Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82123.t1 | XP_024627930.1 | 66.9 | 453 | 118 | 4 | 1 | 446 | 1 | 428 | 1.70E-140 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82123.t1 | A0A396I0R2 | 67.2 | 533 | 102 | 6 | 1 | 520 | 1 | 473 | 2.8e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene82123 | 0.855853 | 4.77E-62 | -1.69E-46 |
| MS.gene057814 | MS.gene82123 | 0.833091 | 6.51E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82123.t1 | MTR_2g102860 | 82.734 | 139 | 24 | 0 | 384 | 522 | 13 | 151 | 8.21e-68 | 216 |
| MS.gene82123.t1 | MTR_0029s0140 | 82.639 | 144 | 25 | 0 | 376 | 519 | 241 | 384 | 1.01e-67 | 224 |
| MS.gene82123.t1 | MTR_0029s0140 | 80.769 | 78 | 15 | 0 | 168 | 245 | 162 | 239 | 1.39e-40 | 151 |
| MS.gene82123.t1 | MTR_5g080310 | 79.195 | 149 | 27 | 1 | 378 | 526 | 122 | 266 | 3.95e-67 | 218 |
| MS.gene82123.t1 | MTR_2g020090 | 63.584 | 173 | 56 | 2 | 353 | 519 | 33 | 204 | 9.45e-67 | 215 |
| MS.gene82123.t1 | MTR_4g017750 | 82.517 | 143 | 21 | 1 | 377 | 519 | 110 | 248 | 1.64e-66 | 216 |
| MS.gene82123.t1 | MTR_3g058800 | 67.500 | 160 | 44 | 2 | 378 | 530 | 10 | 168 | 8.51e-65 | 208 |
| MS.gene82123.t1 | MTR_6g463490 | 82.906 | 117 | 20 | 0 | 406 | 522 | 3 | 119 | 1.25e-62 | 201 |
| MS.gene82123.t1 | MTR_1g023240 | 75.000 | 152 | 32 | 1 | 365 | 516 | 23 | 168 | 1.74e-60 | 201 |
| MS.gene82123.t1 | MTR_4g023110 | 73.134 | 134 | 35 | 1 | 376 | 509 | 7 | 139 | 2.71e-60 | 196 |
| MS.gene82123.t1 | MTR_8g027455 | 54.140 | 157 | 63 | 4 | 376 | 526 | 23 | 176 | 5.57e-42 | 156 |
| MS.gene82123.t1 | MTR_1g077650 | 66.346 | 104 | 34 | 1 | 377 | 480 | 46 | 148 | 9.13e-40 | 143 |
| MS.gene82123.t1 | MTR_7g035425 | 39.844 | 128 | 72 | 3 | 211 | 336 | 216 | 340 | 4.67e-23 | 100 |
| MS.gene82123.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 289 | 498 | 17 | 196 | 6.15e-20 | 89.7 |
| MS.gene82123.t1 | MTR_5g053700 | 80.000 | 50 | 6 | 1 | 470 | 519 | 1 | 46 | 5.46e-18 | 78.6 |
| MS.gene82123.t1 | MTR_2g077640 | 29.032 | 217 | 110 | 7 | 246 | 458 | 34 | 210 | 1.53e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 174 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 5.2:+17312167 | MS.gene82123:CDS |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 5.2:-17314585 | None:intergenic |
| CGGATTTGTTGTTGGGAAAA+AGG | 0.185562 | 5.2:-17311769 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 5.2:-17314777 | None:intergenic |
| TTTGGCACCATACCTCCTTA+TGG | 0.256563 | 5.2:+17311646 | MS.gene82123:CDS |
| CCAGTACATCCTGGATATTT+TGG | 0.258713 | 5.2:+17311628 | MS.gene82123:CDS |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 5.2:-17311734 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 5.2:-17311735 | None:intergenic |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 5.2:-17314621 | None:intergenic |
| TGATCAATTGGTTAAGTATT+GGG | 0.285226 | 5.2:+17312431 | MS.gene82123:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 5.2:-17311388 | None:intergenic |
| CCCGCCTATCTTTGATCAAT+TGG | 0.302825 | 5.2:+17312419 | MS.gene82123:CDS |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 5.2:+17312109 | MS.gene82123:CDS |
| TTGCTCTTTCCATTAGGTTT+CGG | 0.328125 | 5.2:-17311382 | None:intergenic |
| TTGGCACCATACCTCCTTAT+GGG | 0.340325 | 5.2:+17311647 | MS.gene82123:CDS |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 5.2:+17312271 | MS.gene82123:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 5.2:-17312478 | None:intergenic |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 5.2:+17314436 | MS.gene82123:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.372127 | 5.2:-17314832 | None:intergenic |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 5.2:+17311520 | MS.gene82123:CDS |
| GGATTTGTTGTTGTTGGGGA+AGG | 0.379887 | 5.2:-17311729 | None:intergenic |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 5.2:-17314628 | None:intergenic |
| TTGATCAATTGGTTAAGTAT+TGG | 0.389666 | 5.2:+17312430 | MS.gene82123:CDS |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 5.2:-17314584 | None:intergenic |
| CGAGAATCTCTCAGATAATC+CGG | 0.394695 | 5.2:-17311931 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAG+GGG | 0.399109 | 5.2:-17311727 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 5.2:-17312374 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 5.2:+17311510 | MS.gene82123:CDS |
| TTGTGGACGGATTTGTTGTT+GGG | 0.411777 | 5.2:-17311776 | None:intergenic |
| GTTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 5.2:-17311723 | None:intergenic |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 5.2:+17312491 | MS.gene82123:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 5.2:+17314528 | MS.gene82123:CDS |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 5.2:-17314640 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 5.2:+17312478 | MS.gene82123:CDS |
| CAGGAGCAGCTACACTAGCC+TGG | 0.433549 | 5.2:-17311549 | None:intergenic |
| AGGAGCAGCTGGCTCAGTTT+AGG | 0.434219 | 5.2:+17314749 | MS.gene82123:CDS |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 5.2:+17312272 | MS.gene82123:intron |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 5.2:+17314437 | MS.gene82123:CDS |
| TGAAGAGGGTGGTGGAGAGC+TGG | 0.438701 | 5.2:+17311888 | MS.gene82123:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 5.2:+17314630 | MS.gene82123:CDS |
| CCTCCTCATCTACCGGATAA+GGG | 0.441831 | 5.2:-17314831 | None:intergenic |
| GGAATGCCTCCGAAACCTAA+TGG | 0.442258 | 5.2:+17311373 | None:intergenic |
