AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53859


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53859.t1 MTR_3g065190 96.481 341 5 1 1 334 39 379 0.0 652
MS.gene53859.t1 MTR_4g085540 40.136 147 78 3 3 141 50 194 2.91e-27 112
MS.gene53859.t1 MTR_4g085540 34.375 160 90 5 3 150 138 294 1.61e-18 87.0
MS.gene53859.t1 MTR_4g085540 29.143 175 97 4 3 153 229 400 8.24e-16 78.6
MS.gene53859.t1 MTR_1g019150 30.522 249 148 8 3 240 48 282 4.66e-27 112
MS.gene53859.t1 MTR_1g019150 31.073 177 102 6 3 162 136 309 2.65e-16 80.1
MS.gene53859.t1 MTR_1g019150 28.977 176 97 4 3 153 227 399 3.58e-14 73.9
MS.gene53859.t1 MTR_3g102040 36.667 210 110 6 3 202 40 236 9.72e-27 111
MS.gene53859.t1 MTR_3g102040 32.738 168 94 6 3 154 128 292 6.29e-14 73.2
MS.gene53859.t1 MTR_3g102040 31.429 175 93 5 3 153 219 390 4.72e-11 64.3
MS.gene53859.t1 MTR_6g040190 37.333 150 82 4 3 143 41 187 1.39e-25 107
MS.gene53859.t1 MTR_1g097440 35.366 164 94 4 3 157 46 206 2.24e-25 107
MS.gene53859.t1 MTR_1g097440 29.143 175 96 5 1 150 223 394 1.01e-13 72.4
MS.gene53859.t1 MTR_4g124940 30.811 185 113 4 2 176 61 240 2.88e-24 102
MS.gene53859.t1 MTR_3g109090 31.176 170 99 4 1 161 58 218 1.69e-22 97.8
MS.gene53859.t1 MTR_3g109090 31.176 170 99 4 1 161 74 234 2.05e-22 97.8
MS.gene53859.t1 MTR_8g022050 30.645 186 106 5 2 173 77 253 8.35e-22 95.9
MS.gene53859.t1 MTR_2g097960 31.481 162 98 3 3 151 31 192 1.04e-19 89.7
MS.gene53859.t1 MTR_7g102730 32.051 156 96 2 3 150 26 179 1.06e-19 90.5
MS.gene53859.t1 MTR_7g102730 34.591 159 85 5 3 147 114 267 6.85e-19 87.8
MS.gene53859.t1 MTR_7g102730 26.829 287 177 7 2 258 204 487 1.01e-16 81.3
MS.gene53859.t1 MTR_1g061870 33.974 156 93 3 3 150 31 184 2.27e-19 89.4
MS.gene53859.t1 MTR_1g061870 33.121 157 90 3 3 147 119 272 9.10e-18 84.3
MS.gene53859.t1 MTR_1g061870 27.381 168 99 5 3 150 210 374 1.06e-12 68.9
MS.gene53859.t1 MTR_4g122650 36.364 165 88 8 6 155 107 269 1.01e-18 87.4
MS.gene53859.t1 MTR_3g075500 33.333 168 94 3 1 151 123 289 5.46e-17 80.5
MS.gene53859.t1 MTR_4g104470 32.515 163 91 3 1 147 136 295 8.55e-17 80.1
MS.gene53859.t1 MTR_3g101370 25.926 189 121 3 3 172 109 297 1.37e-16 79.3
MS.gene53859.t1 MTR_3g101370 25.946 185 118 3 3 168 109 293 2.34e-16 79.7
MS.gene53859.t1 MTR_7g106440 29.518 166 91 4 3 144 125 288 1.18e-15 77.0
MS.gene53859.t1 MTR_3g080130 44.304 79 43 1 69 147 38 115 4.81e-15 71.6
MS.gene53859.t1 MTR_1g020080 25.641 195 129 4 3 184 113 304 8.76e-15 75.1
MS.gene53859.t1 MTR_1g020080 25.532 188 122 4 3 172 113 300 9.52e-15 74.3
MS.gene53859.t1 MTR_1g056520 30.872 149 81 4 3 131 124 270 1.16e-14 73.9
MS.gene53859.t1 MTR_3g075500 32.886 149 82 3 1 132 123 270 3.30e-14 72.0
MS.gene53859.t1 MTR_3g084040 44.872 78 41 2 67 144 36 111 3.81e-14 69.3
MS.gene53859.t1 MTR_6g040070 36.264 91 55 3 67 157 15 102 3.84e-14 73.9
MS.gene53859.t1 MTR_6g040070 29.213 178 98 6 1 153 119 293 4.23e-13 70.5
MS.gene53859.t1 MTR_4g086600 26.786 168 105 1 2 151 131 298 5.66e-14 72.8
MS.gene53859.t1 MTR_4g109540 43.038 79 44 1 69 147 44 121 6.06e-14 71.2
MS.gene53859.t1 MTR_2g022950 29.530 149 89 4 3 136 76 223 1.32e-13 70.5
MS.gene53859.t1 MTR_1g045510 30.573 157 97 2 2 147 128 283 1.88e-13 70.1
MS.gene53859.t1 MTR_2g022950 29.530 149 89 4 3 136 76 223 2.25e-13 70.9
MS.gene53859.t1 MTR_3g025880 32.407 108 67 2 45 147 17 123 2.67e-13 70.9
MS.gene53859.t1 MTR_7g013730 41.975 81 46 1 67 147 40 119 3.54e-13 68.9
MS.gene53859.t1 MTR_4g052940 30.769 130 89 1 1 129 124 253 4.43e-13 70.1
MS.gene53859.t1 MTR_4g070080 46.053 76 40 1 69 144 8 82 7.93e-13 65.1
MS.gene53859.t1 MTR_4g070080 46.053 76 40 1 69 144 8 82 1.73e-12 65.1
MS.gene53859.t1 MTR_2g022950 29.530 149 89 4 3 136 76 223 2.06e-12 67.0
MS.gene53859.t1 MTR_7g010360 32.308 130 87 1 1 129 364 493 2.13e-12 68.6
MS.gene53859.t1 MTR_4g052940 33.333 117 77 1 1 116 124 240 6.33e-12 66.2
MS.gene53859.t1 MTR_4g109540 39.080 87 44 2 69 147 44 129 1.46e-11 64.3
MS.gene53859.t1 MTR_4g070140 43.421 76 42 1 69 144 10 84 2.86e-11 62.4
MS.gene53859.t1 MTR_7g107580 26.178 191 126 5 3 182 32 218 4.96e-11 63.9
MS.gene53859.t1 MTR_4g070190 42.105 76 43 1 69 144 10 84 5.18e-11 60.8
MS.gene53859.t1 MTR_6g004810 27.703 148 94 4 7 144 65 209 5.31e-11 63.5
MS.gene53859.t1 MTR_7g107580 26.702 191 124 6 3 182 32 217 7.86e-11 63.2
MS.gene53859.t1 MTR_7g107580 26.702 191 124 6 3 182 32 217 8.08e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53859.t1 AT2G18510 82.569 218 23 3 1 211 39 248 5.90e-125 363
MS.gene53859.t1 AT4G34110 44.218 147 72 3 3 141 52 196 1.60e-29 119
MS.gene53859.t1 AT4G34110 29.375 160 98 4 3 150 140 296 1.24e-14 75.1
MS.gene53859.t1 AT4G34110 29.143 175 97 5 3 153 231 402 3.50e-14 73.9
MS.gene53859.t1 AT1G49760 40.491 163 82 5 3 153 61 220 2.66e-29 119
MS.gene53859.t1 AT1G49760 28.696 345 195 17 3 311 149 478 5.71e-17 82.4
MS.gene53859.t1 AT1G49760 29.379 177 98 5 1 153 238 411 8.79e-15 75.9
MS.gene53859.t1 AT1G49760 40.491 163 82 5 3 153 61 220 2.66e-29 119
MS.gene53859.t1 AT1G49760 28.696 345 195 17 3 311 149 478 5.71e-17 82.4
MS.gene53859.t1 AT1G49760 29.379 177 98 5 1 153 238 411 8.79e-15 75.9
MS.gene53859.t1 AT1G54080 33.333 183 105 5 2 173 78 254 7.68e-28 112
MS.gene53859.t1 AT1G54080 32.796 186 106 5 2 173 78 258 3.52e-27 110
MS.gene53859.t1 AT3G14100 36.646 161 86 4 2 152 74 228 1.55e-25 106
MS.gene53859.t1 AT1G71770 35.032 157 91 4 3 151 75 228 1.92e-25 107
MS.gene53859.t1 AT1G71770 33.143 175 98 5 3 161 162 333 7.37e-18 85.1
MS.gene53859.t1 AT1G71770 35.032 157 91 4 3 151 75 228 1.92e-25 107
MS.gene53859.t1 AT1G71770 33.143 175 98 5 3 161 162 333 7.37e-18 85.1
MS.gene53859.t1 AT1G22760 32.530 166 101 4 3 160 65 227 4.13e-25 106
MS.gene53859.t1 AT1G22760 35.429 175 94 5 3 161 152 323 1.52e-21 95.9
MS.gene53859.t1 AT1G22760 29.070 172 95 5 3 150 245 413 1.02e-13 72.4
MS.gene53859.t1 AT2G23350 38.095 147 81 3 3 141 62 206 4.54e-25 106
MS.gene53859.t1 AT2G23350 32.919 161 91 5 3 150 150 306 1.56e-15 77.8
MS.gene53859.t1 AT2G23350 28.115 313 175 9 3 277 241 541 1.19e-14 75.1
MS.gene53859.t1 AT1G17370 30.270 185 114 4 2 176 69 248 1.63e-23 100
MS.gene53859.t1 AT1G17370 33.750 160 92 3 2 152 69 223 3.21e-23 99.8
MS.gene53859.t1 AT4G24770 34.615 156 87 2 6 147 169 323 7.51e-20 89.0
MS.gene53859.t1 AT4G24770 34.615 156 87 2 6 147 169 323 7.51e-20 89.0
MS.gene53859.t1 AT5G19350 32.298 161 97 2 3 151 40 200 2.10e-19 89.0
MS.gene53859.t1 AT5G19350 32.298 161 97 2 3 151 40 200 2.28e-19 88.6
MS.gene53859.t1 AT3G19130 28.889 225 131 4 3 213 124 333 2.03e-18 85.9
MS.gene53859.t1 AT4G16280 33.186 226 127 8 1 212 134 349 2.05e-18 86.3
MS.gene53859.t1 AT4G16280 36.842 152 80 7 7 144 65 214 2.26e-18 86.7
MS.gene53859.t1 AT5G50250 33.333 156 89 2 6 147 132 286 2.49e-18 84.3
MS.gene53859.t1 AT4G16280 33.184 223 125 8 7 215 140 352 3.03e-18 86.3
MS.gene53859.t1 AT3G52380 30.588 170 92 4 3 148 132 299 4.69e-17 81.3
MS.gene53859.t1 AT5G54900 29.452 146 89 1 6 137 79 224 1.68e-16 80.1
MS.gene53859.t1 AT1G49600 27.136 199 125 3 3 181 135 333 3.69e-16 79.3
MS.gene53859.t1 AT1G47490 30.065 153 93 2 13 151 129 281 4.63e-16 78.2
MS.gene53859.t1 AT1G47490 30.065 153 93 2 13 151 129 281 1.22e-15 77.8
MS.gene53859.t1 AT1G49600 27.136 199 125 3 3 181 135 333 1.25e-15 77.8
MS.gene53859.t1 AT1G49600 27.136 199 125 3 3 181 135 333 1.25e-15 77.8
