Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82041.t1 | XP_003600919.1 | 93.6 | 518 | 32 | 1 | 1 | 518 | 1 | 517 | 3.10E-283 | 983.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82041.t1 | Q9XEE6 | 48.7 | 567 | 219 | 18 | 10 | 516 | 33 | 587 | 1.5e-124 | 448.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82041.t1 | G7JBT0 | 93.6 | 518 | 32 | 1 | 1 | 518 | 1 | 517 | 2.2e-283 | 983.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82041.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051837 | MS.gene82041 | 0.817356 | 3.44E-52 | -1.69E-46 |
| MS.gene057239 | MS.gene82041 | 0.847524 | 1.10E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82041.t1 | MTR_3g070880 | 93.629 | 518 | 32 | 1 | 1 | 518 | 1 | 517 | 0.0 | 1017 |
| MS.gene82041.t1 | MTR_5g082830 | 60.298 | 403 | 90 | 8 | 1 | 337 | 16 | 414 | 7.63e-159 | 468 |
| MS.gene82041.t1 | MTR_5g082830 | 51.452 | 241 | 89 | 9 | 299 | 516 | 439 | 674 | 6.71e-51 | 185 |
| MS.gene82041.t1 | MTR_1g075890 | 43.463 | 566 | 196 | 18 | 2 | 464 | 25 | 569 | 1.12e-124 | 379 |
| MS.gene82041.t1 | MTR_5g071070 | 45.000 | 440 | 155 | 8 | 8 | 370 | 33 | 462 | 4.66e-119 | 366 |
| MS.gene82041.t1 | MTR_5g071070 | 33.796 | 216 | 118 | 9 | 323 | 516 | 483 | 695 | 1.17e-15 | 80.5 |
| MS.gene82041.t1 | MTR_7g092070 | 35.606 | 660 | 227 | 18 | 10 | 493 | 47 | 684 | 1.73e-106 | 334 |
| MS.gene82041.t1 | MTR_5g071070 | 43.846 | 390 | 132 | 8 | 58 | 370 | 1 | 380 | 4.44e-98 | 309 |
| MS.gene82041.t1 | MTR_5g071070 | 33.796 | 216 | 118 | 9 | 323 | 516 | 401 | 613 | 1.59e-15 | 79.7 |
| MS.gene82041.t1 | MTR_3g464260 | 37.662 | 539 | 195 | 17 | 13 | 486 | 28 | 490 | 2.18e-88 | 281 |
| MS.gene82041.t1 | MTR_3g029590 | 31.791 | 670 | 251 | 21 | 8 | 493 | 43 | 690 | 7.79e-83 | 272 |
| MS.gene82041.t1 | MTR_3g435590 | 43.614 | 321 | 127 | 5 | 8 | 275 | 30 | 349 | 6.40e-82 | 263 |
| MS.gene82041.t1 | MTR_1g050438 | 41.667 | 336 | 127 | 6 | 10 | 281 | 15 | 345 | 9.37e-79 | 258 |
| MS.gene82041.t1 | MTR_0728s0020 | 41.667 | 336 | 127 | 6 | 10 | 281 | 31 | 361 | 3.76e-78 | 257 |
| MS.gene82041.t1 | MTR_3g464280 | 35.674 | 527 | 180 | 18 | 26 | 465 | 33 | 487 | 8.82e-73 | 239 |
| MS.gene82041.t1 | MTR_3g435680 | 47.867 | 211 | 82 | 3 | 104 | 290 | 67 | 273 | 2.59e-61 | 206 |
| MS.gene82041.t1 | MTR_3g464270 | 37.166 | 374 | 158 | 16 | 163 | 484 | 8 | 356 | 1.49e-50 | 177 |
| MS.gene82041.t1 | MTR_3g103960 | 53.247 | 154 | 58 | 3 | 154 | 306 | 43 | 183 | 6.57e-48 | 167 |
| MS.gene82041.t1 | MTR_6g090380 | 62.963 | 108 | 40 | 0 | 159 | 266 | 98 | 205 | 3.03e-47 | 169 |
| MS.gene82041.t1 | MTR_8g102100 | 57.377 | 122 | 52 | 0 | 160 | 281 | 77 | 198 | 4.81e-47 | 168 |
| MS.gene82041.t1 | MTR_3g464290 | 34.783 | 414 | 194 | 16 | 123 | 486 | 64 | 451 | 4.71e-46 | 167 |
| MS.gene82041.t1 | MTR_2g090605 | 58.559 | 111 | 46 | 0 | 164 | 274 | 77 | 187 | 1.17e-42 | 157 |
| MS.gene82041.t1 | MTR_4g078660 | 58.879 | 107 | 44 | 0 | 160 | 266 | 56 | 162 | 2.09e-42 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82041.t1 | AT3G55980 | 48.258 | 574 | 209 | 20 | 9 | 517 | 29 | 579 | 8.15e-155 | 454 |