| CCAAAATATCCAGGATGTAC+TGG | 0.443632 | 5.2:-17311628 | None:intergenic |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.445154 | 5.2:-17312682 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 5.2:+17311950 | MS.gene82123:CDS |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 5.2:-17314620 | None:intergenic |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 5.2:-17311858 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 5.2:+17314514 | MS.gene82123:CDS |
| GCGGTATAATACGCACTTAG+TGG | 0.451303 | 5.2:+17311420 | MS.gene82123:CDS |
| GTTGTGGACGGATTTGTTGT+TGG | 0.460674 | 5.2:-17311777 | None:intergenic |
| TTAACCAATTGATCAAAGAT+AGG | 0.461920 | 5.2:-17312423 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 5.2:-17312078 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 5.2:-17311528 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 5.2:-17314597 | None:intergenic |
| AGAAAGCGGCCGCATTGGAT+TGG | 0.468839 | 5.2:+17312396 | MS.gene82123:CDS |
| GATTTGTTGTTGTTGGGGAA+GGG | 0.469554 | 5.2:-17311728 | None:intergenic |
| AGACAAGAAAGCGGCCGCAT+TGG | 0.471247 | 5.2:+17312391 | MS.gene82123:CDS |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 5.2:+17312368 | MS.gene82123:CDS |
| ACCGGATAAGGGTCAACATT+GGG | 0.473537 | 5.2:-17314820 | None:intergenic |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 5.2:+17314520 | MS.gene82123:CDS |
| GTTGTTGTTGGGGAACATGT+GGG | 0.484069 | 5.2:-17311804 | None:intergenic |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 5.2:-17314732 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.486144 | 5.2:-17311733 | None:intergenic |
| CACACCTTCCCAAGAACACT+TGG | 0.486595 | 5.2:-17312280 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 5.2:-17314561 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 5.2:+17312548 | MS.gene82123:CDS |
| TCCCAATGTTGACCCTTATC+CGG | 0.490951 | 5.2:+17314819 | MS.gene82123:CDS |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 5.2:+17311531 | MS.gene82123:CDS |
| TGTTGTTGTTGGGGAACATG+TGG | 0.495070 | 5.2:-17311805 | None:intergenic |
| GGCTCAGTTTAGGCAAGCCC+AGG | 0.496816 | 5.2:+17314759 | MS.gene82123:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 5.2:+17312449 | MS.gene82123:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 5.2:+17312492 | MS.gene82123:CDS |
| CTCTTTCCATTAGGTTTCGG+AGG | 0.502358 | 5.2:-17311379 | None:intergenic |
| GCAGTAGAAATGACAGGGAT+CGG | 0.504341 | 5.2:-17311469 | None:intergenic |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 5.2:+17311395 | MS.gene82123:CDS |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 5.2:+17314473 | MS.gene82123:CDS |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.511497 | 5.2:-17312729 | None:intergenic |
| GCAGGAGCAGAAGCCGTCGC+AGG | 0.511679 | 5.2:-17311568 | None:intergenic |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 5.2:+17314719 | MS.gene82123:CDS |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 5.2:-17311586 | None:intergenic |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.516082 | 5.2:-17311832 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 5.2:-17312100 | None:intergenic |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 5.2:-17314776 | None:intergenic |
| GCTTCAGCAGCCGGTTTGCA+AGG | 0.525763 | 5.2:-17312069 | None:intergenic |
| AATACTGCGACGAGCGTGCT+AGG | 0.528270 | 5.2:+17312731 | MS.gene82123:CDS |
| CAGTAGAAATGACAGGGATC+GGG | 0.530289 | 5.2:-17311468 | None:intergenic |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 5.2:-17314596 | None:intergenic |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 5.2:-17311611 | None:intergenic |
| CCAATTGATCAAAGATAGGC+GGG | 0.535490 | 5.2:-17312419 | None:intergenic |
| TCATCATCCTCCTCATCTAC+CGG | 0.536805 | 5.2:-17314838 | None:intergenic |
| GTAGATGCAGTAGAAATGAC+AGG | 0.540103 | 5.2:-17311475 | None:intergenic |
| AGGAGCAGCTACACTAGCCT+GGG | 0.541346 | 5.2:-17311548 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 5.2:+17314729 | MS.gene82123:CDS |
| GAAGGTCCCATAAGGAGGTA+TGG | 0.543026 | 5.2:-17311653 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 5.2:-17314795 | None:intergenic |
| GGAGGAAGGAAGGTCCCATA+AGG | 0.547026 | 5.2:-17311661 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.548144 | 5.2:+17314738 | MS.gene82123:CDS |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.548902 | 5.2:-17314663 | None:intergenic |
| GACGGCTTCTGCTCCTGCGA+CGG | 0.550829 | 5.2:+17311573 | MS.gene82123:CDS |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 5.2:-17314794 | None:intergenic |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 5.2:+17314629 | MS.gene82123:CDS |
| AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 5.2:-17314429 | None:intergenic |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 5.2:+17311619 | MS.gene82123:CDS |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 5.2:+17312741 | MS.gene82123:CDS |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 5.2:+17314501 | MS.gene82123:CDS |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 5.2:+17312657 | MS.gene82123:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 5.2:+17314766 | MS.gene82123:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 5.2:+17314586 | MS.gene82123:CDS |
| GGTATGGTGCCAAAATATCC+AGG | 0.563962 | 5.2:-17311637 | None:intergenic |
| ACAAGAAAATGTGGTTGAAG+AGG | 0.567814 | 5.2:+17311873 | MS.gene82123:CDS |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 5.2:+17311401 | MS.gene82123:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 5.2:+17314542 | MS.gene82123:CDS |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 5.2:-17312373 | None:intergenic |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 5.2:+17311511 | MS.gene82123:CDS |