MS.gene53859.t1 AT2G36660 31.847 157 91 4 2 147 39 190 1.71e-15 77.8
MS.gene53859.t1 AT2G36660 32.692 156 92 4 2 147 127 279 1.01e-14 75.5
MS.gene53859.t1 AT2G36660 28.161 174 98 4 1 150 215 385 1.25e-11 65.9
MS.gene53859.t1 AT3G16380 27.895 190 121 4 3 179 37 223 1.71e-14 74.7
MS.gene53859.t1 AT3G16380 30.061 163 98 4 2 152 127 285 8.52e-14 72.4
MS.gene53859.t1 AT4G27000 28.859 149 91 2 3 137 96 243 3.17e-14 73.6
MS.gene53859.t1 AT1G34140 37.736 106 56 3 45 142 1 104 6.76e-14 72.4
MS.gene53859.t1 AT1G34140 29.240 171 93 4 3 148 135 302 7.97e-12 66.2
MS.gene53859.t1 AT1G47500 28.758 153 95 1 13 151 131 283 1.14e-13 72.0
MS.gene53859.t1 AT3G52150 29.697 165 94 3 1 144 90 253 1.16e-13 70.5
MS.gene53859.t1 AT3G52150 29.697 165 94 3 1 144 90 253 1.16e-13 70.5
MS.gene53859.t1 AT1G11650 26.289 194 126 3 2 181 77 267 1.23e-13 70.9
MS.gene53859.t1 AT1G11650 26.289 194 126 3 2 181 77 267 2.20e-13 70.9
MS.gene53859.t1 AT5G47320 46.053 76 40 1 69 144 33 107 3.07e-13 68.2
MS.gene53859.t1 AT1G47500 28.472 144 89 1 12 141 130 273 5.07e-13 69.3
MS.gene53859.t1 AT1G18630 41.333 75 43 1 67 141 36 109 7.09e-13 65.9
MS.gene53859.t1 AT5G61030 41.026 78 45 1 67 144 40 116 8.46e-13 68.6
MS.gene53859.t1 AT5G61030 41.026 78 45 1 67 144 40 116 8.46e-13 68.6
MS.gene53859.t1 AT3G23830 37.349 83 51 1 67 149 35 116 9.14e-13 65.1
MS.gene53859.t1 AT3G23830 37.349 83 51 1 67 149 35 116 9.14e-13 65.1
MS.gene53859.t1 AT1G60000 31.250 144 86 2 16 147 114 256 1.19e-12 67.4
MS.gene53859.t1 AT4G13860 36.986 73 45 1 69 141 5 76 1.42e-12 63.2
MS.gene53859.t1 AT4G00830 30.769 130 89 1 1 129 130 259 2.05e-12 68.2
MS.gene53859.t1 AT4G00830 30.769 130 89 1 1 129 130 259 2.05e-12 68.2
MS.gene53859.t1 AT4G00830 30.769 130 89 1 1 129 130 259 2.05e-12 68.2
MS.gene53859.t1 AT3G13224 27.097 155 98 4 2 144 34 185 4.11e-12 67.0
MS.gene53859.t1 AT4G39260 40.244 82 48 1 70 151 9 89 5.86e-12 61.6
MS.gene53859.t1 AT3G13224 28.000 150 93 4 7 144 30 176 8.94e-12 65.9
MS.gene53859.t1 AT2G21660 42.105 76 43 1 69 144 10 84 1.11e-11 62.8
MS.gene53859.t1 AT3G08000 41.250 80 46 1 68 147 42 120 1.24e-11 62.4
MS.gene53859.t1 AT2G21660 42.105 76 43 1 69 144 10 84 1.53e-11 62.8
MS.gene53859.t1 AT5G40490 29.054 148 92 3 7 144 62 206 2.26e-11 64.7
MS.gene53859.t1 AT1G60650 40.698 86 50 1 59 144 4 88 2.77e-11 63.9
MS.gene53859.t1 AT1G60650 40.698 86 50 1 59 144 4 88 2.77e-11 63.9
MS.gene53859.t1 AT4G13850 41.892 74 42 1 69 142 37 109 2.99e-11 61.2
MS.gene53859.t1 AT4G13850 41.892 74 42 1 69 142 37 109 3.26e-11 60.5
MS.gene53859.t1 AT5G40490 29.054 148 92 3 7 144 45 189 3.32e-11 64.3
MS.gene53859.t1 AT4G13850 41.892 74 42 1 69 142 37 109 3.60e-11 61.2
MS.gene53859.t1 AT5G04280 39.583 96 55 2 67 160 7 101 3.62e-11 63.5
MS.gene53859.t1 AT4G13850 41.892 74 42 1 69 142 37 109 3.98e-11 61.2
MS.gene53859.t1 AT5G51300 38.272 81 49 1 66 146 479 558 5.84e-11 63.9
MS.gene53859.t1 AT5G51300 38.272 81 49 1 66 146 479 558 5.84e-11 63.9
MS.gene53859.t1 AT5G51300 38.272 81 49 1 66 146 479 558 5.84e-11 63.9
MS.gene53859.t1 AT4G39260 42.667 75 42 1 70 144 9 82 6.06e-11 59.7

Find 125 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAACATGATTAAACTTTA+TGG 0.078843 3.2:-60639301 MS.gene53859:CDS
AATCATGTTAAGTACTTTAA+TGG 0.175680 3.2:+60639312 None:intergenic
CGTACCTTATTTACACGAAT+TGG 0.274565 3.2:+60639274 None:intergenic
GGGCTTGTGGAGGTGGTGCT+TGG 0.305347 3.2:+60634627 None:intergenic
TATGATACTTTCAGTGCATT+TGG 0.313727 3.2:-60638169 MS.gene53859:CDS
GGCATTCCCTGTTGCATCAT+TGG 0.313890 3.2:+60634536 None:intergenic
CCTCCTCGTCCCTTCGCTAA+TGG 0.318195 3.2:-60634677 MS.gene53859:CDS
ACCGCCACCACCTCAGCAAC+AGG 0.320888 3.2:-60634378 MS.gene53859:CDS
AAAACCAATTCGTGTAAATA+AGG 0.327127 3.2:-60639278 MS.gene53859:intron
CTTTGATGCAGAAAGAGTTT+TGG 0.329475 3.2:-60634810 MS.gene53859:intron
AAGGCTGGGGCTTGTGGAGG+TGG 0.338842 3.2:+60634620 None:intergenic
ACGGGGAATTCCCGAGGCTT+TGG 0.354696 3.2:-60635659 MS.gene53859:CDS
CCCAATGCTCCTCAGGCTAA+TGG 0.378234 3.2:-60634719 MS.gene53859:CDS
ATCTGCATAGGCTGAAAGGC+TGG 0.388244 3.2:+60634605 None:intergenic
TGATGCCATGCTTGTTGTCC+AGG 0.388722 3.2:+60634575 None:intergenic
CATGGAATGCGACCACCTTC+AGG 0.398473 3.2:-60634296 MS.gene53859:CDS
CTCCTCCAATGCAACAGTTC+AGG 0.400489 3.2:-60634514 MS.gene53859:CDS
TATATTTCACAGGCAATGAA+TGG 0.413192 3.2:-60635010 MS.gene53859:intron
AGGTCAACCAATGATGCAAC+AGG 0.414213 3.2:-60634543 MS.gene53859:CDS
ACTAACCAACATCAAGGTTA+TGG 0.419921 3.2:-60639452 MS.gene53859:CDS
GGCTGAAAGGCTGGGGCTTG+TGG 0.424335 3.2:+60634614 None:intergenic
TGGCAGGCCAGCAACAAGTT+TGG 0.425413 3.2:-60634406 MS.gene53859:CDS
GCAACAGGGTGGACATCCTA+TGG 0.429748 3.2:-60634363 MS.gene53859:CDS
GTGGTCGCCAAACTTGTTGC+TGG 0.432090 3.2:+60634399 None:intergenic
TGGTGATTGGGAGGTGGCGG+TGG 0.436450 3.2:+60634317 None:intergenic
ATCACTTCCCAATGCTCCTC+AGG 0.437077 3.2:-60634726 MS.gene53859:CDS
TGATTGGGAGGTGGCGGTGG+CGG 0.438299 3.2:+60634320 None:intergenic
ACCATTAGCCTGAGGAGCAT+TGG 0.438618 3.2:+60634718 None:intergenic
CCATTAGCCTGAGGAGCATT+GGG 0.440634 3.2:+60634719 None:intergenic
TCTGCATAGGCTGAAAGGCT+GGG 0.442687 3.2:+60634606 None:intergenic
TGGTTAGTGACTCTATCCTT+TGG 0.452975 3.2:+60639467 None:intergenic
GGTCGCATTCCATGGTGATT+GGG 0.457211 3.2:+60634305 None:intergenic
GATGGCGGTGGAAGAGGCCT+TGG 0.458690 3.2:+60634434 None:intergenic
CATTAGCTACGATTCATTTG+AGG 0.458779 3.2:-60635633 MS.gene53859:CDS
CCTTGTGGAGGTGGTGGTGG+CGG 0.460851 3.2:+60634470 None:intergenic
TGGTCGCATTCCATGGTGAT+TGG 0.461674 3.2:+60634304 None:intergenic
CCCTGCATACCTTGTGGAGG+TGG 0.465139 3.2:+60634461 None:intergenic
ACCACCTCCACAAGGTATGC+AGG 0.469991 3.2:-60634462 MS.gene53859:CDS
CCTCGGGAATTCCCCGTGTC+AGG 0.470185 3.2:+60635665 None:intergenic
CCCTGTTGCTGAGGTGGTGG+CGG 0.474128 3.2:+60634377 None:intergenic
GGCATCTGATTCAGCTATTG+AGG 0.474981 3.2:-60635612 MS.gene53859:intron
GGACGAGGAGGCACTGGAGC+AGG 0.476951 3.2:+60634689 None:intergenic
GATTTCTGAGGAATTATTGT+GGG 0.477901 3.2:-60639630 None:intergenic
ATTACTGATGGCGGTGGAAG+AGG 0.478441 3.2:+60634428 None:intergenic
GGCGGTGGAAGAGGCCTTGG+AGG 0.479734 3.2:+60634437 None:intergenic
GCGAAGGGACGAGGAGGCAC+TGG 0.483309 3.2:+60634683 None:intergenic
TGAAAGGCTGGGGCTTGTGG+AGG 0.486510 3.2:+60634617 None:intergenic
GCTAATGAAGCCAAAGCCTC+GGG 0.488907 3.2:+60635649 None:intergenic
ATACCTTGTGGAGGTGGTGG+TGG 0.492602 3.2:+60634467 None:intergenic
AGCTAATGAAGCCAAAGCCT+CGG 0.493845 3.2:+60635648 None:intergenic
CCACTTGCAAATAAAGTATG+AGG 0.496759 3.2:+60634755 None:intergenic
CTCATACTTTATTTGCAAGT+GGG 0.498139 3.2:-60634754 MS.gene53859:CDS
ATCCGACGGCACAGAAGAGC+AGG 0.500118 3.2:-60634778 MS.gene53859:CDS
TGCATACCTTGTGGAGGTGG+TGG 0.500126 3.2:+60634464 None:intergenic
GATCGAGATTGCCAATGAAA+AGG 0.501665 3.2:+60638318 None:intergenic
TGCTGGCCTGCCATTACTGA+TGG 0.509030 3.2:+60634416 None:intergenic
GGCCTGAACTGTTGCATTGG+AGG 0.509235 3.2:+60634512 None:intergenic
CAAATCCATAACCTTGATGT+TGG 0.512061 3.2:+60639447 None:intergenic
CCACCCTGTTGCTGAGGTGG+TGG 0.514943 3.2:+60634374 None:intergenic
CTGAAGGTGGTCGCATTCCA+TGG 0.515975 3.2:+60634297 None:intergenic
TGTTGCTGAGGTGGTGGCGG+TGG 0.518483 3.2:+60634380 None:intergenic
CCATGGTGATTGGGAGGTGG+CGG 0.521707 3.2:+60634314 None:intergenic
GGCCTGCTCTTCTGTGCCGT+CGG 0.524951 3.2:+60634776 None:intergenic
CTGCATAGGCTGAAAGGCTG+GGG 0.529288 3.2:+60634607 None:intergenic
