Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81986.t1 | XP_003602194.1 | 98.5 | 329 | 5 | 0 | 1 | 329 | 1 | 329 | 5.70E-150 | 540.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81986.t1 | Q700C7 | 54.3 | 370 | 122 | 9 | 1 | 329 | 1 | 364 | 4.9e-65 | 249.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81986.t1 | G7J6A1 | 98.5 | 329 | 5 | 0 | 1 | 329 | 1 | 329 | 4.1e-150 | 540.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81986.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050585 | MS.gene81986 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene050587 | MS.gene81986 | 0.82597 | 3.51E-54 | -1.69E-46 |
| MS.gene052142 | MS.gene81986 | 0.831498 | 1.61E-55 | -1.69E-46 |
| MS.gene05456 | MS.gene81986 | 0.808354 | 3.23E-50 | -1.69E-46 |
| MS.gene057881 | MS.gene81986 | 0.832766 | 7.84E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81986.t1 | MTR_3g090850 | 98.480 | 329 | 5 | 0 | 1 | 329 | 1 | 329 | 0.0 | 653 |
| MS.gene81986.t1 | MTR_1g028470 | 61.468 | 327 | 74 | 13 | 5 | 328 | 15 | 292 | 3.15e-108 | 317 |
| MS.gene81986.t1 | MTR_2g022280 | 49.123 | 228 | 73 | 4 | 101 | 328 | 1 | 185 | 1.20e-62 | 197 |
| MS.gene81986.t1 | MTR_0194s0050 | 38.790 | 281 | 127 | 7 | 46 | 326 | 141 | 376 | 2.92e-50 | 172 |
| MS.gene81986.t1 | MTR_3g099620 | 35.341 | 249 | 121 | 7 | 77 | 324 | 96 | 305 | 2.96e-37 | 135 |
| MS.gene81986.t1 | MTR_1g082480 | 36.441 | 236 | 100 | 5 | 99 | 327 | 134 | 326 | 3.12e-36 | 133 |
| MS.gene81986.t1 | MTR_8g066770 | 37.563 | 197 | 82 | 3 | 99 | 295 | 112 | 267 | 7.76e-36 | 132 |
| MS.gene81986.t1 | MTR_7g113830 | 31.208 | 298 | 159 | 7 | 30 | 326 | 49 | 301 | 1.74e-35 | 131 |
| MS.gene81986.t1 | MTR_1g082480 | 36.530 | 219 | 90 | 4 | 99 | 311 | 134 | 309 | 2.96e-33 | 125 |
| MS.gene81986.t1 | MTR_5g064950 | 30.034 | 293 | 157 | 8 | 19 | 309 | 23 | 269 | 2.23e-31 | 120 |
| MS.gene81986.t1 | MTR_5g064950 | 30.034 | 293 | 157 | 8 | 19 | 309 | 23 | 269 | 7.23e-31 | 118 |
| MS.gene81986.t1 | MTR_8g024210 | 75.000 | 48 | 12 | 0 | 99 | 146 | 179 | 226 | 2.22e-19 | 88.2 |
| MS.gene81986.t1 | MTR_8g024210 | 41.758 | 91 | 51 | 2 | 239 | 328 | 269 | 358 | 3.01e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81986.t1 | AT5G53210 | 57.068 | 382 | 93 | 13 | 1 | 329 | 1 | 364 | 1.22e-112 | 331 |
| MS.gene81986.t1 | AT5G53210 | 54.420 | 362 | 94 | 13 | 1 | 309 | 1 | 344 | 3.21e-95 | 286 |
| MS.gene81986.t1 | AT3G06120 | 44.737 | 228 | 90 | 3 | 101 | 328 | 1 | 192 | 5.94e-58 | 186 |
| MS.gene81986.t1 | AT3G24140 | 39.924 | 263 | 113 | 6 | 70 | 328 | 172 | 393 | 1.77e-48 | 168 |
| MS.gene81986.t1 | AT3G24140 | 57.143 | 98 | 36 | 2 | 70 | 167 | 172 | 263 | 7.81e-29 | 115 |
| MS.gene81986.t1 | AT3G24140 | 48.913 | 92 | 46 | 1 | 237 | 328 | 303 | 393 | 8.32e-18 | 84.0 |
| MS.gene81986.t1 | AT4G01460 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.37e-24 | 100 |
| MS.gene81986.t1 | AT4G01460 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.37e-24 | 100 |
