Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82172.t1 | XP_003605209.1 | 93 | 186 | 13 | 0 | 1 | 186 | 1 | 186 | 1.90E-92 | 348.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82172.t1 | Q9SHC8 | 51.8 | 199 | 64 | 4 | 19 | 186 | 6 | 203 | 1.0e-46 | 188.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82172.t1 | G7JH03 | 93.0 | 186 | 13 | 0 | 1 | 186 | 1 | 186 | 1.4e-92 | 348.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052211 | MS.gene82172 | 0.803407 | 3.54E-49 | -1.69E-46 |
MS.gene05240 | MS.gene82172 | 0.807983 | 3.87E-50 | -1.69E-46 |
MS.gene054146 | MS.gene82172 | 0.811218 | 7.81E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82172.t1 | MTR_4g026620 | 93.011 | 186 | 13 | 0 | 1 | 186 | 1 | 186 | 3.45e-126 | 353 |
MS.gene82172.t1 | MTR_4g026830 | 68.063 | 191 | 52 | 3 | 1 | 185 | 1 | 188 | 1.50e-82 | 244 |
MS.gene82172.t1 | MTR_4g027050 | 59.500 | 200 | 48 | 3 | 19 | 186 | 7 | 205 | 2.46e-76 | 229 |
MS.gene82172.t1 | MTR_4g026650 | 70.423 | 142 | 36 | 1 | 1 | 136 | 1 | 142 | 3.36e-66 | 201 |
MS.gene82172.t1 | MTR_4g026780 | 62.500 | 192 | 63 | 3 | 1 | 186 | 1 | 189 | 8.75e-66 | 201 |
MS.gene82172.t1 | MTR_4g026780 | 57.754 | 187 | 62 | 3 | 1 | 182 | 1 | 175 | 1.29e-64 | 197 |
MS.gene82172.t1 | MTR_0135s0080 | 69.504 | 141 | 38 | 1 | 1 | 136 | 1 | 141 | 1.91e-64 | 196 |
MS.gene82172.t1 | MTR_4g026780 | 57.143 | 210 | 70 | 4 | 1 | 190 | 1 | 210 | 3.52e-64 | 198 |
MS.gene82172.t1 | MTR_4g026780 | 69.504 | 141 | 38 | 1 | 1 | 136 | 1 | 141 | 4.25e-64 | 196 |
MS.gene82172.t1 | MTR_4g026780 | 58.252 | 206 | 66 | 4 | 1 | 186 | 1 | 206 | 6.66e-64 | 197 |
MS.gene82172.t1 | MTR_4g101020 | 48.529 | 204 | 73 | 3 | 15 | 186 | 4 | 207 | 6.77e-60 | 187 |
MS.gene82172.t1 | MTR_5g012420 | 50.000 | 200 | 68 | 3 | 19 | 186 | 9 | 208 | 6.03e-58 | 182 |
MS.gene82172.t1 | MTR_4g118760 | 61.111 | 126 | 49 | 0 | 19 | 144 | 6 | 131 | 3.43e-47 | 156 |
MS.gene82172.t1 | MTR_4g118760 | 61.111 | 126 | 49 | 0 | 19 | 144 | 6 | 131 | 5.47e-47 | 156 |
MS.gene82172.t1 | MTR_5g013320 | 43.429 | 175 | 88 | 2 | 19 | 186 | 7 | 177 | 5.34e-41 | 138 |
MS.gene82172.t1 | MTR_4g026540 | 46.667 | 180 | 81 | 3 | 21 | 185 | 9 | 188 | 1.25e-40 | 137 |
MS.gene82172.t1 | MTR_1g081950 | 49.206 | 126 | 64 | 0 | 19 | 144 | 7 | 132 | 7.03e-35 | 127 |
MS.gene82172.t1 | MTR_4g026730 | 70.690 | 58 | 7 | 1 | 80 | 137 | 78 | 125 | 9.80e-22 | 86.3 |
MS.gene82172.t1 | MTR_5g012420 | 39.706 | 136 | 50 | 3 | 83 | 186 | 1 | 136 | 1.22e-21 | 87.4 |
MS.gene82172.t1 | MTR_0753s0030 | 58.228 | 79 | 30 | 2 | 31 | 106 | 1 | 79 | 1.65e-21 | 84.7 |
MS.gene82172.t1 | MTR_4g026600 | 64.286 | 56 | 19 | 1 | 79 | 134 | 23 | 77 | 8.01e-15 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82172.t1 | AT2G45140 | 53.763 | 186 | 63 | 3 | 19 | 186 | 6 | 186 | 5.35e-63 | 194 |
MS.gene82172.t1 | AT2G45140 | 51.759 | 199 | 64 | 4 | 19 | 186 | 6 | 203 | 1.96e-62 | 194 |
MS.gene82172.t1 | AT3G60600 | 47.248 | 218 | 78 | 5 | 5 | 186 | 4 | 220 | 4.51e-61 | 191 |