| MS.gene82041.t1 | AT3G55980 | 48.258 | 574 | 209 | 20 | 9 | 517 | 96 | 646 | 1.54e-153 | 453 |
| MS.gene82041.t1 | AT2G40140 | 47.826 | 575 | 228 | 17 | 2 | 516 | 25 | 587 | 2.73e-153 | 451 |
| MS.gene82041.t1 | AT2G40140 | 47.826 | 575 | 228 | 17 | 2 | 516 | 25 | 587 | 2.73e-153 | 451 |
| MS.gene82041.t1 | AT5G58620 | 44.521 | 584 | 208 | 19 | 8 | 486 | 12 | 584 | 2.93e-142 | 423 |
| MS.gene82041.t1 | AT2G41900 | 43.478 | 437 | 150 | 12 | 10 | 353 | 48 | 480 | 7.69e-103 | 324 |
| MS.gene82041.t1 | AT5G12850 | 35.032 | 628 | 254 | 21 | 8 | 489 | 40 | 659 | 1.08e-101 | 321 |
| MS.gene82041.t1 | AT4G29190 | 49.718 | 177 | 77 | 3 | 137 | 301 | 52 | 228 | 1.67e-49 | 174 |
| MS.gene82041.t1 | AT2G19810 | 56.818 | 132 | 57 | 0 | 137 | 268 | 51 | 182 | 2.75e-49 | 174 |
| MS.gene82041.t1 | AT2G25900 | 62.500 | 112 | 42 | 0 | 160 | 271 | 86 | 197 | 7.47e-49 | 171 |
| MS.gene82041.t1 | AT2G25900 | 62.500 | 112 | 42 | 0 | 160 | 271 | 86 | 197 | 7.47e-49 | 171 |
| MS.gene82041.t1 | AT5G07500 | 56.098 | 123 | 54 | 0 | 144 | 266 | 32 | 154 | 6.66e-48 | 166 |
| MS.gene82041.t1 | AT1G03790 | 49.333 | 150 | 66 | 3 | 133 | 278 | 57 | 200 | 3.03e-41 | 153 |
| MS.gene82041.t1 | AT5G44260 | 51.880 | 133 | 57 | 2 | 140 | 271 | 42 | 168 | 9.15e-40 | 148 |
Find 112 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTAACAATCTCAAATT+TGG | 0.138458 | 3.2:-64474680 | None:intergenic |
| CTTGAACATGGTTCCTGTTT+TGG | 0.154085 | 3.2:-64475449 | None:intergenic |
| GACACGAAGCCAAAGCTTTA+TGG | 0.159998 | 3.2:+64475590 | MS.gene82041:CDS |
| TCTGAGAATTCTGAGATATT+TGG | 0.200828 | 3.2:+64475837 | MS.gene82041:CDS |
| CTTCTTTGTTTGGAAGCATT+AGG | 0.245406 | 3.2:+64474551 | MS.gene82041:CDS |
| AATAATCAAGCAGAAAATTT+TGG | 0.246655 | 3.2:+64474741 | MS.gene82041:CDS |
| CTTATGGTTGCTTCTTTGTT+TGG | 0.265933 | 3.2:+64474541 | MS.gene82041:CDS |
| CAGATTGGGTTTCAAATGAT+TGG | 0.282097 | 3.2:+64475679 | MS.gene82041:CDS |
| CAGCTATAAGGATACTTCTT+TGG | 0.295350 | 3.2:-64474970 | None:intergenic |
| CACATGTAATTTCCATTCTT+AGG | 0.300468 | 3.2:-64475273 | None:intergenic |
| ATTCAAGTAAAACTGAGTTT+TGG | 0.311642 | 3.2:-64474387 | None:intergenic |
| TTCTTTGTTTGGAAGCATTA+GGG | 0.311661 | 3.2:+64474552 | MS.gene82041:CDS |
| AAAACACCATTGTTTATATC+AGG | 0.317396 | 3.2:-64474829 | None:intergenic |
| CTCATAGATTGGAATTGATT+AGG | 0.322495 | 3.2:-64475411 | None:intergenic |
| TGAAAAGAGAACACCCCTTA+TGG | 0.338972 | 3.2:+64474525 | MS.gene82041:CDS |
| GGTGTAGAAACATTTGAAAT+TGG | 0.342203 | 3.2:-64475219 | None:intergenic |
| ACTCACATGCATCTTTCTTC+TGG | 0.348032 | 3.2:-64475026 | None:intergenic |
| GCTTCTAATTCCTTTAAATC+AGG | 0.352563 | 3.2:-64474766 | None:intergenic |
| ATGTAAATGAGGCAGGTTAT+TGG | 0.356150 | 3.2:+64474467 | MS.gene82041:CDS |
| GCATTACATTGTGCTGTTGC+TGG | 0.358959 | 3.2:+64474646 | MS.gene82041:CDS |
| TCGATTCGGAAGCACCGATA+TGG | 0.364885 | 3.2:-64475632 | None:intergenic |
| GAAGCTGAGAAGAAAGATTC+AGG | 0.379366 | 3.2:+64474784 | MS.gene82041:CDS |
