Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82023.t1 | XP_013444570.1 | 97.2 | 213 | 6 | 0 | 1 | 213 | 1 | 213 | 4.90E-78 | 300.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82023.t1 | Q93VH6 | 58.1 | 167 | 51 | 5 | 1 | 153 | 1 | 162 | 5.2e-36 | 152.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82023.t1 | A0A072TYG4 | 97.2 | 213 | 6 | 0 | 1 | 213 | 1 | 213 | 3.6e-78 | 300.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene82023 | MS.gene04991 | PPI |
MS.gene008298 | MS.gene82023 | PPI |
MS.gene82023 | MS.gene53859 | PPI |
MS.gene53861 | MS.gene82023 | PPI |
MS.gene048687 | MS.gene82023 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82023.t1 | MTR_8g024650 | 98.592 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 1.07e-148 | 412 |
MS.gene82023.t1 | MTR_1g080590 | 57.778 | 90 | 37 | 1 | 2 | 91 | 3 | 91 | 6.57e-27 | 102 |
MS.gene82023.t1 | MTR_7g115410 | 58.209 | 67 | 28 | 0 | 18 | 84 | 8 | 74 | 8.23e-19 | 81.6 |
MS.gene82023.t1 | MTR_3g092260 | 52.308 | 65 | 31 | 0 | 10 | 74 | 1 | 65 | 2.65e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82023.t1 | AT4G00850 | 59.130 | 230 | 70 | 8 | 1 | 213 | 1 | 223 | 8.66e-67 | 205 |
MS.gene82023.t1 | AT4G00850 | 61.170 | 188 | 46 | 7 | 1 | 168 | 1 | 181 | 1.92e-54 | 173 |
MS.gene82023.t1 | AT1G01160 | 59.391 | 197 | 58 | 9 | 2 | 183 | 4 | 193 | 1.00e-46 | 153 |
MS.gene82023.t1 | AT1G01160 | 50.649 | 231 | 58 | 10 | 2 | 183 | 4 | 227 | 5.99e-40 | 137 |
MS.gene82023.t1 | AT5G28640 | 58.750 | 80 | 32 | 1 | 2 | 81 | 3 | 81 | 7.20e-24 | 94.7 |
Find 61 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACCACCACGCCCGTCATT+TGG | 0.299029 | 8.2:+71241348 | None:intergenic |
GAAGCTGATCCTGGCAATAT+TGG | 0.324263 | 8.2:-71242341 | MS.gene82023:CDS |
TGGTTATGTTTGTTTGTTGT+GGG | 0.373642 | 8.2:+71244647 | None:intergenic |
CTTGTTGCATCGCAGGGTGC+GGG | 0.395604 | 8.2:+71241613 | None:intergenic |
GCAAGCTATGCAAGGTCAAA+TGG | 0.409839 | 8.2:-71241451 | MS.gene82023:CDS |
CATGCCGTTGTTTATCCCTC+CGG | 0.429178 | 8.2:+71241419 | None:intergenic |
ATATTGGACAATCAAAATCT+TGG | 0.433986 | 8.2:-71242325 | MS.gene82023:CDS |
CAGCAGCGGAAGACGTTCCT+TGG | 0.436173 | 8.2:+71241280 | None:intergenic |
GCTGGCACAGCCGGTGGAGA+TGG | 0.437307 | 8.2:-71241303 | MS.gene82023:CDS |
CCTTGTTGCATCGCAGGGTG+CGG | 0.438789 | 8.2:+71241612 | None:intergenic |
GCATCGGAAGCTGGCACAGC+CGG | 0.440907 | 8.2:-71241312 | MS.gene82023:CDS |
GGAGGCAAGGCCGGTGTTTG+TGG | 0.444812 | 8.2:+71241736 | None:intergenic |
CCAAATGACGGGCGTGGTGG+TGG | 0.447807 | 8.2:-71241348 | MS.gene82023:CDS |
AGAGCAGCCTCGCTGTGCAT+TGG | 0.451605 | 8.2:+71241393 | None:intergenic |
TAGAATCCTTGTTGCATCGC+AGG | 0.458140 | 8.2:+71241606 | None:intergenic |
ATTCTATATGCAACATCCTC+AGG | 0.459589 | 8.2:-71241589 | MS.gene82023:CDS |
TGTGGGAATGAAGGCATCAT+AGG | 0.467268 | 8.2:+71244664 | None:intergenic |
GTGGTTATGTTTGTTTGTTG+TGG | 0.473393 | 8.2:+71244646 | None:intergenic |
ATGCCGTTGTTTATCCCTCC+GGG | 0.482314 | 8.2:+71241420 | None:intergenic |
AAGCAAGATGCATCGGAAGC+TGG | 0.485531 | 8.2:-71241321 | MS.gene82023:CDS |
ATGCACAGCGAGGCTGCTCT+CGG | 0.485660 | 8.2:-71241390 | MS.gene82023:CDS |
TTTGATTGTCCAATATTGCC+AGG | 0.486087 | 8.2:+71242332 | None:intergenic |
GCTCTCGGAGGTAGCGGCAG+TGG | 0.489976 | 8.2:-71241375 | MS.gene82023:CDS |
TTTGTTTGTTGTGGGAATGA+AGG | 0.492115 | 8.2:+71244655 | None:intergenic |
TGAGAACAAGAAGCTGATCC+TGG | 0.492616 | 8.2:-71242350 | MS.gene82023:CDS |
TTTACCTGTGGAGGCAAGGC+CGG | 0.494062 | 8.2:+71241727 | None:intergenic |
AATTCTTCTGAAGCTGAGCT+TGG | 0.501703 | 8.2:+71241791 | None:intergenic |
CAAGCTATGCAAGGTCAAAT+GGG | 0.502556 | 8.2:-71241450 | MS.gene82023:CDS |
TGAGCCATTGCTGCAGCCTG+AGG | 0.505768 | 8.2:+71241573 | None:intergenic |
GCAGTGGCGGTCCAAATGAC+GGG | 0.509348 | 8.2:-71241359 | MS.gene82023:CDS |