| MS.gene81986.t1 | AT5G46690 | 33.051 | 236 | 104 | 6 | 99 | 317 | 86 | 284 | 2.90e-23 | 98.6 |
| MS.gene81986.t1 | AT1G22490 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 3.05e-23 | 98.2 |
| MS.gene81986.t1 | AT1G72210 | 31.304 | 230 | 112 | 6 | 99 | 326 | 123 | 308 | 3.79e-23 | 98.2 |
| MS.gene81986.t1 | AT5G46690 | 34.463 | 177 | 74 | 4 | 99 | 269 | 86 | 226 | 5.55e-23 | 97.1 |
| MS.gene81986.t1 | AT1G22490 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 6.23e-23 | 97.4 |
| MS.gene81986.t1 | AT1G72210 | 66.102 | 59 | 20 | 0 | 99 | 157 | 123 | 181 | 2.85e-22 | 95.5 |
| MS.gene81986.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.37e-21 | 93.2 |
| MS.gene81986.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.83e-21 | 93.2 |
| MS.gene81986.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 3.91e-21 | 92.8 |
| MS.gene81986.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.00e-21 | 93.2 |
| MS.gene81986.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 6.95e-21 | 91.3 |
| MS.gene81986.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 1.15e-20 | 91.3 |
| MS.gene81986.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 179 | 241 | 1.95e-20 | 91.3 |
| MS.gene81986.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 191 | 253 | 2.35e-20 | 90.9 |
| MS.gene81986.t1 | AT5G65320 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 1.64e-16 | 79.0 |
| MS.gene81986.t1 | AT5G65320 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 2.34e-16 | 78.6 |
Find 50 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGACAGAACAGAATT+TGG | 0.163384 | 3.2:+76693376 | MS.gene81986:CDS |
| TGATGATCTCTTTGCCATTT+TGG | 0.180476 | 3.2:+76693405 | MS.gene81986:CDS |
| ATGTAGCTTTGTTGCATTCT+TGG | 0.204975 | 3.2:-76695578 | None:intergenic |
| CTAGTTGGTTGTGGAGTTCT+TGG | 0.246531 | 3.2:-76695545 | None:intergenic |
| TGTGGAGTTCTTGGACTAAT+TGG | 0.288248 | 3.2:-76695536 | None:intergenic |
| TTCTTTGTTTCTTAGCTTCA+AGG | 0.307021 | 3.2:-76695415 | None:intergenic |
| GAAGTGACCTCATTCTCTTT+TGG | 0.319139 | 3.2:-76693484 | None:intergenic |
| GGAGATCAAGCATCAATAAT+TGG | 0.321601 | 3.2:+76695347 | MS.gene81986:CDS |
| GTTTCTTAGCTTCAAGGGCT+TGG | 0.330395 | 3.2:-76695409 | None:intergenic |
| TGTTGCATTCTTGGCTTGTA+AGG | 0.333897 | 3.2:-76695569 | None:intergenic |
| CTTGGACTTGGAACTAATCT+TGG | 0.340912 | 3.2:-76695461 | None:intergenic |
| AACTTGAAACTGAACCTAAA+AGG | 0.343348 | 3.2:+76693563 | MS.gene81986:CDS |
| AAGTTTAGTCTTGGACTTAG+AGG | 0.354427 | 3.2:-76695512 | None:intergenic |
| ATCTTCTAGACTCTCCAAAA+TGG | 0.357616 | 3.2:-76693419 | None:intergenic |
| GGACTTAGTGGTGAAGGTCT+TGG | 0.391894 | 3.2:-76695479 | None:intergenic |
| ACTGTTTCTCAACGAATTCC+AGG | 0.392508 | 3.2:+76695743 | MS.gene81986:CDS |
| CTTGGCTTGTAAGGACTAGT+TGG | 0.398269 | 3.2:-76695560 | None:intergenic |
| CTAATTGGCAAGTTTAGTCT+TGG | 0.398977 | 3.2:-76695521 | None:intergenic |
| TCATATAAGCTTTCTTCCAT+TGG | 0.406925 | 3.2:-76693349 | None:intergenic |
| TTGACCTCCACGTCAGCAAT+AGG | 0.436432 | 3.2:-76695692 | None:intergenic |