TCTTCCACCGCCATCAGTAA+TGG 0.541184 3.2:-60634426 MS.gene53859:CDS
CATGCTTGTTGTCCAGGTGG+TGG 0.541661 3.2:+60634581 None:intergenic
TGTCCACCCTGTTGCTGAGG+TGG 0.544366 3.2:+60634371 None:intergenic
CCAGGTGGTGGCATCTGCAT+AGG 0.550600 3.2:+60634593 None:intergenic
GGTGGCCTGAACTGTTGCAT+TGG 0.552424 3.2:+60634509 None:intergenic
CCTCATACTTTATTTGCAAG+TGG 0.556720 3.2:-60634755 MS.gene53859:CDS
GGTGCTTGGATGACATGAAT+AGG 0.557724 3.2:+60634641 None:intergenic
ATTCCATGGTGATTGGGAGG+TGG 0.561770 3.2:+60634311 None:intergenic
CCTATGCAGATGCCACCACC+TGG 0.561851 3.2:-60634593 MS.gene53859:CDS
CCTGCCATTACTGATGGCGG+TGG 0.562239 3.2:+60634422 None:intergenic
AGTTAATGTGTATGTTCCAA+AGG 0.563847 3.2:-60639483 MS.gene53859:CDS
AGGAGGCACTGGAGCAGGAA+TGG 0.569115 3.2:+60634694 None:intergenic
CTTGGATGACATGAATAGGT+GGG 0.570640 3.2:+60634645 None:intergenic
CCACCGCCATCAGTAATGGC+AGG 0.573403 3.2:-60634422 MS.gene53859:CDS
TGGCATCTGCATAGGCTGAA+AGG 0.575799 3.2:+60634601 None:intergenic
TTTGTTCAAGCTGGTCCCGT+AGG 0.577036 3.2:-60639602 MS.gene53859:intron
TGGATGACATGAATAGGTGG+GGG 0.578000 3.2:+60634647 None:intergenic
CGCATTCCATGGTGATTGGG+AGG 0.578545 3.2:+60634308 None:intergenic
GAAAGGCACGGTACTCCCGC+AGG 0.580133 3.2:-60634926 MS.gene53859:intron
GGAGGTCCCTGCATACCTTG+TGG 0.588381 3.2:+60634455 None:intergenic
AGTTATTGTTACTAATCCCA+AGG 0.590673 3.2:-60638146 MS.gene53859:intron
AGATTTCTGAGGAATTATTG+TGG 0.592253 3.2:-60639631 None:intergenic
CACCACCTGGACAACAAGCA+TGG 0.592733 3.2:-60634580 MS.gene53859:CDS
ATCATGAGAGATCCTGACAC+GGG 0.594230 3.2:-60635677 MS.gene53859:CDS
GCTTATAAGAAAGACACTAA+AGG 0.594299 3.2:-60634950 MS.gene53859:CDS
ACACCATTAGCGAAGGGACG+AGG 0.595904 3.2:+60634674 None:intergenic
CTGAACTGTTGCATTGGAGG+AGG 0.600673 3.2:+60634515 None:intergenic
GGCATCTGCATCGAGTGAGG+TGG 0.603326 3.2:+60634491 None:intergenic
AGAGTCACTAACCAACATCA+AGG 0.611363 3.2:-60639458 MS.gene53859:CDS
GCTTGGATGACATGAATAGG+TGG 0.613143 3.2:+60634644 None:intergenic
CAACAGGGTGGACATCCTAT+GGG 0.613195 3.2:-60634362 MS.gene53859:CDS
GGATGTCCACCCTGTTGCTG+AGG 0.614734 3.2:+60634368 None:intergenic
CCACCTCCACAAGGTATGCA+GGG 0.617309 3.2:-60634461 MS.gene53859:CDS
GAGTTCTGAGGATATCCCAT+AGG 0.620525 3.2:+60634347 None:intergenic
TTTGGCTGCAAGTAATCCGA+CGG 0.623150 3.2:-60634792 MS.gene53859:CDS
GGGGCGACACCATTAGCGAA+GGG 0.625184 3.2:+60634668 None:intergenic
AGAAAGACACTAAAGGCGAA+AGG 0.629953 3.2:-60634943 MS.gene53859:CDS
AAGGTATGCAGGGACCTCCA+AGG 0.630862 3.2:-60634451 MS.gene53859:CDS
GACACTAAAGGCGAAAGGCA+CGG 0.632453 3.2:-60634938 MS.gene53859:CDS
CCGCCACCTCCCAATCACCA+TGG 0.634445 3.2:-60634314 MS.gene53859:CDS
TGGCCTGCCATTACTGATGG+CGG 0.636967 3.2:+60634419 None:intergenic
TGAGGAGCATTGGGAAGTGA+TGG 0.637341 3.2:+60634728 None:intergenic
CCGCCACCACCACCTCCACA+AGG 0.638850 3.2:-60634470 MS.gene53859:CDS
GGCGGCATCTGCATCGAGTG+AGG 0.639076 3.2:+60634488 None:intergenic
TGCCATGCTTGTTGTCCAGG+TGG 0.646954 3.2:+60634578 None:intergenic
CCGCCACCACCTCAGCAACA+GGG 0.651943 3.2:-60634377 MS.gene53859:CDS
GATGACATGAATAGGTGGGG+GGG 0.655509 3.2:+60634649 None:intergenic
GGAGCATTGGGAAGTGATGG+TGG 0.660540 3.2:+60634731 None:intergenic
TTGGATGACATGAATAGGTG+GGG 0.660560 3.2:+60634646 None:intergenic
GGTCCCTGCATACCTTGTGG+AGG 0.663410 3.2:+60634458 None:intergenic
GGATGACATGAATAGGTGGG+GGG 0.666234 3.2:+60634648 None:intergenic
GGTGGCGGCATTGAGTTCTG+AGG 0.667012 3.2:+60634335 None:intergenic
CCTGACACGGGGAATTCCCG+AGG 0.675371 3.2:-60635665 MS.gene53859:CDS
AATCAGCATCTTCTTCGCTG+CGG 0.690362 3.2:+60639417 None:intergenic
CCACCACCTCAGCAACAGGG+TGG 0.690883 3.2:-60634374 MS.gene53859:CDS
GATCATGAGAGATCCTGACA+CGG 0.697605 3.2:-60635678 MS.gene53859:CDS
GCATGGCATCAACAACAGCA+AGG 0.700707 3.2:-60634563 MS.gene53859:CDS
CCATTAGCGAAGGGACGAGG+AGG 0.713273 3.2:+60634677 None:intergenic
GGTCAACCAATGATGCAACA+GGG 0.715506 3.2:-60634542 MS.gene53859:CDS
TCATGAGAGATCCTGACACG+GGG 0.723158 3.2:-60635676 MS.gene53859:CDS
GGAATGGTACCATTAGCCTG+AGG 0.738123 3.2:+60634710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTTATCATTATTTGT+AGG + chr3.2:60637533-60637552 None:intergenic 10.0%
!! TATTATATTAGTATAATACT+TGG + chr3.2:60635322-60635341 None:intergenic 10.0%
!! TTATATATTTGATACTTAAA+TGG + chr3.2:60636375-60636394 None:intergenic 10.0%
!!! TTTTTAACAATTAATTAATG+AGG + chr3.2:60637456-60637475 None:intergenic 10.0%
!! AAATGAAAAACTTTCATATT+TGG + chr3.2:60635630-60635649 None:intergenic 15.0%
!! AATGAATTTAAATTAACTGA+TGG + chr3.2:60637212-60637231 None:intergenic 15.0%
!! ACCATAAAAAAAAAAAAAAG+TGG + chr3.2:60639027-60639046 None:intergenic 15.0%
!! ATACAGAATTTAAATAACAT+AGG - chr3.2:60635972-60635991 MS.gene53859:intron 15.0%
!! TTAAATCATAGAAAATAATG+AGG - chr3.2:60636515-60636534 MS.gene53859:intron 15.0%
!!! AAATTTTAAACTTCATCAAT+CGG - chr3.2:60637607-60637626 MS.gene53859:intron 15.0%
!!! AATTAGGTTTTATGTTAATT+TGG + chr3.2:60634563-60634582 None:intergenic 15.0%
!!! AGATAATTTTGTATTAAAGA+AGG - chr3.2:60637166-60637185 MS.gene53859:intron 15.0%
!! AAAAACAGAAATGAAAACTA+GGG + chr3.2:60635047-60635066 None:intergenic 20.0%
!! AAAAGATGATTACAAACTAA+CGG + chr3.2:60636772-60636791 None:intergenic 20.0%
!! AAACTCCAATTCAATATAAA+CGG + chr3.2:60636969-60636988 None:intergenic 20.0%
!! AACAATTAATTAATGAGGAA+AGG + chr3.2:60637451-60637470 None:intergenic 20.0%
!! AAGACTTGTAAGTATAAATT+AGG - chr3.2:60636339-60636358 MS.gene53859:intron 20.0%
!! AAGTCAAATATAAACTTGAA+GGG + chr3.2:60638564-60638583 None:intergenic 20.0%
!! AATATTCCATATTAGATGTA+AGG - chr3.2:60638777-60638796 MS.gene53859:intron 20.0%
!! AATCATGTTAAGTACTTTAA+TGG + chr3.2:60634603-60634622 None:intergenic 20.0%
!! AATGATATACAATAAGGATT+GGG + chr3.2:60635360-60635379 None:intergenic 20.0%
!! AATTCGAATGATATACAATA+AGG + chr3.2:60635366-60635385 None:intergenic 20.0%
!! ACAAAATTATCTAAACTACA+AGG + chr3.2:60637158-60637177 None:intergenic 20.0%
!! ACATATACATGAACATAAAT+GGG + chr3.2:60638081-60638100 None:intergenic 20.0%
!! ACTTCAAACTTTACAAATTT+GGG + chr3.2:60637569-60637588 None:intergenic 20.0%
!! ATGCTTAATTCATAATTAGA+AGG - chr3.2:60638841-60638860 MS.gene53859:intron 20.0%
!! ATGTGATATAGTATCATATA+TGG + chr3.2:60637493-60637512 None:intergenic 20.0%
!! CTTAACATGATTAAACTTTA+TGG - chr3.2:60634611-60634630 MS.gene53859:CDS 20.0%
!! CTTCAATCACAAAATATTAA+TGG + chr3.2:60635919-60635938 None:intergenic 20.0%
!! GTTGGAAAAATAAATATTAG+CGG + chr3.2:60637245-60637264 None:intergenic 20.0%
!! TAAATAGATTAAAATGTGCT+GGG - chr3.2:60635655-60635674 MS.gene53859:CDS 20.0%
!! TACTTCAAACTTTACAAATT+TGG + chr3.2:60637570-60637589 None:intergenic 20.0%
!! TATATTAGTATAATACTTGG+TGG + chr3.2:60635319-60635338 None:intergenic 20.0%
!! TGTAATAAATAGTATTAGTG+AGG - chr3.2:60637043-60637062 MS.gene53859:intron 20.0%
!! TTAAATAGATTAAAATGTGC+TGG - chr3.2:60635654-60635673 MS.gene53859:CDS 20.0%
!! TTAAGATGTTTATCCAATTA+GGG - chr3.2:60634759-60634778 MS.gene53859:CDS 20.0%
!! TTCTACAAATATCTAAGTTA+CGG - chr3.2:60636808-60636827 MS.gene53859:intron 20.0%
!!! AAATTTAGAGATTCTAAGAT+GGG - chr3.2:60635188-60635207 MS.gene53859:intron 20.0%
!!! AATTTGTAAAGTTTGAAGTA+AGG - chr3.2:60637570-60637589 MS.gene53859:intron 20.0%
!!! AATTTTAAACTTCATCAATC+GGG - chr3.2:60637608-60637627 MS.gene53859:intron 20.0%
!!! ACTTTCATTCTTTTGTTATT+CGG - chr3.2:60638372-60638391 MS.gene53859:intron 20.0%