ACATCCTCAGGCTGCAGCAA+TGG | 0.512641 | 8.2:-71241577 | MS.gene82023:CDS |
CGTTCCTTGGCCATCTCCAC+CGG | 0.512780 | 8.2:+71241293 | None:intergenic |
GGCAGTGGCGGTCCAAATGA+CGG | 0.520720 | 8.2:-71241360 | MS.gene82023:CDS |
AGTGGAGATGCTTCAGAAGA+GGG | 0.524475 | 8.2:-71241249 | MS.gene82023:CDS |
GGCGGTCCAAATGACGGGCG+TGG | 0.548495 | 8.2:-71241354 | MS.gene82023:CDS |
CTCGGAGGTAGCGGCAGTGG+CGG | 0.555733 | 8.2:-71241372 | MS.gene82023:CDS |
TGGTAATCCGCATCAAATGC+AGG | 0.555892 | 8.2:-71241511 | MS.gene82023:CDS |
TCGGAAGCTGGCACAGCCGG+TGG | 0.556771 | 8.2:-71241309 | MS.gene82023:CDS |
GAGGCTGCTCTCGGAGGTAG+CGG | 0.567702 | 8.2:-71241381 | MS.gene82023:CDS |
TTGTTGCATCGCAGGGTGCG+GGG | 0.574679 | 8.2:+71241614 | None:intergenic |
TGCGGATTACCAAACTGCAT+TGG | 0.577266 | 8.2:+71241522 | None:intergenic |
TGCTGATCCTGCATTTGATG+CGG | 0.578340 | 8.2:+71241504 | None:intergenic |
CCGCACCCTGCGATGCAACA+AGG | 0.581072 | 8.2:-71241612 | MS.gene82023:CDS |
AGAATCCTTGTTGCATCGCA+GGG | 0.581843 | 8.2:+71241607 | None:intergenic |
AACACCGGCCTTGCCTCCAC+AGG | 0.583006 | 8.2:-71241731 | MS.gene82023:intron |
CAGTGGAGATGCTTCAGAAG+AGG | 0.596581 | 8.2:-71241250 | MS.gene82023:CDS |
TGACGCGCAGCCACAAACAC+CGG | 0.601230 | 8.2:-71241746 | MS.gene82023:CDS |
TCCACTGTTATGCGCAGCAG+CGG | 0.603263 | 8.2:+71241266 | None:intergenic |
GGCATCATAGGAATCATTTG+CGG | 0.604370 | 8.2:+71244676 | None:intergenic |
GGTCCAAATGACGGGCGTGG+TGG | 0.608755 | 8.2:-71241351 | MS.gene82023:CDS |
TCCGCTGCTGCGCATAACAG+TGG | 0.611078 | 8.2:-71241267 | MS.gene82023:CDS |
TGGAAGCAAGCAAGATGCAT+CGG | 0.613038 | 8.2:-71241328 | MS.gene82023:CDS |
ACAGCCGGTGGAGATGGCCA+AGG | 0.619873 | 8.2:-71241297 | MS.gene82023:CDS |
CTACATCAGCAAGCTATGCA+AGG | 0.622999 | 8.2:-71241459 | MS.gene82023:CDS |
GCAGCAATGGCTCAGCAACA+AGG | 0.635958 | 8.2:-71241564 | MS.gene82023:CDS |
GGTCAAATGGGACTTAGACC+CGG | 0.641612 | 8.2:-71241438 | MS.gene82023:CDS |
CACAGCGAGGCTGCTCTCGG+AGG | 0.652776 | 8.2:-71241387 | MS.gene82023:CDS |
CATGCATCCAATGCACAGCG+AGG | 0.659942 | 8.2:-71241400 | MS.gene82023:CDS |
AAATGGGACTTAGACCCGGA+GGG | 0.675424 | 8.2:-71241434 | MS.gene82023:CDS |
CAAATGGGACTTAGACCCGG+AGG | 0.712224 | 8.2:-71241435 | MS.gene82023:CDS |
AGACCCGGAGGGATAAACAA+CGG | 0.721572 | 8.2:-71241423 | MS.gene82023:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAATATTATGAAATAG+CGG | - | chr8.2:71243777-71243796 | MS.gene82023:intron | 10.0% |
!!! | AATATAACTTTTTAATCTAT+AGG | - | chr8.2:71244019-71244038 | MS.gene82023:intron | 10.0% |
!! | ATATAATATGTAATTTACGA+TGG | - | chr8.2:71243966-71243985 | MS.gene82023:intron | 15.0% |
!! | TTATGTATTAGGAAATTTAT+AGG | - | chr8.2:71243454-71243473 | MS.gene82023:intron | 15.0% |
!!! | TTTTAGTTCAAGTTTTTTTA+TGG | - | chr8.2:71241409-71241428 | MS.gene82023:CDS | 15.0% |
!! | ATAAATGGAGAAAAAACATT+AGG | + | chr8.2:71243486-71243505 | None:intergenic | 20.0% |
!! | CATAAATATAACACATTACA+AGG | + | chr8.2:71244289-71244308 | None:intergenic | 20.0% |
!! | CCATTTATTCTTTATGTATT+AGG | - | chr8.2:71243443-71243462 | MS.gene82023:intron | 20.0% |
!! | CCTAATACATAAAGAATAAA+TGG | + | chr8.2:71243446-71243465 | None:intergenic | 20.0% |
!! | TATATAAAAACACTGAATGT+AGG | + | chr8.2:71243688-71243707 | None:intergenic | 20.0% |
!! | TCAAATATTCAATTTCTCAA+TGG | - | chr8.2:71242276-71242295 | MS.gene82023:intron | 20.0% |
!! | TTGCATCAAATTGAAAAATA+GGG | + | chr8.2:71241350-71241369 | None:intergenic | 20.0% |
!! | TTTGCATCAAATTGAAAAAT+AGG | + | chr8.2:71241351-71241370 | None:intergenic | 20.0% |
!!! | ATGCTTGTTAAATAATGATT+TGG | - | chr8.2:71241490-71241509 | MS.gene82023:CDS | 20.0% |
!!! | TATTTAGCATGGATAATTTT+GGG | + | chr8.2:71242901-71242920 | None:intergenic | 20.0% |
!!! | TTAGTTTGTTATTTTCCAAA+AGG | - | chr8.2:71241775-71241794 | MS.gene82023:CDS | 20.0% |