| AGGCCTTTGTATGCTTCTAC+TGG | 0.382036 | 3.2:+64475168 | MS.gene82041:CDS |
| GAACTCTGGTCTGTCAGATT+GGG | 0.382476 | 3.2:+64475665 | MS.gene82041:CDS |
| ATGAGAAAATCATCAGCATA+TGG | 0.391943 | 3.2:+64475507 | MS.gene82041:CDS |
| GCATGTCCCTTTGCGAAACT+CGG | 0.397119 | 3.2:-64475004 | None:intergenic |
| GCATTGAAATACCATGTAAC+AGG | 0.408752 | 3.2:-64475377 | None:intergenic |
| GTTAAGCTCTTGCTTGATGC+TGG | 0.411467 | 3.2:+64474694 | MS.gene82041:CDS |
| CAAAAGGGAAGTAGAAGAAA+AGG | 0.421816 | 3.2:+64474438 | MS.gene82041:CDS |
| TGAACTCTGGTCTGTCAGAT+TGG | 0.432028 | 3.2:+64475664 | MS.gene82041:CDS |
| GCATGTTGAGGCCGTGCAAC+GGG | 0.432944 | 3.2:-64475768 | None:intergenic |
| TGGAATTGATTAGGAGTTGA+AGG | 0.434731 | 3.2:-64475402 | None:intergenic |
| ATGATATTGAAGCATTCAAA+AGG | 0.436887 | 3.2:+64474422 | MS.gene82041:CDS |
| CAAACAAAGAAGCAACCATA+AGG | 0.445004 | 3.2:-64474540 | None:intergenic |
| GCTGAAACCTACTCATAGAT+TGG | 0.445115 | 3.2:-64475422 | None:intergenic |
| GGGCACGGAACACAGCTATA+AGG | 0.448836 | 3.2:-64474982 | None:intergenic |
| CACCGCGATCCATAAAGCTT+TGG | 0.452463 | 3.2:-64475599 | None:intergenic |
| TTCTCCCCTGGATGAACAAA+TGG | 0.453606 | 3.2:-64474931 | None:intergenic |
| GCTACAATTTGCTCTGTCCA+TGG | 0.454559 | 3.2:-64475903 | None:intergenic |
| CTGCAGCAGTGATGAATTCA+AGG | 0.455073 | 3.2:+64475553 | MS.gene82041:CDS |
| CATGTCCCTTTGCGAAACTC+GGG | 0.458325 | 3.2:-64475003 | None:intergenic |
| AATCTCATCTTTACAAAGCC+TGG | 0.458636 | 3.2:-64475097 | None:intergenic |
| GGTTTCAGCAGAACCAAAAC+AGG | 0.464964 | 3.2:+64475436 | MS.gene82041:CDS |
| GGCTTTGTAAAGATGAGATT+AGG | 0.465521 | 3.2:+64475100 | MS.gene82041:CDS |
| AAAAGGGAAGTAGAAGAAAA+GGG | 0.470783 | 3.2:+64474439 | MS.gene82041:CDS |
| GTTTGATTCATCAGCTGCTA+TGG | 0.471231 | 3.2:+64475530 | MS.gene82041:CDS |
| AAACAAAGAAGCAACCATAA+GGG | 0.473747 | 3.2:-64474539 | None:intergenic |
| GCTGATTCATCTCCTAAGAA+TGG | 0.478855 | 3.2:+64475261 | MS.gene82041:CDS |
| AGATTGGGTTTCAAATGATT+GGG | 0.479244 | 3.2:+64475680 | MS.gene82041:CDS |
| GTTCATCCTACTGTTCGATT+CGG | 0.479491 | 3.2:-64475646 | None:intergenic |
| TTCATCCAGGGGAGAATGCT+AGG | 0.479775 | 3.2:+64474938 | MS.gene82041:CDS |
| GGTTATGATGTAAATGAGGC+AGG | 0.483515 | 3.2:+64474460 | MS.gene82041:CDS |
| CTACAATTTGCTCTGTCCAT+GGG | 0.485011 | 3.2:-64475902 | None:intergenic |
| CAAGGGGTTACACTCATGAT+TGG | 0.486439 | 3.2:+64474899 | MS.gene82041:CDS |
| GATGAAACAATGCTGTTGAA+TGG | 0.488330 | 3.2:-64475480 | None:intergenic |
| GAGTGTCCATTTGTTCATCC+AGG | 0.489580 | 3.2:+64474925 | MS.gene82041:CDS |
| CTGCTTGATTATTTCATCAA+GGG | 0.490204 | 3.2:-64474731 | None:intergenic |
| TCTGCTTGATTATTTCATCA+AGG | 0.491359 | 3.2:-64474732 | None:intergenic |
| GGCATGTTGAGGCCGTGCAA+CGG | 0.492495 | 3.2:-64475769 | None:intergenic |
| AAGGGATTTGTATCAAGAAA+TGG | 0.494896 | 3.2:+64475353 | MS.gene82041:CDS |
| GAATGAACCCACGAGACATC+TGG | 0.502120 | 3.2:-64475795 | None:intergenic |
| AACCCACGAGACATCTGGTT+CGG | 0.516681 | 3.2:-64475790 | None:intergenic |