MS.gene82172.t1 | AT3G60600 | 55.333 | 150 | 61 | 2 | 5 | 149 | 4 | 152 | 3.87e-55 | 175 |
MS.gene82172.t1 | AT3G60600 | 55.333 | 150 | 61 | 2 | 5 | 149 | 4 | 152 | 6.38e-55 | 174 |
MS.gene82172.t1 | AT4G00170 | 46.231 | 199 | 74 | 4 | 19 | 186 | 7 | 203 | 1.63e-49 | 160 |
MS.gene82172.t1 | AT2G23830 | 56.303 | 119 | 52 | 0 | 19 | 137 | 7 | 125 | 3.70e-45 | 147 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 4.08e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 1.38e-36 | 133 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 4.08e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 1.38e-36 | 133 |
MS.gene82172.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 6.41e-41 | 142 |
MS.gene82172.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 6.41e-41 | 142 |
MS.gene82172.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 6.41e-41 | 142 |
MS.gene82172.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 6.41e-41 | 142 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 7.31e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 2.69e-36 | 133 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 9.91e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 3.29e-22 | 94.0 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 9.91e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 3.29e-22 | 94.0 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 9.91e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 3.29e-22 | 94.0 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 112 | 258 | 9.91e-41 | 145 |
MS.gene82172.t1 | AT1G51270 | 47.727 | 88 | 45 | 1 | 62 | 149 | 2 | 88 | 3.29e-22 | 94.0 |
MS.gene82172.t1 | AT5G47180 | 41.765 | 170 | 98 | 1 | 19 | 187 | 10 | 179 | 1.03e-40 | 137 |
MS.gene82172.t1 | AT5G47180 | 41.765 | 170 | 98 | 1 | 19 | 187 | 10 | 179 | 1.03e-40 | 137 |
MS.gene82172.t1 | AT1G51270 | 48.322 | 149 | 75 | 2 | 1 | 149 | 160 | 306 | 1.41e-40 | 145 |
MS.gene82172.t1 | AT1G51270 | 48.800 | 125 | 63 | 1 | 25 | 149 | 13 | 136 | 4.92e-36 | 133 |
MS.gene82172.t1 | AT1G51270 | 52.800 | 125 | 58 | 1 | 25 | 149 | 13 | 136 | 4.75e-40 | 140 |
MS.gene82172.t1 | AT1G51270 | 51.145 | 131 | 63 | 1 | 19 | 149 | 6 | 135 | 8.08e-40 | 141 |
MS.gene82172.t1 | AT4G00170 | 43.258 | 178 | 68 | 4 | 40 | 186 | 1 | 176 | 3.23e-38 | 131 |
MS.gene82172.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 3.29e-38 | 135 |
MS.gene82172.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 3.29e-38 | 135 |
MS.gene82172.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 3.29e-38 | 135 |
MS.gene82172.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 3.29e-38 | 135 |
MS.gene82172.t1 | AT1G08820 | 50.000 | 142 | 64 | 2 | 19 | 154 | 6 | 146 | 3.29e-38 | 135 |
MS.gene82172.t1 | AT1G51270 | 47.761 | 67 | 34 | 1 | 83 | 149 | 1 | 66 | 1.28e-13 | 68.6 |
Find 31 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAATTTAACAACAGAAAT+TGG | 0.206639 | 4.2:+76533068 | None:intergenic |