! | AAAAAAACAAACTGCTCTAT+GGG | + | chr8.2:71242554-71242573 | None:intergenic | 25.0% |
! | AAAAAACATAGACATGTCAT+AGG | + | chr8.2:71243302-71243321 | None:intergenic | 25.0% |
! | AAATCATATTGTTCTGTTTG+TGG | - | chr8.2:71242780-71242799 | MS.gene82023:intron | 25.0% |
! | AAATTCTGCCACATATATTT+AGG | - | chr8.2:71242049-71242068 | MS.gene82023:intron | 25.0% |
! | ACATGTTTATGATCAATAAG+AGG | + | chr8.2:71241914-71241933 | None:intergenic | 25.0% |
! | ACATTACAAGGCAATTAAAT+TGG | + | chr8.2:71244277-71244296 | None:intergenic | 25.0% |
! | ATAAGATAAGTATATGCTGA+GGG | + | chr8.2:71242089-71242108 | None:intergenic | 25.0% |
! | ATATTGGACAATCAAAATCT+TGG | - | chr8.2:71243605-71243624 | MS.gene82023:intron | 25.0% |
! | ATGTGTTATATTTATGCAGA+TGG | - | chr8.2:71244293-71244312 | MS.gene82023:intron | 25.0% |
! | GAAGTTAAACAAATTGCTAT+TGG | - | chr8.2:71243735-71243754 | MS.gene82023:intron | 25.0% |
! | TAAAAAAACAAACTGCTCTA+TGG | + | chr8.2:71242555-71242574 | None:intergenic | 25.0% |
! | TCTTGTGATCAATAGATAAA+TGG | + | chr8.2:71243501-71243520 | None:intergenic | 25.0% |
! | TGTGATGAATTTGACATATT+AGG | - | chr8.2:71244114-71244133 | MS.gene82023:intron | 25.0% |
!! | ATTGGAATGATTTGGATATT+GGG | - | chr8.2:71241462-71241481 | MS.gene82023:CDS | 25.0% |
!! | CTATTTAGCATGGATAATTT+TGG | + | chr8.2:71242902-71242921 | None:intergenic | 25.0% |
!! | GTTTTCATAAGCATATTCTT+GGG | + | chr8.2:71243345-71243364 | None:intergenic | 25.0% |
!! | TGTATTAGTTTCAAGAAGTT+GGG | - | chr8.2:71242708-71242727 | MS.gene82023:intron | 25.0% |
!! | TGTTTTCATAAGCATATTCT+TGG | + | chr8.2:71243346-71243365 | None:intergenic | 25.0% |
!! | TTGTATTAGTTTCAAGAAGT+TGG | - | chr8.2:71242707-71242726 | MS.gene82023:intron | 25.0% |
!!! | AATTTTAATGAAAACAGACC+TGG | - | chr8.2:71242025-71242044 | MS.gene82023:intron | 25.0% |
!!! | CATTCAGTGTTTTTATATAG+CGG | - | chr8.2:71243689-71243708 | MS.gene82023:intron | 25.0% |
!!! | TAGGTTTTTTTTTTCCACAA+AGG | + | chr8.2:71243283-71243302 | None:intergenic | 25.0% |
!!! | TGTTATTTTTTCTGCTTTTG+TGG | - | chr8.2:71241531-71241550 | MS.gene82023:CDS | 25.0% |
!!! | TTTGTTTTTTTACAGGATGA+TGG | - | chr8.2:71242563-71242582 | MS.gene82023:intron | 25.0% |
AACAGTGTAAATTGTTGTCT+TGG | - | chr8.2:71242227-71242246 | MS.gene82023:intron | 30.0% | |
AATGAGTAACGAAATTTCCA+AGG | + | chr8.2:71241982-71242001 | None:intergenic | 30.0% | |
ACAACCATAACATAAAACCT+CGG | + | chr8.2:71244095-71244114 | None:intergenic | 30.0% | |
ACTCTTTACAATTGTATGTG+CGG | - | chr8.2:71241712-71241731 | MS.gene82023:intron | 30.0% | |
ACTTAATTTCTCTAAGTGTG+AGG | - | chr8.2:71242513-71242532 | MS.gene82023:intron | 30.0% | |
ATCCAAATCATTCCAATGAA+GGG | + | chr8.2:71241459-71241478 | None:intergenic | 30.0% | |
ATGAGTAACGAAATTTCCAA+GGG | + | chr8.2:71241981-71242000 | None:intergenic | 30.0% | |
ATGCAGTTAAAAAAAACGCT+AGG | + | chr8.2:71243923-71243942 | None:intergenic | 30.0% | |
CAATATGATTTCATGCAGAA+AGG | + | chr8.2:71242771-71242790 | None:intergenic | 30.0% | |
CATAAGATAAGTATATGCTG+AGG | + | chr8.2:71242090-71242109 | None:intergenic | 30.0% | |
CTCAGCATATACTTATCTTA+TGG | - | chr8.2:71242088-71242107 | MS.gene82023:intron | 30.0% | |
CTTAATTTCTCTAAGTGTGA+GGG | - | chr8.2:71242514-71242533 | MS.gene82023:intron | 30.0% | |
GATTTATAATCAGCTCACAT+CGG | + | chr8.2:71242597-71242616 | None:intergenic | 30.0% | |
GTAAATTGTTGTCTTGGAAA+TGG | - | chr8.2:71242233-71242252 | MS.gene82023:intron | 30.0% | |
TAATTTGATTCACACCATCA+CGG | + | chr8.2:71241669-71241688 | None:intergenic | 30.0% | |
TATCCAAATCATTCCAATGA+AGG | + | chr8.2:71241460-71241479 | None:intergenic | 30.0% | |
TGCAGTTAAAAAAAACGCTA+GGG | + | chr8.2:71243922-71243941 | None:intergenic | 30.0% | |
TTAGATGTTTGTGTCAACAT+CGG | - | chr8.2:71244062-71244081 | MS.gene82023:intron | 30.0% | |