!!! ATACATCTTTTCTTGAAAAA+GGG - chr3.2:60636843-60636862 MS.gene53859:intron 20.0%
!!! ATGTTTTACTATGTTAATAC+AGG + chr3.2:60638524-60638543 None:intergenic 20.0%
!!! CTTTATTTTGTTGTTAATAG+TGG - chr3.2:60637105-60637124 MS.gene53859:intron 20.0%
!!! GAATTATTTCTATATTTCAC+AGG - chr3.2:60638892-60638911 MS.gene53859:intron 20.0%
!!! GCCACTTTTTTTTTTTTTTA+TGG - chr3.2:60639023-60639042 MS.gene53859:intron 20.0%
!!! GTATTTTAGAAAAAACAGTA+AGG + chr3.2:60636459-60636478 None:intergenic 20.0%
!!! TAAATTTAGAGATTCTAAGA+TGG - chr3.2:60635187-60635206 MS.gene53859:intron 20.0%
!!! TATACATCTTTTCTTGAAAA+AGG - chr3.2:60636842-60636861 MS.gene53859:intron 20.0%
!!! TCTCTTATTCATTTAGTTTA+GGG - chr3.2:60634356-60634375 MS.gene53859:CDS 20.0%
!!! TGTTTTACTATGTTAATACA+GGG + chr3.2:60638523-60638542 None:intergenic 20.0%
!!! TTGATAACAAACAAAATAGA+TGG - chr3.2:60638441-60638460 MS.gene53859:intron 20.0%
! AAAAAAAAAAGTGGCAAGAA+AGG + chr3.2:60639018-60639037 None:intergenic 25.0%
! AAAAAAAAAGTGGCAAGAAA+GGG + chr3.2:60639017-60639036 None:intergenic 25.0%
! AAAACCAATTCGTGTAAATA+AGG - chr3.2:60634634-60634653 MS.gene53859:CDS 25.0%
! AAAATTAACTCCATTCAAAG+GGG + chr3.2:60634813-60634832 None:intergenic 25.0%
! AAATTAGAAGAGTAAAACCT+TGG + chr3.2:60635786-60635805 None:intergenic 25.0%
! AACTCCAATTCAATATAAAC+GGG + chr3.2:60636968-60636987 None:intergenic 25.0%
! AAGTATAAATTAGGTAGTCT+CGG - chr3.2:60636348-60636367 MS.gene53859:intron 25.0%
! AATTAGAAGAGTAAAACCTT+GGG + chr3.2:60635785-60635804 None:intergenic 25.0%
! AATTATTCCGAACCTAAAAT+TGG - chr3.2:60636043-60636062 MS.gene53859:intron 25.0%
! ACAAAATTAACTCCATTCAA+AGG + chr3.2:60634815-60634834 None:intergenic 25.0%
! ACAATTGAATATTTCGTTTC+TGG + chr3.2:60636607-60636626 None:intergenic 25.0%
! AGAACTAAATATCAAGACTT+TGG - chr3.2:60636085-60636104 MS.gene53859:intron 25.0%
! ATACAGAATTTCCATGATAT+AGG - chr3.2:60636475-60636494 MS.gene53859:intron 25.0%
! ATGATGTAAAATAGTGTGTA+TGG + chr3.2:60635894-60635913 None:intergenic 25.0%
! ATGATTAGATAGTAGATACA+AGG + chr3.2:60638479-60638498 None:intergenic 25.0%
! CAAAATTAACTCCATTCAAA+GGG + chr3.2:60634814-60634833 None:intergenic 25.0%
! CACATATACATGAACATAAA+TGG + chr3.2:60638082-60638101 None:intergenic 25.0%
! CTTAAGATGTTTATCCAATT+AGG - chr3.2:60634758-60634777 MS.gene53859:CDS 25.0%
! GAAAAACAGAAATGAAAACT+AGG + chr3.2:60635048-60635067 None:intergenic 25.0%
! GAAACATCAATTAGAAAAGT+AGG - chr3.2:60638734-60638753 MS.gene53859:intron 25.0%
! GAAGTCAAATATAAACTTGA+AGG + chr3.2:60638565-60638584 None:intergenic 25.0%
! GAATGATATACAATAAGGAT+TGG + chr3.2:60635361-60635380 None:intergenic 25.0%
! GAGTTAACAATCATACAATT+GGG - chr3.2:60636557-60636576 MS.gene53859:intron 25.0%
! GTTATCATTTAGATAGAAGT+TGG - chr3.2:60634915-60634934 MS.gene53859:intron 25.0%
! TAACAAACAAAATAGATGGA+TGG - chr3.2:60638445-60638464 MS.gene53859:intron 25.0%
! TAGTCGATATTAATCATTCT+TGG - chr3.2:60636241-60636260 MS.gene53859:intron 25.0%
! TATCTAATCATAGACTCTTT+CGG - chr3.2:60638488-60638507 MS.gene53859:intron 25.0%
! TCTACAAATATCTAAGTTAC+GGG - chr3.2:60636809-60636828 MS.gene53859:intron 25.0%
! TTATACTTACAAGTCTTCAA+GGG + chr3.2:60636336-60636355 None:intergenic 25.0%
! TTCATAGTAGCTAACAAATA+TGG - chr3.2:60637328-60637347 MS.gene53859:intron 25.0%
! TTTATACTTACAAGTCTTCA+AGG + chr3.2:60636337-60636356 None:intergenic 25.0%
!! AAGAATATGAACAACAGTTT+TGG + chr3.2:60634786-60634805 None:intergenic 25.0%
!! AGAATATGAACAACAGTTTT+GGG + chr3.2:60634785-60634804 None:intergenic 25.0%
!! ATACACACTATTTTACATCA+TGG - chr3.2:60635893-60635912 MS.gene53859:intron 25.0%
!! ATTTGAAATTGGGAAAAATG+TGG - chr3.2:60638687-60638706 MS.gene53859:intron 25.0%
!! ATTTGGTAGCAAATAATAAG+CGG + chr3.2:60634546-60634565 None:intergenic 25.0%
!! CAAAAAAGGGATTTGAAATT+GGG - chr3.2:60638677-60638696 MS.gene53859:intron 25.0%
!! CTCTCTTATTCATTTAGTTT+AGG - chr3.2:60634355-60634374 MS.gene53859:CDS 25.0%
!! GTATTGATCTACTATTTCTT+TGG - chr3.2:60635528-60635547 MS.gene53859:intron 25.0%
!!! AGGAAACCATCAATTTTTTA+AGG - chr3.2:60636925-60636944 MS.gene53859:intron 25.0%
!!! CAAACAGAAGCATTAAATTA+GGG - chr3.2:60638812-60638831 MS.gene53859:intron 25.0%
!!! CTAAAATTACTTTTCCAGTT+TGG + chr3.2:60637296-60637315 None:intergenic 25.0%
!!! TCAAACAGAAGCATTAAATT+AGG - chr3.2:60638811-60638830 MS.gene53859:intron 25.0%
!!! TCTACTATTTCTTTGGTTTT+AGG - chr3.2:60635535-60635554 MS.gene53859:intron 25.0%
AAAAAAAAGTGGCAAGAAAG+GGG + chr3.2:60639016-60639035 None:intergenic 30.0%
AAAATTTAACCCTCAATGGA+TGG + chr3.2:60638165-60638184 None:intergenic 30.0%
AAATAAATATTAGCGGTGAG+TGG + chr3.2:60637238-60637257 None:intergenic 30.0%
AAATATACAACAGAATGCAG+TGG + chr3.2:60634839-60634858 None:intergenic 30.0%
AACAAAATAGATGGATGGAT+AGG - chr3.2:60638450-60638469 MS.gene53859:intron 30.0%
AATAAATATTAGCGGTGAGT+GGG + chr3.2:60637237-60637256 None:intergenic 30.0%
AATTATAGATGTGTTACCCA+AGG + chr3.2:60637920-60637939 None:intergenic 30.0%
ACTTAACCTAAACTAACTTG+TGG + chr3.2:60637975-60637994 None:intergenic 30.0%
AGCTCGGTAAATATTGTATT+GGG + chr3.2:60636154-60636173 None:intergenic 30.0%
AGGTTAAGTACTTTATCTGA+TGG - chr3.2:60637986-60638005 MS.gene53859:intron 30.0%
AGTATAAATTAGGTAGTCTC+GGG - chr3.2:60636349-60636368 MS.gene53859:intron 30.0%
AGTTAATGTGTATGTTCCAA+AGG - chr3.2:60634429-60634448 MS.gene53859:CDS 30.0%
AGTTATTGTTACTAATCCCA+AGG - chr3.2:60635766-60635785 MS.gene53859:intron 30.0%
ATAAACGGGTACACATTTAT+TGG + chr3.2:60636954-60636973 None:intergenic 30.0%
ATAATTCATTATCAGTGACG+AGG + chr3.2:60638879-60638898 None:intergenic 30.0%
ATATCTAAGTTACGGGTTTA+AGG - chr3.2:60636816-60636835 MS.gene53859:intron 30.0%
ATCTAATCATAGACTCTTTC+GGG - chr3.2:60638489-60638508 MS.gene53859:intron 30.0%
ATGAAACAAACAACACTATC+AGG + chr3.2:60635820-60635839 None:intergenic 30.0%
ATGAATTCATGCTGCAAAAA+AGG - chr3.2:60638663-60638682 MS.gene53859:intron 30.0%
ATTATGAAGGATAAGGGAAA+GGG - chr3.2:60637014-60637033 MS.gene53859:intron 30.0%
CAAGCAGAAAACTAATAACT+CGG + chr3.2:60634961-60634980 None:intergenic 30.0%
CGAGTTAACAATCATACAAT+TGG - chr3.2:60636556-60636575 MS.gene53859:intron 30.0%
CTCTACATGTTTGTTTGAAA+AGG - chr3.2:60637794-60637813 MS.gene53859:intron 30.0%
GACAAAATATACGTATCCTT+GGG - chr3.2:60637901-60637920 MS.gene53859:intron 30.0%
GCATATAAAGCCTAAAAATG+TGG + chr3.2:60637863-60637882 None:intergenic 30.0%
GCTTATAAGAAAGACACTAA+AGG - chr3.2:60638962-60638981 MS.gene53859:intron 30.0%
TAAATCGCCGTTAGTTATTA+GGG - chr3.2:60636704-60636723 MS.gene53859:intron 30.0%
TAACAATCATACAATTGGGA+GGG - chr3.2:60636561-60636580 MS.gene53859:intron 30.0%
TAAGTACTTTATCTGATGGA+TGG - chr3.2:60637990-60638009 MS.gene53859:intron 30.0%
TAATTCATTATCAGTGACGA+GGG + chr3.2:60638878-60638897 None:intergenic 30.0%
TAGCTCGGTAAATATTGTAT+TGG + chr3.2:60636155-60636174 None:intergenic 30.0%
TATATTTCACAGGCAATGAA+TGG - chr3.2:60638902-60638921 MS.gene53859:intron 30.0%
TATCAAGACTTTGGATTATC+TGG - chr3.2:60636094-60636113 MS.gene53859:intron 30.0%
TATCTAAACTACAAGGAAGT+TGG + chr3.2:60637151-60637170 None:intergenic 30.0%
TATCTTAATACCACGTAGAA+TGG - chr3.2:60635250-60635269 MS.gene53859:intron 30.0%
TATGATACTTTCAGTGCATT+TGG - chr3.2:60635743-60635762 MS.gene53859:intron 30.0%
TATTCTCAGAAAACCAACAA+GGG + chr3.2:60635955-60635974 None:intergenic 30.0%
TCTACTCCTTACATCTAATA+TGG + chr3.2:60638786-60638805 None:intergenic 30.0%
