Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82200.t1 | XP_013455140.1 | 94.4 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 4.00E-118 | 434.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82200.t1 | B8DIJ5 | 31.6 | 133 | 84 | 3 | 68 | 196 | 4 | 133 | 7.0e-10 | 65.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82200.t1 | A0A072UJ99 | 94.4 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 2.9e-118 | 434.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054473 | MS.gene82200 | 0.808927 | 2.43E-50 | -1.69E-46 |
MS.gene055422 | MS.gene82200 | 0.806288 | 8.85E-50 | -1.69E-46 |
MS.gene055428 | MS.gene82200 | 0.816167 | 6.36E-52 | -1.69E-46 |
MS.gene057439 | MS.gene82200 | 0.801271 | 9.74E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82200.t1 | MTR_4g027430 | 94.372 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 2.83e-165 | 455 |
MS.gene82200.t1 | MTR_2g064690 | 87.597 | 129 | 14 | 1 | 105 | 231 | 1 | 129 | 5.45e-79 | 233 |
MS.gene82200.t1 | MTR_2g064670 | 96.386 | 83 | 3 | 0 | 1 | 83 | 1 | 83 | 1.04e-53 | 167 |
MS.gene82200.t1 | MTR_2g064700 | 85.870 | 92 | 5 | 1 | 1 | 92 | 1 | 84 | 9.92e-49 | 155 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82200.t1 | AT1G12244 | 67.760 | 183 | 58 | 1 | 45 | 226 | 61 | 243 | 1.20e-78 | 237 |
Find 46 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTGTAGTTCAAGATTCT+TGG | 0.213325 | 4.2:-75852709 | None:intergenic |
GAAGCTGATGAGTTTATAAT+TGG | 0.233134 | 4.2:+75850484 | MS.gene82200:CDS |
TTCTTCCTCCGAAGCGCGTT+TGG | 0.249873 | 4.2:-75847919 | None:intergenic |
TGAGAAATAATCATCATCTT+TGG | 0.274796 | 4.2:-75852751 | None:intergenic |
AGGCATCTTGTTTCTTCTGC+TGG | 0.280011 | 4.2:-75852299 | None:intergenic |
CATGTTGACCATTCGATCTA+TGG | 0.320229 | 4.2:-75851683 | None:intergenic |
GTATATCTACACGATGAATA+TGG | 0.323530 | 4.2:+75851646 | MS.gene82200:CDS |
CCTTGTAGTTCAAGATTCTT+GGG | 0.350745 | 4.2:-75852708 | None:intergenic |
GGCATCTTGTTTCTTCTGCT+GGG | 0.389860 | 4.2:-75852298 | None:intergenic |
GAGAAATAATCATCATCTTT+GGG | 0.395248 | 4.2:-75852750 | None:intergenic |
CTTCTGCGATGTTCATTATC+CGG | 0.402017 | 4.2:-75850359 | None:intergenic |
AACTTCCTCCAAACGCGCTT+CGG | 0.404160 | 4.2:+75847911 | MS.gene82200:CDS |
GAGAGATATTTCTCCACATC+AGG | 0.432417 | 4.2:+75852663 | MS.gene82200:CDS |
TGGAGAGGTGGGTTCTCTCT+TGG | 0.437334 | 4.2:+75847952 | MS.gene82200:CDS |
TTCTCTCTTGGTGTCGACTT+AGG | 0.437788 | 4.2:+75847964 | MS.gene82200:CDS |
TCCTTTCCATCACAAGACTT+TGG | 0.469405 | 4.2:-75850511 | None:intergenic |
AAGAGTTTCAAGGGTGGCAC+TGG | 0.486520 | 4.2:-75847796 | None:intergenic |
TATATCTACACGATGAATAT+GGG | 0.495994 | 4.2:+75851647 | MS.gene82200:CDS |
AAATGAGTGGAAGAGTTTCA+AGG | 0.497687 | 4.2:-75847806 | None:intergenic |
TTCCTCCGAAGCGCGTTTGG+AGG | 0.506216 | 4.2:-75847916 | None:intergenic |
AAAGATGCAGAATGGAGAGG+TGG | 0.518239 | 4.2:+75847940 | MS.gene82200:CDS |
TCCAAAGTCTTGTGATGGAA+AGG | 0.526441 | 4.2:+75850510 | MS.gene82200:CDS |
GACTTAGGAATGGCTCGCAC+TGG | 0.534511 | 4.2:+75847979 | MS.gene82200:CDS |
GGACTTCCAAAGTCTTGTGA+TGG | 0.537166 | 4.2:+75850505 | MS.gene82200:CDS |
CCCAAGAATCTTGAACTACA+AGG | 0.541911 | 4.2:+75852708 | MS.gene82200:CDS |
ACTGGCATTGCTCTCAGCAA+AGG | 0.544002 | 4.2:+75847997 | MS.gene82200:CDS |
GAGGACAGAAACTTGAGGTC+CGG | 0.550595 | 4.2:+75850340 | MS.gene82200:CDS |
TACACTTACCATGGCAGCAT+AGG | 0.559395 | 4.2:-75852319 | None:intergenic |
AATGAGTGGAAGAGTTTCAA+GGG | 0.564579 | 4.2:-75847805 | None:intergenic |
TTCCTCCAAACGCGCTTCGG+AGG | 0.565039 | 4.2:+75847914 | MS.gene82200:CDS |
TCTTGGTGTCGACTTAGGAA+TGG | 0.573218 | 4.2:+75847969 | MS.gene82200:CDS |
GGAGGAAGAAAGATGCAGAA+TGG | 0.578101 | 4.2:+75847932 | MS.gene82200:CDS |
ACAAGATGCCTATGCTGCCA+TGG | 0.581302 | 4.2:+75852311 | MS.gene82200:CDS |