TTATGAAAGTAGCTTAAGTG+TGG | - | chr8.2:71242134-71242153 | MS.gene82023:intron | 30.0% | |
TTATTTGTTTAAGTCTGCAG+TGG | - | chr8.2:71242335-71242354 | MS.gene82023:CDS | 30.0% | |
! | CATTGGAATGATTTGGATAT+TGG | - | chr8.2:71241461-71241480 | MS.gene82023:CDS | 30.0% |
! | GTATTAGTTTCAAGAAGTTG+GGG | - | chr8.2:71242709-71242728 | MS.gene82023:intron | 30.0% |
!! | AGGCAATTAAATTGGTGTTA+TGG | + | chr8.2:71244269-71244288 | None:intergenic | 30.0% |
!! | TGGTTATGTTTGTTTGTTGT+GGG | + | chr8.2:71241286-71241305 | None:intergenic | 30.0% |
!!! | AAACTGCATTGGCATTTTTT+GGG | + | chr8.2:71244400-71244419 | None:intergenic | 30.0% |
!!! | AGAGCAGTTTGTTTTTTTAC+AGG | - | chr8.2:71242556-71242575 | MS.gene82023:intron | 30.0% |
!!! | CTCAATTTTTTGCACAACAA+AGG | - | chr8.2:71241570-71241589 | MS.gene82023:CDS | 30.0% |
AACCAAAAACAACATGTGCA+AGG | + | chr8.2:71243235-71243254 | None:intergenic | 35.0% | |
AATGGTTACACTCAAGGAAA+AGG | - | chr8.2:71242251-71242270 | MS.gene82023:intron | 35.0% | |
ACGAAATTTCCAAGGGTTTA+AGG | + | chr8.2:71241974-71241993 | None:intergenic | 35.0% | |
AGAAATCTTGCAACTTTCCT+AGG | - | chr8.2:71242172-71242191 | MS.gene82023:intron | 35.0% | |
ATTCTATATGCAACATCCTC+AGG | - | chr8.2:71244341-71244360 | MS.gene82023:intron | 35.0% | |
CAAAAAATGCCAATGCAGTT+TGG | - | chr8.2:71244399-71244418 | MS.gene82023:intron | 35.0% | |
CAGTAATTTGAGTCAGATGT+CGG | + | chr8.2:71243874-71243893 | None:intergenic | 35.0% | |
CATACAATTGTAAAGAGTGG+AGG | + | chr8.2:71241710-71241729 | None:intergenic | 35.0% | |
CATATGCAACATTTGCAGTT+CGG | - | chr8.2:71243035-71243054 | MS.gene82023:intron | 35.0% | |
GAAATCTTGCAACTTTCCTA+GGG | - | chr8.2:71242173-71242192 | MS.gene82023:intron | 35.0% | |
GAGTTATCAATTGCAGATTG+TGG | + | chr8.2:71243849-71243868 | None:intergenic | 35.0% | |
GCACATACAATTGTAAAGAG+TGG | + | chr8.2:71241713-71241732 | None:intergenic | 35.0% | |
GGTCTAGTCCTAAATATATG+TGG | + | chr8.2:71242060-71242079 | None:intergenic | 35.0% | |
TAGCTTAAGTGTGGTCAATT+TGG | - | chr8.2:71242143-71242162 | MS.gene82023:intron | 35.0% | |
TATGGCATAACCATGTGTTT+GGG | - | chr8.2:71242106-71242125 | MS.gene82023:intron | 35.0% | |
TGTATGATAGTTCAACTGAG+TGG | - | chr8.2:71242390-71242409 | MS.gene82023:intron | 35.0% | |
TTATGAAATAGCGGCACTTT+AGG | - | chr8.2:71243786-71243805 | MS.gene82023:intron | 35.0% | |
TTATGGCATAACCATGTGTT+TGG | - | chr8.2:71242105-71242124 | MS.gene82023:intron | 35.0% | |
TTGCAGATTGTGGAAAATAG+CGG | + | chr8.2:71243839-71243858 | None:intergenic | 35.0% | |
TTTATTGTTCCTCCCTTCAT+TGG | - | chr8.2:71241444-71241463 | MS.gene82023:CDS | 35.0% | |
TTTGATTGTCCAATATTGCC+AGG | + | chr8.2:71243601-71243620 | None:intergenic | 35.0% | |
! | AGAATTACAGATACGCCTTT+TGG | + | chr8.2:71241793-71241812 | None:intergenic | 35.0% |
! | GTGGTTATGTTTGTTTGTTG+TGG | + | chr8.2:71241287-71241306 | None:intergenic | 35.0% |
! | GTTCTTGCTCATTTTGCTTT+TGG | - | chr8.2:71243131-71243150 | MS.gene82023:intron | 35.0% |
! | TATATGTGGCAGAATTTTCC+AGG | + | chr8.2:71242046-71242065 | None:intergenic | 35.0% |
! | TGTATGTGCGGATTATTTCT+CGG | - | chr8.2:71241724-71241743 | MS.gene82023:intron | 35.0% |
!! | ATGGATAATTTTGGGAAGGA+TGG | + | chr8.2:71242893-71242912 | None:intergenic | 35.0% |
!! | ATTGCCGAGGTTTTATGTTA+TGG | - | chr8.2:71244088-71244107 | MS.gene82023:intron | 35.0% |
!! | CACTGTTCTAGAATTACATC+CGG | + | chr8.2:71242214-71242233 | None:intergenic | 35.0% |
!! | TACTTTTTGAATCTGCTCAG+TGG | + | chr8.2:71241306-71241325 | None:intergenic | 35.0% |
!! | TAGCATGGATAATTTTGGGA+AGG | + | chr8.2:71242897-71242916 | None:intergenic | 35.0% |
!! | TTTGTTTGTTGTGGGAATGA+AGG | + | chr8.2:71241278-71241297 | None:intergenic | 35.0% |
!!! | AACTGCATTGGCATTTTTTG+GGG | + | chr8.2:71244399-71244418 | None:intergenic | 35.0% |
!!! | AGATATTGATGGTGGGTTTT+TGG | + | chr8.2:71242925-71242944 | None:intergenic | 35.0% |