TCTTTAGTAAACCTTGTTCT+CGG - chr3.2:60636432-60636451 MS.gene53859:intron 30.0%
TGAATTCATGCTGCAAAAAA+GGG - chr3.2:60638664-60638683 MS.gene53859:intron 30.0%
TGACAAAATATACGTATCCT+TGG - chr3.2:60637900-60637919 MS.gene53859:intron 30.0%
TGTACCCGTTTATATTGAAT+TGG - chr3.2:60636961-60636980 MS.gene53859:intron 30.0%
TTAACAATCATACAATTGGG+AGG - chr3.2:60636560-60636579 MS.gene53859:intron 30.0%
! AAGTACTTTATCTGATGGAT+GGG - chr3.2:60637991-60638010 MS.gene53859:intron 30.0%
! AAGTTTGAAGTAAGGTTTCA+CGG - chr3.2:60637578-60637597 MS.gene53859:intron 30.0%
! AGCATGAATTCATTTGACTT+AGG + chr3.2:60638656-60638675 None:intergenic 30.0%
! ATCCAAGCTCTTTTTATCTT+GGG + chr3.2:60635564-60635583 None:intergenic 30.0%
! ATTGAATATTTCGTTTCTGG+CGG + chr3.2:60636604-60636623 None:intergenic 30.0%
! ATTGGTTGCAATAGTCATTT+TGG - chr3.2:60637367-60637386 MS.gene53859:intron 30.0%
! CTCATACTTTATTTGCAAGT+GGG - chr3.2:60639158-60639177 MS.gene53859:intron 30.0%
! GAATGATTAATATCGACTAC+CGG + chr3.2:60636240-60636259 None:intergenic 30.0%
! GAGGTGTTAAGTAATTAGTA+GGG - chr3.2:60637062-60637081 MS.gene53859:intron 30.0%
! GAGTACTTTTCCACATTTTT+AGG - chr3.2:60637850-60637869 MS.gene53859:intron 30.0%
! GCAAAAAAGGGATTTGAAAT+TGG - chr3.2:60638676-60638695 MS.gene53859:intron 30.0%
! GCATGAATTCATTTGACTTA+GGG + chr3.2:60638655-60638674 None:intergenic 30.0%
! TGAGGTGTTAAGTAATTAGT+AGG - chr3.2:60637061-60637080 MS.gene53859:intron 30.0%
! TGGTAGCCTTAAAAAATTGA+TGG + chr3.2:60636934-60636953 None:intergenic 30.0%
! TTTCATATTTGGTGACTTAC+AGG + chr3.2:60635619-60635638 None:intergenic 30.0%
!!! GAGTTATTAGTTTTCTGCTT+GGG - chr3.2:60634960-60634979 MS.gene53859:CDS 30.0%
!!! TGTCTCAGGTGTTTTTTAAT+GGG + chr3.2:60637949-60637968 None:intergenic 30.0%
AAACACTACAGCCTATATCA+TGG + chr3.2:60636489-60636508 None:intergenic 35.0%
AAGCTAACACCATAAGCAAT+AGG + chr3.2:60636735-60636754 None:intergenic 35.0%
AATAAGAGAGAAAGAGAGAG+AGG + chr3.2:60634345-60634364 None:intergenic 35.0%
ACAAAGACCAACTGTTAACA+TGG - chr3.2:60636635-60636654 MS.gene53859:intron 35.0%
ACACATTGAAGCTTACTCAT+AGG - chr3.2:60638406-60638425 MS.gene53859:intron 35.0%
ACTAACCAACATCAAGGTTA+TGG - chr3.2:60634460-60634479 MS.gene53859:CDS 35.0%
ACTGAACCTACTCTAATAGT+TGG - chr3.2:60635998-60636017 MS.gene53859:intron 35.0%
AGAACTTGGTCCACATAAAA+TGG + chr3.2:60635294-60635313 None:intergenic 35.0%
AGACCTGATTATGAAGGATA+AGG - chr3.2:60637007-60637026 MS.gene53859:intron 35.0%
AGATAGTACAGAAACAACGA+AGG + chr3.2:60639061-60639080 None:intergenic 35.0%
AGCTTATGATCTGATGTTCA+AGG - chr3.2:60638199-60638218 MS.gene53859:intron 35.0%
AGGTATAGTCTCATTGTTGT+TGG + chr3.2:60637263-60637282 None:intergenic 35.0%
ATAAAAAGAGCTTGGATGTC+GGG - chr3.2:60635567-60635586 MS.gene53859:intron 35.0%
ATAAATATTAGCGGTGAGTG+GGG + chr3.2:60637236-60637255 None:intergenic 35.0%
ATAACTAACGGCGATTTAGA+TGG + chr3.2:60636702-60636721 None:intergenic 35.0%
ATAAGAGAGAAAGAGAGAGA+GGG + chr3.2:60634344-60634363 None:intergenic 35.0%
ATCCCAAGATAAAAAGAGCT+TGG - chr3.2:60635559-60635578 MS.gene53859:intron 35.0%
ATTCTTGATTCCCCTTTGAA+TGG - chr3.2:60634800-60634819 MS.gene53859:CDS 35.0%
ATTTAGTCAGAAACCCTTGT+TGG - chr3.2:60635939-60635958 MS.gene53859:intron 35.0%
CAAAACTCTTTCTGCATCAA+AGG + chr3.2:60639104-60639123 None:intergenic 35.0%
CAAAGACCAACTGTTAACAT+GGG - chr3.2:60636636-60636655 MS.gene53859:intron 35.0%
CAAATCCATAACCTTGATGT+TGG + chr3.2:60634468-60634487 None:intergenic 35.0%
CATGTAGAGAAAAACATCAG+TGG + chr3.2:60637783-60637802 None:intergenic 35.0%
CATTAAAAAACACCTGAGAC+AGG - chr3.2:60637948-60637967 MS.gene53859:intron 35.0%
CCACTTGCAAATAAAGTATG+AGG + chr3.2:60639160-60639179 None:intergenic 35.0%
CGATATTAATCATTCTTGGC+TGG - chr3.2:60636245-60636264 MS.gene53859:intron 35.0%
CTAAATCGCCGTTAGTTATT+AGG - chr3.2:60636703-60636722 MS.gene53859:intron 35.0%
CTGCAACAAAACAAGCAATT+AGG + chr3.2:60634579-60634598 None:intergenic 35.0%
CTTCAAGGGAAATCATAAAG+TGG + chr3.2:60636322-60636341 None:intergenic 35.0%
GAAAACATTGTTGAGACCTA+GGG + chr3.2:60636289-60636308 None:intergenic 35.0%
GACCTGATTATGAAGGATAA+GGG - chr3.2:60637008-60637027 MS.gene53859:intron 35.0%
GATAAAAAGAGCTTGGATGT+CGG - chr3.2:60635566-60635585 MS.gene53859:intron 35.0%
GATGATTACAAACTAACGGA+CGG + chr3.2:60636768-60636787 None:intergenic 35.0%
GATTATGAAGGATAAGGGAA+AGG - chr3.2:60637013-60637032 MS.gene53859:intron 35.0%
GCGTAAAATTTAACCCTCAA+TGG + chr3.2:60638169-60638188 None:intergenic 35.0%
GCTCGGTAAATATTGTATTG+GGG + chr3.2:60636153-60636172 None:intergenic 35.0%
GGAATGACAGTTCTTGTATT+TGG - chr3.2:60635161-60635180 MS.gene53859:intron 35.0%
GGAATTTCAATCGTCTGAAT+TGG - chr3.2:60637349-60637368 MS.gene53859:intron 35.0%
GGAGGAAAAATGAAAGAATG+AGG - chr3.2:60636019-60636038 MS.gene53859:intron 35.0%
GTATTCTCAGAAAACCAACA+AGG + chr3.2:60635956-60635975 None:intergenic 35.0%
GTTAATGATGTCACGTCTTA+AGG + chr3.2:60637429-60637448 None:intergenic 35.0%
TAACTAACGGCGATTTAGAT+GGG + chr3.2:60636701-60636720 None:intergenic 35.0%
TATCTGGACACATTGTGAAA+TGG - chr3.2:60636110-60636129 MS.gene53859:intron 35.0%
TCGAGTGTTTCATGATTCTA+TGG - chr3.2:60638588-60638607 MS.gene53859:intron 35.0%
TGAAAACATTGTTGAGACCT+AGG + chr3.2:60636290-60636309 None:intergenic 35.0%
TGATAGAGACCTGATTATGA+AGG - chr3.2:60637001-60637020 MS.gene53859:intron 35.0%
TGATTTCCATTACCTTGTGT+TGG - chr3.2:60637394-60637413 MS.gene53859:intron 35.0%
TGTATGATTGTTAACTCGTG+TGG + chr3.2:60636554-60636573 None:intergenic 35.0%
TTCCCTTATCCTTCATAATC+AGG + chr3.2:60637013-60637032 None:intergenic 35.0%
TTGTAATCCCTAAGTGTATC+CGG + chr3.2:60637717-60637736 None:intergenic 35.0%
TTTCCTCCAACTATTAGAGT+AGG + chr3.2:60636007-60636026 None:intergenic 35.0%
! AATACTTGGTGGTTAGAACT+TGG + chr3.2:60635308-60635327 None:intergenic 35.0%
! ACTCTTAATGTTTCTGTTGC+AGG - chr3.2:60635700-60635719 MS.gene53859:intron 35.0%
! AGCATTAAATGTGACTAGCT+CGG + chr3.2:60636170-60636189 None:intergenic 35.0%
! AGTATTGAACCGATTCATGT+TGG - chr3.2:60635106-60635125 MS.gene53859:intron 35.0%
! ATGGGTTATACTATGTTGGA+CGG - chr3.2:60638009-60638028 MS.gene53859:intron 35.0%
! ATTGAATTGGAGTTTGCTCT+TGG - chr3.2:60636974-60636993 MS.gene53859:intron 35.0%
! CAGGAGAGTACATTGAAATT+AGG - chr3.2:60636905-60636924 MS.gene53859:intron 35.0%
! CATCCAAGCTCTTTTTATCT+TGG + chr3.2:60635565-60635584 None:intergenic 35.0%
! CCTCATACTTTATTTGCAAG+TGG - chr3.2:60639157-60639176 MS.gene53859:intron 35.0%
! CGTACCTTATTTACACGAAT+TGG + chr3.2:60634641-60634660 None:intergenic 35.0%
! CTTTGATGCAGAAAGAGTTT+TGG - chr3.2:60639102-60639121 MS.gene53859:intron 35.0%
! TCATTGCACACCATTTTATG+TGG - chr3.2:60635281-60635300 MS.gene53859:intron 35.0%
! TGATGGATCTTGACATAAGA+TGG + chr3.2:60637195-60637214 None:intergenic 35.0%
! TTAGTTCTCAGATAGCTAAC+AGG + chr3.2:60636073-60636092 None:intergenic 35.0%
! TTGAATTGGAGTTTGCTCTT+GGG - chr3.2:60636975-60636994 MS.gene53859:intron 35.0%
!! AAACTACAAGGAAGTTGGTA+AGG + chr3.2:60637146-60637165 None:intergenic 35.0%
!! ATGGATGGGTTATACTATGT+TGG - chr3.2:60638005-60638024 MS.gene53859:intron 35.0%
!! TTTTTCGGTCACTATTCTAC+TGG - chr3.2:60636398-60636417 MS.gene53859:intron 35.0%
!!! CGAGTTATTAGTTTTCTGCT+TGG - chr3.2:60634959-60634978 MS.gene53859:CDS 35.0%
!!! CTAATTGCTTGTTTTGTTGC+AGG - chr3.2:60634577-60634596 MS.gene53859:CDS 35.0%
!!! CTGTCTCAGGTGTTTTTTAA+TGG + chr3.2:60637950-60637969 None:intergenic 35.0%