AAATGCCGCCATAGATCGAA+TGG | 0.589365 | 4.2:+75851675 | MS.gene82200:CDS |
ACTCTTTCAGGGGCTTGAGT+AGG | 0.589416 | 4.2:+75852274 | MS.gene82200:intron |
AATGAACATCGCAGAAGAAG+AGG | 0.590370 | 4.2:+75850365 | MS.gene82200:CDS |
AAGAAAGATGCAGAATGGAG+AGG | 0.598221 | 4.2:+75847937 | MS.gene82200:CDS |
CTACAAGGAAAACTTAGAAG+TGG | 0.611235 | 4.2:+75852723 | MS.gene82200:CDS |
AAGATGCAGAATGGAGAGGT+GGG | 0.613873 | 4.2:+75847941 | MS.gene82200:CDS |
CAAGCCTTCCAGTAAAAGAA+CGG | 0.630801 | 4.2:-75850555 | None:intergenic |
TTGCTAATCGAGCTGCTGAG+AGG | 0.671815 | 4.2:+75850575 | MS.gene82200:CDS |
AAATAATCATCATCTTTGGG+AGG | 0.679374 | 4.2:-75852747 | None:intergenic |
GAGTGGAAGAGTTTCAAGGG+TGG | 0.680073 | 4.2:-75847802 | None:intergenic |
GATTTGAAGGTTGAAATGAG+TGG | 0.689513 | 4.2:-75847819 | None:intergenic |
GTTGACCATTCGATCTATGG+CGG | 0.691744 | 4.2:-75851680 | None:intergenic |
ACTGCGAGGACAGAAACTTG+AGG | 0.702953 | 4.2:+75850335 | MS.gene82200:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAAAAAAAAGAATGTTTT+TGG | + | chr4.2:75852540-75852559 | MS.gene82200:intron | 10.0% |
!!! | TTAAAAAAAAGAATGTTTTT+GGG | + | chr4.2:75852541-75852560 | MS.gene82200:intron | 10.0% |
!!! | TTTTTACAAATTGATAATAA+AGG | - | chr4.2:75849929-75849948 | None:intergenic | 10.0% |
!! | AAAGTAAATACACAATTATA+AGG | - | chr4.2:75850305-75850324 | None:intergenic | 15.0% |
!! | AATAAGAAAATGAATAGAAA+AGG | + | chr4.2:75850659-75850678 | MS.gene82200:intron | 15.0% |
!! | ATAAGAAAATGAATAGAAAA+GGG | + | chr4.2:75850660-75850679 | MS.gene82200:intron | 15.0% |
!! | CATTATTCTTAATTCTTATA+AGG | + | chr4.2:75851080-75851099 | MS.gene82200:intron | 15.0% |
!! | TATAATTGTGTATTTACTTT+AGG | + | chr4.2:75850305-75850324 | MS.gene82200:intron | 15.0% |
!!! | AAACAATTTTATATCCAAAA+TGG | - | chr4.2:75852043-75852062 | None:intergenic | 15.0% |
!!! | AAATTGATAATAAAGGTAAT+CGG | - | chr4.2:75849922-75849941 | None:intergenic | 15.0% |
!!! | TATATAGTTTAAAACCATTT+TGG | + | chr4.2:75852026-75852045 | MS.gene82200:intron | 15.0% |
!!! | TATCAATAGATCATTATTTT+AGG | - | chr4.2:75851322-75851341 | None:intergenic | 15.0% |
!!! | TGAATAATCAATGATTATTT+TGG | + | chr4.2:75848319-75848338 | MS.gene82200:intron | 15.0% |
!!! | TTCTATTCATTTTCTTATTT+TGG | - | chr4.2:75850658-75850677 | None:intergenic | 15.0% |
!! | AAACTAAAACAACAAAACAA+GGG | - | chr4.2:75848412-75848431 | None:intergenic | 20.0% |
!! | AAATATTGTTACAGAGTAAA+CGG | - | chr4.2:75849101-75849120 | None:intergenic | 20.0% |
!! | AAGAATTAAGAATAATGACT+TGG | - | chr4.2:75851077-75851096 | None:intergenic | 20.0% |
!! | ACGAACAAAAGATAAAATAA+AGG | + | chr4.2:75850908-75850927 | MS.gene82200:intron | 20.0% |
!! | TATGACAGTAAGTATATTAA+TGG | - | chr4.2:75848222-75848241 | None:intergenic | 20.0% |
!! | TCATTATAGATATTGAAGAA+TGG | - | chr4.2:75851139-75851158 | None:intergenic | 20.0% |
!! | TTCTTCATAAGCAATTATTA+TGG | - | chr4.2:75851929-75851948 | None:intergenic | 20.0% |
!!! | AAAACTGGTTCTTATTTATA+AGG | + | chr4.2:75851418-75851437 | MS.gene82200:intron | 20.0% |
!!! | ACAAAAACTCTTTTCTTATA+AGG | - | chr4.2:75848250-75848269 | None:intergenic | 20.0% |
!!! | CTCTTTGTTTTGTTTTAAAA+AGG | + | chr4.2:75849371-75849390 | MS.gene82200:intron | 20.0% |
!!! | CTTTTTAAAACAAAACAAAG+AGG | - | chr4.2:75849373-75849392 | None:intergenic | 20.0% |
!!! | TACATTCAATTTTTTCAAAG+AGG | + | chr4.2:75848591-75848610 | MS.gene82200:intron | 20.0% |
!!! | TTTTTATGTTTGCGAATTAT+TGG | - | chr4.2:75850816-75850835 | None:intergenic | 20.0% |
! | AAAAACAAACACCAATCAAA+AGG | + | chr4.2:75849647-75849666 | MS.gene82200:intron | 25.0% |
! | AACTAAAACAACAAAACAAG+GGG | - | chr4.2:75848411-75848430 | None:intergenic | 25.0% |
! | AAGTACTAAAGTAAATGAGT+AGG | + | chr4.2:75851881-75851900 | MS.gene82200:intron | 25.0% |