| CAAGAAATGGACCTGTTACA+TGG | 0.528005 | 3.2:+64475366 | MS.gene82041:CDS |
| TGATATTGAAGCATTCAAAA+GGG | 0.532093 | 3.2:+64474423 | MS.gene82041:CDS |
| CTTCTCCTAGCATTCTCCCC+TGG | 0.532406 | 3.2:-64474943 | None:intergenic |
| CTGCTGCTTCGCCCGTTGCA+CGG | 0.534070 | 3.2:+64475757 | MS.gene82041:CDS |
| TACACCACCTATGTCTCCAT+TGG | 0.535040 | 3.2:+64475236 | MS.gene82041:CDS |
| GTTAATGTGAACATGGCAAT+TGG | 0.535532 | 3.2:+64474607 | MS.gene82041:CDS |
| TGAGAAAATCATCAGCATAT+GGG | 0.536370 | 3.2:+64475508 | MS.gene82041:CDS |
| GGTTCATTCGCTTGTTCAAG+AGG | 0.536739 | 3.2:+64475809 | MS.gene82041:CDS |
| CCGTGCCCCGAGTTTCGCAA+AGG | 0.542263 | 3.2:+64474997 | MS.gene82041:CDS |
| CGTGCCCCGAGTTTCGCAAA+GGG | 0.545575 | 3.2:+64474998 | MS.gene82041:CDS |
| ATTGGCAAAGATTCTTGTGA+AGG | 0.549932 | 3.2:-64475201 | None:intergenic |
| CAAAGTGAAGACTTGCTCAA+GGG | 0.550348 | 3.2:+64474882 | MS.gene82041:CDS |
| AAAGGGTTATGATGTAAATG+AGG | 0.551386 | 3.2:+64474456 | MS.gene82041:CDS |
| TTGGGATGAGCTGCATAAGT+TGG | 0.555027 | 3.2:+64475698 | MS.gene82041:CDS |
| TCAGCTACCAATGGAGACAT+AGG | 0.556570 | 3.2:-64475243 | None:intergenic |
| AGTGTCCATTTGTTCATCCA+GGG | 0.559914 | 3.2:+64474926 | MS.gene82041:CDS |
| TCAAAGTGAAGACTTGCTCA+AGG | 0.569283 | 3.2:+64474881 | MS.gene82041:CDS |
| ATCAATTCCAATCTATGAGT+AGG | 0.579232 | 3.2:+64475415 | MS.gene82041:CDS |
| AGCCTGGTTCTGTATTGTGC+AGG | 0.587665 | 3.2:-64475081 | None:intergenic |
| CCTTTGCGAAACTCGGGGCA+CGG | 0.588011 | 3.2:-64474997 | None:intergenic |
| ATGCCGAACCAGATGTCTCG+TGG | 0.590815 | 3.2:+64475787 | MS.gene82041:CDS |
| TTACATTGTGCTGTTGCTGG+TGG | 0.591769 | 3.2:+64474649 | MS.gene82041:CDS |
| ATCCTGCACAATACAGAACC+AGG | 0.592720 | 3.2:+64475079 | MS.gene82041:CDS |
| GGAGATGAATCAGCTACCAA+TGG | 0.593824 | 3.2:-64475252 | None:intergenic |
| AACAAAGAAGCAACCATAAG+GGG | 0.599426 | 3.2:-64474538 | None:intergenic |
| AAAGTGAAGACTTGCTCAAG+GGG | 0.602277 | 3.2:+64474883 | MS.gene82041:CDS |
| CTGAGATATTTGGTGCTGAG+AGG | 0.605138 | 3.2:+64475847 | MS.gene82041:CDS |
| ACATCTGGTTCGGCATGTTG+AGG | 0.605882 | 3.2:-64475780 | None:intergenic |
| CATCATCATTCAAACAAACA+TGG | 0.606083 | 3.2:+64474585 | MS.gene82041:CDS |
| AAACATGGTTAATGTGAACA+TGG | 0.608674 | 3.2:+64474600 | MS.gene82041:CDS |
| ATGGATAACTTGCTTGAACA+TGG | 0.610654 | 3.2:-64475461 | None:intergenic |
| GTGCTTCCGAATCGAACAGT+AGG | 0.611938 | 3.2:+64475640 | MS.gene82041:CDS |
| CTAAGAATGGAAATTACATG+TGG | 0.612183 | 3.2:+64475274 | MS.gene82041:CDS |
| TTTGTTTGGAAGCATTAGGG+TGG | 0.614081 | 3.2:+64474555 | MS.gene82041:CDS |
| CACACAAACATGAAGAGTTG+AGG | 0.614467 | 3.2:+64475148 | MS.gene82041:CDS |
| TACAATTTGCTCTGTCCATG+GGG | 0.617465 | 3.2:-64475901 | None:intergenic |
| ATGTCCCTTTGCGAAACTCG+GGG | 0.621584 | 3.2:-64475002 | None:intergenic |
| TGGATGAACAAATGGACACT+CGG | 0.631229 | 3.2:-64474923 | None:intergenic |
| GTGTCCATTTGTTCATCCAG+GGG | 0.633464 | 3.2:+64474927 | MS.gene82041:CDS |
| TCATTGCCTGATATAAACAA+TGG | 0.636775 | 3.2:+64474823 | MS.gene82041:CDS |