| TACCGGATAAGGGTCAACAT+TGG | 0.575351 | 5.2:-17314821 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 5.2:+17312440 | MS.gene82123:CDS |
| TAGTGTAGCTGCTCCTGCGA+CGG | 0.577442 | 5.2:+17311555 | MS.gene82123:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 5.2:+17312485 | MS.gene82123:CDS |
| CCCTTATCCGGTAGATGAGG+AGG | 0.583535 | 5.2:+17314831 | MS.gene82123:CDS |
| CAAGAAAATGTGGTTGAAGA+GGG | 0.585597 | 5.2:+17311874 | MS.gene82123:CDS |
| TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 5.2:+17314410 | MS.gene82123:intron |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 5.2:+17314592 | MS.gene82123:CDS |
| ATGAAAGCTCGGAGGAAGGA+AGG | 0.588058 | 5.2:-17311671 | None:intergenic |
| CTTAGTGGACGCAGCGACAG+AGG | 0.588697 | 5.2:+17311435 | MS.gene82123:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 5.2:-17311973 | None:intergenic |
| AGAGCAATTAACACAACAGA+TGG | 0.589765 | 5.2:+17314675 | MS.gene82123:CDS |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 5.2:-17311604 | None:intergenic |
| GAAACCTAATGGAAAGAGCA+AGG | 0.595131 | 5.2:+17311384 | MS.gene82123:CDS |
| TATGGTGGTAAATGAAAGCT+CGG | 0.597302 | 5.2:-17311682 | None:intergenic |
| CTTGTGACAAATAGGCTAGG+AGG | 0.600406 | 5.2:+17312647 | MS.gene82123:intron |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 5.2:-17314791 | None:intergenic |
| GGATGATGAGGATGATGATG+AGG | 0.601222 | 5.2:+17314852 | MS.gene82123:CDS |
| GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 5.2:+17314423 | MS.gene82123:CDS |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 5.2:+17311958 | MS.gene82123:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 5.2:+17312479 | MS.gene82123:CDS |
| GAGAATCTCTCAGATAATCC+GGG | 0.611014 | 5.2:-17311930 | None:intergenic |
| CAGACCAAGTGTTCTTGGGA+AGG | 0.615925 | 5.2:+17312276 | MS.gene82123:intron |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 5.2:+17312361 | MS.gene82123:CDS |
| ACCAATTGATCAAAGATAGG+CGG | 0.621825 | 5.2:-17312420 | None:intergenic |
| AAATATCCAGGATGTACTGG+AGG | 0.622903 | 5.2:-17311625 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 5.2:+17314546 | MS.gene82123:CDS |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 5.2:+17311521 | MS.gene82123:CDS |
| GTAAATGAAAGCTCGGAGGA+AGG | 0.630697 | 5.2:-17311675 | None:intergenic |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 5.2:+17314502 | MS.gene82123:CDS |
| TGACCCTTATCCGGTAGATG+AGG | 0.632870 | 5.2:+17314828 | MS.gene82123:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 5.2:+17312656 | MS.gene82123:intron |
| TTGGAAGATATATGGTGATG+TGG | 0.635278 | 5.2:+17312128 | MS.gene82123:CDS |
| AATGTGGTTGAAGAGGGTGG+TGG | 0.635912 | 5.2:+17311880 | MS.gene82123:CDS |
| GGAAGGAAGGTCCCATAAGG+AGG | 0.636273 | 5.2:-17311658 | None:intergenic |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 5.2:+17314593 | MS.gene82123:CDS |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 5.2:-17311697 | None:intergenic |
| GGTAGATGAGGAGGATGATG+AGG | 0.638477 | 5.2:+17314840 | MS.gene82123:CDS |
| AAACCTAATGGAAAGAGCAA+GGG | 0.642664 | 5.2:+17311385 | MS.gene82123:CDS |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 5.2:-17311538 | None:intergenic |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 5.2:-17314440 | None:intergenic |
| GAAAATGTGGTTGAAGAGGG+TGG | 0.649938 | 5.2:+17311877 | MS.gene82123:CDS |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 5.2:+17312528 | MS.gene82123:CDS |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 5.2:-17314617 | None:intergenic |
| ACAACAGATGGCAAGTCAAG+CGG | 0.653147 | 5.2:+17314687 | MS.gene82123:CDS |
| TCAACATTGGGACTTAAAAG+CGG | 0.653227 | 5.2:-17314808 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 5.2:-17314790 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.655182 | 5.2:+17311864 | MS.gene82123:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.655945 | 5.2:-17311545 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 5.2:+17314547 | MS.gene82123:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 5.2:+17312513 | MS.gene82123:CDS |
| ACGCTCGTCGCAGTATTGGT+CGG | 0.662923 | 5.2:-17312725 | None:intergenic |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 5.2:+17312495 | MS.gene82123:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 5.2:+17312510 | MS.gene82123:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.680869 | 5.2:-17311624 | None:intergenic |
| TAGATGCAGTAGAAATGACA+GGG | 0.708529 | 5.2:-17311474 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 5.2:-17311610 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+CGG | 0.767887 | 5.2:-17312405 | None:intergenic |
| GGTGGTAAATGAAAGCTCGG+AGG | 0.772025 | 5.2:-17311679 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.777205 | 5.2:+17312382 | MS.gene82123:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAAATTAAATGATA+TGG | - | chr5.2:17312602-17312621 | None:intergenic | 10.0% |
| !!! | TTTTGATAATAAACAAAATA+AGG | - | chr5.2:17314303-17314322 | None:intergenic | 10.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | + | chr5.2:17313212-17313231 | MS.gene82123:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | + | chr5.2:17314396-17314415 | MS.gene82123:intron | 15.0% |