CCATAGTTAACTTTGAAATT+TGG | 0.216610 | 4.2:+76531382 | None:intergenic |
ATTTGATTTATTAGATATTC+AGG | 0.245813 | 4.2:-76531603 | MS.gene82172:intron |
AGGTCTACTTGTGATATTAC+AGG | 0.287192 | 4.2:-76532628 | MS.gene82172:intron |
CCAAATTTCAAAGTTAACTA+TGG | 0.289882 | 4.2:-76531382 | MS.gene82172:CDS |
TTGCCAAGATTCTGGATATA+AGG | 0.297610 | 4.2:-76531699 | MS.gene82172:CDS |
TAACAAGTCTGATAATTATC+TGG | 0.360749 | 4.2:-76532808 | MS.gene82172:CDS |
TGAGCTGGTGACGGTGGGTT+AGG | 0.400337 | 4.2:+76531635 | None:intergenic |
TTATCGATGCAATGCATGTT+AGG | 0.402557 | 4.2:+76531864 | None:intergenic |
TATCAGACTTGTTAGACATC+TGG | 0.410398 | 4.2:+76532817 | None:intergenic |
CAACCTTATATCCAGAATCT+TGG | 0.414157 | 4.2:+76531696 | None:intergenic |
TTCCTGAGAAATATTGTGTT+AGG | 0.414467 | 4.2:-76532675 | MS.gene82172:CDS |
TATTGTGTTAGGCCTAATAA+TGG | 0.425729 | 4.2:-76532664 | MS.gene82172:CDS |
TGATAATTATCTGGCTTTCA+AGG | 0.427384 | 4.2:-76532799 | MS.gene82172:intron |
GGCAACACAACTCCATTATT+AGG | 0.451335 | 4.2:+76532652 | None:intergenic |
ATATCTTCTGGGGTTGCACC+AGG | 0.458454 | 4.2:+76531813 | None:intergenic |
GGCCTAACACAATATTTCTC+AGG | 0.461582 | 4.2:+76532673 | None:intergenic |
CATGGAAAGTGTAGCTCTTG+AGG | 0.476067 | 4.2:+76533011 | None:intergenic |
ATGGAAAGTGTAGCTCTTGA+GGG | 0.486542 | 4.2:+76533012 | None:intergenic |
GGTGACGGTGGGTTAGGAGG+AGG | 0.527380 | 4.2:+76531641 | None:intergenic |
TACAATGCAAGCTCAAAAGA+AGG | 0.541868 | 4.2:-76531892 | MS.gene82172:CDS |
CAAAGCATAGTCGCAAAGCC+TGG | 0.544647 | 4.2:-76531831 | MS.gene82172:CDS |
ATAATGGAGTTGTGTTGCCT+AGG | 0.546547 | 4.2:-76532648 | MS.gene82172:CDS |
TCAAATTCTGATGCTTGAGC+TGG | 0.556015 | 4.2:+76531620 | None:intergenic |
GCTGGTGACGGTGGGTTAGG+AGG | 0.558838 | 4.2:+76531638 | None:intergenic |
GATGCTTGAGCTGGTGACGG+TGG | 0.563681 | 4.2:+76531629 | None:intergenic |
GCTCTTGAGGGTGTATCTGA+AGG | 0.583919 | 4.2:+76533024 | None:intergenic |
TCTGATGCTTGAGCTGGTGA+CGG | 0.598495 | 4.2:+76531626 | None:intergenic |
ATGCTTGAGCTGGTGACGGT+GGG | 0.599124 | 4.2:+76531630 | None:intergenic |
GTAATATCACAAGTAGACCT+AGG | 0.632852 | 4.2:+76532631 | None:intergenic |
TCGATGCAATGCATGTTAGG+TGG | 0.713518 | 4.2:+76531867 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTGAATTTTTTATTATTTT+AGG | - | chr4.2:76532931-76532950 | MS.gene82172:intron | 10.0% |
!!! | TATATATTTTTTTGGTTTTT+GGG | + | chr4.2:76531377-76531396 | None:intergenic | 10.0% |
!!! | TTATAATTTTGATTTAGAAA+AGG | - | chr4.2:76531619-76531638 | MS.gene82172:CDS | 10.0% |
!!! | TTATATATTTTTTTGGTTTT+TGG | + | chr4.2:76531378-76531397 | None:intergenic | 10.0% |
!!! | TTCTCATTTATATATTTTTT+TGG | + | chr4.2:76531385-76531404 | None:intergenic | 10.0% |
!!! | TTTTATATATTGTGTTATTT+AGG | - | chr4.2:76531591-76531610 | MS.gene82172:intron | 10.0% |
!! | ATCTTTATAAAAACAAAACA+TGG | - | chr4.2:76531895-76531914 | MS.gene82172:CDS | 15.0% |
!! | TCTTTATAAAAACAAAACAT+GGG | - | chr4.2:76531896-76531915 | MS.gene82172:CDS | 15.0% |
!!! | ATTTGATTTATTAGATATTC+AGG | - | chr4.2:76532740-76532759 | MS.gene82172:intron | 15.0% |
!!! | TATTTTCTTTAACACTTTTT+TGG | - | chr4.2:76531457-76531476 | MS.gene82172:intron | 15.0% |
!! | ATTCAATAAAACGTATCAAT+AGG | + | chr4.2:76532834-76532853 | None:intergenic | 20.0% |
!! | GCACAATATACAATATTAAT+TGG | - | chr4.2:76532800-76532819 | MS.gene82172:CDS | 20.0% |
!! | TATGAGTTATCAATTGTAAA+AGG | - | chr4.2:76532192-76532211 | MS.gene82172:intron | 20.0% |
!! | TTCAATAAAACGTATCAATA+GGG | + | chr4.2:76532833-76532852 | None:intergenic | 20.0% |
!! | TTCAATTTAACAACAGAAAT+TGG | + | chr4.2:76531278-76531297 | None:intergenic | 20.0% |
!!! | ATTCTGTATGTTTTCTTTTA+AGG | - | chr4.2:76533042-76533061 | MS.gene82172:CDS | 20.0% |
!!! | TATATTGTGTTATTTAGGAA+AGG | - | chr4.2:76531596-76531615 | MS.gene82172:intron | 20.0% |
!!! | TCAACTATTTGTTTTTTTAG+AGG | + | chr4.2:76532268-76532287 | None:intergenic | 20.0% |
! | AACAAGACACTAAATGAAAA+AGG | + | chr4.2:76531425-76531444 | None:intergenic | 25.0% |
! | AAGATTTACCATGAAAACAT+TGG | + | chr4.2:76532352-76532371 | None:intergenic | 25.0% |
! | AGAAGATATCACTTCAAAAA+TGG | - | chr4.2:76532544-76532563 | MS.gene82172:intron | 25.0% |
! | CCAAATTTCAAAGTTAACTA+TGG | - | chr4.2:76532961-76532980 | MS.gene82172:intron | 25.0% |
! | TAACAAGTCTGATAATTATC+TGG | - | chr4.2:76531535-76531554 | MS.gene82172:intron | 25.0% |
! | TGAAAGTGAGAATAAAAGAA+CGG | + | chr4.2:76532392-76532411 | None:intergenic | 25.0% |
!! | AAAACAAATAGTTGATGTGT+TGG | - | chr4.2:76532273-76532292 | MS.gene82172:intron | 25.0% |
!! | CACATTTTATCTTGAAGTTT+TGG | - | chr4.2:76533074-76533093 | MS.gene82172:CDS | 25.0% |
!! | GTTTTTATAAAGATAAGCCA+AGG | + | chr4.2:76531889-76531908 | None:intergenic | 25.0% |
!!! | ATTTTTGAAGTGATATCTTC+TGG | + | chr4.2:76532545-76532564 | None:intergenic | 25.0% |
!!! | CCATAGTTAACTTTGAAATT+TGG | + | chr4.2:76532964-76532983 | None:intergenic | 25.0% |
!!! | TTTTTGAAGTGATATCTTCT+GGG | + | chr4.2:76532544-76532563 | None:intergenic | 25.0% |
ATCAATTGAGCTACATTTAC+TGG | - | chr4.2:76532091-76532110 | MS.gene82172:intron | 30.0% | |
ATTTACCATGAAAACATTGG+AGG | + | chr4.2:76532349-76532368 | None:intergenic | 30.0% | |
TATTGTGTTAGGCCTAATAA+TGG | - | chr4.2:76531679-76531698 | MS.gene82172:CDS | 30.0% | |
TTCCTGAGAAATATTGTGTT+AGG | - | chr4.2:76531668-76531687 | MS.gene82172:CDS | 30.0% | |
! | TAGTTTATGTTTGCTGAAAG+TGG | - | chr4.2:76532126-76532145 | MS.gene82172:intron | 30.0% |
! | TTTATCCTCCAATGTTTTCA+TGG | - | chr4.2:76532341-76532360 | MS.gene82172:intron | 30.0% |
!! | TGATAATTATCTGGCTTTCA+AGG | - | chr4.2:76531544-76531563 | MS.gene82172:intron | 30.0% |
!! | TTCTAAAATAGTCTTAGCCT+TGG | - | chr4.2:76531869-76531888 | MS.gene82172:CDS | 30.0% |
!!! | TTTTGAAGTGATATCTTCTG+GGG | + | chr4.2:76532543-76532562 | None:intergenic | 30.0% |
AGATACACACACATTATGTG+TGG | - | chr4.2:76532011-76532030 | MS.gene82172:intron | 35.0% | |
AGGTCTACTTGTGATATTAC+AGG | - | chr4.2:76531715-76531734 | MS.gene82172:intron | 35.0% | |
ATTGAAGAGGCTTAGTTACA+TGG | + | chr4.2:76531353-76531372 | None:intergenic | 35.0% | |
CAACCTTATATCCAGAATCT+TGG | + | chr4.2:76532650-76532669 | None:intergenic | 35.0% | |
GTAATATCACAAGTAGACCT+AGG | + | chr4.2:76531715-76531734 | None:intergenic | 35.0% | |
TAAAAAGCTTCAGCAAGAAC+TGG | - | chr4.2:76533009-76533028 | MS.gene82172:intron | 35.0% | |
TACAATGCAAGCTCAAAAGA+AGG | - | chr4.2:76532451-76532470 | MS.gene82172:intron | 35.0% | |
TTATCGATGCAATGCATGTT+AGG | + | chr4.2:76532482-76532501 | None:intergenic | 35.0% | |
TTGCCAAGATTCTGGATATA+AGG | - | chr4.2:76532644-76532663 | MS.gene82172:CDS | 35.0% | |
! | GAACAACTTTTGAATGCTCA+AGG | + | chr4.2:76531939-76531958 | None:intergenic | 35.0% |
!! | ATGTAGTTTTGCCAAGATTC+TGG | - | chr4.2:76532636-76532655 | MS.gene82172:CDS | 35.0% |
!! | TATCAGACTTGTTAGACATC+TGG | + | chr4.2:76531529-76531548 | None:intergenic | 35.0% |
!! | TTGGTTTTTGGGAATTGAAG+AGG | + | chr4.2:76531366-76531385 | None:intergenic | 35.0% |
!! | TTTTGAATGCTCAAGGTATC+AGG | + | chr4.2:76531932-76531951 | None:intergenic | 35.0% |
!!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr4.2:76531986-76532005 | MS.gene82172:intron | 35.0% |
ACATTATGTGTGGAGAAGTG+TGG | - | chr4.2:76532021-76532040 | MS.gene82172:intron | 40.0% | |
GGCAACACAACTCCATTATT+AGG | + | chr4.2:76531694-76531713 | None:intergenic | 40.0% | |
GGCCTAACACAATATTTCTC+AGG | + | chr4.2:76531673-76531692 | None:intergenic | 40.0% | |
TAGAAAAGGTTGCAACTTGC+AGG | - | chr4.2:76531633-76531652 | MS.gene82172:CDS | 40.0% | |
TCAAATTCTGATGCTTGAGC+TGG | + | chr4.2:76532726-76532745 | None:intergenic | 40.0% | |
! | ATAATGGAGTTGTGTTGCCT+AGG | - | chr4.2:76531695-76531714 | MS.gene82172:CDS | 40.0% |
! | ATGGAAAGTGTAGCTCTTGA+GGG | + | chr4.2:76531334-76531353 | None:intergenic | 40.0% |
! | TACCAGCGATAATTTGTGCA+GGG | + | chr4.2:76532068-76532087 | None:intergenic | 40.0% |
TCGATGCAATGCATGTTAGG+TGG | + | chr4.2:76532479-76532498 | None:intergenic | 45.0% | |
TCGTGCTCTTGTATGCAAGA+GGG | + | chr4.2:76531766-76531785 | None:intergenic | 45.0% | |
TGTGTGTGTATCTAGCCACT+AGG | + | chr4.2:76532004-76532023 | None:intergenic | 45.0% | |
TTCGTGCTCTTGTATGCAAG+AGG | + | chr4.2:76531767-76531786 | None:intergenic | 45.0% | |
! | ACCAGCGATAATTTGTGCAG+GGG | + | chr4.2:76532067-76532086 | None:intergenic | 45.0% |
! | CATGGAAAGTGTAGCTCTTG+AGG | + | chr4.2:76531335-76531354 | None:intergenic | 45.0% |
! | CTACCAGCGATAATTTGTGC+AGG | + | chr4.2:76532069-76532088 | None:intergenic | 45.0% |
CAAAGCATAGTCGCAAAGCC+TGG | - | chr4.2:76532512-76532531 | MS.gene82172:intron | 50.0% | |
CTTGTATGCAAGAGGGAGAG+TGG | + | chr4.2:76531759-76531778 | None:intergenic | 50.0% | |
TCTGATGCTTGAGCTGGTGA+CGG | + | chr4.2:76532720-76532739 | None:intergenic | 50.0% | |
! | GATAATTTGTGCAGGGGCCA+GGG | + | chr4.2:76532061-76532080 | None:intergenic | 50.0% |
! | GCTCTTGAGGGTGTATCTGA+AGG | + | chr4.2:76531322-76531341 | None:intergenic | 50.0% |
! | GTGTGGAGAAGTGTGGAATC+CGG | - | chr4.2:76532028-76532047 | MS.gene82172:intron | 50.0% |
! | TGTGGAGAAGTGTGGAATCC+GGG | - | chr4.2:76532029-76532048 | MS.gene82172:intron | 50.0% |
!! | ATATCTTCTGGGGTTGCACC+AGG | + | chr4.2:76532533-76532552 | None:intergenic | 50.0% |
GCCCCTGCACAAATTATCGC+TGG | - | chr4.2:76532063-76532082 | MS.gene82172:intron | 55.0% | |
! | CGATAATTTGTGCAGGGGCC+AGG | + | chr4.2:76532062-76532081 | None:intergenic | 55.0% |
! | GTGGAGAAGTGTGGAATCCG+GGG | - | chr4.2:76532030-76532049 | MS.gene82172:intron | 55.0% |
!! | ATGCTTGAGCTGGTGACGGT+GGG | + | chr4.2:76532716-76532735 | None:intergenic | 55.0% |
!! | GATGCTTGAGCTGGTGACGG+TGG | + | chr4.2:76532717-76532736 | None:intergenic | 60.0% |
!! | TGAGCTGGTGACGGTGGGTT+AGG | + | chr4.2:76532711-76532730 | None:intergenic | 60.0% |
TGGAATCCGGGGTTCGACCC+TGG | - | chr4.2:76532041-76532060 | MS.gene82172:intron | 65.0% | |
!! | GCTGGTGACGGTGGGTTAGG+AGG | + | chr4.2:76532708-76532727 | None:intergenic | 65.0% |
!! | GGTGACGGTGGGTTAGGAGG+AGG | + | chr4.2:76532705-76532724 | None:intergenic | 65.0% |
CAGGGGCCAGGGTCGAACCC+CGG | + | chr4.2:76532050-76532069 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 76531266 | 76533099 | 76531266 | ID=MS.gene82172 |
chr4.2 | mRNA | 76531266 | 76533099 | 76531266 | ID=MS.gene82172.t1;Parent=MS.gene82172 |
chr4.2 | exon | 76533012 | 76533099 | 76533012 | ID=MS.gene82172.t1.exon1;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76533012 | 76533099 | 76533012 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
chr4.2 | exon | 76532800 | 76532870 | 76532800 | ID=MS.gene82172.t1.exon2;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76532800 | 76532870 | 76532800 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
chr4.2 | exon | 76532629 | 76532710 | 76532629 | ID=MS.gene82172.t1.exon3;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76532629 | 76532710 | 76532629 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
chr4.2 | exon | 76531800 | 76531915 | 76531800 | ID=MS.gene82172.t1.exon4;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76531800 | 76531915 | 76531800 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
chr4.2 | exon | 76531604 | 76531723 | 76531604 | ID=MS.gene82172.t1.exon5;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76531604 | 76531723 | 76531604 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
chr4.2 | exon | 76531335 | 76531412 | 76531335 | ID=MS.gene82172.t1.exon6;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76531335 | 76531412 | 76531335 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
chr4.2 | exon | 76531266 | 76531301 | 76531266 | ID=MS.gene82172.t1.exon7;Parent=MS.gene82172.t1 |
chr4.2 | CDS | 76531266 | 76531301 | 76531266 | ID=cds.MS.gene82172.t1;Parent=MS.gene82172.t1 |
Gene Sequence |
Protein sequence |