| TCGAACAGTAGGATGAACTC+TGG | 0.639055 | 3.2:+64475651 | MS.gene82041:CDS |
| TGCCGAACCAGATGTCTCGT+GGG | 0.643543 | 3.2:+64475788 | MS.gene82041:CDS |
| GGTGTGTCAAGACACCATAT+CGG | 0.652931 | 3.2:+64475618 | MS.gene82041:CDS |
| AGCCAAAGCTTTATGGATCG+CGG | 0.654674 | 3.2:+64475597 | MS.gene82041:CDS |
| GCTTTGGCTTCGTGTCACAA+AGG | 0.657576 | 3.2:-64475583 | None:intergenic |
| ATAAACAGAAGTTATCCCCA+TGG | 0.657774 | 3.2:+64475886 | MS.gene82041:CDS |
| GCTACCAATGGAGACATAGG+TGG | 0.695473 | 3.2:-64475240 | None:intergenic |
| GAACCAGTAGAAGCATACAA+AGG | 0.717416 | 3.2:-64475171 | None:intergenic |
| AAATATCTCAGAATTCTCAG+AGG | 0.724613 | 3.2:-64475835 | None:intergenic |
| GATGCATGTGAGTATTCACA+TGG | 0.742964 | 3.2:+64475036 | MS.gene82041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGATTTAGAAATAATA+TGG | + | chr3.2:64475734-64475753 | MS.gene82041:CDS | 15.0% |
| !! | TATTGGTATTGTAGAAAAAT+AGG | + | chr3.2:64474484-64474503 | MS.gene82041:CDS | 20.0% |
| !!! | AATAATCAAGCAGAAAATTT+TGG | + | chr3.2:64474741-64474760 | MS.gene82041:CDS | 20.0% |
| ! | AAAACACCATTGTTTATATC+AGG | - | chr3.2:64474832-64474851 | None:intergenic | 25.0% |
| !! | ATGATATTGAAGCATTCAAA+AGG | + | chr3.2:64474422-64474441 | MS.gene82041:CDS | 25.0% |
| !! | ATTCAAGTAAAACTGAGTTT+TGG | - | chr3.2:64474390-64474409 | None:intergenic | 25.0% |
| !! | TGATATTGAAGCATTCAAAA+GGG | + | chr3.2:64474423-64474442 | MS.gene82041:CDS | 25.0% |
| AAAAGGGAAGTAGAAGAAAA+GGG | + | chr3.2:64474439-64474458 | MS.gene82041:CDS | 30.0% | |
| AAACAAAGAAGCAACCATAA+GGG | - | chr3.2:64474542-64474561 | None:intergenic | 30.0% | |
| AAACATGGTTAATGTGAACA+TGG | + | chr3.2:64474600-64474619 | MS.gene82041:CDS | 30.0% | |
| AAAGGGTTATGATGTAAATG+AGG | + | chr3.2:64474456-64474475 | MS.gene82041:CDS | 30.0% | |
| AAATATCTCAGAATTCTCAG+AGG | - | chr3.2:64475838-64475857 | None:intergenic | 30.0% | |
| AAGGGATTTGTATCAAGAAA+TGG | + | chr3.2:64475353-64475372 | MS.gene82041:CDS | 30.0% | |
| AGATTGGGTTTCAAATGATT+GGG | + | chr3.2:64475680-64475699 | MS.gene82041:CDS | 30.0% | |
| ATCAATTCCAATCTATGAGT+AGG | + | chr3.2:64475415-64475434 | MS.gene82041:CDS | 30.0% | |
| ATGAGAAAATCATCAGCATA+TGG | + | chr3.2:64475507-64475526 | MS.gene82041:CDS | 30.0% | |
| CACATGTAATTTCCATTCTT+AGG | - | chr3.2:64475276-64475295 | None:intergenic | 30.0% | |
| CATCATCATTCAAACAAACA+TGG | + | chr3.2:64474585-64474604 | MS.gene82041:CDS | 30.0% | |
| CTAAGAATGGAAATTACATG+TGG | + | chr3.2:64475274-64475293 | MS.gene82041:CDS | 30.0% | |
| CTCATAGATTGGAATTGATT+AGG | - | chr3.2:64475414-64475433 | None:intergenic | 30.0% | |
| CTGCTTGATTATTTCATCAA+GGG | - | chr3.2:64474734-64474753 | None:intergenic | 30.0% | |
| GAAAAATTCTTTGAGTGCAA+GGG | + | chr3.2:64475335-64475354 | MS.gene82041:CDS | 30.0% | |
| GAGCTTAACAATCTCAAATT+TGG | - | chr3.2:64474683-64474702 | None:intergenic | 30.0% | |
| GCTTCTAATTCCTTTAAATC+AGG | - | chr3.2:64474769-64474788 | None:intergenic | 30.0% | |
| TCATTGCCTGATATAAACAA+TGG | + | chr3.2:64474823-64474842 | MS.gene82041:CDS | 30.0% | |