| ATCTGTTCCTCAAGCAAAGT+TGG | 0.461398 | 3.2:-76693604 | None:intergenic |
| TCTTTGTTTCTTAGCTTCAA+GGG | 0.473972 | 3.2:-76695414 | None:intergenic |
| TTTCTTGGACTTAGTGGTGA+AGG | 0.477916 | 3.2:-76695485 | None:intergenic |
| GAGGAAGTAGAGGAACTAGT+AGG | 0.492572 | 3.2:-76695626 | None:intergenic |
| CAGTGCTGATGGACAACAAA+GGG | 0.493882 | 3.2:+76693630 | MS.gene81986:CDS |
| GTAGAGGAACTAGTAGGAGA+TGG | 0.502378 | 3.2:-76695620 | None:intergenic |
| ATAATCTTCAAAGCTTGTCC+TGG | 0.509002 | 3.2:-76695761 | None:intergenic |
| GGTCACTTCGACATCGAGAT+TGG | 0.509922 | 3.2:+76693498 | MS.gene81986:CDS |
| AGTGGTGAAGGTCTTGGACT+TGG | 0.521437 | 3.2:-76695473 | None:intergenic |
| CAAGTTCTTCAGCACTCAGT+TGG | 0.524170 | 3.2:-76696317 | None:intergenic |
| TTGTAAGGACTAGTTGGTTG+TGG | 0.524571 | 3.2:-76695554 | None:intergenic |
| TACTACTCCAAAAGAGAATG+AGG | 0.530957 | 3.2:+76693477 | MS.gene81986:CDS |
| GTTGAACTCCTTCACTATCA+AGG | 0.535634 | 3.2:+76695853 | MS.gene81986:CDS |
| CTAGTAGGAGATGGATCAAG+AGG | 0.552519 | 3.2:-76695611 | None:intergenic |
| GAACAGATTAACAGTGCTGA+TGG | 0.553866 | 3.2:+76693619 | MS.gene81986:CDS |
| CTCAGAATCTTGCAGCGAAG+AGG | 0.567938 | 3.2:-76693536 | None:intergenic |
| GCTTACACCAACTTTGCTTG+AGG | 0.578198 | 3.2:+76693597 | MS.gene81986:CDS |
| TTTAGTCTTGGACTTAGAGG+TGG | 0.583231 | 3.2:-76695509 | None:intergenic |
| ATCATTGACTGAGGAAGTAG+AGG | 0.588412 | 3.2:-76695636 | None:intergenic |
| GTCTCCTATTGCTGACGTGG+AGG | 0.609724 | 3.2:+76695688 | MS.gene81986:CDS |
| TTACTGTGGAGCGCAACAGA+AGG | 0.616988 | 3.2:+76693662 | MS.gene81986:CDS |
| GCTTCAACTTGATTGATGAG+AGG | 0.624063 | 3.2:-76693454 | None:intergenic |
| AAAGTCTCCTATTGCTGACG+TGG | 0.628049 | 3.2:+76695685 | MS.gene81986:CDS |
| AAGTACTATTAATGTTAACA+TGG | 0.635453 | 3.2:-76695817 | None:intergenic |
| TAAACGTACCTTGATAGTGA+AGG | 0.635932 | 3.2:-76695861 | None:intergenic |
| ATTGATGTTATCATTGACTG+AGG | 0.636012 | 3.2:-76695645 | None:intergenic |
| GATCAAGCATCAATAATTGG+AGG | 0.643294 | 3.2:+76695350 | MS.gene81986:CDS |
| GATAGTGAAGGAGTTCAACA+TGG | 0.664739 | 3.2:-76695849 | None:intergenic |
| AAGGGTTTCTCATATTACTG+TGG | 0.670712 | 3.2:+76693648 | MS.gene81986:CDS |
| ACAGTGCTGATGGACAACAA+AGG | 0.726440 | 3.2:+76693629 | MS.gene81986:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAAGTATATAAATAAA+GGG | + | chr3.2:76694718-76694737 | MS.gene81986:intron | 10.0% |
| !!! | ATTTTAAATAAAATAGCATT+TGG | + | chr3.2:76693888-76693907 | MS.gene81986:intron | 10.0% |
| !!! | TAAGAAAAGTATATAAATAA+AGG | + | chr3.2:76694717-76694736 | MS.gene81986:intron | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr3.2:76694414-76694433 | MS.gene81986:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3.2:76694433-76694414 | None:intergenic | 15.0% |
| !! | AATCTTAGAAAAAAAATGAT+GGG | - | chr3.2:76694489-76694508 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr3.2:76694415-76694434 | MS.gene81986:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3.2:76694434-76694415 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3.2:76694223-76694242 | MS.gene81986:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr3.2:76694783-76694802 | MS.gene81986:intron | 15.0% |