! | AATATTGTTACAGAGTAAAC+GGG | - | chr4.2:75849100-75849119 | None:intergenic | 25.0% |
! | AATCCAATTTACTTCAGATT+TGG | + | chr4.2:75849965-75849984 | MS.gene82200:intron | 25.0% |
! | ACCATATGTCTAAATATGAT+TGG | + | chr4.2:75849344-75849363 | MS.gene82200:intron | 25.0% |
! | AGCATTTCACTTTATCAAAT+TGG | + | chr4.2:75848770-75848789 | MS.gene82200:intron | 25.0% |
! | AGTACTAAAGTAAATGAGTA+GGG | + | chr4.2:75851882-75851901 | MS.gene82200:intron | 25.0% |
! | ATCAAATTGTAACAGATTTC+TGG | - | chr4.2:75849705-75849724 | None:intergenic | 25.0% |
! | ATGAAAAGAGAAGACAATTA+TGG | + | chr4.2:75852601-75852620 | MS.gene82200:intron | 25.0% |
! | ATTTCAATTGCATAACATCA+TGG | + | chr4.2:75848844-75848863 | MS.gene82200:intron | 25.0% |
! | CAATCGTTCAGTATTTATAA+AGG | - | chr4.2:75849516-75849535 | None:intergenic | 25.0% |
! | CCATATGTCTAAATATGATT+GGG | + | chr4.2:75849345-75849364 | MS.gene82200:intron | 25.0% |
! | GAAACTAAAACAACAAAACA+AGG | - | chr4.2:75848413-75848432 | None:intergenic | 25.0% |
! | GAATATATTCCTGAAAATAC+TGG | - | chr4.2:75849251-75849270 | None:intergenic | 25.0% |
! | GAGAAATAATCATCATCTTT+GGG | - | chr4.2:75852753-75852772 | None:intergenic | 25.0% |
! | GCAAAACAAACATAATAACA+TGG | - | chr4.2:75848076-75848095 | None:intergenic | 25.0% |
! | GTAAAAAATCTTTACACTAC+AGG | + | chr4.2:75849550-75849569 | MS.gene82200:intron | 25.0% |
! | GTATAAGATAACATTAGTGA+AGG | - | chr4.2:75849314-75849333 | None:intergenic | 25.0% |
! | TACACAATTATAAGGATCAA+TGG | - | chr4.2:75850297-75850316 | None:intergenic | 25.0% |
! | TATATCTACACGATGAATAT+GGG | + | chr4.2:75851647-75851666 | MS.gene82200:CDS | 25.0% |
! | TCTAAAAACAGCATTAACTT+TGG | + | chr4.2:75847885-75847904 | MS.gene82200:CDS | 25.0% |
! | TCTGATGCTTATTTAGTATT+TGG | + | chr4.2:75851505-75851524 | MS.gene82200:intron | 25.0% |
! | TGAGAAATAATCATCATCTT+TGG | - | chr4.2:75852754-75852773 | None:intergenic | 25.0% |
! | TGGAATTTATTACTTTACTG+TGG | + | chr4.2:75852235-75852254 | MS.gene82200:intron | 25.0% |
! | TTATTGGGTAAAATCTATGT+AGG | - | chr4.2:75848725-75848744 | None:intergenic | 25.0% |
! | TTCAGTTGAAAATTTGAATG+AGG | + | chr4.2:75848430-75848449 | MS.gene82200:intron | 25.0% |
! | TTGACAAAAATAATGACGAA+GGG | + | chr4.2:75852377-75852396 | MS.gene82200:intron | 25.0% |
! | TTGGATACCAATAATTATTG+TGG | - | chr4.2:75848137-75848156 | None:intergenic | 25.0% |
! | TTGTCAACATTACATTACAA+TGG | - | chr4.2:75850605-75850624 | None:intergenic | 25.0% |
! | TTTGACAAAAATAATGACGA+AGG | + | chr4.2:75852376-75852395 | MS.gene82200:intron | 25.0% |
!! | AATGTTTTTCCAGTATTTTC+AGG | + | chr4.2:75849239-75849258 | MS.gene82200:intron | 25.0% |
!! | ACAAACTTGATTTTTCCTTT+CGG | - | chr4.2:75851483-75851502 | None:intergenic | 25.0% |
!! | ACACACAGATTTTATACAAT+AGG | - | chr4.2:75848663-75848682 | None:intergenic | 25.0% |
!! | AGTCCTTTAAGAATTCAAAA+TGG | + | chr4.2:75851276-75851295 | MS.gene82200:intron | 25.0% |
!! | ATTTCAAGCAACATTTTGTA+TGG | + | chr4.2:75852215-75852234 | MS.gene82200:intron | 25.0% |
!! | CACAAATGATAGTTTTTGAT+TGG | - | chr4.2:75849461-75849480 | None:intergenic | 25.0% |
!! | CGAAGATGATTTTGAATTAT+AGG | + | chr4.2:75850462-75850481 | MS.gene82200:intron | 25.0% |
!! | GAACCATTTTGAATTCTTAA+AGG | - | chr4.2:75851282-75851301 | None:intergenic | 25.0% |
!! | TAATTGTCTTCTCTTTTCAT+TGG | - | chr4.2:75852601-75852620 | None:intergenic | 25.0% |
!! | TACTGGAAAAACATTGTTTT+CGG | - | chr4.2:75849234-75849253 | None:intergenic | 25.0% |
!! | TCACTCTTTAATCATTTTAG+AGG | - | chr4.2:75849993-75850012 | None:intergenic | 25.0% |
!! | TCTAAAATGATTAAAGAGTG+AGG | + | chr4.2:75849992-75850011 | MS.gene82200:intron | 25.0% |
!! | TGAATTTTTGCATGATTTGA+AGG | - | chr4.2:75847835-75847854 | None:intergenic | 25.0% |
!! | TGCAATTTTATCCTTTTGAT+TGG | - | chr4.2:75849661-75849680 | None:intergenic | 25.0% |