!!! GTCTCAGGTGTTTTTTAATG+GGG + chr3.2:60637948-60637967 None:intergenic 35.0%
AAACTGCCAACACAAGGTAA+TGG + chr3.2:60637403-60637422 None:intergenic 40.0%
AACAGTCTCACAAGTAGGAA+TGG + chr3.2:60634669-60634688 None:intergenic 40.0%
ACCTCATTCAGAAACCAAAC+TGG - chr3.2:60637279-60637298 MS.gene53859:intron 40.0%
ACTGTTAACATGGGTCACAA+TGG - chr3.2:60636645-60636664 MS.gene53859:intron 40.0%
AGAAAGACACTAAAGGCGAA+AGG - chr3.2:60638969-60638988 MS.gene53859:intron 40.0%
AGAGTCACTAACCAACATCA+AGG - chr3.2:60634454-60634473 MS.gene53859:CDS 40.0%
AGCAAATAATAAGCGGAGCA+AGG + chr3.2:60634539-60634558 None:intergenic 40.0%
AGGTTCAGTCTAGTATCAAG+CGG - chr3.2:60637814-60637833 MS.gene53859:intron 40.0%
ATTAACCCTCCATCCATTGA+GGG - chr3.2:60638153-60638172 MS.gene53859:CDS 40.0%
ATTTAACCCTCAATGGATGG+AGG + chr3.2:60638162-60638181 None:intergenic 40.0%
CAACAATCCGGATACACTTA+GGG - chr3.2:60637707-60637726 MS.gene53859:intron 40.0%
CACAATTTCCCTCTTCATTG+GGG - chr3.2:60637663-60637682 MS.gene53859:intron 40.0%
CATTACTATTGCTCCTTGGA+GGG - chr3.2:60635140-60635159 MS.gene53859:intron 40.0%
CCACAATTTCCCTCTTCATT+GGG - chr3.2:60637662-60637681 MS.gene53859:intron 40.0%
CTATATCGTTGTCTGTCACT+TGG - chr3.2:60635468-60635487 MS.gene53859:intron 40.0%
CTGTTAACATGGGTCACAAT+GGG - chr3.2:60636646-60636665 MS.gene53859:intron 40.0%
CTTGGATGACATGAATAGGT+GGG + chr3.2:60639270-60639289 None:intergenic 40.0%
GAACCTACTCTAATAGTTGG+AGG - chr3.2:60636001-60636020 MS.gene53859:intron 40.0%
GACAATGATTCCATTCTACG+TGG + chr3.2:60635263-60635282 None:intergenic 40.0%
GATCGAGATTGCCAATGAAA+AGG + chr3.2:60635597-60635616 None:intergenic 40.0%
GATTCTCAGCCAACATGAAT+CGG + chr3.2:60635118-60635137 None:intergenic 40.0%
GATTGTTAACTCGTGTGGTT+AGG + chr3.2:60636549-60636568 None:intergenic 40.0%
GGATCCTCCCTAATAACTAA+CGG + chr3.2:60636714-60636733 None:intergenic 40.0%
TATTAACCCTCCATCCATTG+AGG - chr3.2:60638152-60638171 MS.gene53859:CDS 40.0%
TCTCAAACAGTCTCACAAGT+AGG + chr3.2:60634674-60634693 None:intergenic 40.0%
TCTCCATTACTATTGCTCCT+TGG - chr3.2:60635136-60635155 MS.gene53859:intron 40.0%
TGGAGGGTTAATACAACTGA+AGG + chr3.2:60638145-60638164 None:intergenic 40.0%
TGGTTAGTGACTCTATCCTT+TGG + chr3.2:60634448-60634467 None:intergenic 40.0%
TTGGATGACATGAATAGGTG+GGG + chr3.2:60639269-60639288 None:intergenic 40.0%
TTGTGACCCATGTTAACAGT+TGG + chr3.2:60636645-60636664 None:intergenic 40.0%
TTTAACCCTCAATGGATGGA+GGG + chr3.2:60638161-60638180 None:intergenic 40.0%
! ACAGGTCCACAAGTTAGTTT+AGG - chr3.2:60637966-60637985 MS.gene53859:intron 40.0%
! AGACCTAGGGTTTGATTTCT+TGG + chr3.2:60636276-60636295 None:intergenic 40.0%
! CGTTATTTCCCCAATGAAGA+GGG + chr3.2:60637674-60637693 None:intergenic 40.0%
! CTAACAGGCACACCAATTTT+AGG + chr3.2:60636058-60636077 None:intergenic 40.0%
! CTAGGGTTTGATTTCTTGGA+CGG + chr3.2:60636272-60636291 None:intergenic 40.0%
! TAGGGTTTGATTTCTTGGAC+GGG + chr3.2:60636271-60636290 None:intergenic 40.0%
! TCCAGTTTGGTTTCTGAATG+AGG + chr3.2:60637283-60637302 None:intergenic 40.0%
!!! AGGCACACCAATTTTAGGTT+CGG + chr3.2:60636053-60636072 None:intergenic 40.0%
AACAGTAAGGACCGAGAACA+AGG + chr3.2:60636446-60636465 None:intergenic 45.0%
AAGAACTGTCATTCCCTCCA+AGG + chr3.2:60635156-60635175 None:intergenic 45.0%
AATCAGCATCTTCTTCGCTG+CGG + chr3.2:60634498-60634517 None:intergenic 45.0%
AGACTGTTTGAGAGAGCTTG+TGG - chr3.2:60634681-60634700 MS.gene53859:CDS 45.0%
AGAGAGGGTGATAGTACCTA+CGG + chr3.2:60634329-60634348 None:intergenic 45.0%
AGCTAATGAAGCCAAAGCCT+CGG + chr3.2:60638267-60638286 None:intergenic 45.0%
AGGAGAAAACTGCCAACACA+AGG + chr3.2:60637409-60637428 None:intergenic 45.0%
AGGGAGGATCCTATTGCTTA+TGG - chr3.2:60636723-60636742 MS.gene53859:intron 45.0%
AGGTCAACCAATGATGCAAC+AGG - chr3.2:60639369-60639388 MS.gene53859:intron 45.0%
ATCATGAGAGATCCTGACAC+GGG - chr3.2:60638235-60638254 MS.gene53859:intron 45.0%
ATCGCCGTTAGTTATTAGGG+AGG - chr3.2:60636707-60636726 MS.gene53859:intron 45.0%
CAATGTACTCTCCTGAGTGT+TGG + chr3.2:60636900-60636919 None:intergenic 45.0%
CCAACAATCCGGATACACTT+AGG - chr3.2:60637706-60637725 MS.gene53859:intron 45.0%
CCATTACTATTGCTCCTTGG+AGG - chr3.2:60635139-60635158 MS.gene53859:intron 45.0%
CCCAATGAAGAGGGAAATTG+TGG + chr3.2:60637665-60637684 None:intergenic 45.0%
CCTAAGTGTATCCGGATTGT+TGG + chr3.2:60637709-60637728 None:intergenic 45.0%
CCTCCAAGGAGCAATAGTAA+TGG + chr3.2:60635142-60635161 None:intergenic 45.0%
CGTCCAAGAAATCAAACCCT+AGG - chr3.2:60636270-60636289 MS.gene53859:intron 45.0%
GATCATGAGAGATCCTGACA+CGG - chr3.2:60638234-60638253 MS.gene53859:intron 45.0%
GCCACAATTTCCCTCTTCAT+TGG - chr3.2:60637661-60637680 MS.gene53859:intron 45.0%
GCTTGGATGACATGAATAGG+TGG + chr3.2:60639271-60639290 None:intergenic 45.0%
GGCATCTGATTCAGCTATTG+AGG - chr3.2:60638300-60638319 MS.gene53859:intron 45.0%
GGTCAACCAATGATGCAACA+GGG - chr3.2:60639370-60639389 MS.gene53859:intron 45.0%
GGTGCTTGGATGACATGAAT+AGG + chr3.2:60639274-60639293 None:intergenic 45.0%
GTCACAATGGGTCTTACTGT+TGG - chr3.2:60636658-60636677 MS.gene53859:intron 45.0%
GTTCTCATATGCCAACACTC+AGG - chr3.2:60636886-60636905 MS.gene53859:intron 45.0%
TAACGGCGATTTAGATGGGA+TGG + chr3.2:60636697-60636716 None:intergenic 45.0%
TGGATGACATGAATAGGTGG+GGG + chr3.2:60639268-60639287 None:intergenic 45.0%
TGTGCTTTGACGGTAAGTGT+TGG + chr3.2:60636215-60636234 None:intergenic 45.0%
TTTGGCTGCAAGTAATCCGA+CGG - chr3.2:60639120-60639139 MS.gene53859:intron 45.0%
! ATCCGGATTGTTGGCTACTT+TGG + chr3.2:60637700-60637719 None:intergenic 45.0%
! GCGTTATTTCCCCAATGAAG+AGG + chr3.2:60637675-60637694 None:intergenic 45.0%
! TCCGGATTGTTGGCTACTTT+GGG + chr3.2:60637699-60637718 None:intergenic 45.0%
! TGGGAGCTTTTTGTTCAAGC+TGG - chr3.2:60634301-60634320 MS.gene53859:CDS 45.0%
! TGTCGGGCAAACCTTTTCAT+TGG - chr3.2:60635583-60635602 MS.gene53859:intron 45.0%
!! AGGAAGTTGGTAAGGTTGCA+AGG + chr3.2:60637138-60637157 None:intergenic 45.0%
!! GAATATTTCGTTTCTGGCGG+TGG + chr3.2:60636601-60636620 None:intergenic 45.0%
!! GAGTTCTGAGGATATCCCAT+AGG + chr3.2:60639568-60639587 None:intergenic 45.0%
!!! CAACAGTTTTGGGCCCTAAT+TGG + chr3.2:60634775-60634794 None:intergenic 45.0%
!!! TAAAACATTTAAAATTATTT+CGG - chr3.2:60638536-60638555 MS.gene53859:intron 5.0%
!!! TCAAATATATAAATTTTTTT+CGG - chr3.2:60636383-60636402 MS.gene53859:intron 5.0%
AAGTATCCAGCTAGCAGCAG+TGG - chr3.2:60635848-60635867 MS.gene53859:intron 50.0%
AATCGGGTCTCTATCTGCCA+TGG - chr3.2:60637624-60637643 MS.gene53859:intron 50.0%
ACTACCGGTCTGTGCTTTGA+CGG + chr3.2:60636225-60636244 None:intergenic 50.0%
ATCACTTCCCAATGCTCCTC+AGG - chr3.2:60639186-60639205 MS.gene53859:intron 50.0%
ATCTGCATAGGCTGAAAGGC+TGG + chr3.2:60639310-60639329 None:intergenic 50.0%
ATTCCATGGTGATTGGGAGG+TGG + chr3.2:60639604-60639623 None:intergenic 50.0%
CAACAGGGTGGACATCCTAT+GGG - chr3.2:60639550-60639569 MS.gene53859:intron 50.0%
CATTAACCACTGCTGCTAGC+TGG + chr3.2:60635857-60635876 None:intergenic 50.0%
CCCCAAAGTAGCCAACAATC+CGG - chr3.2:60637695-60637714 MS.gene53859:intron 50.0%
CTCCTCCAATGCAACAGTTC+AGG - chr3.2:60639398-60639417 MS.gene53859:intron 50.0%
CTGAACTGTTGCATTGGAGG+AGG + chr3.2:60639400-60639419 None:intergenic 50.0%
CTTACCGTCAAAGCACAGAC+CGG - chr3.2:60636218-60636237 MS.gene53859:intron 50.0%
GAAGAGGGAAATTGTGGCAC+TGG + chr3.2:60637659-60637678 None:intergenic 50.0%