| !! | AATTCGGATTAAAAAAAATG+TGG | - | chr5.2:17312856-17312875 | None:intergenic | 20.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | - | chr5.2:17313463-17313482 | None:intergenic | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | - | chr5.2:17314130-17314149 | None:intergenic | 20.0% |
| !! | TGAAAAATTTGAGAAAAATC+AGG | + | chr5.2:17313372-17313391 | MS.gene82123:intron | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | - | chr5.2:17313826-17313845 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | + | chr5.2:17312857-17312876 | MS.gene82123:intron | 20.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr5.2:17312639-17312658 | MS.gene82123:intron | 20.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | - | chr5.2:17314382-17314401 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | - | chr5.2:17314284-17314303 | None:intergenic | 25.0% |
| ! | ACAAATTCATAAGCAATAAC+AGG | - | chr5.2:17313698-17313717 | None:intergenic | 25.0% |
| ! | CAAATTCATAAGCAATAACA+GGG | - | chr5.2:17313697-17313716 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | - | chr5.2:17314041-17314060 | None:intergenic | 25.0% |
| ! | TAAGACTTATGATAAAACTC+TGG | - | chr5.2:17313309-17313328 | None:intergenic | 25.0% |
| ! | TGATCAATTGGTTAAGTATT+GGG | + | chr5.2:17312431-17312450 | MS.gene82123:CDS | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | + | chr5.2:17313820-17313839 | MS.gene82123:intron | 25.0% |
| ! | TTAACCAATTGATCAAAGAT+AGG | - | chr5.2:17312426-17312445 | None:intergenic | 25.0% |
| ! | TTGATCAATTGGTTAAGTAT+TGG | + | chr5.2:17312430-17312449 | MS.gene82123:CDS | 25.0% |
| ! | TTTGTCAATCTAATGAAATG+AGG | + | chr5.2:17313178-17313197 | MS.gene82123:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | + | chr5.2:17314095-17314114 | MS.gene82123:intron | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | + | chr5.2:17313421-17313440 | MS.gene82123:intron | 25.0% |
| !!! | TGCACTATTTTTTTTAAGTG+TGG | + | chr5.2:17312904-17312923 | MS.gene82123:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | + | chr5.2:17314399-17314418 | MS.gene82123:intron | 25.0% |
| AAAACTGACTACTAAGGTAA+GGG | - | chr5.2:17313855-17313874 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | - | chr5.2:17313653-17313672 | None:intergenic | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | - | chr5.2:17313608-17313627 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | - | chr5.2:17314352-17314371 | None:intergenic | 30.0% | |
| AATGACAAACAAGACAAAAC+TGG | - | chr5.2:17312831-17312850 | None:intergenic | 30.0% | |
| ACGACAAAACACACAAAAAT+AGG | + | chr5.2:17312701-17312720 | MS.gene82123:CDS | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | - | chr5.2:17312103-17312122 | None:intergenic | 30.0% | |
| GGTTTCTGTCAAAAAAATTG+AGG | + | chr5.2:17313199-17313218 | MS.gene82123:intron | 30.0% | |
| TGAAGAATTGAGCTATGTAA+TGG | + | chr5.2:17313527-17313546 | MS.gene82123:intron | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | + | chr5.2:17313259-17313278 | MS.gene82123:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGTT+TGG | + | chr5.2:17313481-17313500 | MS.gene82123:intron | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | - | chr5.2:17313303-17313322 | None:intergenic | 30.0% | |
| TTTGTGTTATAGATGTCTTG+CGG | + | chr5.2:17313713-17313732 | MS.gene82123:intron | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr5.2:17312109-17312128 | MS.gene82123:CDS | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr5.2:17311912-17311931 | MS.gene82123:CDS | 30.0% |
| ! | TTCAACCACATTTTCTTGTT+GGG | - | chr5.2:17311872-17311891 | None:intergenic | 30.0% |
| ! | TTTGATGATACGAAACTGAA+CGG | + | chr5.2:17312951-17312970 | MS.gene82123:intron | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | - | chr5.2:17314218-17314237 | None:intergenic | 30.0% |
| !! | CATCACTTTTGGAAGATATA+TGG | + | chr5.2:17312120-17312139 | MS.gene82123:CDS | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | - | chr5.2:17314485-17314504 | None:intergenic | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | + | chr5.2:17311385-17311404 | MS.gene82123:CDS | 35.0% | |
| AACACTTGGAAAAAAGTTGC+TGG | + | chr5.2:17314487-17314506 | MS.gene82123:CDS | 35.0% | |
| AACCTACTGCCTTAATTGTA+TGG | + | chr5.2:17313147-17313166 | MS.gene82123:intron | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | + | chr5.2:17314514-17314533 | MS.gene82123:CDS | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | - | chr5.2:17314126-17314145 | None:intergenic | 35.0% | |
| ACAAGAAAATGTGGTTGAAG+AGG | + | chr5.2:17311873-17311892 | MS.gene82123:CDS | 35.0% | |
| ACCAATTGATCAAAGATAGG+CGG | - | chr5.2:17312423-17312442 | None:intergenic | 35.0% | |
| AGAGCAATTAACACAACAGA+TGG | + | chr5.2:17314675-17314694 | MS.gene82123:CDS | 35.0% | |
| AGCATCAGACCATACAATTA+AGG | - | chr5.2:17313159-17313178 | None:intergenic | 35.0% | |
| ATCTCAAGAGTTGCATCTTT+AGG | - | chr5.2:17313334-17313353 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | + | chr5.2:17314473-17314492 | MS.gene82123:CDS | 35.0% | |
| CAAAACTGACTACTAAGGTA+AGG | - | chr5.2:17313856-17313875 | None:intergenic | 35.0% | |
| CAACACAAAACTGACTACTA+AGG | - | chr5.2:17313861-17313880 | None:intergenic | 35.0% | |
| CAAGAAAATGTGGTTGAAGA+GGG | + | chr5.2:17311874-17311893 | MS.gene82123:CDS | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | - | chr5.2:17313304-17313323 | None:intergenic | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | - | chr5.2:17314192-17314211 | None:intergenic | 35.0% | |