| TCTGCTTGATTATTTCATCA+AGG | - | chr3.2:64474735-64474754 | None:intergenic | 30.0% | |
| TGAAAAATTCTTTGAGTGCA+AGG | + | chr3.2:64475334-64475353 | MS.gene82041:CDS | 30.0% | |
| TGAGAAAATCATCAGCATAT+GGG | + | chr3.2:64475508-64475527 | MS.gene82041:CDS | 30.0% | |
| ! | GGTGTAGAAACATTTGAAAT+TGG | - | chr3.2:64475222-64475241 | None:intergenic | 30.0% |
| ! | TATGCTGATGATTTTCTCAT+AGG | - | chr3.2:64475507-64475526 | None:intergenic | 30.0% |
| ! | TTGGAAAAATCTGCTTCTTT+TGG | + | chr3.2:64475717-64475736 | MS.gene82041:CDS | 30.0% |
| !! | TCTGAGAATTCTGAGATATT+TGG | + | chr3.2:64475837-64475856 | MS.gene82041:CDS | 30.0% |
| !! | TTCTTTGTTTGGAAGCATTA+GGG | + | chr3.2:64474552-64474571 | MS.gene82041:CDS | 30.0% |
| !!! | AATTTTGGTGCCTGATTTAA+AGG | + | chr3.2:64474756-64474775 | MS.gene82041:CDS | 30.0% |
| AACAAAGAAGCAACCATAAG+GGG | - | chr3.2:64474541-64474560 | None:intergenic | 35.0% | |
| AATCTCATCTTTACAAAGCC+TGG | - | chr3.2:64475100-64475119 | None:intergenic | 35.0% | |
| ATAAACAGAAGTTATCCCCA+TGG | + | chr3.2:64475886-64475905 | MS.gene82041:CDS | 35.0% | |
| ATGTAAATGAGGCAGGTTAT+TGG | + | chr3.2:64474467-64474486 | MS.gene82041:CDS | 35.0% | |
| ATTGGCAAAGATTCTTGTGA+AGG | - | chr3.2:64475204-64475223 | None:intergenic | 35.0% | |
| CAAAAGGGAAGTAGAAGAAA+AGG | + | chr3.2:64474438-64474457 | MS.gene82041:CDS | 35.0% | |
| CAAACAAAGAAGCAACCATA+AGG | - | chr3.2:64474543-64474562 | None:intergenic | 35.0% | |
| CAGATTGGGTTTCAAATGAT+TGG | + | chr3.2:64475679-64475698 | MS.gene82041:CDS | 35.0% | |
| CAGCTATAAGGATACTTCTT+TGG | - | chr3.2:64474973-64474992 | None:intergenic | 35.0% | |
| CTTATGGTTGCTTCTTTGTT+TGG | + | chr3.2:64474541-64474560 | MS.gene82041:CDS | 35.0% | |
| GATGAAACAATGCTGTTGAA+TGG | - | chr3.2:64475483-64475502 | None:intergenic | 35.0% | |
| GCATTGAAATACCATGTAAC+AGG | - | chr3.2:64475380-64475399 | None:intergenic | 35.0% | |
| GTTAATGTGAACATGGCAAT+TGG | + | chr3.2:64474607-64474626 | MS.gene82041:CDS | 35.0% | |
| TGGAATTGATTAGGAGTTGA+AGG | - | chr3.2:64475405-64475424 | None:intergenic | 35.0% | |
| ! | GGCTTTGTAAAGATGAGATT+AGG | + | chr3.2:64475100-64475119 | MS.gene82041:CDS | 35.0% |
| !! | ATGGATAACTTGCTTGAACA+TGG | - | chr3.2:64475464-64475483 | None:intergenic | 35.0% |
| !! | CTTCTTTGTTTGGAAGCATT+AGG | + | chr3.2:64474551-64474570 | MS.gene82041:CDS | 35.0% |
| !! | GAATTTTTCAGCTGCAATGA+AGG | - | chr3.2:64475324-64475343 | None:intergenic | 35.0% |
| ACTCACATGCATCTTTCTTC+TGG | - | chr3.2:64475029-64475048 | None:intergenic | 40.0% | |
| AGTGTCCATTTGTTCATCCA+GGG | + | chr3.2:64474926-64474945 | MS.gene82041:CDS | 40.0% | |
| CAAGAAATGGACCTGTTACA+TGG | + | chr3.2:64475366-64475385 | MS.gene82041:CDS | 40.0% | |
| CACACAAACATGAAGAGTTG+AGG | + | chr3.2:64475148-64475167 | MS.gene82041:CDS | 40.0% | |
| GAAGCTGAGAAGAAAGATTC+AGG | + | chr3.2:64474784-64474803 | MS.gene82041:CDS | 40.0% | |
| GATGCATGTGAGTATTCACA+TGG | + | chr3.2:64475036-64475055 | MS.gene82041:CDS | 40.0% | |