!! | TGTTAATGACCATTTTACAA+TGG | + | chr4.2:75852424-75852443 | MS.gene82200:intron | 25.0% |
!! | TTTCAAATTTTACGTGTAGA+TGG | + | chr4.2:75849119-75849138 | MS.gene82200:intron | 25.0% |
!!! | AAAAAAGCGTTACTGTTAAA+GGG | - | chr4.2:75848035-75848054 | None:intergenic | 25.0% |
!!! | CATTTTGGTTGTAAAATGTT+GGG | + | chr4.2:75848492-75848511 | MS.gene82200:intron | 25.0% |
!!! | GAAGGATTATTTTAACGATA+GGG | + | chr4.2:75848277-75848296 | MS.gene82200:intron | 25.0% |
!!! | TAAAAAAGCGTTACTGTTAA+AGG | - | chr4.2:75848036-75848055 | None:intergenic | 25.0% |
!!! | TAATGCTGTTTTTAGATTGT+GGG | - | chr4.2:75847881-75847900 | None:intergenic | 25.0% |
!!! | TAGATCATTATTTTAGGATG+TGG | - | chr4.2:75851316-75851335 | None:intergenic | 25.0% |
!!! | TGAAGGATTATTTTAACGAT+AGG | + | chr4.2:75848276-75848295 | MS.gene82200:intron | 25.0% |
!!! | TGTGATTTGGTACTATATTT+TGG | + | chr4.2:75848459-75848478 | MS.gene82200:intron | 25.0% |
!!! | TTAATGCTGTTTTTAGATTG+TGG | - | chr4.2:75847882-75847901 | None:intergenic | 25.0% |
!!! | TTGGAATTTTGATACATTCA+AGG | + | chr4.2:75848338-75848357 | MS.gene82200:intron | 25.0% |
AAAGATCAAAAAGAGGACTA+TGG | - | chr4.2:75849848-75849867 | None:intergenic | 30.0% | |
AAATAATCATCATCTTTGGG+AGG | - | chr4.2:75852750-75852769 | None:intergenic | 30.0% | |
AATCATCTTCGTTATCTCTA+AGG | - | chr4.2:75850453-75850472 | None:intergenic | 30.0% | |
ACTAAACATGCTGAAACTTT+AGG | + | chr4.2:75849801-75849820 | MS.gene82200:intron | 30.0% | |
AGAAGATTGAAGCTTATTAG+AGG | + | chr4.2:75849188-75849207 | MS.gene82200:intron | 30.0% | |
AGCATGTTCACTAGTTAAAA+TGG | - | chr4.2:75848902-75848921 | None:intergenic | 30.0% | |
AGTTATAAAACGACACTTTC+AGG | - | chr4.2:75851805-75851824 | None:intergenic | 30.0% | |
ATAGATATTGAAGAATGGCA+AGG | - | chr4.2:75851134-75851153 | None:intergenic | 30.0% | |
ATGAATAGAAAAGGGATGAA+TGG | + | chr4.2:75850668-75850687 | MS.gene82200:intron | 30.0% | |
ATTAGCAAAGACACTTCATA+TGG | + | chr4.2:75848515-75848534 | MS.gene82200:intron | 30.0% | |
ATTGGGTAAAGATCAAAAAG+AGG | - | chr4.2:75849855-75849874 | None:intergenic | 30.0% | |
ATTGTATCAATTCCTAACAC+AGG | + | chr4.2:75850043-75850062 | MS.gene82200:intron | 30.0% | |
CAATTGAAATACACATATCG+TGG | - | chr4.2:75848834-75848853 | None:intergenic | 30.0% | |
CATACTAAACAACAAAGACA+CGG | - | chr4.2:75850230-75850249 | None:intergenic | 30.0% | |
CCCAATCATATTTAGACATA+TGG | - | chr4.2:75849348-75849367 | None:intergenic | 30.0% | |
CCTTAGAAACCATTGTAAAA+TGG | - | chr4.2:75852436-75852455 | None:intergenic | 30.0% | |
GAAGCTGATGAGTTTATAAT+TGG | + | chr4.2:75850484-75850503 | MS.gene82200:CDS | 30.0% | |
GACAAAGAATCTAATATGCA+AGG | - | chr4.2:75850096-75850115 | None:intergenic | 30.0% | |
GATACATTCAAGGTCTATTA+TGG | + | chr4.2:75848348-75848367 | MS.gene82200:intron | 30.0% | |
GTACTAAAGTAAATGAGTAG+GGG | + | chr4.2:75851883-75851902 | MS.gene82200:intron | 30.0% | |
GTATATCTACACGATGAATA+TGG | + | chr4.2:75851646-75851665 | MS.gene82200:CDS | 30.0% | |
GTTGAAAATTTGAATGAGGT+AGG | + | chr4.2:75848434-75848453 | MS.gene82200:intron | 30.0% | |
GTTGCTTGAAATCTTTCAAA+AGG | - | chr4.2:75852207-75852226 | None:intergenic | 30.0% | |
TAAAGTTTCAGCATGTTTAG+TGG | - | chr4.2:75849802-75849821 | None:intergenic | 30.0% | |
TACTAAAGTAAATGAGTAGG+GGG | + | chr4.2:75851884-75851903 | MS.gene82200:intron | 30.0% | |
TAGAGTTCTTAAAGCAAATG+CGG | - | chr4.2:75851233-75851252 | None:intergenic | 30.0% | |
TAGATGGTTGGAATTACAAT+TGG | + | chr4.2:75849135-75849154 | MS.gene82200:intron | 30.0% | |
TAGTGGCTGATGAAATAATT+CGG | - | chr4.2:75849785-75849804 | None:intergenic | 30.0% | |
TATCTCAAATACACTTACCA+TGG | - | chr4.2:75852331-75852350 | None:intergenic | 30.0% | |
TCTAATTCCACTCTCTTATT+GGG | - | chr4.2:75848740-75848759 | None:intergenic | 30.0% | |