| !! | TAATCTTAGAAAAAAAATGA+TGG | - | chr3.2:76694490-76694509 | None:intergenic | 15.0% |
| !! | TAATGCAACTAATTTAATTA+GGG | + | chr3.2:76695326-76695345 | MS.gene81986:intron | 15.0% |
| !! | TATATATGTCAAAAAGTAAA+TGG | + | chr3.2:76696043-76696062 | MS.gene81986:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr3.2:76694782-76694801 | MS.gene81986:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3.2:76694342-76694323 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr3.2:76694258-76694277 | MS.gene81986:intron | 15.0% |
| !!! | AGAAAAGTATATAAATAAAG+GGG | + | chr3.2:76694719-76694738 | MS.gene81986:intron | 15.0% |
| !!! | GACACTTTTTTTAAAAAAAT+GGG | + | chr3.2:76694852-76694871 | MS.gene81986:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3.2:76694353-76694372 | MS.gene81986:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3.2:76694742-76694761 | MS.gene81986:intron | 20.0% |
| !! | AAGTACTATTAATGTTAACA+TGG | - | chr3.2:76695820-76695839 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3.2:76694815-76694834 | MS.gene81986:intron | 20.0% |
| !! | ATTAAATTAGTTGCATTAGA+TGG | - | chr3.2:76695324-76695343 | None:intergenic | 20.0% |
| !! | CCAGTAATATATTATAAGAA+TGG | + | chr3.2:76696240-76696259 | MS.gene81986:intron | 20.0% |
| !! | CCATTCTTATAATATATTAC+TGG | - | chr3.2:76696243-76696262 | None:intergenic | 20.0% |
| !! | CTAATGCAACTAATTTAATT+AGG | + | chr3.2:76695325-76695344 | MS.gene81986:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr3.2:76694816-76694835 | MS.gene81986:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3.2:76694352-76694371 | MS.gene81986:intron | 20.0% |
| !! | TTAAATTAGTTGCATTAGAT+GGG | - | chr3.2:76695323-76695342 | None:intergenic | 20.0% |
| !!! | AAACACGTTAAAATCATTTT+TGG | + | chr3.2:76693926-76693945 | MS.gene81986:intron | 20.0% |
| !!! | AACACGTTAAAATCATTTTT+GGG | + | chr3.2:76693927-76693946 | MS.gene81986:intron | 20.0% |
| !!! | ATGGTTTGTAATTAATACTA+TGG | + | chr3.2:76696259-76696278 | MS.gene81986:intron | 20.0% |
| !!! | GGACACTTTTTTTAAAAAAA+TGG | + | chr3.2:76694851-76694870 | MS.gene81986:intron | 20.0% |
| !!! | TAAGTGTATATTTGTTTCTA+TGG | + | chr3.2:76693749-76693768 | MS.gene81986:intron | 20.0% |
| !!! | TATACTTGATTTTATTGTGA+TGG | - | chr3.2:76695957-76695976 | None:intergenic | 20.0% |
| ! | ATTTAAGCACAATGAAAACA+TGG | - | chr3.2:76694549-76694568 | None:intergenic | 25.0% |
| ! | CTATTGAAGAGTAAAAAGAA+AGG | - | chr3.2:76695921-76695940 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3.2:76694741-76694760 | MS.gene81986:intron | 25.0% |
| ! | TAAATTAGTTGCATTAGATG+GGG | - | chr3.2:76695322-76695341 | None:intergenic | 25.0% |
| ! | TAACAAGTCAATTACTTACT+GGG | + | chr3.2:76694569-76694588 | MS.gene81986:intron | 25.0% |
| ! | TATATAAATAAAGGGGAAAG+TGG | + | chr3.2:76694726-76694745 | MS.gene81986:intron | 25.0% |