GACACTAAAGGCGAAAGGCA+CGG - chr3.2:60638974-60638993 MS.gene53859:intron 50.0%
GAGAGGGTGATAGTACCTAC+GGG + chr3.2:60634328-60634347 None:intergenic 50.0%
GATGACATGAATAGGTGGGG+GGG + chr3.2:60639266-60639285 None:intergenic 50.0%
GCATGGCATCAACAACAGCA+AGG - chr3.2:60639349-60639368 MS.gene53859:intron 50.0%
GCTAATGAAGCCAAAGCCTC+GGG + chr3.2:60638266-60638285 None:intergenic 50.0%
GGATGACATGAATAGGTGGG+GGG + chr3.2:60639267-60639286 None:intergenic 50.0%
GGCATTCCCTGTTGCATCAT+TGG + chr3.2:60639379-60639398 None:intergenic 50.0%
GGTCGCATTCCATGGTGATT+GGG + chr3.2:60639610-60639629 None:intergenic 50.0%
TCATGAGAGATCCTGACACG+GGG - chr3.2:60638236-60638255 MS.gene53859:intron 50.0%
TCTATCTGCCATGGAAGCTG+AGG - chr3.2:60637633-60637652 MS.gene53859:intron 50.0%
TCTGCATAGGCTGAAAGGCT+GGG + chr3.2:60639309-60639328 None:intergenic 50.0%
TCTTCCACCGCCATCAGTAA+TGG - chr3.2:60639486-60639505 MS.gene53859:intron 50.0%
TGGCATCTGCATAGGCTGAA+AGG + chr3.2:60639314-60639333 None:intergenic 50.0%
TGGTCGCATTCCATGGTGAT+TGG + chr3.2:60639611-60639630 None:intergenic 50.0%
TTTGTTCAAGCTGGTCCCGT+AGG - chr3.2:60634310-60634329 MS.gene53859:CDS 50.0%
! ACAAACTAACGGACGGCATG+AGG + chr3.2:60636761-60636780 None:intergenic 50.0%
! ACCATTAGCCTGAGGAGCAT+TGG + chr3.2:60639197-60639216 None:intergenic 50.0%
! CAAACTAACGGACGGCATGA+GGG + chr3.2:60636760-60636779 None:intergenic 50.0%
! CCGGATTGTTGGCTACTTTG+GGG + chr3.2:60637698-60637717 None:intergenic 50.0%
! CGGATTGTTGGCTACTTTGG+GGG + chr3.2:60637697-60637716 None:intergenic 50.0%
! CTAACTTGTGGACCTGTCTC+AGG + chr3.2:60637963-60637982 None:intergenic 50.0%
! GGAATGGTACCATTAGCCTG+AGG + chr3.2:60639205-60639224 None:intergenic 50.0%
!! ATTACTGATGGCGGTGGAAG+AGG + chr3.2:60639487-60639506 None:intergenic 50.0%
!! CCATTAGCCTGAGGAGCATT+GGG + chr3.2:60639196-60639215 None:intergenic 50.0%
!! TATTTCGTTTCTGGCGGTGG+TGG + chr3.2:60636598-60636617 None:intergenic 50.0%
!! TGAGGAGCATTGGGAAGTGA+TGG + chr3.2:60639187-60639206 None:intergenic 50.0%
!! TGATGCCATGCTTGTTGTCC+AGG + chr3.2:60639340-60639359 None:intergenic 50.0%
AAGGTATGCAGGGACCTCCA+AGG - chr3.2:60639461-60639480 MS.gene53859:CDS 55.0%
ACACCATTAGCGAAGGGACG+AGG + chr3.2:60639241-60639260 None:intergenic 55.0%
ACCACCTCCACAAGGTATGC+AGG - chr3.2:60639450-60639469 MS.gene53859:CDS 55.0%
CACCACCTGGACAACAAGCA+TGG - chr3.2:60639332-60639351 MS.gene53859:intron 55.0%
CATGGAATGCGACCACCTTC+AGG - chr3.2:60639616-60639635 MS.gene53859:CDS 55.0%
CCACCTCCACAAGGTATGCA+GGG - chr3.2:60639451-60639470 MS.gene53859:CDS 55.0%
CCCAATGCTCCTCAGGCTAA+TGG - chr3.2:60639193-60639212 MS.gene53859:intron 55.0%
CGCATTCCATGGTGATTGGG+AGG + chr3.2:60639607-60639626 None:intergenic 55.0%
CTGAAGGTGGTCGCATTCCA+TGG + chr3.2:60639618-60639637 None:intergenic 55.0%
CTGCATAGGCTGAAAGGCTG+GGG + chr3.2:60639308-60639327 None:intergenic 55.0%
GCAACAGGGTGGACATCCTA+TGG - chr3.2:60639549-60639568 MS.gene53859:intron 55.0%
GGCCTGAACTGTTGCATTGG+AGG + chr3.2:60639403-60639422 None:intergenic 55.0%
GGTGGCCTGAACTGTTGCAT+TGG + chr3.2:60639406-60639425 None:intergenic 55.0%
TGCATACCTTGTGGAGGTGG+TGG + chr3.2:60639451-60639470 None:intergenic 55.0%
TGGCAGGCCAGCAACAAGTT+TGG - chr3.2:60639506-60639525 MS.gene53859:intron 55.0%
TGGCCTGCCATTACTGATGG+CGG + chr3.2:60639496-60639515 None:intergenic 55.0%
! ATACCTTGTGGAGGTGGTGG+TGG + chr3.2:60639448-60639467 None:intergenic 55.0%
! TGCTGGCCTGCCATTACTGA+TGG + chr3.2:60639499-60639518 None:intergenic 55.0%
!! CATGCTTGTTGTCCAGGTGG+TGG + chr3.2:60639334-60639353 None:intergenic 55.0%
!! GGAGCATTGGGAAGTGATGG+TGG + chr3.2:60639184-60639203 None:intergenic 55.0%
!! GTGGTCGCCAAACTTGTTGC+TGG + chr3.2:60639516-60639535 None:intergenic 55.0%
!! TGCCATGCTTGTTGTCCAGG+TGG + chr3.2:60639337-60639356 None:intergenic 55.0%
ACGGGGAATTCCCGAGGCTT+TGG - chr3.2:60638253-60638272 MS.gene53859:intron 60.0%
ATCCGACGGCACAGAAGAGC+AGG - chr3.2:60639134-60639153 MS.gene53859:intron 60.0%
CAAGAAAGGGGCTCACCTGC+GGG + chr3.2:60639004-60639023 None:intergenic 60.0%
CCACCGCCATCAGTAATGGC+AGG - chr3.2:60639490-60639509 MS.gene53859:intron 60.0%
CCATGGTGATTGGGAGGTGG+CGG + chr3.2:60639601-60639620 None:intergenic 60.0%
CCATTAGCGAAGGGACGAGG+AGG + chr3.2:60639238-60639257 None:intergenic 60.0%
CCCTGCATACCTTGTGGAGG+TGG + chr3.2:60639454-60639473 None:intergenic 60.0%
CCTATGCAGATGCCACCACC+TGG - chr3.2:60639319-60639338 MS.gene53859:intron 60.0%
CCTCCTCGTCCCTTCGCTAA+TGG - chr3.2:60639235-60639254 MS.gene53859:intron 60.0%
GCAAGAAAGGGGCTCACCTG+CGG + chr3.2:60639005-60639024 None:intergenic 60.0%
GGAGGTCCCTGCATACCTTG+TGG + chr3.2:60639460-60639479 None:intergenic 60.0%
GGATGTCCACCCTGTTGCTG+AGG + chr3.2:60639547-60639566 None:intergenic 60.0%
GGCATCTGCATCGAGTGAGG+TGG + chr3.2:60639424-60639443 None:intergenic 60.0%
GGGGCGACACCATTAGCGAA+GGG + chr3.2:60639247-60639266 None:intergenic 60.0%
GGTCCCTGCATACCTTGTGG+AGG + chr3.2:60639457-60639476 None:intergenic 60.0%
TGAAAGGCTGGGGCTTGTGG+AGG + chr3.2:60639298-60639317 None:intergenic 60.0%
TGTCCACCCTGTTGCTGAGG+TGG + chr3.2:60639544-60639563 None:intergenic 60.0%
! CCAGGTGGTGGCATCTGCAT+AGG + chr3.2:60639322-60639341 None:intergenic 60.0%
! GGTGGCGGCATTGAGTTCTG+AGG + chr3.2:60639580-60639599 None:intergenic 60.0%
!! AGGAGGCACTGGAGCAGGAA+TGG + chr3.2:60639221-60639240 None:intergenic 60.0%
!! CCTGCCATTACTGATGGCGG+TGG + chr3.2:60639493-60639512 None:intergenic 60.0%
!! TTCGTTTCTGGCGGTGGTGG+TGG + chr3.2:60636595-60636614 None:intergenic 60.0%
AAGGCTGGGGCTTGTGGAGG+TGG + chr3.2:60639295-60639314 None:intergenic 65.0%
ACCGCCACCACCTCAGCAAC+AGG - chr3.2:60639534-60639553 MS.gene53859:intron 65.0%
CCACCACCTCAGCAACAGGG+TGG - chr3.2:60639538-60639557 MS.gene53859:intron 65.0%
CCACCCTGTTGCTGAGGTGG+TGG + chr3.2:60639541-60639560 None:intergenic 65.0%
CCGCCACCACCTCAGCAACA+GGG - chr3.2:60639535-60639554 MS.gene53859:intron 65.0%
CCGCCACCTCCCAATCACCA+TGG - chr3.2:60639598-60639617 MS.gene53859:intron 65.0%
CCTCGGGAATTCCCCGTGTC+AGG + chr3.2:60638250-60638269 None:intergenic 65.0%
CCTGACACGGGGAATTCCCG+AGG - chr3.2:60638247-60638266 MS.gene53859:intron 65.0%
GGCCTGCTCTTCTGTGCCGT+CGG + chr3.2:60639139-60639158 None:intergenic 65.0%
GGCGGCATCTGCATCGAGTG+AGG + chr3.2:60639427-60639446 None:intergenic 65.0%
GGCTGAAAGGCTGGGGCTTG+TGG + chr3.2:60639301-60639320 None:intergenic 65.0%
GGGCTTGTGGAGGTGGTGCT+TGG + chr3.2:60639288-60639307 None:intergenic 65.0%
GGGGGCGACACCATTAGCGA+AGG + chr3.2:60639248-60639267 None:intergenic 65.0%
! CCCTGTTGCTGAGGTGGTGG+CGG + chr3.2:60639538-60639557 None:intergenic 65.0%
! GAAAGGCACGGTACTCCCGC+AGG - chr3.2:60638986-60639005 MS.gene53859:intron 65.0%
! GATGGCGGTGGAAGAGGCCT+TGG + chr3.2:60639481-60639500 None:intergenic 65.0%
! TGATTGGGAGGTGGCGGTGG+CGG + chr3.2:60639595-60639614 None:intergenic 65.0%
! TGGTGATTGGGAGGTGGCGG+TGG + chr3.2:60639598-60639617 None:intergenic 65.0%
!! CCTTGTGGAGGTGGTGGTGG+CGG + chr3.2:60639445-60639464 None:intergenic 65.0%
!! GGCACTGGCCTCAGCTTCCA+TGG + chr3.2:60637644-60637663 None:intergenic 65.0%
!! TGTTGCTGAGGTGGTGGCGG+TGG + chr3.2:60639535-60639554 None:intergenic 65.0%
CCGCCACCACCACCTCCACA+AGG - chr3.2:60639442-60639461 MS.gene53859:CDS 70.0%
GGCGGTGGAAGAGGCCTTGG+AGG + chr3.2:60639478-60639497 None:intergenic 70.0%
! GCGAAGGGACGAGGAGGCAC+TGG + chr3.2:60639232-60639251 None:intergenic 70.0%