| GCTGAAACCTACTCATAGAT+TGG | - | chr3.2:64475425-64475444 | None:intergenic | 40.0% | |
| GGTTATGATGTAAATGAGGC+AGG | + | chr3.2:64474460-64474479 | MS.gene82041:CDS | 40.0% | |
| GTTCATCCTACTGTTCGATT+CGG | - | chr3.2:64475649-64475668 | None:intergenic | 40.0% | |
| GTTTGATTCATCAGCTGCTA+TGG | + | chr3.2:64475530-64475549 | MS.gene82041:CDS | 40.0% | |
| TGAAAAGAGAACACCCCTTA+TGG | + | chr3.2:64474525-64474544 | MS.gene82041:CDS | 40.0% | |
| TGGATGAACAAATGGACACT+CGG | - | chr3.2:64474926-64474945 | None:intergenic | 40.0% | |
| ! | AAAGTGAAGACTTGCTCAAG+GGG | + | chr3.2:64474883-64474902 | MS.gene82041:CDS | 40.0% |
| ! | CAAAGTGAAGACTTGCTCAA+GGG | + | chr3.2:64474882-64474901 | MS.gene82041:CDS | 40.0% |
| ! | CTACAATTTGCTCTGTCCAT+GGG | - | chr3.2:64475905-64475924 | None:intergenic | 40.0% |
| ! | CTTGAACATGGTTCCTGTTT+TGG | - | chr3.2:64475452-64475471 | None:intergenic | 40.0% |
| ! | GAACCAGTAGAAGCATACAA+AGG | - | chr3.2:64475174-64475193 | None:intergenic | 40.0% |
| ! | GCTGATTCATCTCCTAAGAA+TGG | + | chr3.2:64475261-64475280 | MS.gene82041:CDS | 40.0% |
| ! | TACAATTTGCTCTGTCCATG+GGG | - | chr3.2:64475904-64475923 | None:intergenic | 40.0% |
| ! | TCAAAGTGAAGACTTGCTCA+AGG | + | chr3.2:64474881-64474900 | MS.gene82041:CDS | 40.0% |
| !! | TTTGTTTGGAAGCATTAGGG+TGG | + | chr3.2:64474555-64474574 | MS.gene82041:CDS | 40.0% |
| !! | TTTTTCAGCTGCAATGAAGG+TGG | - | chr3.2:64475321-64475340 | None:intergenic | 40.0% |
| AGGCCTTTGTATGCTTCTAC+TGG | + | chr3.2:64475168-64475187 | MS.gene82041:CDS | 45.0% | |
| ATCCTGCACAATACAGAACC+AGG | + | chr3.2:64475079-64475098 | MS.gene82041:CDS | 45.0% | |
| CAAGGGGTTACACTCATGAT+TGG | + | chr3.2:64474899-64474918 | MS.gene82041:CDS | 45.0% | |
| CTGCAGCAGTGATGAATTCA+AGG | + | chr3.2:64475553-64475572 | MS.gene82041:CDS | 45.0% | |
| GAACTCTGGTCTGTCAGATT+GGG | + | chr3.2:64475665-64475684 | MS.gene82041:CDS | 45.0% | |
| GACACGAAGCCAAAGCTTTA+TGG | + | chr3.2:64475590-64475609 | MS.gene82041:CDS | 45.0% | |
| GAGTGTCCATTTGTTCATCC+AGG | + | chr3.2:64474925-64474944 | MS.gene82041:CDS | 45.0% | |
| GGAGATGAATCAGCTACCAA+TGG | - | chr3.2:64475255-64475274 | None:intergenic | 45.0% | |
| GGTGTGTCAAGACACCATAT+CGG | + | chr3.2:64475618-64475637 | MS.gene82041:CDS | 45.0% | |
| GGTTCATTCGCTTGTTCAAG+AGG | + | chr3.2:64475809-64475828 | MS.gene82041:CDS | 45.0% | |
| GGTTTCAGCAGAACCAAAAC+AGG | + | chr3.2:64475436-64475455 | MS.gene82041:CDS | 45.0% | |
| GTGTCCATTTGTTCATCCAG+GGG | + | chr3.2:64474927-64474946 | MS.gene82041:CDS | 45.0% | |
| GTTAAGCTCTTGCTTGATGC+TGG | + | chr3.2:64474694-64474713 | MS.gene82041:CDS | 45.0% | |
| TACACCACCTATGTCTCCAT+TGG | + | chr3.2:64475236-64475255 | MS.gene82041:CDS | 45.0% | |
| TCAGCTACCAATGGAGACAT+AGG | - | chr3.2:64475246-64475265 | None:intergenic | 45.0% | |
| TCGAACAGTAGGATGAACTC+TGG | + | chr3.2:64475651-64475670 | MS.gene82041:CDS | 45.0% | |
| TGAACTCTGGTCTGTCAGAT+TGG | + | chr3.2:64475664-64475683 | MS.gene82041:CDS | 45.0% | |
| TTCTCCCCTGGATGAACAAA+TGG | - | chr3.2:64474934-64474953 | None:intergenic | 45.0% | |