| TAGATGCAGTAGAAATGACA+GGG | - | chr5.2:17311477-17311496 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGAAAGCT+CGG | - | chr5.2:17311685-17311704 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | - | chr5.2:17314811-17314830 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | - | chr5.2:17312685-17312704 | None:intergenic | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | - | chr5.2:17314666-17314685 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | - | chr5.2:17314213-17314232 | None:intergenic | 35.0% | |
| TTGCTCTTTCCATTAGGTTT+CGG | - | chr5.2:17311385-17311404 | None:intergenic | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr5.2:17312644-17312663 | MS.gene82123:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | + | chr5.2:17314719-17314738 | MS.gene82123:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr5.2:17312151-17312170 | MS.gene82123:CDS | 35.0% |
| ! | CTTCAACCACATTTTCTTGT+TGG | - | chr5.2:17311873-17311892 | None:intergenic | 35.0% |
| ! | GTAGGAATAGCTAAGAGTAT+TGG | + | chr5.2:17313095-17313114 | MS.gene82123:intron | 35.0% |
| ! | TCAACCACATTTTCTTGTTG+GGG | - | chr5.2:17311871-17311890 | None:intergenic | 35.0% |
| ! | TTGGAAGATATATGGTGATG+TGG | + | chr5.2:17312128-17312147 | MS.gene82123:CDS | 35.0% |
| !! | AGAGTATTGGCTCCAAAAAT+TGG | + | chr5.2:17313108-17313127 | MS.gene82123:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | - | chr5.2:17314587-17314606 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGGGAAAAAGG+TGG | - | chr5.2:17311769-17311788 | None:intergenic | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | + | chr5.2:17313666-17313685 | MS.gene82123:intron | 35.0% |
| !! | CTTAGTAGTCAGTTTTGTGT+TGG | + | chr5.2:17313859-17313878 | MS.gene82123:intron | 35.0% |
| !! | GAGTATTGGCTCCAAAAATT+GGG | + | chr5.2:17313109-17313128 | MS.gene82123:intron | 35.0% |
| !! | TTTGTTGTTGGGAAAAAGGT+GGG | - | chr5.2:17311768-17311787 | None:intergenic | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr5.2:17312803-17312822 | MS.gene82123:intron | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr5.2:17311818-17311837 | None:intergenic | 35.0% |
| AAATATCCAGGATGTACTGG+AGG | - | chr5.2:17311628-17311647 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | - | chr5.2:17311627-17311646 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr5.2:17312272-17312291 | MS.gene82123:intron | 40.0% | |
| ACAATTAAGGCAGTAGGTTC+TGG | - | chr5.2:17313146-17313165 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | - | chr5.2:17314443-17314462 | None:intergenic | 40.0% | |
| ATAGTGCACAGACCACAATT+CGG | - | chr5.2:17312872-17312891 | None:intergenic | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | - | chr5.2:17314377-17314396 | None:intergenic | 40.0% | |
| CAATTAAGGCAGTAGGTTCT+GGG | - | chr5.2:17313145-17313164 | None:intergenic | 40.0% | |
| CCAAAATATCCAGGATGTAC+TGG | - | chr5.2:17311631-17311650 | None:intergenic | 40.0% | |
| CCAATTGATCAAAGATAGGC+GGG | - | chr5.2:17312422-17312441 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | - | chr5.2:17311934-17311953 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | + | chr5.2:17314586-17314605 | MS.gene82123:CDS | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | + | chr5.2:17311384-17311403 | MS.gene82123:CDS | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | - | chr5.2:17313752-17313771 | None:intergenic | 40.0% | |
| GACCATACAATTAAGGCAGT+AGG | - | chr5.2:17313152-17313171 | None:intergenic | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | - | chr5.2:17311933-17311952 | None:intergenic | 40.0% | |
| GTAGATGCAGTAGAAATGAC+AGG | - | chr5.2:17311478-17311497 | None:intergenic | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | + | chr5.2:17314593-17314612 | MS.gene82123:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | + | chr5.2:17314729-17314748 | MS.gene82123:CDS | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr5.2:17312271-17312290 | MS.gene82123:intron | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | - | chr5.2:17313813-17313832 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr5.2:17311976-17311995 | None:intergenic | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | - | chr5.2:17313800-17313819 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | - | chr5.2:17313645-17313664 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | + | chr5.2:17313800-17313819 | MS.gene82123:intron | 40.0% | |
| ! | ATTGGCTCCAAAAATTGGGT+GGG | + | chr5.2:17313113-17313132 | MS.gene82123:intron | 40.0% |
| ! | CAGATTTTTGCCTTGCAAAC+CGG | + | chr5.2:17312059-17312078 | MS.gene82123:intron | 40.0% |
| ! | CCAGTACATCCTGGATATTT+TGG | + | chr5.2:17311628-17311647 | MS.gene82123:CDS | 40.0% |
| ! | CTTGTCGTATCTCTCACTTT+TGG | + | chr5.2:17312768-17312787 | MS.gene82123:intron | 40.0% |
| ! | GACATTTCCCACCCAATTTT+TGG | - | chr5.2:17313123-17313142 | None:intergenic | 40.0% |
| ! | TGTGGTAAGCTTTAGCTCAA+GGG | + | chr5.2:17312922-17312941 | MS.gene82123:intron | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr5.2:17312157-17312176 | MS.gene82123:CDS | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | - | chr5.2:17311730-17311749 | None:intergenic | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | - | chr5.2:17314588-17314607 | None:intergenic | 40.0% |
| !! | CGGATTTGTTGTTGGGAAAA+AGG | - | chr5.2:17311772-17311791 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | - | chr5.2:17311731-17311750 | None:intergenic | 40.0% |
| !! | TATTGGCTCCAAAAATTGGG+TGG | + | chr5.2:17313112-17313131 | MS.gene82123:intron | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr5.2:17311737-17311756 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | + | chr5.2:17314437-17314456 | MS.gene82123:CDS | 40.0% |
| !! | TTGTGGACGGATTTGTTGTT+GGG | - | chr5.2:17311779-17311798 | None:intergenic | 40.0% |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr5.2:17311703-17311722 | None:intergenic | 40.0% |
| !!! | GAAAAAGGTGGGTTTTGTTG+TGG | - | chr5.2:17311757-17311776 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr5.2:17311817-17311836 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr5.2:17311819-17311838 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr5.2:17311845-17311864 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr5.2:17311838-17311857 | None:intergenic | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | + | chr5.2:17314520-17314539 | MS.gene82123:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr5.2:17312656-17312675 | MS.gene82123:intron | 45.0% | |
| ACAACAGATGGCAAGTCAAG+CGG | + | chr5.2:17314687-17314706 | MS.gene82123:CDS | 45.0% | |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr5.2:17311864-17311883 | MS.gene82123:CDS | 45.0% | |
| ACCGGATAAGGGTCAACATT+GGG | - | chr5.2:17314823-17314842 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr5.2:17312528-17312547 | MS.gene82123:CDS | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | + | chr5.2:17314501-17314520 | MS.gene82123:CDS | 45.0% | |
| CAGTAGAAATGACAGGGATC+GGG | - | chr5.2:17311471-17311490 | None:intergenic | 45.0% | |
| CCCGCCTATCTTTGATCAAT+TGG | + | chr5.2:17312419-17312438 | MS.gene82123:CDS | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | + | chr5.2:17312478-17312497 | MS.gene82123:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | - | chr5.2:17312481-17312500 | None:intergenic | 45.0% | |
| CCTTCATCATGACACGTTAG+CGG | + | chr5.2:17313767-17313786 | MS.gene82123:intron | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | + | chr5.2:17312479-17312498 | MS.gene82123:CDS | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr5.2:17311958-17311977 | MS.gene82123:CDS | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | + | chr5.2:17314592-17314611 | MS.gene82123:CDS | 45.0% | |
| CTCTTTCCATTAGGTTTCGG+AGG | - | chr5.2:17311382-17311401 | None:intergenic | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr5.2:17312647-17312666 | MS.gene82123:intron | 45.0% | |
| GAAAATGTGGTTGAAGAGGG+TGG | + | chr5.2:17311877-17311896 | MS.gene82123:CDS | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | - | chr5.2:17313299-17313318 | None:intergenic | 45.0% | |
| GCAGTAGAAATGACAGGGAT+CGG | - | chr5.2:17311472-17311491 | None:intergenic | 45.0% | |
| GCGGTATAATACGCACTTAG+TGG | + | chr5.2:17311420-17311439 | MS.gene82123:CDS | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | - | chr5.2:17314735-17314754 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr5.2:17312382-17312401 | MS.gene82123:CDS | 45.0% | |
| GTAAATGAAAGCTCGGAGGA+AGG | - | chr5.2:17311678-17311697 | None:intergenic | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | + | chr5.2:17314542-17314561 | MS.gene82123:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | + | chr5.2:17314502-17314521 | MS.gene82123:CDS | 45.0% | |
| TACCGGATAAGGGTCAACAT+TGG | - | chr5.2:17314824-17314843 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr5.2:17312361-17312380 | MS.gene82123:CDS | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | + | chr5.2:17313722-17313741 | MS.gene82123:intron | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | - | chr5.2:17314841-17314860 | None:intergenic | 45.0% | |
| TCCCAATGTTGACCCTTATC+CGG | + | chr5.2:17314819-17314838 | MS.gene82123:CDS | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | - | chr5.2:17314564-17314583 | None:intergenic | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | - | chr5.2:17311391-17311410 | None:intergenic | 45.0% | |
| TTGGCACCATACCTCCTTAT+GGG | + | chr5.2:17311647-17311666 | MS.gene82123:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr5.2:17312377-17312396 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | - | chr5.2:17313553-17313572 | None:intergenic | 45.0% | |
| TTTGGCACCATACCTCCTTA+TGG | + | chr5.2:17311646-17311665 | MS.gene82123:CDS | 45.0% | |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr5.2:17311865-17311884 | None:intergenic | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | + | chr5.2:17314528-17314547 | MS.gene82123:CDS | 45.0% |
| ! | GGATGATGAGGATGATGATG+AGG | + | chr5.2:17314852-17314871 | MS.gene82123:CDS | 45.0% |
| ! | GGTATGGTGCCAAAATATCC+AGG | - | chr5.2:17311640-17311659 | None:intergenic | 45.0% |
| ! | GTGTGGTAAGCTTTAGCTCA+AGG | + | chr5.2:17312921-17312940 | MS.gene82123:intron | 45.0% |
| ! | GTTGTTGTTGGGGAACATGT+GGG | - | chr5.2:17311807-17311826 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGGGAACATG+TGG | - | chr5.2:17311808-17311827 | None:intergenic | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+CGG | + | chr5.2:17314410-17314429 | MS.gene82123:intron | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr5.2:17311950-17311969 | MS.gene82123:CDS | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | + | chr5.2:17314436-17314455 | MS.gene82123:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr5.2:17311736-17311755 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | - | chr5.2:17311732-17311751 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr5.2:17311738-17311757 | None:intergenic | 45.0% |