!! GGACGAGGAGGCACTGGAGC+AGG + chr3.2:60639226-60639245 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 60634292 60639642 60634292 ID=MS.gene53859
chr3.2 mRNA 60634292 60639642 60634292 ID=MS.gene53859.t1;Parent=MS.gene53859
chr3.2 exon 60639603 60639642 60639603 ID=MS.gene53859.t1.exon1;Parent=MS.gene53859.t1
chr3.2 CDS 60639603 60639642 60639603 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60639415 60639503 60639415 ID=MS.gene53859.t1.exon2;Parent=MS.gene53859.t1
chr3.2 CDS 60639415 60639503 60639415 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60639279 60639335 60639279 ID=MS.gene53859.t1.exon3;Parent=MS.gene53859.t1
chr3.2 CDS 60639279 60639335 60639279 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60638316 60638357 60638316 ID=MS.gene53859.t1.exon4;Parent=MS.gene53859.t1
chr3.2 CDS 60638316 60638357 60638316 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60638147 60638212 60638147 ID=MS.gene53859.t1.exon5;Parent=MS.gene53859.t1
chr3.2 CDS 60638147 60638212 60638147 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60635613 60635699 60635613 ID=MS.gene53859.t1.exon6;Parent=MS.gene53859.t1
chr3.2 CDS 60635613 60635699 60635613 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60634927 60635020 60634927 ID=MS.gene53859.t1.exon7;Parent=MS.gene53859.t1
chr3.2 CDS 60634927 60635020 60634927 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
chr3.2 exon 60634292 60634821 60634292 ID=MS.gene53859.t1.exon8;Parent=MS.gene53859.t1
chr3.2 CDS 60634292 60634821 60634292 ID=cds.MS.gene53859.t1;Parent=MS.gene53859.t1
Gene Sequence

>MS.gene53859

GAATTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCCGTAGGTACTATCACCCTCTCTCTCTTTCTCTCTTATTCATTTAGTTTAGGGTAATTCAATTCAATACATTGAAATTTAACTTAACTTATTGCTTTTGATTCAGTTAATGTGTATGTTCCAAAGGATAGAGTCACTAACCAACATCAAGGTTATGGATTTGTTGAATTCCGCAGCGAAGAAGATGCTGATTATGTATGTTTTCTTCATTCCTTGCTCCGCTTATTATTTGCTACCAAATTAACATAAAACCTAATTGCTTGTTTTGTTGCAGGCCATTAAAGTACTTAACATGATTAAACTTTATGGAAAACCAATTCGTGTAAATAAGGTACGTTTTTCCATTCCTACTTGTGAGACTGTTTGAGAGAGCTTGTGGAAATAGATTATAATCTCAATAAGCACTTATATCAATGTACTTGTGCTATAAACACTTAAGATGTTTATCCAATTAGGGCCCAAAACTGTTGTTCATATTCTTGATTCCCCTTTGAATGGAGTTAATTTTGTTCCACTGCATTCTGTTGTATATTTATGTATTGATAGAGATATAGTTTAGTCATTTTATTAAGTGCATGTATATTGTGTTTGTTATCATTTAGATAGAAGTTGGTTGATGCAGTTACAAAACTGCCGAGTTATTAGTTTTCTGCTTGGGCACTGTATTTGTATGTTATCTGAAGATTAGTCAATTTGATTCGTAACATTCATAATTTGAACCCTAGTTTTCATTTCTGTTTTTCTATCAACTCTAACAAAAGATAAATAAAAAAACAAAGTCAGTATTGAACCGATTCATGTTGGCTGAGAATCTCCATTACTATTGCTCCTTGGAGGGAATGACAGTTCTTGTATTTGGAAATAAATTTAGAGATTCTAAGATGGGATTATTTTTTTGTGTCATTTTTCTCGTACTAAAAACAAATATCTTAATACCACGTAGAATGGAATCATTGTCATTGCACACCATTTTATGTGGACCAAGTTCTAACCACCAAGTATTATACTAATATAATATTCATCTGTTATTTTCCCAATCCTTATTGTATATCATTCGAATTCGAAGATGTCGTTTTAACAATTGAGTATTTCTCATTAATCACATAGAAATTAATTTTTCATGCTTACAATATGTATACTTATCTATATCGTTGTCTGTCACTTGGTGAAAGATATTTCAGTGTCTATGCTACTTGATTAAGAGTATTGATCTACTATTTCTTTGGTTTTAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGCAAACCTTTTCATTGGCAATCTCGATCCTGTAAGTCACCAAATATGAAAGTTTTTCATTTAATTTTAAATAGATTAAAATGTGCTGGGCTTTGTGATCAGATTTAACAAGACTCTTAATGTTTCTGTTGCAGGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCCAAGGTTTTACTCTTCTAATTTCTTTCATCTTACCTGATAGTGTTGTTTGTTTCATTTAAGTAAAAGTATCCAGCTAGCAGCAGTGGTTAATGCTTTTCATACATCACCATACACACTATTTTACATCATGGCCATTAATATTTTGTGATTGAAGATTTAGTCAGAAACCCTTGTTGGTTTTCTGAGAATACAGAATTTAAATAACATAGGCTGACTGAACCTACTCTAATAGTTGGAGGAAAAATGAAAGAATGAGGAAATTATTCCGAACCTAAAATTGGTGTGCCTGTTAGCTATCTGAGAACTAAATATCAAGACTTTGGATTATCTGGACACATTGTGAAATGGTTCACGAATGTTTGTTGCCCCAATACAATATTTACCGAGCTAGTCACATTTAATGCTAATTCTTATCACTGAATTCTCTCCAACACTTACCGTCAAAGCACAGACCGGTAGTCGATATTAATCATTCTTGGCTGGCCCGTCCAAGAAATCAAACCCTAGGTCTCAACAATGTTTTCAAGAGAATATCCACTTTATGATTTCCCTTGAAGACTTGTAAGTATAAATTAGGTAGTCTCGGGCCATTTAAGTATCAAATATATAAATTTTTTTCGGTCACTATTCTACTGGACAGTCATACTTCTTTAGTAAACCTTGTTCTCGGTCCTTACTGTTTTTTCTAAAATACAGAATTTCCATGATATAGGCTGTAGTGTTTAGCTGCTTAAATCATAGAAAATAATGAGGATATCACTCCTAACCACACGAGTTAACAATCATACAATTGGGAGGGAGATTTAACCACCACCACCGCCAGAAACGAAATATTCAATTGTTCATGTTCACAAAGACCAACTGTTAACATGGGTCACAATGGGTCTTACTGTTGGAATTATATGATATCCATCCCATCTAAATCGCCGTTAGTTATTAGGGAGGATCCTATTGCTTATGGTGTTAGCTTCTCCCTCATGCCGTCCGTTAGTTTGTAATCATCTTTTATCAATAAAAACTAGTTTCTACAAATATCTAAGTTACGGGTTTAAGGATATATACATCTTTTCTTGAAAAAGGGAATAATTTCTTTTCTTGTTCGTTCTCATATGCCAACACTCAGGAGAGTACATTGAAATTAGGAAACCATCAATTTTTTAAGGCTACCAATAAATGTGTACCCGTTTATATTGAATTGGAGTTTGCTCTTGGGAAATGATAGAGACCTGATTATGAAGGATAAGGGAAAGGGTTATTATGTAATAAATAGTATTAGTGAGGTGTTAAGTAATTAGTAGGGTGTCTAAGTAATAGAAACATCTTTATTTTGTTGTTAATAGTGGCTATTGTCCTTGCAACCTTACCAACTTCCTTGTAGTTTAGATAATTTTGTATTAAAGAAGGATGCCATCTTATGTCAAGATCCATCAGTTAATTTAAATTCATTTCCCCACTCACCGCTAATATTTATTTTTCCAACAACAATGAGACTATACCTCATTCAGAAACCAAACTGGAAAAGTAATTTTAGCTTAGCTCTTACTTCATAGTAGCTAACAAATATGGAATTTCAATCGTCTGAATTGGTTGCAATAGTCATTTTGGAAACTGATTTCCATTACCTTGTGTTGGCAGTTTTCTCCTTAAGACGTGACATCATTAACCTTTCCTCATTAATTAATTGTTAAAAATTTTCAAATCAGTACCATATATGATACTATATCACATTAGATATAATTAGTGTGCCTACAAATAATGATAAATATTTACTGAGCAATTTTCCCAAATTTGTAAAGTTTGAAGTAAGGTTTCACGGAAATTAAAATTTTAAACTTCATCAATCGGGTCTCTATCTGCCATGGAAGCTGAGGCCAGTGCCACAATTTCCCTCTTCATTGGGGAAATAACGCCCCCAAAGTAGCCAACAATCCGGATACACTTAGGGATTACAATCAATTTGCGATATTTATAGCTAATTACATTAAAAGTTACTTACCACTGATGTTTTTCTCTACATGTTTGTTTGAAAAGGTTCAGTCTAGTATCAAGCGGATGACTACATTTTGAGTACTTTTCCACATTTTTAGGCTTTATATGCTCTAATTATTTGTAGTATGACAAAATATACGTATCCTTGGGTAACACATCTATAATTATCTTCCCCATTAAAAAACACCTGAGACAGGTCCACAAGTTAGTTTAGGTTAAGTACTTTATCTGATGGATGGGTTATACTATGTTGGACGGTGCACTTTCAATTTTAATTGTATTTATGTTCGTACTCTTAAATTATCCCATTTATGTTCATGTATATGTGTAAATTGCTACGAGTTCTATCTCGTATTTATGTTCATACTCCTTCAGTTGTATTAACCCTCCATCCATTGAGGGTTAAATTTTACGCGTCAAAATTTAGCTTATGATCTGATGTTCAAGGCATTTCACTGCAGATCATGAGAGATCCTGACACGGGGAATTCCCGAGGCTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCTATTGAGGTATGACTTGTGTTTGTGTTTGAATCATATATAGAAATGCGTGAGATCAAACTTTCATTCTTTTGTTATTCGGCATTCATGATTACACATTGAAGCTTACTCATAGGAGTATATAACACTTGATAACAAACAAAATAGATGGATGGATAGGTTACCTTGTATCTACTATCTAATCATAGACTCTTTCGGGCTGTAAGACCCTGTATTAACATAGTAAAACATTTAAAATTATTTCGGTACCCTTCAAGTTTATATTTGACTTCATTTCGAGTGTTTCATGATTCTATGGCATCATTTGATCAATGACAACTTTCTTATATTTCTTGTCTTCCCTAAGTCAAATGAATTCATGCTGCAAAAAAGGGATTTGAAATTGGGAAAAATGTGGAGATTATTGTTTGTCTGACACTATGAAACATCAATTAGAAAAGTAGGAGTTGAATATTTGTTCTTTTAATATTCCATATTAGATGTAAGGAGTAGATAAAATCAAACAGAAGCATTAAATTAGGGAATATGATGCTTAATTCATAATTAGAAGGAAGTGAATATTCCCTCGTCACTGATAATGAATTATTTCTATATTTCACAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCGTATGCTTATAAGAAAGACACTAAAGGCGAAAGGCACGGTACTCCCGCAGGTGAGCCCCTTTCTTGCCACTTTTTTTTTTTTTTATGGTATCAATTAAAGCCTTCGTTGTTTCTGTACTATCTTTAGTTATCTTCTCATGTTTCCTTTGATGCAGAAAGAGTTTTGGCTGCAAGTAATCCGACGGCACAGAAGAGCAGGCCTCATACTTTATTTGCAAGTGGGCCACCATCACTTCCCAATGCTCCTCAGGCTAATGGTACCATTCCTGCTCCAGTGCCTCCTCGTCCCTTCGCTAATGGTGTCGCCCCCCCACCTATTCATGTCATCCAAGCACCACCTCCACAAGCCCCAGCCTTTCAGCCTATGCAGATGCCACCACCTGGACAACAAGCATGGCATCAACAACAGCAAGGTCAACCAATGATGCAACAGGGAATGCCTCCTCCAATGCAACAGTTCAGGCCACCTCACTCGATGCAGATGCCGCCACCACCACCTCCACAAGGTATGCAGGGACCTCCAAGGCCTCTTCCACCGCCATCAGTAATGGCAGGCCAGCAACAAGTTTGGCGACCACCGCCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGAACTCAATGCCGCCACCGCCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA

Protein sequence

>MS.gene53859.t1

ELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKLGCRANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQAPPPQAPAFQPMQMPPPGQQAWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG