AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82148


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82148.t1 MTR_8g072000 70.886 395 112 2 1 394 1 393 0.0 603
MS.gene82148.t1 MTR_8g072000 70.886 395 112 2 1 394 32 424 0.0 603
MS.gene82148.t1 MTR_8g072010 66.497 394 130 1 1 394 1 392 0.0 581
MS.gene82148.t1 MTR_5g042650 69.521 397 117 1 1 397 1 393 0.0 576
MS.gene82148.t1 MTR_7g110900 54.098 366 166 1 29 394 52 415 4.04e-157 450
MS.gene82148.t1 MTR_7g110900 52.742 383 175 2 29 411 52 428 7.78e-157 451
MS.gene82148.t1 MTR_1g085620 54.247 365 165 1 29 393 40 402 2.89e-155 445
MS.gene82148.t1 MTR_7g111280 53.973 365 166 1 29 393 56 418 2.58e-151 436
MS.gene82148.t1 MTR_4g124320 53.699 365 167 1 29 393 58 420 2.72e-149 431
MS.gene82148.t1 MTR_1g085070 52.406 374 160 3 22 394 46 402 5.58e-147 424
MS.gene82148.t1 MTR_1g101000 52.291 371 174 2 28 395 38 408 4.30e-145 420
MS.gene82148.t1 MTR_1g101000 52.291 371 174 2 28 395 38 408 7.01e-145 420
MS.gene82148.t1 MTR_1g101020 51.359 368 176 2 28 392 38 405 9.91e-142 411
MS.gene82148.t1 MTR_7g060760 46.575 365 191 1 29 393 57 417 1.09e-132 388
MS.gene82148.t1 MTR_1g101000 52.836 335 155 2 28 359 38 372 5.53e-129 378
MS.gene82148.t1 MTR_1g085620 52.843 299 139 1 95 393 1 297 1.92e-122 358
MS.gene82148.t1 MTR_4g124320 57.769 251 104 1 29 279 58 306 6.10e-108 322
MS.gene82148.t1 MTR_7g006750 57.025 121 46 1 149 263 440 560 3.77e-38 147
MS.gene82148.t1 MTR_1g036590 53.165 79 37 0 213 291 272 350 3.30e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82148.t1 AT4G19420 68.608 395 122 1 5 399 3 395 0.0 597
MS.gene82148.t1 AT4G19420 68.608 395 122 1 5 399 3 395 0.0 597
MS.gene82148.t1 AT4G19420 63.023 430 122 2 5 399 3 430 0.0 581
MS.gene82148.t1 AT4G19410 60.428 374 147 1 16 388 11 384 7.48e-179 504
MS.gene82148.t1 AT5G45280 57.292 384 158 3 9 388 3 384 1.71e-173 491
MS.gene82148.t1 AT4G19410 60.224 357 142 0 16 372 11 367 1.36e-168 483
MS.gene82148.t1 AT5G26670 56.011 366 159 1 29 394 53 416 2.31e-158 454
MS.gene82148.t1 AT3G62060 54.933 375 166 2 21 394 47 419 5.08e-157 450
MS.gene82148.t1 AT3G62060 54.667 375 167 2 21 394 47 419 3.06e-156 450
MS.gene82148.t1 AT3G05910 54.918 366 162 2 29 394 53 415 2.98e-154 443
MS.gene82148.t1 AT2G46930 53.005 366 170 1 29 394 53 416 3.08e-153 441
MS.gene82148.t1 AT1G57590 54.098 366 166 1 29 394 80 443 4.05e-152 439
MS.gene82148.t1 AT5G45280 59.672 305 118 2 9 310 3 305 1.41e-140 407
MS.gene82148.t1 AT5G23870 47.236 398 201 5 4 392 5 402 6.78e-137 399
MS.gene82148.t1 AT5G23870 47.236 398 201 5 4 392 5 402 6.78e-137 399
MS.gene82148.t1 AT5G23870 47.236 398 201 5 4 392 5 402 9.32e-137 399
MS.gene82148.t1 AT5G23870 47.236 398 201 5 4 392 5 402 2.24e-136 399
MS.gene82148.t1 AT1G09550 50.872 344 166 2 29 372 42 382 1.51e-132 387
MS.gene82148.t1 AT3G09410 47.814 366 190 1 29 393 61 426 2.32e-132 388
MS.gene82148.t1 AT4G19420 70.204 245 71 1 5 249 3 245 6.62e-129 374
MS.gene82148.t1 AT5G26670 55.000 300 133 1 95 394 1 298 4.15e-125 365
MS.gene82148.t1 AT5G26670 55.000 300 133 1 95 394 1 298 4.15e-125 365
MS.gene82148.t1 AT5G26670 55.000 300 133 1 95 394 1 298 4.15e-125 365
MS.gene82148.t1 AT3G09405 44.321 361 198 2 29 388 51 409 4.13e-117 348
MS.gene82148.t1 AT3G09410 47.112 329 173 1 29 356 61 389 5.60e-115 342
MS.gene82148.t1 AT3G05910 58.065 248 101 2 29 276 53 297 5.46e-104 311
MS.gene82148.t1 AT3G09405 44.040 302 166 2 88 388 3 302 3.05e-96 291

Find 76 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACCTTGTTTGATAGTTT+TGG 0.195327 5.2:+16948114 None:intergenic
ATGGTTAAAGTTAAATATTC+TGG 0.238682 5.2:-16951192 MS.gene82148:CDS
TACCATTTAGATAGGGGATT+TGG 0.285592 5.2:-16950690 MS.gene82148:CDS
TTCCAAATCCCCTATCTAAA+TGG 0.292952 5.2:+16950688 None:intergenic
GGTAAGGACAATCTATCTTA+TGG 0.307887 5.2:+16948568 None:intergenic
TGCAGTTATGGAAGATTTGC+TGG 0.318102 5.2:-16950104 MS.gene82148:CDS
CACCAGCTTACCATTTAGAT+AGG 0.372207 5.2:-16950698 MS.gene82148:CDS
ACCGATACGTCTTGCGAGAA+AGG 0.388612 5.2:+16950491 None:intergenic
CATTTCACTTTAGCTCCTCT+TGG 0.394413 5.2:+16949904 None:intergenic
GTTATTTAAAATTCCTGAAA+AGG 0.396090 5.2:+16950435 None:intergenic
TGCAGCTGATGAAGTTCCTT+TGG 0.403879 5.2:+16948158 None:intergenic
AAATATTCTGGTGTTTGTAC+TGG 0.409501 5.2:-16951180 MS.gene82148:CDS
AGAGTCTATGAACATTCCTT+TGG 0.414577 5.2:+16948925 None:intergenic
GTTAACAGAAGGGATGTATC+TGG 0.420364 5.2:-16949761 MS.gene82148:intron
TTAGATAGGGGATTTGGAAC+AGG 0.432017 5.2:-16950684 MS.gene82148:CDS
CCCCTATCTAAATGGTAAGC+TGG 0.447683 5.2:+16950696 None:intergenic
AGTCTTGAAGTGCATGATCT+AGG 0.448651 5.2:+16949524 None:intergenic
CTACAATTGGAACAGAATCA+AGG 0.450624 5.2:-16950311 MS.gene82148:CDS
GCCTTTCTCGCAAGACGTAT+CGG 0.457301 5.2:-16950492 MS.gene82148:CDS
ATGTTCCTTGCATTTCAGTT+TGG 0.458452 5.2:+16948888 None:intergenic
CTACAACAGGCTATTATCTC+AGG 0.458717 5.2:-16949985 MS.gene82148:intron
GTTAGGTTCATCTAAGCATA+TGG 0.460202 5.2:-16950470 MS.gene82148:CDS
CTCAAGAGTGCGGTATCAAA+AGG 0.465683 5.2:-16951116 MS.gene82148:CDS
TAGTAGTGACTCTCCATCAT+TGG 0.466285 5.2:-16948861 MS.gene82148:CDS
CAGTTGGTTAGTTCAATTTG+AGG 0.473805 5.2:-16950655 MS.gene82148:intron
GAATTGTAGATTTCTACAAT+TGG 0.474249 5.2:-16950324 MS.gene82148:intron
ATTTGTGATATAACATATTG+AGG 0.475401 5.2:+16949386 None:intergenic
TCTCGCAAGACGTATCGGTT+AGG 0.476074 5.2:-16950487 MS.gene82148:CDS
ATCTCAGGATGTTCAGCTGG+TGG 0.479723 5.2:-16949970 MS.gene82148:CDS
GCCGCATTCACAAGGAAGAT+TGG 0.480970 5.2:+16949356 None:intergenic
CTTACCGTCTTGGCCAATGA+TGG 0.481283 5.2:+16948848 None:intergenic
ATGGAAGATTTGCTGGCAAA+GGG 0.486962 5.2:-16950097 MS.gene82148:CDS
GAATATTTAACTTTAACCAT+TGG 0.493963 5.2:+16951195 None:intergenic
GCTCACAAACTTACCAGCCT+TGG 0.497601 5.2:+16949497 None:intergenic
TTTGTGATATAACATATTGA+GGG 0.498922 5.2:+16949387 None:intergenic
ATTATCTCAGGATGTTCAGC+TGG 0.500171 5.2:-16949973 MS.gene82148:CDS
ACCAGCTTACCATTTAGATA+GGG 0.500291 5.2:-16950697 MS.gene82148:CDS
CTGCTGATCCTCGTGGACAC+TGG 0.507401 5.2:-16949155 MS.gene82148:CDS
AGCTGATGAAGTTCCTTTGG+TGG 0.511901 5.2:+16948161 None:intergenic
AGTGTGGCTTCTTACCGTCT+TGG 0.513249 5.2:+16948838 None:intergenic
TTCAAGACTCAGTCCAAGGC+TGG 0.518055 5.2:-16949510 MS.gene82148:intron
TTACGCGTTGATAAAGTAAC+CGG 0.521826 5.2:+16949870 None:intergenic
TTGCAAAAGCTGTAGCAGAC+TGG 0.525590 5.2:-16948611 MS.gene82148:CDS
CTCTCCATCATTGGCCAAGA+CGG 0.529374 5.2:-16948852 MS.gene82148:intron
TATGGAAGATTTGCTGGCAA+AGG 0.533137 5.2:-16950098 MS.gene82148:CDS
TTAAGGGCATTGACTGCTGT+AGG 0.537327 5.2:-16948959 MS.gene82148:CDS
CCACGAGGATCAGCAGCTCC+CGG 0.537672 5.2:+16949162 None:intergenic
AACAGGAGACAGTTTAATCC+AGG 0.539572 5.2:-16950415 MS.gene82148:intron
CCAGCTTACCATTTAGATAG+GGG 0.540002 5.2:-16950696 MS.gene82148:CDS
TTGGAACAGGAATTAACAGT+TGG 0.547070 5.2:-16950671 MS.gene82148:CDS
ACCAATCTTCCTTGTGAATG+CGG 0.548127 5.2:-16949357 MS.gene82148:CDS
GTGAAATGCCTCTCAGATGC+CGG 0.552096 5.2:-16949889 MS.gene82148:CDS
TGAATGCGGCATACGACTCA+TGG 0.554322 5.2:-16949343 MS.gene82148:CDS
CAACTCGGATTGCAAGGGTA+AGG 0.564647 5.2:+16948552 None:intergenic
GCACTCTTGAGTAAAGTGAT+TGG 0.568437 5.2:+16951128 None:intergenic
TGCGGCATACGACTCATGGC+AGG 0.571149 5.2:-16949339 MS.gene82148:intron
TCTCAGGATGTTCAGCTGGT+GGG 0.573812 5.2:-16949969 MS.gene82148:CDS
ATTGACTGCTTCCACATCAC+CGG 0.575655 5.2:+16950261 None:intergenic
GTTTGTACTGGTATTGCTGA+AGG 0.583325 5.2:-16951168 MS.gene82148:CDS
GTAACTAAGTTGCACTTCAG+AGG 0.593861 5.2:-16950142 MS.gene82148:CDS
AGTCGTATGCCGCATTCACA+AGG 0.594968 5.2:+16949348 None:intergenic
CACTGCCAAACTGAAATGCA+AGG 0.595547 5.2:-16948893 MS.gene82148:CDS
GTATTGCTGAAGGTAGAAGC+TGG 0.595965 5.2:-16951158 MS.gene82148:CDS
CTATCTAAATGGTAAGCTGG+TGG 0.599663 5.2:+16950699 None:intergenic
AAACTGAAATGCAAGGAACA+TGG 0.604137 5.2:-16948886 MS.gene82148:CDS
GCACTTCAAGACTCAGTCCA+AGG 0.614843 5.2:-16949514 MS.gene82148:CDS
AGAACACAAGATTAAGCCAA+TGG 0.614911 5.2:-16951211 MS.gene82148:CDS
GTAGGAAACTCTACATCCAA+AGG 0.616333 5.2:-16948941 MS.gene82148:CDS
CCGGGAGCTGCTGATCCTCG+TGG 0.625720 5.2:-16949162 MS.gene82148:CDS
AGTGCGGTATCAAAAGGAGC+CGG 0.625776 5.2:-16951110 MS.gene82148:intron
AATCAACTAGATCTAATGCA+AGG 0.629815 5.2:-16949096 MS.gene82148:intron
ATCAAGGTTAGATATTGTGA+CGG 0.630613 5.2:-16950295 MS.gene82148:CDS
CAGCTGTGCCAGTGTCCACG+AGG 0.670610 5.2:+16949147 None:intergenic
TTTGAACCACAAGAAAACCC+AGG 0.673553 5.2:-16948516 MS.gene82148:CDS
TAAAGTAACCGGCATCTGAG+AGG 0.680860 5.2:+16949881 None:intergenic
AATCACTTTACTCAAGAGTG+CGG 0.706525 5.2:-16951126 MS.gene82148:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATTATTAGAACAAAAAT+TGG + chr5.2:16948887-16948906 None:intergenic 15.0%
!! ATATAAATGCTATGTATATA+TGG + chr5.2:16950772-16950791 None:intergenic 15.0%
!! CAATTATTAGAACAAAAATT+GGG + chr5.2:16948886-16948905 None:intergenic 15.0%
!! GAATCAAATACAATTATTTA+AGG + chr5.2:16949442-16949461 None:intergenic 15.0%
!!! ATTTCAATTTCAATTTTGTT+AGG - chr5.2:16948689-16948708 MS.gene82148:intron 15.0%
!!! TAAGTTTTAACAAAATTCAA+AGG - chr5.2:16949000-16949019 MS.gene82148:intron 15.0%
!!! TTTCAATTTCAATTTTGTTA+GGG - chr5.2:16948690-16948709 MS.gene82148:intron 15.0%
!! ATGGTTAAAGTTAAATATTC+TGG - chr5.2:16948042-16948061 MS.gene82148:intron 20.0%
!! ATTTGTATATTGGAAATGAA+TGG + chr5.2:16951182-16951201 None:intergenic 20.0%
!! ATTTGTGATATAACATATTG+AGG + chr5.2:16949851-16949870 None:intergenic 20.0%
!! TCAAAACACTAATTTATTGA+TGG + chr5.2:16948626-16948645 None:intergenic 20.0%
!! TCTTATAAAACCACAATTAT+TGG - chr5.2:16950802-16950821 MS.gene82148:intron 20.0%
!! TTTATCAAGCTATGAATATA+AGG - chr5.2:16950873-16950892 MS.gene82148:intron 20.0%
!! TTTGTGATATAACATATTGA+GGG + chr5.2:16949850-16949869 None:intergenic 20.0%
!!! AAAATCAGACTAGAATATTT+TGG + chr5.2:16949649-16949668 None:intergenic 20.0%
!!! AAAGTATCATTCAAATGAAA+AGG + chr5.2:16949602-16949621 None:intergenic 20.0%
!!! AAGAATTTTTAATGCAGTTA+TGG - chr5.2:16949118-16949137 MS.gene82148:CDS 20.0%
!!! CTTTAGAACACAATTTTTAA+GGG - chr5.2:16950259-16950278 MS.gene82148:CDS 20.0%
!!! GAATATTTAACTTTAACCAT+TGG + chr5.2:16948042-16948061 None:intergenic 20.0%
!!! GTTATTTAAAATTCCTGAAA+AGG + chr5.2:16948802-16948821 None:intergenic 20.0%
!!! TGAATTTTGTTAAAACTTAC+TGG + chr5.2:16948999-16949018 None:intergenic 20.0%
!!! TTGATTTTTATGACAATTCT+TGG - chr5.2:16948642-16948661 MS.gene82148:intron 20.0%
!!! TTTCAGGAATTTTAAATAAC+AGG - chr5.2:16948802-16948821 MS.gene82148:intron 20.0%
!!! TTTGATAGTTTTGGAAAATT+GGG + chr5.2:16951114-16951133 None:intergenic 20.0%
! AAAAAAGGAATTGCAAATGT+AGG + chr5.2:16949777-16949796 None:intergenic 25.0%
! AAATCAAGTAGCAAAAACAT+AGG + chr5.2:16951006-16951025 None:intergenic 25.0%
! AAATTTCATCTGAAAAGAAG+AGG + chr5.2:16949046-16949065 None:intergenic 25.0%
! AATAATATGACGTGTAAATC+AGG - chr5.2:16949070-16949089 MS.gene82148:intron 25.0%
! AATCAAGTAGCAAAAACATA+GGG + chr5.2:16951005-16951024 None:intergenic 25.0%
! AATGCATAAAGTCAGTTATT+CGG + chr5.2:16950583-16950602 None:intergenic 25.0%
! AATTTCATCTGAAAAGAAGA+GGG + chr5.2:16949045-16949064 None:intergenic 25.0%
! ACACAAAATAGTTATATGCT+TGG + chr5.2:16950528-16950547 None:intergenic 25.0%
! ATAAATAACAGCACCAAAAA+AGG + chr5.2:16949792-16949811 None:intergenic 25.0%
! ATATCCAGGTTTCATTAATT+TGG + chr5.2:16949571-16949590 None:intergenic 25.0%
! CTAGTTAAAACCAATAATTG+TGG + chr5.2:16950815-16950834 None:intergenic 25.0%
! GAATTGTAGATTTCTACAAT+TGG - chr5.2:16948910-16948929 MS.gene82148:CDS 25.0%
! TATCCAGGTTTCATTAATTT+GGG + chr5.2:16949570-16949589 None:intergenic 25.0%
! TATTAAGAATATAGTAGCTC+TGG + chr5.2:16950959-16950978 None:intergenic 25.0%
! TTAAGGAACTTCAAAAGATT+AGG + chr5.2:16949425-16949444 None:intergenic 25.0%
!! AATATGTTTCTGTTAACAGA+AGG - chr5.2:16949462-16949481 MS.gene82148:intron 25.0%
!! AATTTCAATTTTGTTAGGGA+GGG - chr5.2:16948694-16948713 MS.gene82148:intron 25.0%
!! ATATGTTTCTGTTAACAGAA+GGG - chr5.2:16949463-16949482 MS.gene82148:intron 25.0%
!! CTTGGAAGATTCTATATTTT+TGG - chr5.2:16948660-16948679 MS.gene82148:intron 25.0%
!! GGAAATCTCATGTTATTTAA+AGG + chr5.2:16949986-16950005 None:intergenic 25.0%
!! TTTTCCAAAACTATCAAACA+AGG - chr5.2:16951116-16951135 MS.gene82148:CDS 25.0%
!!! GCTTTAGAACACAATTTTTA+AGG - chr5.2:16950258-16950277 MS.gene82148:CDS 25.0%
!!! GTTTGATAGTTTTGGAAAAT+TGG + chr5.2:16951115-16951134 None:intergenic 25.0%
!!! TAAATTTTGTGCAGTTTGTT+TGG - chr5.2:16948504-16948523 MS.gene82148:intron 25.0%
!!! TACATTTGCAATTCCTTTTT+TGG - chr5.2:16949776-16949795 MS.gene82148:intron 25.0%
!!! TTTTTTTTCTTCATAACTGC+AGG - chr5.2:16950181-16950200 MS.gene82148:intron 25.0%
AAATATTCTGGTGTTTGTAC+TGG - chr5.2:16948054-16948073 MS.gene82148:intron 30.0%
AACAGACAAACAGAAAAGTA+AGG + chr5.2:16948166-16948185 None:intergenic 30.0%
AATCAACTAGATCTAATGCA+AGG - chr5.2:16950138-16950157 MS.gene82148:CDS 30.0%
ACAGTTTATGACAAGTTCAT+AGG + chr5.2:16948352-16948371 None:intergenic 30.0%
AGGAAAAAAAAACTCCTAAC+CGG + chr5.2:16948146-16948165 None:intergenic 30.0%
ATAACATGAGATTTCCAACA+AGG - chr5.2:16949990-16950009 MS.gene82148:intron 30.0%
ATCAAGGTTAGATATTGTGA+CGG - chr5.2:16948939-16948958 MS.gene82148:CDS 30.0%
ATGAAATGAATCTATACTCC+TGG + chr5.2:16950739-16950758 None:intergenic 30.0%
ATTTACTAGCACAAAATACC+TGG + chr5.2:16948840-16948859 None:intergenic 30.0%
ATTTCATCTGAAAAGAAGAG+GGG + chr5.2:16949044-16949063 None:intergenic 30.0%
CTAGGTACATTTGGATAATT+TGG + chr5.2:16950474-16950493 None:intergenic 30.0%
GCTGTGTTACATTTGTATAT+TGG + chr5.2:16951192-16951211 None:intergenic 30.0%
TAAGCACTTGTGAAAGTTTA+TGG + chr5.2:16948377-16948396 None:intergenic 30.0%
TGAAATGAATCTATACTCCT+GGG + chr5.2:16950738-16950757 None:intergenic 30.0%
TGGCATTAAACAATGAATGA+TGG + chr5.2:16950939-16950958 None:intergenic 30.0%
TTACGGAAAAAAGAATAGTG+TGG + chr5.2:16950415-16950434 None:intergenic 30.0%
TTTCCCAAATTAATGAAACC+TGG - chr5.2:16949564-16949583 MS.gene82148:intron 30.0%
! AGGTATTTTGTGCTAGTAAA+TGG - chr5.2:16948839-16948858 MS.gene82148:intron 30.0%
! ATTTCAATTTTGTTAGGGAG+GGG - chr5.2:16948695-16948714 MS.gene82148:intron 30.0%
! CAATTTCAATTTTGTTAGGG+AGG - chr5.2:16948693-16948712 MS.gene82148:intron 30.0%
! TCCGTCTTTTCTTTCTAATA+GGG - chr5.2:16949671-16949690 MS.gene82148:intron 30.0%
! TTCCGTCTTTTCTTTCTAAT+AGG - chr5.2:16949670-16949689 MS.gene82148:intron 30.0%
! TTTACCATGACTTGATTTTC+AGG - chr5.2:16950236-16950255 MS.gene82148:intron 30.0%
! TTTTCCGTAATCTTTTTCCA+CGG - chr5.2:16950425-16950444 MS.gene82148:CDS 30.0%
!! ATTAAGAACATTTTAGCACC+GGG - chr5.2:16950054-16950073 MS.gene82148:intron 30.0%
!! GATTAAGAACATTTTAGCAC+CGG - chr5.2:16950053-16950072 MS.gene82148:intron 30.0%
!! TAGCTTTAGTAGATTCTGTT+TGG - chr5.2:16948192-16948211 MS.gene82148:intron 30.0%
AAAAGGTCGAAAACATATCC+AGG + chr5.2:16949585-16949604 None:intergenic 35.0%
AAACTGAAATGCAAGGAACA+TGG - chr5.2:16950348-16950367 MS.gene82148:intron 35.0%
AAAGCCTGAAAATCAAGTCA+TGG + chr5.2:16950243-16950262 None:intergenic 35.0%
AATCACTTTACTCAAGAGTG+CGG - chr5.2:16948108-16948127 MS.gene82148:intron 35.0%
ACCAGCTTACCATTTAGATA+GGG - chr5.2:16948537-16948556 MS.gene82148:CDS 35.0%
AGAACACAAGATTAAGCCAA+TGG - chr5.2:16948023-16948042 MS.gene82148:CDS 35.0%
AGAGTCTATGAACATTCCTT+TGG + chr5.2:16950312-16950331 None:intergenic 35.0%
AGCACAATCAAAGTCATGTT+TGG + chr5.2:16948429-16948448 None:intergenic 35.0%
ATGTTCCTTGCATTTCAGTT+TGG + chr5.2:16950349-16950368 None:intergenic 35.0%
CTACAATTGGAACAGAATCA+AGG - chr5.2:16948923-16948942 MS.gene82148:CDS 35.0%
GCCCTATTAGAAAGAAAAGA+CGG + chr5.2:16949675-16949694 None:intergenic 35.0%
GGTAAGGACAATCTATCTTA+TGG + chr5.2:16950669-16950688 None:intergenic 35.0%
GTTAGGTTCATCTAAGCATA+TGG - chr5.2:16948764-16948783 MS.gene82148:intron 35.0%
TACCATTTAGATAGGGGATT+TGG - chr5.2:16948544-16948563 MS.gene82148:CDS 35.0%
TAGAAAAATGACACCACCAA+AGG - chr5.2:16951060-16951079 MS.gene82148:intron 35.0%
TTCCAAATCCCCTATCTAAA+TGG + chr5.2:16948549-16948568 None:intergenic 35.0%
TTGGAACAGGAATTAACAGT+TGG - chr5.2:16948563-16948582 MS.gene82148:CDS 35.0%
TTTCATCTGAAAAGAAGAGG+GGG + chr5.2:16949043-16949062 None:intergenic 35.0%
TTTCTTGTGGTTCAAAAACG+CGG + chr5.2:16950714-16950733 None:intergenic 35.0%
TTTGGGAAATGATCAGAGTT+AGG + chr5.2:16949553-16949572 None:intergenic 35.0%
! AAAACGCGGTTTTTACAACT+CGG + chr5.2:16950700-16950719 None:intergenic 35.0%
! AGTATTTTCATTAGCCCTTC+GGG + chr5.2:16948319-16948338 None:intergenic 35.0%
! CAGTTGGTTAGTTCAATTTG+AGG - chr5.2:16948579-16948598 MS.gene82148:CDS 35.0%
! GAGTATTTTCATTAGCCCTT+CGG + chr5.2:16948320-16948339 None:intergenic 35.0%
! GCTAATCAAATTGCCTTTTC+AGG - chr5.2:16948786-16948805 MS.gene82148:intron 35.0%
! TTACGCGTTGATAAAGTAAC+CGG + chr5.2:16949367-16949386 None:intergenic 35.0%
! TTGATGGCAATCTGTAGAAA+AGG + chr5.2:16948610-16948629 None:intergenic 35.0%
! TTTCAATTTTGTTAGGGAGG+GGG - chr5.2:16948696-16948715 MS.gene82148:intron 35.0%
! TTTTACAACTCGGATTGCAA+GGG + chr5.2:16950690-16950709 None:intergenic 35.0%
! TTTTCATAAGCTTTCCCGAA+GGG - chr5.2:16948302-16948321 MS.gene82148:intron 35.0%
! TTTTTACAACTCGGATTGCA+AGG + chr5.2:16950691-16950710 None:intergenic 35.0%
!! CTCACCTTGTTTGATAGTTT+TGG + chr5.2:16951123-16951142 None:intergenic 35.0%
!! TTTTGTGCAGTTTGTTTGGA+TGG - chr5.2:16948508-16948527 MS.gene82148:intron 35.0%
AACAGGAGACAGTTTAATCC+AGG - chr5.2:16948819-16948838 MS.gene82148:intron 40.0%
ACCAATCTTCCTTGTGAATG+CGG - chr5.2:16949877-16949896 MS.gene82148:CDS 40.0%
AGTCTTGAAGTGCATGATCT+AGG + chr5.2:16949713-16949732 None:intergenic 40.0%
AGTGCAATTTCTTGAGCATC+AGG + chr5.2:16950022-16950041 None:intergenic 40.0%
ATTATCTCAGGATGTTCAGC+TGG - chr5.2:16949261-16949280 MS.gene82148:intron 40.0%
CACCAGCTTACCATTTAGAT+AGG - chr5.2:16948536-16948555 MS.gene82148:CDS 40.0%
CCAAATGTACCTAGATCCAA+CGG - chr5.2:16950480-16950499 MS.gene82148:CDS 40.0%
CCAGAACTTGTAACTACAAC+AGG - chr5.2:16949236-16949255 MS.gene82148:intron 40.0%
CCAGCTTACCATTTAGATAG+GGG - chr5.2:16948538-16948557 MS.gene82148:CDS 40.0%
CCTGTTGTAGTTACAAGTTC+TGG + chr5.2:16949239-16949258 None:intergenic 40.0%
CTACAACAGGCTATTATCTC+AGG - chr5.2:16949249-16949268 MS.gene82148:intron 40.0%
CTATCTAAATGGTAAGCTGG+TGG + chr5.2:16948538-16948557 None:intergenic 40.0%
GCACTCTTGAGTAAAGTGAT+TGG + chr5.2:16948109-16948128 None:intergenic 40.0%
GTAACTAAGTTGCACTTCAG+AGG - chr5.2:16949092-16949111 MS.gene82148:intron 40.0%
GTAGGAAACTCTACATCCAA+AGG - chr5.2:16950293-16950312 MS.gene82148:CDS 40.0%
GTGCAATTTCTTGAGCATCA+GGG + chr5.2:16950021-16950040 None:intergenic 40.0%
GTTAACAGAAGGGATGTATC+TGG - chr5.2:16949473-16949492 MS.gene82148:intron 40.0%
TAGTAGTGACTCTCCATCAT+TGG - chr5.2:16950373-16950392 MS.gene82148:intron 40.0%
TCGGGAAAGCTTATGAAAAC+AGG + chr5.2:16948301-16948320 None:intergenic 40.0%
TGCAGTTATGGAAGATTTGC+TGG - chr5.2:16949130-16949149 MS.gene82148:CDS 40.0%
TTTGAACCACAAGAAAACCC+AGG - chr5.2:16950718-16950737 MS.gene82148:CDS 40.0%
! CATTTCACTTTAGCTCCTCT+TGG + chr5.2:16949333-16949352 None:intergenic 40.0%
! GTTTGTACTGGTATTGCTGA+AGG - chr5.2:16948066-16948085 MS.gene82148:intron 40.0%
! GTTTTCATAAGCTTTCCCGA+AGG - chr5.2:16948301-16948320 MS.gene82148:intron 40.0%
! TATACTCCTGGGTTTTCTTG+TGG + chr5.2:16950727-16950746 None:intergenic 40.0%
! TTAGATAGGGGATTTGGAAC+AGG - chr5.2:16948550-16948569 MS.gene82148:CDS 40.0%
!! ATGGAAGATTTGCTGGCAAA+GGG - chr5.2:16949137-16949156 MS.gene82148:CDS 40.0%
!! TATGGAAGATTTGCTGGCAA+AGG - chr5.2:16949136-16949155 MS.gene82148:CDS 40.0%
ACTGCACTAAACTTGTGTGC+TGG - chr5.2:16950907-16950926 MS.gene82148:intron 45.0%
AGCACACAAGTTTAGTGCAG+TGG + chr5.2:16950908-16950927 None:intergenic 45.0%
AGCTGATGAAGTTCCTTTGG+TGG + chr5.2:16951076-16951095 None:intergenic 45.0%
ATTGACTGCTTCCACATCAC+CGG + chr5.2:16948976-16948995 None:intergenic 45.0%
CACTGCCAAACTGAAATGCA+AGG - chr5.2:16950341-16950360 MS.gene82148:intron 45.0%
CCCCTATCTAAATGGTAAGC+TGG + chr5.2:16948541-16948560 None:intergenic 45.0%
CCGTTGGATCTAGGTACATT+TGG + chr5.2:16950483-16950502 None:intergenic 45.0%
CTCCTCTTGGAAAAAGAGCT+CGG + chr5.2:16949320-16949339 None:intergenic 45.0%
CTGCACTAAACTTGTGTGCT+GGG - chr5.2:16950908-16950927 MS.gene82148:intron 45.0%
CTGCAGAGTCGTTAGATTCA+AGG - chr5.2:16950448-16950467 MS.gene82148:CDS 45.0%
GCAGCCGTGGAAAAAGATTA+CGG + chr5.2:16950432-16950451 None:intergenic 45.0%
GTATTGCTGAAGGTAGAAGC+TGG - chr5.2:16948076-16948095 MS.gene82148:intron 45.0%
TAAAGTAACCGGCATCTGAG+AGG + chr5.2:16949356-16949375 None:intergenic 45.0%
TATGCTTGGATTCTTTGCCG+CGG + chr5.2:16950514-16950533 None:intergenic 45.0%
TGCAGCTGATGAAGTTCCTT+TGG + chr5.2:16951079-16951098 None:intergenic 45.0%
TTGCAAAAGCTGTAGCAGAC+TGG - chr5.2:16950623-16950642 MS.gene82148:intron 45.0%
! AATTTTGTTAGGGAGGGGGA+TGG - chr5.2:16948700-16948719 MS.gene82148:intron 45.0%
! CTCAAGAGTGCGGTATCAAA+AGG - chr5.2:16948118-16948137 MS.gene82148:intron 45.0%
! TGTGACGGTTCGTCTTTTAC+CGG - chr5.2:16948954-16948973 MS.gene82148:CDS 45.0%
! TTCCGAGCTCTTTTTCCAAG+AGG - chr5.2:16949315-16949334 MS.gene82148:intron 45.0%
! TTCGTCTTTTACCGGTGATG+TGG - chr5.2:16948962-16948981 MS.gene82148:CDS 45.0%
!! TTAAGGGCATTGACTGCTGT+AGG - chr5.2:16950275-16950294 MS.gene82148:CDS 45.0%
ACCGATACGTCTTGCGAGAA+AGG + chr5.2:16948746-16948765 None:intergenic 50.0%
AGTCGTATGCCGCATTCACA+AGG + chr5.2:16949889-16949908 None:intergenic 50.0%
AGTGCGGTATCAAAAGGAGC+CGG - chr5.2:16948124-16948143 MS.gene82148:CDS 50.0%
AGTGTGGCTTCTTACCGTCT+TGG + chr5.2:16950399-16950418 None:intergenic 50.0%
ATCTCAGGATGTTCAGCTGG+TGG - chr5.2:16949264-16949283 MS.gene82148:intron 50.0%
CAACTCGGATTGCAAGGGTA+AGG + chr5.2:16950685-16950704 None:intergenic 50.0%
CTCTCCATCATTGGCCAAGA+CGG - chr5.2:16950382-16950401 MS.gene82148:intron 50.0%
CTTACCGTCTTGGCCAATGA+TGG + chr5.2:16950389-16950408 None:intergenic 50.0%
GCACTTCAAGACTCAGTCCA+AGG - chr5.2:16949720-16949739 MS.gene82148:CDS 50.0%
GCCGCATTCACAAGGAAGAT+TGG + chr5.2:16949881-16949900 None:intergenic 50.0%
GCCTTTCTCGCAAGACGTAT+CGG - chr5.2:16948742-16948761 MS.gene82148:intron 50.0%
GCTCACAAACTTACCAGCCT+TGG + chr5.2:16949740-16949759 None:intergenic 50.0%
GGTATCAAAAGGAGCCGGTT+AGG - chr5.2:16948129-16948148 MS.gene82148:CDS 50.0%
GTGAAATGCCTCTCAGATGC+CGG - chr5.2:16949345-16949364 MS.gene82148:CDS 50.0%
TCTCAGGATGTTCAGCTGGT+GGG - chr5.2:16949265-16949284 MS.gene82148:intron 50.0%
TGAATGCGGCATACGACTCA+TGG - chr5.2:16949891-16949910 MS.gene82148:CDS 50.0%
TTCAAGACTCAGTCCAAGGC+TGG - chr5.2:16949724-16949743 MS.gene82148:CDS 50.0%
! GCATCAGGGAAAAGCCTTGT+TGG + chr5.2:16950007-16950026 None:intergenic 50.0%
!! TCTCGCAAGACGTATCGGTT+AGG - chr5.2:16948747-16948766 MS.gene82148:intron 50.0%
ATCTAACGACTCTGCAGCCG+TGG + chr5.2:16950445-16950464 None:intergenic 55.0%
CTGCTGATCCTCGTGGACAC+TGG - chr5.2:16950079-16950098 MS.gene82148:CDS 60.0%
GCTGCAGAGCCGTTGGATCT+AGG + chr5.2:16950492-16950511 None:intergenic 60.0%
TGCGGCATACGACTCATGGC+AGG - chr5.2:16949895-16949914 MS.gene82148:CDS 60.0%
ATCCAACGGCTCTGCAGCCG+CGG - chr5.2:16950494-16950513 MS.gene82148:CDS 65.0%
CAGCTGTGCCAGTGTCCACG+AGG + chr5.2:16950090-16950109 None:intergenic 65.0%
CCACGAGGATCAGCAGCTCC+CGG + chr5.2:16950075-16950094 None:intergenic 65.0%
CCGGGAGCTGCTGATCCTCG+TGG - chr5.2:16950072-16950091 MS.gene82148:intron 70.0%
TGCCGCGGCTGCAGAGCCGT+TGG + chr5.2:16950499-16950518 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 16948019 16951237 16948019 ID=MS.gene82148
chr5.2 mRNA 16948019 16951237 16948019 ID=MS.gene82148.t1;Parent=MS.gene82148
chr5.2 exon 16951111 16951237 16951111 ID=MS.gene82148.t1.exon1;Parent=MS.gene82148.t1
chr5.2 CDS 16951111 16951237 16951111 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16950656 16950738 16950656 ID=MS.gene82148.t1.exon2;Parent=MS.gene82148.t1
chr5.2 CDS 16950656 16950738 16950656 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16950416 16950545 16950416 ID=MS.gene82148.t1.exon3;Parent=MS.gene82148.t1
chr5.2 CDS 16950416 16950545 16950416 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16950258 16950337 16950258 ID=MS.gene82148.t1.exon4;Parent=MS.gene82148.t1
chr5.2 CDS 16950258 16950337 16950258 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16950078 16950164 16950078 ID=MS.gene82148.t1.exon5;Parent=MS.gene82148.t1
chr5.2 CDS 16950078 16950164 16950078 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16949874 16949998 16949874 ID=MS.gene82148.t1.exon6;Parent=MS.gene82148.t1
chr5.2 CDS 16949874 16949998 16949874 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16949715 16949775 16949715 ID=MS.gene82148.t1.exon7;Parent=MS.gene82148.t1
chr5.2 CDS 16949715 16949775 16949715 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16949511 16949564 16949511 ID=MS.gene82148.t1.exon8;Parent=MS.gene82148.t1
chr5.2 CDS 16949511 16949564 16949511 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16949340 16949417 16949340 ID=MS.gene82148.t1.exon9;Parent=MS.gene82148.t1
chr5.2 CDS 16949340 16949417 16949340 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16949097 16949202 16949097 ID=MS.gene82148.t1.exon10;Parent=MS.gene82148.t1
chr5.2 CDS 16949097 16949202 16949097 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16948853 16948998 16948853 ID=MS.gene82148.t1.exon11;Parent=MS.gene82148.t1
chr5.2 CDS 16948853 16948998 16948853 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16948515 16948637 16948515 ID=MS.gene82148.t1.exon12;Parent=MS.gene82148.t1
chr5.2 CDS 16948515 16948637 16948515 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16948119 16948193 16948119 ID=MS.gene82148.t1.exon13;Parent=MS.gene82148.t1
chr5.2 CDS 16948119 16948193 16948119 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
chr5.2 exon 16948019 16948045 16948019 ID=MS.gene82148.t1.exon14;Parent=MS.gene82148.t1
chr5.2 CDS 16948019 16948045 16948019 ID=cds.MS.gene82148.t1;Parent=MS.gene82148.t1
Gene Sequence

>MS.gene82148

ATGAAGAACACAAGATTAAGCCAATGGTTAAAGTTAAATATTCTGGTGTTTGTACTGGTATTGCTGAAGGTAGAAGCTGGTTATGTACCAATCACTTTACTCAAGAGTGCGGTATCAAAAGGAGCCGGTTAGGAGTTTTTTTTTCCTTACTTTTCTGTTTGTCTGTTCATAGTTAGCTTTAGTAGATTCTGTTTGGCTAAACAATTTAATTAAGAGTGCTTATGTATAAGTTATTTCTATAACAAAAGATCAAATAAAGTTAAACTGTTTTTTGCATAACCTGTTTTCATAAGCTTTCCCGAAGGGCTAATGAAAATACTCTGAAAACAGCCTATGAACTTGTCATAAACTGTTTCCATAAACTTTCACAAGTGCTTATACTAGTAGATATGCTAAAATAAATCAATCCAAACATGACTTTGATTGTGCTATTCAACTCATGTCTACTATTTTTATTGATGTTTATAATTGAGAAATTGAAAATTTAAATTTTGTGCAGTTTGTTTGGATGGTAGTCCACCAGCTTACCATTTAGATAGGGGATTTGGAACAGGAATTAACAGTTGGTTAGTTCAATTTGAGGTTTGTCCTTTTCTACAGATTGCCATCAATAAATTAGTGTTTTGATTTTTATGACAATTCTTGGAAGATTCTATATTTTTGGTGATGAATTTCAATTTCAATTTTGTTAGGGAGGGGGATGGTGCAATAATGTCACTACTTGCCTTTCTCGCAAGACGTATCGGTTAGGTTCATCTAAGCATATGGCTAATCAAATTGCCTTTTCAGGAATTTTAAATAACAGGAGACAGTTTAATCCAGGTATTTTGTGCTAGTAAATGGATCTTGTTTCTCTTCATGAATCCCAATTTTTGTTCTAATAATTGTTGTGAATTGTAGATTTCTACAATTGGAACAGAATCAAGGTTAGATATTGTGACGGTTCGTCTTTTACCGGTGATGTGGAAGCAGTCAATCCAGTAAGTTTTAACAAAATTCAAAGGAATTTACTTCTTTTTTTCCCCCTCTTCTTTTCAGATGAAATTTTAATAATAATATGACGTGTAAATCAGGTAACTAAGTTGCACTTCAGAGGAGCAAGAATTTTTAATGCAGTTATGGAAGATTTGCTGGCAAAGGGAATGAAAAATGCTAAAAATGTATGACAACATTAATGATTTGAAACTTTTTTTCTTCATTATTTTGTTATTCACTCACCAGAACTTGTAACTACAACAGGCTATTATCTCAGGATGTTCAGCTGGTGGGTTAGCTTCAATACTGCACTGTGATCGCTTCCGAGCTCTTTTTCCAAGAGGAGCTAAAGTGAAATGCCTCTCAGATGCCGGTTACTTTATCAACGCGTAAGCAGTGCATATAATATGCTTCTGAATTTACATTTTCCTAATCTTTTGAAGTTCCTTAAATAATTGTATTTGATTCAATATGTTTCTGTTAACAGAAGGGATGTATCTGGAGCACATCACGTTGAACAGTACTTCACTCAAGTTGTTACAACACATGTAATCTTCCTAACTCTGATCATTTCCCAAATTAATGAAACCTGGATATGTTTTCGACCTTTTCATTTGAATGATACTTTCTGAAGCTTTATTTCGAGTGCGAACCAAAATATTCTAGTCTGATTTTTTTCCGTCTTTTCTTTCTAATAGGGCTCTGCAAAGAATTTGCCTAGATCATGCACTTCAAGACTCAGTCCAAGGCTGGTAAGTTTGTGAGCTATAGTTCTATCTTCCTACATTTGCAATTCCTTTTTTGGTGCTGTTATTTATACTTGTGATTTCTGAACTATTTTGCAGTGCTTTTTCCCTCAATATGTTATATCACAAATCGCTACACCAATCTTCCTTGTGAATGCGGCATACGACTCATGGCAGGTTAGATTACTCTGTTGCTCAATATAAATGAGTTTATTTGACTAGTTATTGATGTTTTTGCTATAACCTTTAAATAACATGAGATTTCCAACAAGGCTTTTCCCTGATGCTCAAGAAATTGCACTGCTTTGATTCAGATTAAGAACATTTTAGCACCGGGAGCTGCTGATCCTCGTGGACACTGGCACAGCTGCAAGTTAGACATAAACAACTGCTCTTCTAATCAACTAGATCTAATGCAAGGTCAATATTCTACTCTTAATTTTTTTTTTCTTCATAACTGCAGGATATTACATTGCAGAATTTATCTAACTTCACTTTTACCATGACTTGATTTTCAGGCTTTAGAACACAATTTTTAAGGGCATTGACTGCTGTAGGAAACTCTACATCCAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACTGAAATGCAAGGAACATGGTTTAGTAGTGACTCTCCATCATTGGCCAAGACGGTAAGAAGCCACACTATTCTTTTTTCCGTAATCTTTTTCCACGGCTGCAGAGTCGTTAGATTCAAGGCCAAATTATCCAAATGTACCTAGATCCAACGGCTCTGCAGCCGCGGCAAAGAATCCAAGCATATAACTATTTTGTGTTGCTTTTGATTTCTTTCATATATCTCATGTAGCCGAATAACTGACTTTATGCATTGCATAACATCTTGCAGAGCATTGCAAAAGCTGTAGCAGACTGGTTTTATGAAAGAAAGCTATTCCATAAGATAGATTGTCCTTACCCTTGCAATCCGAGTTGTAAAAACCGCGTTTTTGAACCACAAGAAAACCCAGGAGTATAGATTCATTTCATCAAAATCAATCCATATATACATAGCATTTATATATTTCATTATTCTTATAAAACCACAATTATTGGTTTTAACTAGTGATTGAATAAGAAAAAGTATATGATTTTTTTTACAAATTTATCAAGCTATGAATATAAGGAAAATTTCGCCACTGCACTAAACTTGTGTGCTGGGCGCTTCCATCATTCATTGTTTAATGCCAGAGCTACTATATTCTTAATAAAAGTATATAGTATATTTTTTTACCCTATGTTTTTGCTACTTGATTTGTAATTGTAAGAGATTTACATGTTGTGTGAATGATAGAAAAATGACACCACCAAAGGAACTTCATCAGCTGCATCAACTATAAAGCCCAATTTTCCAAAACTATCAAACAAGGTGAGTTTAACTGCAGTATTATTCTTCATAGAATAATAAAACCATTCATTTCCAATATACAAATGTAACACAGCAAATCAATGCTTTTAAGTTGAAGTGA

Protein sequence

>MS.gene82148.t1

MKNTRLSQWLKLNILVFVLVLLKVEAGYVPITLLKSAVSKGAVCLDGSPPAYHLDRGFGTGINSWLVQFEGGGWCNNVTTCLSRKTYRLGSSKHMANQIAFSGILNNRRQFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARIFNAVMEDLLAKGMKNAKNAIISGCSAGGLASILHCDRFRALFPRGAKVKCLSDAGYFINARDVSGAHHVEQYFTQVVTTHGSAKNLPRSCTSRLSPRLCFFPQYVISQIATPIFLVNAAYDSWQIKNILAPGAADPRGHWHSCKLDINNCSSNQLDLMQGFRTQFLRALTAVGNSTSKGMFIDSCYAHCQTEMQGTWFSSDSPSLAKTSIAKAVADWFYERKLFHKIDCPYPCNPSCKNRVFEPQENPGKNDTTKGTSSAASTIKPNFPKLSNKQINAFKLK