| ! | TTAACAAGTCAATTACTTAC+TGG | + | chr3.2:76694568-76694587 | MS.gene81986:intron | 25.0% |
| !! | CTTTCTTTTTACTCTTCAAT+AGG | + | chr3.2:76695919-76695938 | MS.gene81986:intron | 25.0% |
| !! | TTGATGTACTTTAAAAGTAG+TGG | + | chr3.2:76696067-76696086 | MS.gene81986:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3.2:76694063-76694082 | None:intergenic | 25.0% |
| !!! | ATTTGATTACTTTTTGTGCA+CGG | + | chr3.2:76695111-76695130 | MS.gene81986:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3.2:76694064-76694083 | None:intergenic | 25.0% |
| AAAAAATGGGTCAGTTATTC+CGG | + | chr3.2:76694865-76694884 | MS.gene81986:intron | 30.0% | |
| AACAAGTCAATTACTTACTG+GGG | + | chr3.2:76694570-76694589 | MS.gene81986:intron | 30.0% | |
| AACTTGAAACTGAACCTAAA+AGG | + | chr3.2:76693563-76693582 | MS.gene81986:CDS | 30.0% | |
| ACAGCAACAAATTATAATGG+AGG | - | chr3.2:76694918-76694937 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr3.2:76694126-76694145 | MS.gene81986:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr3.2:76694385-76694404 | MS.gene81986:intron | 30.0% | |
| GCTACTTATGTGTTCAATTT+AGG | + | chr3.2:76696216-76696235 | MS.gene81986:intron | 30.0% | |
| TAAACTTGCACATCTAAGTA+TGG | - | chr3.2:76694642-76694661 | None:intergenic | 30.0% | |
| TACTTAGATGTGCAAGTTTA+AGG | + | chr3.2:76694642-76694661 | MS.gene81986:intron | 30.0% | |
| TATCAAGGTACGTTTATTCT+TGG | + | chr3.2:76695868-76695887 | MS.gene81986:intron | 30.0% | |
| TGAGTGATTATGAAGGTTTA+TGG | + | chr3.2:76694597-76694616 | MS.gene81986:intron | 30.0% | |
| TTTGAAGACAGAACAGAATT+TGG | + | chr3.2:76693376-76693395 | MS.gene81986:CDS | 30.0% | |
| ! | ACAGTTTTCAAAAGAACATG+AGG | - | chr3.2:76695728-76695747 | None:intergenic | 30.0% |
| ! | ATGTTAAAGATCACGTTTTG+AGG | + | chr3.2:76693833-76693852 | MS.gene81986:intron | 30.0% |
| ! | ATTGATGTTATCATTGACTG+AGG | - | chr3.2:76695648-76695667 | None:intergenic | 30.0% |
| ! | TCTTTGTTTCTTAGCTTCAA+GGG | - | chr3.2:76695417-76695436 | None:intergenic | 30.0% |
| ! | TTCTTTGTTTCTTAGCTTCA+AGG | - | chr3.2:76695418-76695437 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr3.2:76694829-76694848 | MS.gene81986:intron | 30.0% |
| !! | CATTATAATTTGTTGCTGTG+GGG | + | chr3.2:76694919-76694938 | MS.gene81986:intron | 30.0% |
| !! | CCATTATAATTTGTTGCTGT+GGG | + | chr3.2:76694918-76694937 | MS.gene81986:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3.2:76694446-76694465 | MS.gene81986:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3.2:76694465-76694446 | None:intergenic | 30.0% |
| !! | TCCATTATAATTTGTTGCTG+TGG | + | chr3.2:76694917-76694936 | MS.gene81986:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr3.2:76694830-76694849 | MS.gene81986:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3.2:76694445-76694464 | MS.gene81986:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3.2:76694464-76694445 | None:intergenic | 30.0% |