TGGTATGTAAGTTTAGTCAA+TGG | + | chr4.2:75850194-75850213 | MS.gene82200:intron | 30.0% | |
TGGTTATTCTTTACACATTC+AGG | + | chr4.2:75848368-75848387 | MS.gene82200:intron | 30.0% | |
TTATGTTTGCGAATTATTGG+AGG | - | chr4.2:75850813-75850832 | None:intergenic | 30.0% | |
! | AAATTTTACGTGTAGATGGT+TGG | + | chr4.2:75849123-75849142 | MS.gene82200:intron | 30.0% |
! | AGAGTTTTTGTCAACATTGA+AGG | + | chr4.2:75848259-75848278 | MS.gene82200:intron | 30.0% |
! | CCAACATTTTACAACCAAAA+TGG | - | chr4.2:75848494-75848513 | None:intergenic | 30.0% |
! | CCATTTTACAATGGTTTCTA+AGG | + | chr4.2:75852433-75852452 | MS.gene82200:intron | 30.0% |
! | GAATTATTGGAGGTATATCT+CGG | - | chr4.2:75850803-75850822 | None:intergenic | 30.0% |
! | GATTTGAATTTTGTTCCTTG+AGG | + | chr4.2:75852457-75852476 | MS.gene82200:intron | 30.0% |
! | GTAAGTTTAGTCAATGGATT+TGG | + | chr4.2:75850200-75850219 | MS.gene82200:intron | 30.0% |
! | TAACATTAGTGAAGGCATAA+TGG | - | chr4.2:75849306-75849325 | None:intergenic | 30.0% |
! | TGGTAAAACACTTTTCTTCT+AGG | - | chr4.2:75852067-75852086 | None:intergenic | 30.0% |
! | TTATTTCTCGCACTTAATAG+AGG | + | chr4.2:75851543-75851562 | MS.gene82200:intron | 30.0% |
! | TTCTTCAATACTGTCTGTTT+TGG | + | chr4.2:75851742-75851761 | MS.gene82200:intron | 30.0% |
!! | GAAGAAGTATGCATGTTTTT+GGG | + | chr4.2:75851943-75851962 | MS.gene82200:intron | 30.0% |
!! | TATGTTTGGATTGGTAGTAT+AGG | + | chr4.2:75849035-75849054 | MS.gene82200:intron | 30.0% |
!! | TGAAGAAGTATGCATGTTTT+TGG | + | chr4.2:75851942-75851961 | MS.gene82200:intron | 30.0% |
!!! | AACCAGTTGTGTTTTTAAGT+CGG | - | chr4.2:75851445-75851464 | None:intergenic | 30.0% |
!!! | ATAGGGACTATTTTGACTAA+CGG | + | chr4.2:75848294-75848313 | MS.gene82200:intron | 30.0% |
!!! | CCATTTTGGTTGTAAAATGT+TGG | + | chr4.2:75848491-75848510 | MS.gene82200:intron | 30.0% |
!!! | CGATAGACTATTTTGATCAA+CGG | - | chr4.2:75848188-75848207 | None:intergenic | 30.0% |
!!! | TCAAGGACTATTTTGGAATT+TGG | - | chr4.2:75848156-75848175 | None:intergenic | 30.0% |
!!! | TGTTTGTTTTTGCTTCTCTT+TGG | - | chr4.2:75849638-75849657 | None:intergenic | 30.0% |
!!! | TTTGGTTTGTTTGTCCATTT+TGG | + | chr4.2:75848477-75848496 | MS.gene82200:intron | 30.0% |
!!! | TTTTTTCAAAGAGGAGTGTT+AGG | + | chr4.2:75848600-75848619 | MS.gene82200:intron | 30.0% |
AAATGAGTGGAAGAGTTTCA+AGG | - | chr4.2:75847809-75847828 | None:intergenic | 35.0% | |
AATGAGGTAGGAATGTGATT+TGG | + | chr4.2:75848446-75848465 | MS.gene82200:intron | 35.0% | |
AATGAGTGGAAGAGTTTCAA+GGG | - | chr4.2:75847808-75847827 | None:intergenic | 35.0% | |
ACATACTACACAACAACACA+TGG | - | chr4.2:75850132-75850151 | None:intergenic | 35.0% | |
ACGCACTTAAAACTCTTTCA+GGG | + | chr4.2:75852263-75852282 | MS.gene82200:intron | 35.0% | |
AGAGCAGAATGGAATAGAAT+CGG | + | chr4.2:75849064-75849083 | MS.gene82200:intron | 35.0% | |
AGATGAGATAAGAACCTCTA+TGG | - | chr4.2:75851192-75851211 | None:intergenic | 35.0% | |
AGCCTGTATCAGATTATTAC+TGG | + | chr4.2:75848959-75848978 | MS.gene82200:intron | 35.0% | |
ATAGGATGAATAGAGCAGAA+TGG | + | chr4.2:75849053-75849072 | MS.gene82200:intron | 35.0% | |
ATCTGATACAGGCTATTCAT+CGG | - | chr4.2:75848953-75848972 | None:intergenic | 35.0% | |
CACCAGTAATAATCTGATAC+AGG | - | chr4.2:75848964-75848983 | None:intergenic | 35.0% | |
CAGCAAAAATCCAGATTTAG+CGG | - | chr4.2:75848874-75848893 | None:intergenic | 35.0% | |
CCTTGTAGTTCAAGATTCTT+GGG | - | chr4.2:75852711-75852730 | None:intergenic | 35.0% | |
CGAGTAGCCACAATAATTAT+TGG | + | chr4.2:75848127-75848146 | MS.gene82200:intron | 35.0% | |
CTACAAGGAAAACTTAGAAG+TGG | + | chr4.2:75852723-75852742 | MS.gene82200:CDS | 35.0% | |
CTCTAATTCCACTCTCTTAT+TGG | - | chr4.2:75848741-75848760 | None:intergenic | 35.0% | |
CTTATTTCCATAAGCATTCC+AGG | - | chr4.2:75850970-75850989 | None:intergenic | 35.0% | |