| !! | GTTGCAGCTCATAGTCTTGT+AGG | + | chr5.2:17313077-17313096 | MS.gene82123:intron | 45.0% |
| !! | GTTGTGGACGGATTTGTTGT+TGG | - | chr5.2:17311780-17311799 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr5.2:17311754-17311773 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr5.2:17311753-17311772 | None:intergenic | 45.0% |
| !!! | CATGTGGGTTTTGTTGTGGA+CGG | - | chr5.2:17311792-17311811 | None:intergenic | 45.0% |
| !!! | GGAACATGTGGGTTTTGTTG+TGG | - | chr5.2:17311796-17311815 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr5.2:17311844-17311863 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr5.2:17311846-17311865 | None:intergenic | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | - | chr5.2:17314392-17314411 | None:intergenic | 5.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr5.2:17312510-17312529 | MS.gene82123:CDS | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | + | chr5.2:17314738-17314757 | MS.gene82123:CDS | 50.0% | |
| AATGTGGTTGAAGAGGGTGG+TGG | + | chr5.2:17311880-17311899 | MS.gene82123:CDS | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | - | chr5.2:17313641-17313660 | None:intergenic | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | - | chr5.2:17314600-17314619 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr5.2:17312657-17312676 | MS.gene82123:intron | 50.0% | |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr5.2:17311510-17311529 | MS.gene82123:CDS | 50.0% | |
| ATGAAAGCTCGGAGGAAGGA+AGG | - | chr5.2:17311674-17311693 | None:intergenic | 50.0% | |
| CACACCTTCCCAAGAACACT+TGG | - | chr5.2:17312283-17312302 | None:intergenic | 50.0% | |
| CAGACCAAGTGTTCTTGGGA+AGG | + | chr5.2:17312276-17312295 | MS.gene82123:intron | 50.0% | |
| CCGCTAACGTGTCATGATGA+AGG | - | chr5.2:17313770-17313789 | None:intergenic | 50.0% | |
| CCTCCTCATCTACCGGATAA+GGG | - | chr5.2:17314834-17314853 | None:intergenic | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+TGG | - | chr5.2:17311656-17311675 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr5.2:17312081-17312100 | None:intergenic | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | - | chr5.2:17314599-17314618 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | + | chr5.2:17314840-17314859 | MS.gene82123:CDS | 50.0% | |
| GGTGGTAAATGAAAGCTCGG+AGG | - | chr5.2:17311682-17311701 | None:intergenic | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | - | chr5.2:17314797-17314816 | None:intergenic | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | - | chr5.2:17314835-17314854 | None:intergenic | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr5.2:17311511-17311530 | MS.gene82123:CDS | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+GGG | - | chr5.2:17313291-17313310 | None:intergenic | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | - | chr5.2:17314643-17314662 | None:intergenic | 50.0% | |
| TGACCCTTATCCGGTAGATG+AGG | + | chr5.2:17314828-17314847 | MS.gene82123:CDS | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr5.2:17312376-17312395 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | - | chr5.2:17314798-17314817 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | + | chr5.2:17314547-17314566 | MS.gene82123:CDS | 50.0% | |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr5.2:17311861-17311880 | None:intergenic | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr5.2:17311613-17311632 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr5.2:17311614-17311633 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr5.2:17311700-17311719 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr5.2:17311835-17311854 | None:intergenic | 50.0% |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr5.2:17311862-17311881 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr5.2:17311714-17311733 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr5.2:17312440-17312459 | MS.gene82123:CDS | 50.0% |
| AAATAGCCTCGGCAAGCTGC+CGG | - | chr5.2:17314432-17314451 | None:intergenic | 55.0% | |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr5.2:17312368-17312387 | MS.gene82123:CDS | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr5.2:17312731-17312750 | MS.gene82123:CDS | 55.0% | |
| AGAAAGCGGCCGCATTGGAT+TGG | + | chr5.2:17312396-17312415 | MS.gene82123:CDS | 55.0% | |
| AGACAAGAAAGCGGCCGCAT+TGG | + | chr5.2:17312391-17312410 | MS.gene82123:CDS | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr5.2:17312485-17312504 | MS.gene82123:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+CGG | - | chr5.2:17312408-17312427 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr5.2:17311619-17311638 | MS.gene82123:CDS | 55.0% | |
| CCCTTATCCGGTAGATGAGG+AGG | + | chr5.2:17314831-17314850 | MS.gene82123:CDS | 55.0% | |
| CTCCATGCTCAGATCAGACG+CGG | - | chr5.2:17313897-17313916 | None:intergenic | 55.0% | |
| CTCTGGTGAGGGAAGGAGTT+AGG | - | chr5.2:17313292-17313311 | None:intergenic | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr5.2:17311521-17311540 | MS.gene82123:CDS | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | + | chr5.2:17314546-17314565 | MS.gene82123:CDS | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr5.2:17311395-17311414 | MS.gene82123:CDS | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | - | chr5.2:17311661-17311680 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | - | chr5.2:17311664-17311683 | None:intergenic | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | + | chr5.2:17312513-17312532 | MS.gene82123:CDS | 55.0% | |