| AAGGGTTTCTCATATTACTG+TGG | + | chr3.2:76693648-76693667 | MS.gene81986:CDS | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr3.2:76694430-76694449 | MS.gene81986:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3.2:76694449-76694430 | None:intergenic | 35.0% | |
| ATAATCTTCAAAGCTTGTCC+TGG | - | chr3.2:76695764-76695783 | None:intergenic | 35.0% | |
| ATCTTCTAGACTCTCCAAAA+TGG | - | chr3.2:76693422-76693441 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr3.2:76694682-76694701 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr3.2:76694683-76694702 | None:intergenic | 35.0% | |
| CCCACAGCAACAAATTATAA+TGG | - | chr3.2:76694921-76694940 | None:intergenic | 35.0% | |
| CTAATTGGCAAGTTTAGTCT+TGG | - | chr3.2:76695524-76695543 | None:intergenic | 35.0% | |
| GATCAAGCATCAATAATTGG+AGG | + | chr3.2:76695350-76695369 | MS.gene81986:CDS | 35.0% | |
| GGAGATCAAGCATCAATAAT+TGG | + | chr3.2:76695347-76695366 | MS.gene81986:CDS | 35.0% | |
| GTAGTTATGCAATCAATGCA+TGG | + | chr3.2:76695164-76695183 | MS.gene81986:intron | 35.0% | |
| TACTACTCCAAAAGAGAATG+AGG | + | chr3.2:76693477-76693496 | MS.gene81986:CDS | 35.0% | |
| TCACAGTAAAAAACTGCACT+AGG | - | chr3.2:76696012-76696031 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr3.2:76694696-76694715 | None:intergenic | 35.0% | |
| TGAGGACAAATGTCTGAATA+AGG | - | chr3.2:76696152-76696171 | None:intergenic | 35.0% | |
| ! | ACCCTTTTGACATAAAAGCA+AGG | - | chr3.2:76693730-76693749 | None:intergenic | 35.0% |
| ! | ATACGTCTTTTCAGCAAATG+AGG | - | chr3.2:76696170-76696189 | None:intergenic | 35.0% |
| ! | ATGAGCACTTGTCTGTTTTA+AGG | + | chr3.2:76693695-76693714 | MS.gene81986:CDS | 35.0% |
| !! | AAGTTTAGTCTTGGACTTAG+AGG | - | chr3.2:76695515-76695534 | None:intergenic | 35.0% |
| !! | ATGTAGCTTTGTTGCATTCT+TGG | - | chr3.2:76695581-76695600 | None:intergenic | 35.0% |
| !! | GCATTGATTGCATAACTACA+AGG | - | chr3.2:76695163-76695182 | None:intergenic | 35.0% |
| !! | GCCTTGCTTTTATGTCAAAA+GGG | + | chr3.2:76693726-76693745 | MS.gene81986:CDS | 35.0% |
| !! | TAAACGTACCTTGATAGTGA+AGG | - | chr3.2:76695864-76695883 | None:intergenic | 35.0% |
| !! | TGATGATCTCTTTGCCATTT+TGG | + | chr3.2:76693405-76693424 | MS.gene81986:CDS | 35.0% |
| !! | TGCCTTGCTTTTATGTCAAA+AGG | + | chr3.2:76693725-76693744 | MS.gene81986:CDS | 35.0% |
| ATATTTCACTGCACCTCTCT+GGG | + | chr3.2:76696096-76696115 | MS.gene81986:intron | 40.0% | |
| ATCTGTTCCTCAAGCAAAGT+TGG | - | chr3.2:76693607-76693626 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr3.2:76694680-76694699 | MS.gene81986:intron | 40.0% | |
| CTTGGACTTGGAACTAATCT+TGG | - | chr3.2:76695464-76695483 | None:intergenic | 40.0% | |
| GATAGTGAAGGAGTTCAACA+TGG | - | chr3.2:76695852-76695871 | None:intergenic | 40.0% | |
| GATGCATGTTACATGTACCT+TGG | - | chr3.2:76696125-76696144 | None:intergenic | 40.0% | |
| GCTTCAACTTGATTGATGAG+AGG | - | chr3.2:76693457-76693476 | None:intergenic | 40.0% | |
| GGGTCAATGAGTGATTATGA+AGG | + | chr3.2:76694590-76694609 | MS.gene81986:intron | 40.0% | |
| GTTGAACTCCTTCACTATCA+AGG | + | chr3.2:76695853-76695872 | MS.gene81986:CDS | 40.0% | |