CTTGTGCGATGCTTAAAATT+CGG | + | chr4.2:75850405-75850424 | MS.gene82200:intron | 35.0% | |
GATTTGAAGGTTGAAATGAG+TGG | - | chr4.2:75847822-75847841 | None:intergenic | 35.0% | |
GGCACAGTTCATATACTAAT+TGG | + | chr4.2:75851772-75851791 | MS.gene82200:intron | 35.0% | |
GGTTGGAATTACAATTGGTT+AGG | + | chr4.2:75849140-75849159 | MS.gene82200:intron | 35.0% | |
GTGTGCTTATTAGTGATGTT+AGG | + | chr4.2:75850171-75850190 | MS.gene82200:intron | 35.0% | |
TATCTCAACTCTAACTTCAG+AGG | + | chr4.2:75851616-75851635 | MS.gene82200:intron | 35.0% | |
TCATATGGAAAAGACGTGTT+AGG | + | chr4.2:75848530-75848549 | MS.gene82200:intron | 35.0% | |
TCCTTGTAGTTCAAGATTCT+TGG | - | chr4.2:75852712-75852731 | None:intergenic | 35.0% | |
TGCTTATTAGTGATGTTAGG+TGG | + | chr4.2:75850174-75850193 | MS.gene82200:intron | 35.0% | |
TTATGTTTGTGCTTCATAGC+TGG | + | chr4.2:75849008-75849027 | MS.gene82200:intron | 35.0% | |
TTTCATTGGCACTTCAAAAC+AGG | - | chr4.2:75852587-75852606 | None:intergenic | 35.0% | |
! | AACATAGTCCGTTCTTTTAC+TGG | + | chr4.2:75850547-75850566 | MS.gene82200:CDS | 35.0% |
! | ACAAGGGGTAATAGTCATTT+TGG | - | chr4.2:75848396-75848415 | None:intergenic | 35.0% |
! | GAATAGGAATTCGGTGAATT+GGG | - | chr4.2:75849872-75849891 | None:intergenic | 35.0% |
! | GATTTTACCCAATAAGAGAG+TGG | + | chr4.2:75848730-75848749 | MS.gene82200:intron | 35.0% |
! | GGTTCTTATCTCATCTTTTG+TGG | + | chr4.2:75851196-75851215 | MS.gene82200:intron | 35.0% |
! | TACTCCTATGATGGAACTTA+GGG | + | chr4.2:75851395-75851414 | MS.gene82200:intron | 35.0% |
! | TGAATAGGAATTCGGTGAAT+TGG | - | chr4.2:75849873-75849892 | None:intergenic | 35.0% |
! | TGTACGATCAAGGACTATTT+TGG | - | chr4.2:75848163-75848182 | None:intergenic | 35.0% |
! | TTACTCCTATGATGGAACTT+AGG | + | chr4.2:75851394-75851413 | MS.gene82200:intron | 35.0% |
! | TTTTCCCTAAGTTCCATCAT+AGG | - | chr4.2:75851402-75851421 | None:intergenic | 35.0% |
!! | AAGTACTTTGAGACTGTTTG+AGG | - | chr4.2:75851026-75851045 | None:intergenic | 35.0% |
!! | AATGTGTTCGAGCTTTGAAT+AGG | - | chr4.2:75849888-75849907 | None:intergenic | 35.0% |
!! | GCAAACATAAAAAGTGCTCT+GGG | + | chr4.2:75850823-75850842 | MS.gene82200:intron | 35.0% |
!! | TCGAGCTTTGAATAGGAATT+CGG | - | chr4.2:75849881-75849900 | None:intergenic | 35.0% |
AAGAAAGATGCAGAATGGAG+AGG | + | chr4.2:75847937-75847956 | MS.gene82200:CDS | 40.0% | |
AATGAACATCGCAGAAGAAG+AGG | + | chr4.2:75850365-75850384 | MS.gene82200:CDS | 40.0% | |
ACAAGTGCTAGAGATAGTGT+TGG | - | chr4.2:75848637-75848656 | None:intergenic | 40.0% | |
ACTAGTGATCACTGATGAGA+GGG | - | chr4.2:75852091-75852110 | None:intergenic | 40.0% | |
AGTTTGATCTCGTAACCTCA+AGG | - | chr4.2:75852475-75852494 | None:intergenic | 40.0% | |
CAAGCCTTCCAGTAAAAGAA+CGG | - | chr4.2:75850558-75850577 | None:intergenic | 40.0% | |
CATGTTGACCATTCGATCTA+TGG | - | chr4.2:75851686-75851705 | None:intergenic | 40.0% | |
CCCAAGAATCTTGAACTACA+AGG | + | chr4.2:75852708-75852727 | MS.gene82200:CDS | 40.0% | |
CGCACTTAAAACTCTTTCAG+GGG | + | chr4.2:75852264-75852283 | MS.gene82200:intron | 40.0% | |
CTTCTGCGATGTTCATTATC+CGG | - | chr4.2:75850362-75850381 | None:intergenic | 40.0% | |
GAAATGGCTCCCACATAAAA+TGG | - | chr4.2:75848690-75848709 | None:intergenic | 40.0% | |
GACGCACTTAAAACTCTTTC+AGG | + | chr4.2:75852262-75852281 | MS.gene82200:intron | 40.0% | |
GAGAGATATTTCTCCACATC+AGG | + | chr4.2:75852663-75852682 | MS.gene82200:CDS | 40.0% | |
GCAATTATTATGGACCATGC+AGG | - | chr4.2:75851919-75851938 | None:intergenic | 40.0% | |
GGATATGCAGTCATGTTTAG+TGG | - | chr4.2:75849764-75849783 | None:intergenic | 40.0% | |
TCAACTCTAACTTCAGAGGT+TGG | + | chr4.2:75851620-75851639 | MS.gene82200:intron | 40.0% | |
TCATAGCTGGCTGATATGTT+TGG | + | chr4.2:75849021-75849040 | MS.gene82200:intron | 40.0% | |
TCATCCATGAGATGTCAACA+CGG | - | chr4.2:75852505-75852524 | None:intergenic | 40.0% | |