| TTGGGATGAGCTGCATAAGT+TGG | + | chr3.2:64475698-64475717 | MS.gene82041:CDS | 45.0% | |
| ! | AGCCAAAGCTTTATGGATCG+CGG | + | chr3.2:64475597-64475616 | MS.gene82041:CDS | 45.0% |
| ! | GCATTACATTGTGCTGTTGC+TGG | + | chr3.2:64474646-64474665 | MS.gene82041:CDS | 45.0% |
| ! | GCTACAATTTGCTCTGTCCA+TGG | - | chr3.2:64475906-64475925 | None:intergenic | 45.0% |
| ! | TTACATTGTGCTGTTGCTGG+TGG | + | chr3.2:64474649-64474668 | MS.gene82041:CDS | 45.0% |
| !! | CTGAGATATTTGGTGCTGAG+AGG | + | chr3.2:64475847-64475866 | MS.gene82041:CDS | 45.0% |
| AACCCACGAGACATCTGGTT+CGG | - | chr3.2:64475793-64475812 | None:intergenic | 50.0% | |
| ATGTCCCTTTGCGAAACTCG+GGG | - | chr3.2:64475005-64475024 | None:intergenic | 50.0% | |
| CACCGCGATCCATAAAGCTT+TGG | - | chr3.2:64475602-64475621 | None:intergenic | 50.0% | |
| CATGTCCCTTTGCGAAACTC+GGG | - | chr3.2:64475006-64475025 | None:intergenic | 50.0% | |
| GAATGAACCCACGAGACATC+TGG | - | chr3.2:64475798-64475817 | None:intergenic | 50.0% | |
| GCATGTCCCTTTGCGAAACT+CGG | - | chr3.2:64475007-64475026 | None:intergenic | 50.0% | |
| GCTACCAATGGAGACATAGG+TGG | - | chr3.2:64475243-64475262 | None:intergenic | 50.0% | |
| GTGCTTCCGAATCGAACAGT+AGG | + | chr3.2:64475640-64475659 | MS.gene82041:CDS | 50.0% | |
| TTCATCCAGGGGAGAATGCT+AGG | + | chr3.2:64474938-64474957 | MS.gene82041:CDS | 50.0% | |
| ! | GCTTTGGCTTCGTGTCACAA+AGG | - | chr3.2:64475586-64475605 | None:intergenic | 50.0% |
| !! | ACATCTGGTTCGGCATGTTG+AGG | - | chr3.2:64475783-64475802 | None:intergenic | 50.0% |
| !! | AGCCTGGTTCTGTATTGTGC+AGG | - | chr3.2:64475084-64475103 | None:intergenic | 50.0% |
| !! | TCGATTCGGAAGCACCGATA+TGG | - | chr3.2:64475635-64475654 | None:intergenic | 50.0% |
| ATGCCGAACCAGATGTCTCG+TGG | + | chr3.2:64475787-64475806 | MS.gene82041:CDS | 55.0% | |
| CTTCTCCTAGCATTCTCCCC+TGG | - | chr3.2:64474946-64474965 | None:intergenic | 55.0% | |
| GGGCACGGAACACAGCTATA+AGG | - | chr3.2:64474985-64475004 | None:intergenic | 55.0% | |
| TGCCGAACCAGATGTCTCGT+GGG | + | chr3.2:64475788-64475807 | MS.gene82041:CDS | 55.0% | |
| CCTTTGCGAAACTCGGGGCA+CGG | - | chr3.2:64475000-64475019 | None:intergenic | 60.0% | |
| CGTGCCCCGAGTTTCGCAAA+GGG | + | chr3.2:64474998-64475017 | MS.gene82041:CDS | 60.0% | |
| GCATGTTGAGGCCGTGCAAC+GGG | - | chr3.2:64475771-64475790 | None:intergenic | 60.0% | |
| GGCATGTTGAGGCCGTGCAA+CGG | - | chr3.2:64475772-64475791 | None:intergenic | 60.0% | |
| CCGTGCCCCGAGTTTCGCAA+AGG | + | chr3.2:64474997-64475016 | MS.gene82041:CDS | 65.0% | |
| ! | CTGCTGCTTCGCCCGTTGCA+CGG | + | chr3.2:64475757-64475776 | MS.gene82041:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 64474373 | 64475929 | 64474373 | ID=MS.gene82041 |
| chr3.2 | mRNA | 64474373 | 64475929 | 64474373 | ID=MS.gene82041.t1;Parent=MS.gene82041 |
| chr3.2 | exon | 64474373 | 64475929 | 64474373 | ID=MS.gene82041.t1.exon1;Parent=MS.gene82041.t1 |
| chr3.2 | CDS | 64474373 | 64475929 | 64474373 | ID=cds.MS.gene82041.t1;Parent=MS.gene82041.t1 |
| Gene Sequence |
| Protein sequence |