| TATATTTCACTGCACCTCTC+TGG | + | chr3.2:76696095-76696114 | MS.gene81986:intron | 40.0% | |
| TGCAATCAATGCATGGAAGA+TGG | + | chr3.2:76695171-76695190 | MS.gene81986:intron | 40.0% | |
| TGCACATCTAAGTATGGTAG+AGG | - | chr3.2:76694636-76694655 | None:intergenic | 40.0% | |
| TGTGGAGTTCTTGGACTAAT+TGG | - | chr3.2:76695539-76695558 | None:intergenic | 40.0% | |
| TTCCCCGAGAATAGAAAATC+CGG | - | chr3.2:76695139-76695158 | None:intergenic | 40.0% | |
| TTTCTTGGACTTAGTGGTGA+AGG | - | chr3.2:76695488-76695507 | None:intergenic | 40.0% | |
| ! | ACTGTTTCTCAACGAATTCC+AGG | + | chr3.2:76695743-76695762 | MS.gene81986:CDS | 40.0% |
| ! | AGCTTCTGTCTCTTCCTTTT+AGG | - | chr3.2:76693580-76693599 | None:intergenic | 40.0% |
| ! | ATCATTGACTGAGGAAGTAG+AGG | - | chr3.2:76695639-76695658 | None:intergenic | 40.0% |
| ! | GAACAGATTAACAGTGCTGA+TGG | + | chr3.2:76693619-76693638 | MS.gene81986:CDS | 40.0% |
| ! | GAAGTGACCTCATTCTCTTT+TGG | - | chr3.2:76693487-76693506 | None:intergenic | 40.0% |
| !! | CGGAGAGAGTATCAAAGATA+TGG | + | chr3.2:76694890-76694909 | MS.gene81986:intron | 40.0% |
| !! | TGTTGCATTCTTGGCTTGTA+AGG | - | chr3.2:76695572-76695591 | None:intergenic | 40.0% |
| !! | TTGTAAGGACTAGTTGGTTG+TGG | - | chr3.2:76695557-76695576 | None:intergenic | 40.0% |
| !! | TTTAGTCTTGGACTTAGAGG+TGG | - | chr3.2:76695512-76695531 | None:intergenic | 40.0% |
| AAAAAGAGCTGCGTGAATGC+AGG | - | chr3.2:76694945-76694964 | None:intergenic | 45.0% | |
| AAAGTCTCCTATTGCTGACG+TGG | + | chr3.2:76695685-76695704 | MS.gene81986:CDS | 45.0% | |
| ATGGGTCAGTTATTCCGGAA+CGG | + | chr3.2:76694870-76694889 | MS.gene81986:intron | 45.0% | |
| ATGGTAGAGGTCACTTGTCT+AGG | - | chr3.2:76694623-76694642 | None:intergenic | 45.0% | |
| CAAGTTCTTCAGCACTCAGT+TGG | - | chr3.2:76696320-76696339 | None:intergenic | 45.0% | |
| CTAGTAGGAGATGGATCAAG+AGG | - | chr3.2:76695614-76695633 | None:intergenic | 45.0% | |
| CTAGTTGGTTGTGGAGTTCT+TGG | - | chr3.2:76695548-76695567 | None:intergenic | 45.0% | |
| CTTTGATACTCTCTCCGTTC+CGG | - | chr3.2:76694887-76694906 | None:intergenic | 45.0% | |
| GAGGAAGTAGAGGAACTAGT+AGG | - | chr3.2:76695629-76695648 | None:intergenic | 45.0% | |
| GATGGGGTGCATAAAGGAAA+TGG | - | chr3.2:76695306-76695325 | None:intergenic | 45.0% | |
| GCATTAGATGGGGTGCATAA+AGG | - | chr3.2:76695312-76695331 | None:intergenic | 45.0% | |
| GCTTACACCAACTTTGCTTG+AGG | + | chr3.2:76693597-76693616 | MS.gene81986:CDS | 45.0% | |
| GTAGAGGAACTAGTAGGAGA+TGG | - | chr3.2:76695623-76695642 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr3.2:76694678-76694697 | None:intergenic | 45.0% | |
| GTTTCTTAGCTTCAAGGGCT+TGG | - | chr3.2:76695412-76695431 | None:intergenic | 45.0% | |
| TATTTCACTGCACCTCTCTG+GGG | + | chr3.2:76696097-76696116 | MS.gene81986:intron | 45.0% | |
| TCCCCGAGAATAGAAAATCC+GGG | - | chr3.2:76695138-76695157 | None:intergenic | 45.0% | |
| ! | ACCCGGATTTTCTATTCTCG+GGG | + | chr3.2:76695134-76695153 | MS.gene81986:intron | 45.0% |