TCCTTTCCATCACAAGACTT+TGG | - | chr4.2:75850514-75850533 | None:intergenic | 40.0% | |
TCTGATACAGGCTATTCATC+GGG | - | chr4.2:75848952-75848971 | None:intergenic | 40.0% | |
TGATGGAACTTAGGGAAAAC+TGG | + | chr4.2:75851403-75851422 | MS.gene82200:intron | 40.0% | |
TTCTCGCACTTAATAGAGGT+TGG | + | chr4.2:75851547-75851566 | MS.gene82200:intron | 40.0% | |
! | GACCGACTTAAAAACACAAC+TGG | + | chr4.2:75851440-75851459 | MS.gene82200:intron | 40.0% |
! | GCGCCAAATCTGAAGTAAAT+TGG | - | chr4.2:75849971-75849990 | None:intergenic | 40.0% |
! | GGAATAGAATCGGCTAGTTA+GGG | + | chr4.2:75849074-75849093 | MS.gene82200:intron | 40.0% |
! | TAGTCCGTTCTTTTACTGGA+AGG | + | chr4.2:75850551-75850570 | MS.gene82200:CDS | 40.0% |
! | TCCAAAGTCTTGTGATGGAA+AGG | + | chr4.2:75850510-75850529 | MS.gene82200:CDS | 40.0% |
! | TGGAATAGAATCGGCTAGTT+AGG | + | chr4.2:75849073-75849092 | MS.gene82200:intron | 40.0% |
! | TGTGTCCCACCATTTTATGT+GGG | + | chr4.2:75848678-75848697 | MS.gene82200:intron | 40.0% |
! | TTCAGTTTTCTGACCTGATG+TGG | - | chr4.2:75852679-75852698 | None:intergenic | 40.0% |
! | TTTTGCGAGCTCAGTCATTT+TGG | + | chr4.2:75848090-75848109 | MS.gene82200:intron | 40.0% |
!! | ACTCGATAGTGTCGATAGAA+TGG | - | chr4.2:75852137-75852156 | None:intergenic | 40.0% |
!! | CGCAAACATAAAAAGTGCTC+TGG | + | chr4.2:75850822-75850841 | MS.gene82200:intron | 40.0% |
!! | GTTGTTTTCATGAGCTATCC+TGG | + | chr4.2:75850949-75850968 | MS.gene82200:intron | 40.0% |
!!! | CTTTAGGTTTTGAAACTGCG+AGG | + | chr4.2:75850321-75850340 | MS.gene82200:intron | 40.0% |
AAAGATGCAGAATGGAGAGG+TGG | + | chr4.2:75847940-75847959 | MS.gene82200:CDS | 45.0% | |
AAATGCCGCCATAGATCGAA+TGG | + | chr4.2:75851675-75851694 | MS.gene82200:CDS | 45.0% | |
AAGATGCAGAATGGAGAGGT+GGG | + | chr4.2:75847941-75847960 | MS.gene82200:CDS | 45.0% | |
ACAAGAACCATCCTTACACC+TGG | + | chr4.2:75851358-75851377 | MS.gene82200:intron | 45.0% | |
ATACAGGCTATTCATCGGGA+AGG | - | chr4.2:75848948-75848967 | None:intergenic | 45.0% | |
ATCAACGGAGTGTACGATCA+AGG | - | chr4.2:75848173-75848192 | None:intergenic | 45.0% | |
ATGGCTCCCACATAAAATGG+TGG | - | chr4.2:75848687-75848706 | None:intergenic | 45.0% | |
CTAGTGAACATGCTTCGTGA+TGG | + | chr4.2:75848908-75848927 | MS.gene82200:intron | 45.0% | |
GACTAGTGATCACTGATGAG+AGG | - | chr4.2:75852092-75852111 | None:intergenic | 45.0% | |
GAGCTATCCTGGAATGCTTA+TGG | + | chr4.2:75850960-75850979 | MS.gene82200:intron | 45.0% | |
GATGCTCTTTCGTTACCGAA+AGG | + | chr4.2:75851465-75851484 | MS.gene82200:intron | 45.0% | |
GCTGGCTGATATGTTTGGAT+TGG | + | chr4.2:75849026-75849045 | MS.gene82200:intron | 45.0% | |
GGAGGAAGAAAGATGCAGAA+TGG | + | chr4.2:75847932-75847951 | MS.gene82200:CDS | 45.0% | |
GTTGACCATTCGATCTATGG+CGG | - | chr4.2:75851683-75851702 | None:intergenic | 45.0% | |
TAACGACTCTGACCTGTGTT+AGG | - | chr4.2:75850058-75850077 | None:intergenic | 45.0% | |
TACACTTACCATGGCAGCAT+AGG | - | chr4.2:75852322-75852341 | None:intergenic | 45.0% | |
TCATGGTGTTCCGCTAAATC+TGG | + | chr4.2:75848861-75848880 | MS.gene82200:intron | 45.0% | |
TGGCTACTCGTTACACGTTA+AGG | - | chr4.2:75848117-75848136 | None:intergenic | 45.0% | |
TGGCTCCCACATAAAATGGT+GGG | - | chr4.2:75848686-75848705 | None:intergenic | 45.0% | |
TGGGAGCCATTTCAAAAGTG+CGG | + | chr4.2:75848697-75848716 | MS.gene82200:intron | 45.0% | |
! | AGGCATCTTGTTTCTTCTGC+TGG | - | chr4.2:75852302-75852321 | None:intergenic | 45.0% |
! | GACATAGAGCATCTCCATAG+AGG | + | chr4.2:75851175-75851194 | MS.gene82200:intron | 45.0% |
! | GGACTTCCAAAGTCTTGTGA+TGG | + | chr4.2:75850505-75850524 | MS.gene82200:CDS | 45.0% |
! | GGCATCTTGTTTCTTCTGCT+GGG | - | chr4.2:75852301-75852320 | None:intergenic | 45.0% |
! | GTGTGTCCCACCATTTTATG+TGG | + | chr4.2:75848677-75848696 | MS.gene82200:intron | 45.0% |