| GGGCACATGTAAGTGGGATG+AGG | - | chr5.2:17311607-17311626 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr5.2:17312732-17312751 | None:intergenic | 55.0% | |
| TAGTGTAGCTGCTCCTGCGA+CGG | + | chr5.2:17311555-17311574 | MS.gene82123:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr5.2:17311520-17311539 | MS.gene82123:CDS | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | + | chr5.2:17313633-17313652 | MS.gene82123:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | + | chr5.2:17314766-17314785 | MS.gene82123:CDS | 55.0% | |
| ! | AGGAGCAGCTACACTAGCCT+GGG | - | chr5.2:17311551-17311570 | None:intergenic | 55.0% |
| ! | AGGAGCAGCTGGCTCAGTTT+AGG | + | chr5.2:17314749-17314768 | MS.gene82123:CDS | 55.0% |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | - | chr5.2:17311726-17311745 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr5.2:17311718-17311737 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr5.2:17312492-17312511 | MS.gene82123:CDS | 55.0% |
| !! | ACGCTCGTCGCAGTATTGGT+CGG | - | chr5.2:17312728-17312747 | None:intergenic | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr5.2:17312167-17312186 | MS.gene82123:CDS | 55.0% |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr5.2:17311715-17311734 | None:intergenic | 55.0% |
| AGCCGCGTCTGATCTGAGCA+TGG | + | chr5.2:17313892-17313911 | MS.gene82123:intron | 60.0% | |
| CAGGAGCAGCTACACTAGCC+TGG | - | chr5.2:17311552-17311571 | None:intergenic | 60.0% | |
| CGCGTCTGATCTGAGCATGG+AGG | + | chr5.2:17313895-17313914 | MS.gene82123:intron | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | + | chr5.2:17314629-17314648 | MS.gene82123:CDS | 60.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr5.2:17311401-17311420 | MS.gene82123:CDS | 60.0% | |
| GGCTCAGTTTAGGCAAGCCC+AGG | + | chr5.2:17314759-17314778 | MS.gene82123:CDS | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | + | chr5.2:17314630-17314649 | MS.gene82123:CDS | 60.0% | |
| ! | AGCAGCTACACTAGCCTGGG+AGG | - | chr5.2:17311548-17311567 | None:intergenic | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr5.2:17312500-17312519 | None:intergenic | 60.0% |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr5.2:17311435-17311454 | MS.gene82123:CDS | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr5.2:17312449-17312468 | MS.gene82123:CDS | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr5.2:17312491-17312510 | MS.gene82123:CDS | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGCA+AGG | - | chr5.2:17312072-17312091 | None:intergenic | 60.0% |
| !! | TGAAGAGGGTGGTGGAGAGC+TGG | + | chr5.2:17311888-17311907 | MS.gene82123:CDS | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | - | chr5.2:17314794-17314813 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | - | chr5.2:17314793-17314812 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | - | chr5.2:17314631-17314650 | None:intergenic | 65.0% | |
| GACGGCTTCTGCTCCTGCGA+CGG | + | chr5.2:17311573-17311592 | MS.gene82123:CDS | 65.0% | |
| GTATGACCGGCAGCTTGCCG+AGG | + | chr5.2:17314423-17314442 | MS.gene82123:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | - | chr5.2:17314779-17314798 | None:intergenic | 65.0% | |
| TGAGGAGCAGAAGCCGTCGC+AGG | - | chr5.2:17311589-17311608 | None:intergenic | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | - | chr5.2:17314623-17314642 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | - | chr5.2:17314780-17314799 | None:intergenic | 65.0% | |
| ! | ACACTAGCCTGGGAGGACCC+AGG | - | chr5.2:17311541-17311560 | None:intergenic | 65.0% |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr5.2:17312741-17312760 | MS.gene82123:CDS | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr5.2:17312548-17312567 | MS.gene82123:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr5.2:17312495-17312514 | MS.gene82123:CDS | 65.0% |
| CGTCAGCTCAGGCTGCTGGG+AGG | - | chr5.2:17314620-17314639 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | - | chr5.2:17314624-17314643 | None:intergenic | 70.0% | |
| GCAGGAGCAGAAGCCGTCGC+AGG | - | chr5.2:17311571-17311590 | None:intergenic | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr5.2:17311531-17311550 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | + | chr5.2:17311531-17311550 | MS.gene82123:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17311376 | 17314879 | 17311376 | ID=MS.gene82123 |
| chr5.2 | mRNA | 17311376 | 17314879 | 17311376 | ID=MS.gene82123.t1;Parent=MS.gene82123 |
| chr5.2 | exon | 17311376 | 17311986 | 17311376 | ID=MS.gene82123.t1.exon1;Parent=MS.gene82123.t1 |
| chr5.2 | CDS | 17311376 | 17311986 | 17311376 | ID=cds.MS.gene82123.t1;Parent=MS.gene82123.t1 |
| chr5.2 | exon | 17312062 | 17312188 | 17312062 | ID=MS.gene82123.t1.exon2;Parent=MS.gene82123.t1 |
| chr5.2 | CDS | 17312062 | 17312188 | 17312062 | ID=cds.MS.gene82123.t1;Parent=MS.gene82123.t1 |
| chr5.2 | exon | 17312279 | 17312569 | 17312279 | ID=MS.gene82123.t1.exon3;Parent=MS.gene82123.t1 |
| chr5.2 | CDS | 17312279 | 17312569 | 17312279 | ID=cds.MS.gene82123.t1;Parent=MS.gene82123.t1 |
| chr5.2 | exon | 17312661 | 17312762 | 17312661 | ID=MS.gene82123.t1.exon4;Parent=MS.gene82123.t1 |
| chr5.2 | CDS | 17312661 | 17312762 | 17312661 | ID=cds.MS.gene82123.t1;Parent=MS.gene82123.t1 |
| chr5.2 | exon | 17314418 | 17314879 | 17314418 | ID=MS.gene82123.t1.exon5;Parent=MS.gene82123.t1 |
| chr5.2 | CDS | 17314418 | 17314879 | 17314418 | ID=cds.MS.gene82123.t1;Parent=MS.gene82123.t1 |
| Gene Sequence |
| Protein sequence |