| ! | GACCCGGATTTTCTATTCTC+GGG | + | chr3.2:76695133-76695152 | MS.gene81986:intron | 45.0% |
| ! | GGACCCGGATTTTCTATTCT+CGG | + | chr3.2:76695132-76695151 | MS.gene81986:intron | 45.0% |
| ! | GGACTTAGAGGTGGTTTTCT+TGG | - | chr3.2:76695503-76695522 | None:intergenic | 45.0% |
| ! | GGTGGTTTTCTTGGACTTAG+TGG | - | chr3.2:76695494-76695513 | None:intergenic | 45.0% |
| !! | ACAGTGCTGATGGACAACAA+AGG | + | chr3.2:76693629-76693648 | MS.gene81986:CDS | 45.0% |
| !! | CAGTGCTGATGGACAACAAA+GGG | + | chr3.2:76693630-76693649 | MS.gene81986:CDS | 45.0% |
| !! | CTTGGCTTGTAAGGACTAGT+TGG | - | chr3.2:76695563-76695582 | None:intergenic | 45.0% |
| !!! | TTACTTTTTGTGCACGGACC+CGG | + | chr3.2:76695117-76695136 | MS.gene81986:intron | 45.0% |
| !! | ATTAATTTATTTATATAGAT+TGG | + | chr3.2:76696285-76696304 | MS.gene81986:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3.2:76694031-76694050 | None:intergenic | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3.2:76694030-76694049 | None:intergenic | 5.0% |
| AGTGGTGAAGGTCTTGGACT+TGG | - | chr3.2:76695476-76695495 | None:intergenic | 50.0% | |
| CTCAGAATCTTGCAGCGAAG+AGG | - | chr3.2:76693539-76693558 | None:intergenic | 50.0% | |
| GGACTTAGTGGTGAAGGTCT+TGG | - | chr3.2:76695482-76695501 | None:intergenic | 50.0% | |
| GGTCACTTCGACATCGAGAT+TGG | + | chr3.2:76693498-76693517 | MS.gene81986:CDS | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | - | chr3.2:76694674-76694693 | None:intergenic | 50.0% | |
| TTACTGTGGAGCGCAACAGA+AGG | + | chr3.2:76693662-76693681 | MS.gene81986:CDS | 50.0% | |
| TTGACCTCCACGTCAGCAAT+AGG | - | chr3.2:76695695-76695714 | None:intergenic | 50.0% | |
| ! | GACGTGGAGGTCAAGTTTTC+AGG | + | chr3.2:76695701-76695720 | MS.gene81986:CDS | 50.0% |
| AAGGTATACTCCCTCCGTCC+CGG | + | chr3.2:76694661-76694680 | MS.gene81986:intron | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr3.2:76694675-76694694 | None:intergenic | 55.0% | |
| GTCTCCTATTGCTGACGTGG+AGG | + | chr3.2:76695688-76695707 | MS.gene81986:CDS | 55.0% | |
| TGTACCTTGGCACCCCAGAG+AGG | - | chr3.2:76696112-76696131 | None:intergenic | 60.0% | |
| !! | TGCACCTCTCTGGGGTGCCA+AGG | + | chr3.2:76696105-76696124 | MS.gene81986:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76693352 | 76696368 | 76693352 | ID=MS.gene81986 |
| chr3.2 | mRNA | 76693352 | 76696368 | 76693352 | ID=MS.gene81986.t1;Parent=MS.gene81986 |
| chr3.2 | exon | 76693352 | 76693747 | 76693352 | ID=MS.gene81986.t1.exon1;Parent=MS.gene81986.t1 |
| chr3.2 | CDS | 76693352 | 76693747 | 76693352 | ID=cds.MS.gene81986.t1;Parent=MS.gene81986.t1 |
| chr3.2 | exon | 76695347 | 76695874 | 76695347 | ID=MS.gene81986.t1.exon2;Parent=MS.gene81986.t1 |
| chr3.2 | CDS | 76695347 | 76695874 | 76695347 | ID=cds.MS.gene81986.t1;Parent=MS.gene81986.t1 |
| chr3.2 | exon | 76696303 | 76696368 | 76696303 | ID=MS.gene81986.t1.exon3;Parent=MS.gene81986.t1 |
| chr3.2 | CDS | 76696303 | 76696368 | 76696303 | ID=cds.MS.gene81986.t1;Parent=MS.gene81986.t1 |
| Gene Sequence |
| Protein sequence |