!! | TAGGTCCCGCACTTTTGAAA+TGG | - | chr4.2:75848706-75848725 | None:intergenic | 45.0% |
!! | TCTTGGTGTCGACTTAGGAA+TGG | + | chr4.2:75847969-75847988 | MS.gene82200:CDS | 45.0% |
!! | TTCTCTCTTGGTGTCGACTT+AGG | + | chr4.2:75847964-75847983 | MS.gene82200:CDS | 45.0% |
AACTTCCTCCAAACGCGCTT+CGG | + | chr4.2:75847911-75847930 | MS.gene82200:CDS | 50.0% | |
AAGAGTTTCAAGGGTGGCAC+TGG | - | chr4.2:75847799-75847818 | None:intergenic | 50.0% | |
ACAAGATGCCTATGCTGCCA+TGG | + | chr4.2:75852311-75852330 | MS.gene82200:CDS | 50.0% | |
ACATCGCAGAAGAAGAGGTC+TGG | + | chr4.2:75850370-75850389 | MS.gene82200:intron | 50.0% | |
ACTCTTTCAGGGGCTTGAGT+AGG | + | chr4.2:75852274-75852293 | MS.gene82200:intron | 50.0% | |
ACTGCGAGGACAGAAACTTG+AGG | + | chr4.2:75850335-75850354 | MS.gene82200:CDS | 50.0% | |
ACTGGCATTGCTCTCAGCAA+AGG | + | chr4.2:75847997-75848016 | MS.gene82200:CDS | 50.0% | |
GAGGACAGAAACTTGAGGTC+CGG | + | chr4.2:75850340-75850359 | MS.gene82200:CDS | 50.0% | |
GAGTGGAAGAGTTTCAAGGG+TGG | - | chr4.2:75847805-75847824 | None:intergenic | 50.0% | |
GCGCAAGCTTACTCCTATGA+TGG | + | chr4.2:75851386-75851405 | MS.gene82200:intron | 50.0% | |
GGGGGAAATTGAAACCTGCA+TGG | + | chr4.2:75851902-75851921 | MS.gene82200:intron | 50.0% | |
GTGATCACTGATGAGAGGGT+TGG | - | chr4.2:75852087-75852106 | None:intergenic | 50.0% | |
TTGCTAATCGAGCTGCTGAG+AGG | + | chr4.2:75850575-75850594 | MS.gene82200:CDS | 50.0% | |
! | AGCACCGTGTTGACATCTCA+TGG | + | chr4.2:75852498-75852517 | MS.gene82200:intron | 50.0% |
! | GGGAGCCATTTCAAAAGTGC+GGG | + | chr4.2:75848698-75848717 | MS.gene82200:intron | 50.0% |
AGTAAGCTTGCGCAGATGCC+AGG | - | chr4.2:75851379-75851398 | None:intergenic | 55.0% | |
GACTTAGGAATGGCTCGCAC+TGG | + | chr4.2:75847979-75847998 | MS.gene82200:CDS | 55.0% | |
GCAGATGCCAGGTGTAAGGA+TGG | - | chr4.2:75851368-75851387 | None:intergenic | 55.0% | |
TTCTTCCTCCGAAGCGCGTT+TGG | - | chr4.2:75847922-75847941 | None:intergenic | 55.0% | |
TTGCGCAGATGCCAGGTGTA+AGG | - | chr4.2:75851372-75851391 | None:intergenic | 55.0% | |
! | AAAGTGCTCTGGGCTCTGTC+TGG | + | chr4.2:75850833-75850852 | MS.gene82200:intron | 55.0% |
! | TGGAGAGGTGGGTTCTCTCT+TGG | + | chr4.2:75847952-75847971 | MS.gene82200:CDS | 55.0% |
TTCCTCCAAACGCGCTTCGG+AGG | + | chr4.2:75847914-75847933 | MS.gene82200:CDS | 60.0% | |
TTCCTCCGAAGCGCGTTTGG+AGG | - | chr4.2:75847919-75847938 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 75847769 | 75852785 | 75847769 | ID=MS.gene82200 |
chr4.2 | mRNA | 75847769 | 75852785 | 75847769 | ID=MS.gene82200.t1;Parent=MS.gene82200 |
chr4.2 | exon | 75847769 | 75848041 | 75847769 | ID=MS.gene82200.t1.exon1;Parent=MS.gene82200.t1 |
chr4.2 | CDS | 75847769 | 75848041 | 75847769 | ID=cds.MS.gene82200.t1;Parent=MS.gene82200.t1 |
chr4.2 | exon | 75850327 | 75850386 | 75850327 | ID=MS.gene82200.t1.exon2;Parent=MS.gene82200.t1 |
chr4.2 | CDS | 75850327 | 75850386 | 75850327 | ID=cds.MS.gene82200.t1;Parent=MS.gene82200.t1 |
chr4.2 | exon | 75850484 | 75850596 | 75850484 | ID=MS.gene82200.t1.exon3;Parent=MS.gene82200.t1 |
chr4.2 | CDS | 75850484 | 75850596 | 75850484 | ID=cds.MS.gene82200.t1;Parent=MS.gene82200.t1 |
chr4.2 | exon | 75851636 | 75851704 | 75851636 | ID=MS.gene82200.t1.exon4;Parent=MS.gene82200.t1 |
chr4.2 | CDS | 75851636 | 75851704 | 75851636 | ID=cds.MS.gene82200.t1;Parent=MS.gene82200.t1 |
chr4.2 | exon | 75852284 | 75852332 | 75852284 | ID=MS.gene82200.t1.exon5;Parent=MS.gene82200.t1 |
chr4.2 | CDS | 75852284 | 75852332 | 75852284 | ID=cds.MS.gene82200.t1;Parent=MS.gene82200.t1 |
chr4.2 | exon | 75852654 | 75852785 | 75852654 | ID=MS.gene82200.t1.exon6;Parent=MS.gene82200.t1 |
chr4.2 | CDS | 75852654 | 75852785 | 75852654 | ID=cds.MS.gene82200.t1;Parent=MS.gene82200.t1 |
Gene Sequence |
Protein sequence |