTGCCGGTACTCAGCCGCTGAACAAAGGGAGCAAAGATGCACCATTAAGAGCATTACTATCATCTAGCCACTTTTCCTTCAACTTCTCCAACTCCAAAACTTTAGATTCTAGCTCACAGTTCTTTGTTTTTAGCACATCAAGTGCATTTCCATCTTCCACCATTTTTTGCTTCAATTTCTCAACCTCACACTCCAACTCACCACTCTTTGTTTTTAGCATATCAAGTGCATTCTCATCTTCCACCCTTTTTTCCTTCAACTCCAAAACTTCATTGTCTAATTCACCATTCTTTTTTCTTAACACATCTAGTTCATTCCCATCATCCAACCCTTTTTTCTTTCAACTTCTTCACCTCGCACTCCAACTCATTATTCTTCTTTGTAAGCTCTCTAATAATTACGTTACCTTCCTCAAACAATTCCCTCAGCTCAATATTCCTCTTTCTTAG

Protein sequence

>MS.gene81367.t1

MQCSELCVQRLDSLIIAKFMFTVSFNSPFLKHFFYPPIRALAGIEIKTKFRALHQRGEILLESLNTKFITLHERVARLEDGSNLSMSVDASGGGNDDVDGENVGGNEVGNDIVEKSTSLQRNEDGHHSYGVVAGTQPLNKGSKDAPLRALLSSSHFSFNFSNSKTLDSSSQFFVFSTSSAFPSSTIFCFNFSTSHSNSPLFVFSISSAFSSSTLFSFNSKTSLSNSPFFFLNTSSSFPSSNPFFFQLLHLALQLIILLCKLSNNYVTFLKQFPQLNIPLS