!!! | CAAACTGCATTGGCATTTTT+TGG | + | chr8.2:71244401-71244420 | None:intergenic | 35.0% |
!!! | CTAGGATCTATTTTTACCTG+TGG | + | chr8.2:71244218-71244237 | None:intergenic | 35.0% |
!!! | TTCCTTGCACATGTTGTTTT+TGG | - | chr8.2:71243230-71243249 | MS.gene82023:intron | 35.0% |
AAAAAAACGCTAGGGATCAG+AGG | + | chr8.2:71243914-71243933 | None:intergenic | 40.0% | |
AACGGAGTCATATTCGGATA+TGG | + | chr8.2:71242864-71242883 | None:intergenic | 40.0% | |
ACATAGACACCTTAAACCCT+TGG | - | chr8.2:71241962-71241981 | MS.gene82023:intron | 40.0% | |
ACCACACTTTGCACTTAGAA+AGG | + | chr8.2:71242651-71242670 | None:intergenic | 40.0% | |
AGTATATGCTGAGGGATTGA+CGG | + | chr8.2:71242081-71242100 | None:intergenic | 40.0% | |
ATGAGACTCGATCGTAGTTT+GGG | - | chr8.2:71242617-71242636 | MS.gene82023:intron | 40.0% | |
CAAATCATTCCAATGAAGGG+AGG | + | chr8.2:71241456-71241475 | None:intergenic | 40.0% | |
CAAGCTATGCAAGGTCAAAT+GGG | - | chr8.2:71244480-71244499 | MS.gene82023:intron | 40.0% | |
CATAAGTTCTCCCAAACACA+TGG | + | chr8.2:71242119-71242138 | None:intergenic | 40.0% | |
CGAAGTATGTATTTCCGTGA+TGG | - | chr8.2:71241652-71241671 | MS.gene82023:intron | 40.0% | |
CTCCCTTCATTGGAATGATT+TGG | - | chr8.2:71241454-71241473 | MS.gene82023:CDS | 40.0% | |
CTTGGAAATGGTTACACTCA+AGG | - | chr8.2:71242245-71242264 | MS.gene82023:intron | 40.0% | |
GGCATCATAGGAATCATTTG+CGG | + | chr8.2:71241257-71241276 | None:intergenic | 40.0% | |
GTAATTTACAAGCCCTGTCT+TGG | - | chr8.2:71243537-71243556 | MS.gene82023:intron | 40.0% | |
GTGTTGTCAAATATCAGCCA+TGG | + | chr8.2:71242960-71242979 | None:intergenic | 40.0% | |
TCCTTTCTAAGTGCAAAGTG+TGG | - | chr8.2:71242647-71242666 | MS.gene82023:intron | 40.0% | |
TGGCTGATATTTGACAACAC+TGG | - | chr8.2:71242960-71242979 | MS.gene82023:intron | 40.0% | |
! | AGGGTTTAAGGTGTCTATGT+AGG | + | chr8.2:71241962-71241981 | None:intergenic | 40.0% |
! | ATAGATCCTAGCTTGTGTCT+TGG | - | chr8.2:71244227-71244246 | MS.gene82023:intron | 40.0% |
!! | AATTCTTCTGAAGCTGAGCT+TGG | + | chr8.2:71244142-71244161 | None:intergenic | 40.0% |
!! | AGTGGACAGTTTTTAAGCAC+AGG | - | chr8.2:71242353-71242372 | MS.gene82023:CDS | 40.0% |
!! | ATTTGACAACACTGGCTTGT+GGG | - | chr8.2:71242968-71242987 | MS.gene82023:intron | 40.0% |
!! | GATAATTTTGGGAAGGATGG+TGG | + | chr8.2:71242890-71242909 | None:intergenic | 40.0% |
!! | GTGGACAGTTTTTAAGCACA+GGG | - | chr8.2:71242354-71242373 | MS.gene82023:CDS | 40.0% |
!! | TATTTGACAACACTGGCTTG+TGG | - | chr8.2:71242967-71242986 | MS.gene82023:intron | 40.0% |
!! | TATTTTTACCTGTGGAGGCA+AGG | + | chr8.2:71244210-71244229 | None:intergenic | 40.0% |
!! | TGAGTGGAGTTTTATGCATC+CGG | - | chr8.2:71242406-71242425 | MS.gene82023:intron | 40.0% |
!!! | ACTGCATTGGCATTTTTTGG+GGG | + | chr8.2:71244398-71244417 | None:intergenic | 40.0% |
!!! | GCACATGTTGTTTTTGGTTG+TGG | - | chr8.2:71243236-71243255 | MS.gene82023:intron | 40.0% |
!!! | GGATCTATTTTTACCTGTGG+AGG | + | chr8.2:71244215-71244234 | None:intergenic | 40.0% |
!!! | GGGTTTTTGGCTATTTAGCA+TGG | + | chr8.2:71242912-71242931 | None:intergenic | 40.0% |
AACTTTCCTAGGGCAAAAGG+TGG | - | chr8.2:71242183-71242202 | MS.gene82023:intron | 45.0% | |
ACTGCATGAAATGCCAAGAC+AGG | + | chr8.2:71243553-71243572 | None:intergenic | 45.0% | |
AGAATCCTTGTTGCATCGCA+GGG | + | chr8.2:71244326-71244345 | None:intergenic | 45.0% | |
AGTGGAGATGCTTCAGAAGA+GGG | - | chr8.2:71244681-71244700 | MS.gene82023:CDS | 45.0% | |
ATGCAACATTTGCAGTTCGG+AGG | - | chr8.2:71243038-71243057 | MS.gene82023:intron | 45.0% | |
ATGCACTCTCTTTGCCTTTG+TGG | - | chr8.2:71243266-71243285 | MS.gene82023:intron | 45.0% | |
CAACACCTACATGACCAAGA+GGG | + | chr8.2:71242310-71242329 | None:intergenic | 45.0% | |
CAGAGGATGAAGAGACAATC+AGG | + | chr8.2:71243897-71243916 | None:intergenic | 45.0% | |
CATGAGACTCGATCGTAGTT+TGG | - | chr8.2:71242616-71242635 | MS.gene82023:intron | 45.0% | |
CATGCAGAAAGGTTGCAACA+AGG | + | chr8.2:71242760-71242779 | None:intergenic | 45.0% | |
CTACATCAGCAAGCTATGCA+AGG | - | chr8.2:71244471-71244490 | MS.gene82023:intron | 45.0% | |
CTGCATGAAATGCCAAGACA+GGG | + | chr8.2:71243552-71243571 | None:intergenic | 45.0% | |
GAAGCTGATCCTGGCAATAT+TGG | - | chr8.2:71243589-71243608 | MS.gene82023:intron | 45.0% | |
GAAGTTGGGGTAGAGTAATG+AGG | - | chr8.2:71242722-71242741 | MS.gene82023:intron | 45.0% | |
GCAAGCTATGCAAGGTCAAA+TGG | - | chr8.2:71244479-71244498 | MS.gene82023:intron | 45.0% | |
GTCAGGGAGTAGTATTAGTG+AGG | - | chr8.2:71242483-71242502 | MS.gene82023:intron | 45.0% | |
TAGAATCCTTGTTGCATCGC+AGG | + | chr8.2:71244327-71244346 | None:intergenic | 45.0% | |
TGAGAACAAGAAGCTGATCC+TGG | - | chr8.2:71243580-71243599 | MS.gene82023:intron | 45.0% | |
TGCAACTTTCCTAGGGCAAA+AGG | - | chr8.2:71242180-71242199 | MS.gene82023:intron | 45.0% | |
TGCGTGTTTGAGTCGCAATT+TGG | - | chr8.2:71243068-71243087 | MS.gene82023:intron | 45.0% | |
TGCTGATCCTGCATTTGATG+CGG | + | chr8.2:71244429-71244448 | None:intergenic | 45.0% | |
TGGAAGCAAGCAAGATGCAT+CGG | - | chr8.2:71244602-71244621 | MS.gene82023:intron | 45.0% | |
TGGTAATCCGCATCAAATGC+AGG | - | chr8.2:71244419-71244438 | MS.gene82023:intron | 45.0% | |
TGTTTGAGTCGCAATTTGGC+AGG | - | chr8.2:71243072-71243091 | MS.gene82023:intron | 45.0% | |
! | CCATGGCAGATATTGATGGT+GGG | + | chr8.2:71242932-71242951 | None:intergenic | 45.0% |
! | CTAGCTTGTGTCTTGGAAGT+CGG | - | chr8.2:71244234-71244253 | MS.gene82023:intron | 45.0% |
! | GTGTGAGGGAAGTATACTGA+AGG | - | chr8.2:71242528-71242547 | MS.gene82023:intron | 45.0% |
! | TAAGCACAGGGTGTTCTATG+CGG | - | chr8.2:71242366-71242385 | MS.gene82023:intron | 45.0% |
! | TGCGGATTACCAAACTGCAT+TGG | + | chr8.2:71244411-71244430 | None:intergenic | 45.0% |
!! | AGTTGGCAATTGTGCTGCTT+TGG | - | chr8.2:71242443-71242462 | MS.gene82023:intron | 45.0% |
!! | ATTGTGCTGCTTTGGTCAAC+AGG | - | chr8.2:71242451-71242470 | MS.gene82023:intron | 45.0% |
!! | TGTGGGAATGAAGGCATCAT+AGG | + | chr8.2:71241269-71241288 | None:intergenic | 45.0% |
!!! | TGGTTGGTATGGCGGATTTT+TGG | + | chr8.2:71242828-71242847 | None:intergenic | 45.0% |
!! | ATAACTTATAATTAAAAAAT+AGG | + | chr8.2:71241385-71241404 | None:intergenic | 5.0% |
!! | TAACTTATAATTAAAAAATA+GGG | + | chr8.2:71241384-71241403 | None:intergenic | 5.0% |
AAACTAAGACTCAGCCTGCC+CGG | + | chr8.2:71241860-71241879 | None:intergenic | 50.0% | |
AAATGGGACTTAGACCCGGA+GGG | - | chr8.2:71244496-71244515 | MS.gene82023:intron | 50.0% | |
AAGCAAGATGCATCGGAAGC+TGG | - | chr8.2:71244609-71244628 | MS.gene82023:intron | 50.0% | |
ACAAGACGCTGTTCTCAGCA+AGG | + | chr8.2:71241832-71241851 | None:intergenic | 50.0% | |
ACTCGATCGTAGTTTGGGAG+TGG | - | chr8.2:71242622-71242641 | MS.gene82023:intron | 50.0% | |
AGACCCGGAGGGATAAACAA+CGG | - | chr8.2:71244507-71244526 | MS.gene82023:intron | 50.0% | |
AGGGCAAAAGGTGGTTCTTC+CGG | - | chr8.2:71242192-71242211 | MS.gene82023:intron | 50.0% | |
ATGCCGTTGTTTATCCCTCC+GGG | + | chr8.2:71244513-71244532 | None:intergenic | 50.0% | |
CAACTCAACTTGCATGCCAC+CGG | + | chr8.2:71242428-71242447 | None:intergenic | 50.0% | |
CAATGGATGTCTAGCCCTCT+TGG | - | chr8.2:71242293-71242312 | MS.gene82023:intron | 50.0% | |
CAGTGGAGATGCTTCAGAAG+AGG | - | chr8.2:71244680-71244699 | MS.gene82023:CDS | 50.0% | |
CATGCCGTTGTTTATCCCTC+CGG | + | chr8.2:71244514-71244533 | None:intergenic | 50.0% | |
CCAACACCTACATGACCAAG+AGG | + | chr8.2:71242311-71242330 | None:intergenic | 50.0% | |
CCCACCATCAATATCTGCCA+TGG | - | chr8.2:71242929-71242948 | MS.gene82023:intron | 50.0% | |
CCTCTTGGTCATGTAGGTGT+TGG | - | chr8.2:71242308-71242327 | MS.gene82023:CDS | 50.0% | |
CGACTTCCAAGACACAAGCT+AGG | + | chr8.2:71244236-71244255 | None:intergenic | 50.0% | |
CTCGATCGTAGTTTGGGAGT+GGG | - | chr8.2:71242623-71242642 | MS.gene82023:intron | 50.0% | |
GACGCCATGGCAGATATTGA+TGG | + | chr8.2:71242936-71242955 | None:intergenic | 50.0% | |
GCCATGGCAGATATTGATGG+TGG | + | chr8.2:71242933-71242952 | None:intergenic | 50.0% | |
GCTTGTGGGTTTGCAAGCTT+TGG | - | chr8.2:71242982-71243001 | MS.gene82023:intron | 50.0% | |
GGTCAAATGGGACTTAGACC+CGG | - | chr8.2:71244492-71244511 | MS.gene82023:intron | 50.0% | |
GTTGTCCTTCGGAGTCAGTT+TGG | - | chr8.2:71243157-71243176 | MS.gene82023:intron | 50.0% | |
GTTTGTGGCAGTGTTGTCCA+TGG | - | chr8.2:71242795-71242814 | MS.gene82023:intron | 50.0% | |
TACTACTCCCTGACTCACAC+AGG | + | chr8.2:71242477-71242496 | None:intergenic | 50.0% | |
TCAACATCGGTACATTGCCG+AGG | - | chr8.2:71244075-71244094 | MS.gene82023:intron | 50.0% | |
TCTAGCCCTCTTGGTCATGT+AGG | - | chr8.2:71242302-71242321 | MS.gene82023:intron | 50.0% | |
TGGCGCAACGGAGTCATATT+CGG | + | chr8.2:71242870-71242889 | None:intergenic | 50.0% | |
TTGAGTCGCAATTTGGCAGG+CGG | - | chr8.2:71243075-71243094 | MS.gene82023:intron | 50.0% | |
! | CCACATGTTGGTTGGTATGG+CGG | + | chr8.2:71242836-71242855 | None:intergenic | 50.0% |
! | GAAGAACCACCTTTTGCCCT+AGG | + | chr8.2:71242192-71242211 | None:intergenic | 50.0% |
! | GCTTTTGGCGTGTTGTCCTT+CGG | - | chr8.2:71243146-71243165 | MS.gene82023:intron | 50.0% |
! | GTGGGTTTGCAAGCTTTGGT+CGG | - | chr8.2:71242986-71243005 | MS.gene82023:intron | 50.0% |
! | TGGGTTTGCAAGCTTTGGTC+GGG | - | chr8.2:71242987-71243006 | MS.gene82023:intron | 50.0% |
!! | CTTGGTCATGTAGGTGTTGG+TGG | - | chr8.2:71242311-71242330 | MS.gene82023:CDS | 50.0% |
!! | GTGGAGTTTTATGCATCCGG+TGG | - | chr8.2:71242409-71242428 | MS.gene82023:intron | 50.0% |
AACAGCGTCTTGTACCTGCC+GGG | - | chr8.2:71241839-71241858 | MS.gene82023:intron | 55.0% | |
ACATCCTCAGGCTGCAGCAA+TGG | - | chr8.2:71244353-71244372 | MS.gene82023:intron | 55.0% | |
CAAATGGGACTTAGACCCGG+AGG | - | chr8.2:71244495-71244514 | MS.gene82023:intron | 55.0% | |
CAACAGGCCTGTGTGAGTCA+GGG | - | chr8.2:71242467-71242486 | MS.gene82023:intron | 55.0% | |
CATGCATCCAATGCACAGCG+AGG | - | chr8.2:71244530-71244549 | MS.gene82023:intron | 55.0% | |
CCGCCATACCAACCAACATG+TGG | - | chr8.2:71242833-71242852 | MS.gene82023:intron | 55.0% | |
CGGGCGGTATGTCATGTCAA+GGG | - | chr8.2:71243006-71243025 | MS.gene82023:intron | 55.0% | |
CTTCGGAGTCAGTTTGGCTG+CGG | - | chr8.2:71243163-71243182 | MS.gene82023:intron | 55.0% | |
GAACAGCGTCTTGTACCTGC+CGG | - | chr8.2:71241838-71241857 | MS.gene82023:intron | 55.0% | |
GATATGGCAGCGCCACATGT+TGG | + | chr8.2:71242848-71242867 | None:intergenic | 55.0% | |
GCAGCAATGGCTCAGCAACA+AGG | - | chr8.2:71244366-71244385 | MS.gene82023:intron | 55.0% | |
TCAACAGGCCTGTGTGAGTC+AGG | - | chr8.2:71242466-71242485 | MS.gene82023:intron | 55.0% | |
TCCACTGTTATGCGCAGCAG+CGG | + | chr8.2:71244667-71244686 | None:intergenic | 55.0% | |
TCGGGCGGTATGTCATGTCA+AGG | - | chr8.2:71243005-71243024 | MS.gene82023:intron | 55.0% | |
TGTGGCAGTGTTGTCCATGG+CGG | - | chr8.2:71242798-71242817 | MS.gene82023:intron | 55.0% | |
TTTACCTGTGGAGGCAAGGC+CGG | + | chr8.2:71244206-71244225 | None:intergenic | 55.0% | |
! | CGGTGGCATGCAAGTTGAGT+TGG | - | chr8.2:71242426-71242445 | MS.gene82023:intron | 55.0% |
! | GCGCCACATGTTGGTTGGTA+TGG | + | chr8.2:71242839-71242858 | None:intergenic | 55.0% |
! | GTTTGCAAGCTTTGGTCGGG+CGG | - | chr8.2:71242990-71243009 | MS.gene82023:intron | 55.0% |
!!! | GGATTTTTGGCTCTCCGCCA+TGG | + | chr8.2:71242815-71242834 | None:intergenic | 55.0% |
AGAGCAGCCTCGCTGTGCAT+TGG | + | chr8.2:71244540-71244559 | None:intergenic | 60.0% | |
ATGCACAGCGAGGCTGCTCT+CGG | - | chr8.2:71244540-71244559 | MS.gene82023:intron | 60.0% | |
CAGCAGCGGAAGACGTTCCT+TGG | + | chr8.2:71244653-71244672 | None:intergenic | 60.0% | |
CCTTGTTGCATCGCAGGGTG+CGG | + | chr8.2:71244321-71244340 | None:intergenic | 60.0% | |
CGTTCCTTGGCCATCTCCAC+CGG | + | chr8.2:71244640-71244659 | None:intergenic | 60.0% | |
CTTGTTGCATCGCAGGGTGC+GGG | + | chr8.2:71244320-71244339 | None:intergenic | 60.0% | |
GCAGTGGCGGTCCAAATGAC+GGG | - | chr8.2:71244571-71244590 | MS.gene82023:intron | 60.0% | |
GGCAGTGGCGGTCCAAATGA+CGG | - | chr8.2:71244570-71244589 | MS.gene82023:intron | 60.0% | |
TATCAGCCATGGCGACGCCA+TGG | + | chr8.2:71242949-71242968 | None:intergenic | 60.0% | |
TATCTGCCATGGCGTCGCCA+TGG | - | chr8.2:71242940-71242959 | MS.gene82023:intron | 60.0% | |
TCCGCTGCTGCGCATAACAG+TGG | - | chr8.2:71244663-71244682 | MS.gene82023:CDS | 60.0% | |
TGACGCGCAGCCACAAACAC+CGG | - | chr8.2:71244184-71244203 | MS.gene82023:intron | 60.0% | |
TGAGCCATTGCTGCAGCCTG+AGG | + | chr8.2:71244360-71244379 | None:intergenic | 60.0% | |
TGGCAGCGCCACATGTTGGT+TGG | + | chr8.2:71242844-71242863 | None:intergenic | 60.0% | |
TTGTTGCATCGCAGGGTGCG+GGG | + | chr8.2:71244319-71244338 | None:intergenic | 60.0% | |
! | CGCAGCCAAACTGACTCCGA+AGG | + | chr8.2:71243165-71243184 | None:intergenic | 60.0% |
! | TGGGAAGGATGGTGGCGCAA+CGG | + | chr8.2:71242882-71242901 | None:intergenic | 60.0% |
AACACCGGCCTTGCCTCCAC+AGG | - | chr8.2:71244199-71244218 | MS.gene82023:intron | 65.0% | |
ACAGCCGGTGGAGATGGCCA+AGG | - | chr8.2:71244633-71244652 | MS.gene82023:CDS | 65.0% | |
CCACCACCACGCCCGTCATT+TGG | + | chr8.2:71244585-71244604 | None:intergenic | 65.0% | |
CCGCACCCTGCGATGCAACA+AGG | - | chr8.2:71244318-71244337 | MS.gene82023:intron | 65.0% | |
GAGGCTGCTCTCGGAGGTAG+CGG | - | chr8.2:71244549-71244568 | MS.gene82023:intron | 65.0% | |
GCATCGGAAGCTGGCACAGC+CGG | - | chr8.2:71244618-71244637 | MS.gene82023:intron | 65.0% | |
GGAGGCAAGGCCGGTGTTTG+TGG | + | chr8.2:71244197-71244216 | None:intergenic | 65.0% | |
TAAGACTCAGCCTGCCCGGC+AGG | + | chr8.2:71241856-71241875 | None:intergenic | 65.0% | |
!! | CCAAATGACGGGCGTGGTGG+TGG | - | chr8.2:71244582-71244601 | MS.gene82023:intron | 65.0% |
!! | GGTCCAAATGACGGGCGTGG+TGG | - | chr8.2:71244579-71244598 | MS.gene82023:intron | 65.0% |
CACAGCGAGGCTGCTCTCGG+AGG | - | chr8.2:71244543-71244562 | MS.gene82023:intron | 70.0% | |
GCGTCTTGTACCTGCCGGGC+AGG | - | chr8.2:71241843-71241862 | MS.gene82023:intron | 70.0% | |
GCTGGCACAGCCGGTGGAGA+TGG | - | chr8.2:71244627-71244646 | MS.gene82023:intron | 70.0% | |
TCGGAAGCTGGCACAGCCGG+TGG | - | chr8.2:71244621-71244640 | MS.gene82023:intron | 70.0% | |
! | CTCGGAGGTAGCGGCAGTGG+CGG | - | chr8.2:71244558-71244577 | MS.gene82023:intron | 70.0% |
! | GCTCTCGGAGGTAGCGGCAG+TGG | - | chr8.2:71244555-71244574 | MS.gene82023:intron | 70.0% |
!! | GGCGGTCCAAATGACGGGCG+TGG | - | chr8.2:71244576-71244595 | MS.gene82023:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 71241242 | 71244710 | 71241242 | ID=MS.gene82023 |
chr8.2 | mRNA | 71241242 | 71244710 | 71241242 | ID=MS.gene82023.t1;Parent=MS.gene82023 |
chr8.2 | exon | 71244630 | 71244710 | 71244630 | ID=MS.gene82023.t1.exon1;Parent=MS.gene82023.t1 |
chr8.2 | CDS | 71244630 | 71244710 | 71244630 | ID=cds.MS.gene82023.t1;Parent=MS.gene82023.t1 |
chr8.2 | exon | 71242304 | 71242380 | 71242304 | ID=MS.gene82023.t1.exon2;Parent=MS.gene82023.t1 |
chr8.2 | CDS | 71242304 | 71242380 | 71242304 | ID=cds.MS.gene82023.t1;Parent=MS.gene82023.t1 |
chr8.2 | exon | 71241732 | 71241816 | 71241732 | ID=MS.gene82023.t1.exon3;Parent=MS.gene82023.t1 |
chr8.2 | CDS | 71241732 | 71241816 | 71241732 | ID=cds.MS.gene82023.t1;Parent=MS.gene82023.t1 |
chr8.2 | exon | 71241242 | 71241640 | 71241242 | ID=MS.gene82023.t1.exon4;Parent=MS.gene82023.t1 |
chr8.2 | CDS | 71241242 | 71241640 | 71241242 | ID=cds.MS.gene82023.t1;Parent=MS.gene82023.t1 |
Gene Sequence |
Protein sequence |