Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82318.t1 | XP_003599063.1 | 89 | 281 | 29 | 1 | 1 | 279 | 1 | 281 | 3.30E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82318.t1 | P16270 | 59.9 | 274 | 93 | 8 | 1 | 271 | 1 | 260 | 2.0e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82318.t1 | G7J1U2 | 89.0 | 281 | 29 | 1 | 1 | 279 | 1 | 281 | 2.4e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051201 | MS.gene82318 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene82318 | 0.812717 | 3.68E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene82318 | 0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene82318 | 0.800221 | 1.60E-48 | -1.69E-46 |
| MS.gene054617 | MS.gene82318 | 0.811442 | 6.99E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82318.t1 | MTR_3g027280 | 88.968 | 281 | 29 | 1 | 1 | 279 | 1 | 281 | 9.88e-178 | 491 |
| MS.gene82318.t1 | MTR_1g090957 | 84.229 | 279 | 34 | 2 | 1 | 279 | 1 | 269 | 1.01e-165 | 460 |
| MS.gene82318.t1 | MTR_1g090930 | 71.480 | 277 | 72 | 3 | 1 | 274 | 1 | 273 | 7.44e-132 | 375 |
| MS.gene82318.t1 | MTR_1g090937 | 68.000 | 275 | 81 | 3 | 1 | 274 | 1 | 269 | 2.45e-127 | 363 |
| MS.gene82318.t1 | MTR_3g054170 | 49.057 | 265 | 114 | 8 | 6 | 263 | 3 | 253 | 3.09e-69 | 215 |
| MS.gene82318.t1 | MTR_3g054180 | 49.813 | 267 | 111 | 9 | 6 | 263 | 7 | 259 | 2.18e-67 | 210 |
| MS.gene82318.t1 | MTR_3g054200 | 49.248 | 266 | 112 | 9 | 6 | 263 | 3 | 253 | 3.14e-66 | 207 |
| MS.gene82318.t1 | MTR_1g090973 | 46.996 | 283 | 127 | 12 | 1 | 274 | 1 | 269 | 8.94e-66 | 206 |
| MS.gene82318.t1 | MTR_0163s0020 | 48.014 | 277 | 124 | 8 | 1 | 270 | 2 | 265 | 1.22e-65 | 206 |
| MS.gene82318.t1 | MTR_0684s0020 | 48.014 | 277 | 124 | 8 | 1 | 270 | 1 | 264 | 1.46e-65 | 206 |
| MS.gene82318.t1 | MTR_1g090943 | 46.617 | 266 | 130 | 7 | 1 | 262 | 1 | 258 | 1.82e-63 | 201 |
| MS.gene82318.t1 | MTR_3g047140 | 47.292 | 277 | 128 | 11 | 1 | 270 | 1 | 266 | 1.13e-60 | 194 |
| MS.gene82318.t1 | MTR_1g090960 | 39.161 | 286 | 115 | 10 | 1 | 274 | 1 | 239 | 1.36e-45 | 154 |
| MS.gene82318.t1 | MTR_8g023510 | 39.535 | 258 | 134 | 11 | 13 | 260 | 10 | 255 | 4.01e-40 | 140 |
| MS.gene82318.t1 | MTR_8g068050 | 39.773 | 264 | 134 | 11 | 14 | 263 | 20 | 272 | 9.08e-39 | 144 |
| MS.gene82318.t1 | MTR_8g067980 | 39.669 | 242 | 126 | 11 | 35 | 263 | 24 | 258 | 2.16e-37 | 133 |
| MS.gene82318.t1 | MTR_5g031120 | 37.319 | 276 | 127 | 14 | 23 | 263 | 14 | 278 | 1.99e-33 | 123 |
| MS.gene82318.t1 | MTR_8g068040 | 37.838 | 259 | 127 | 14 | 23 | 263 | 18 | 260 | 4.16e-33 | 122 |
| MS.gene82318.t1 | MTR_8g068030 | 36.882 | 263 | 128 | 13 | 23 | 263 | 18 | 264 | 2.71e-32 | 120 |
| MS.gene82318.t1 | MTR_8g067990 | 37.838 | 222 | 120 | 10 | 54 | 262 | 41 | 257 | 1.54e-31 | 118 |
| MS.gene82318.t1 | MTR_4g023810 | 38.017 | 242 | 125 | 12 | 30 | 262 | 27 | 252 | 1.60e-31 | 118 |
| MS.gene82318.t1 | MTR_3g463370 | 33.984 | 256 | 111 | 6 | 18 | 262 | 12 | 220 | 7.56e-31 | 115 |
| MS.gene82318.t1 | MTR_8g067940 | 37.091 | 275 | 135 | 17 | 15 | 263 | 18 | 280 | 6.56e-30 | 114 |
| MS.gene82318.t1 | MTR_5g031100 | 35.273 | 275 | 133 | 14 | 23 | 263 | 14 | 277 | 7.06e-30 | 114 |
| MS.gene82318.t1 | MTR_5g031090 | 36.800 | 250 | 134 | 11 | 34 | 265 | 32 | 275 | 1.27e-29 | 113 |
| MS.gene82318.t1 | MTR_5g031140 | 35.417 | 288 | 148 | 17 | 5 | 263 | 7 | 285 | 2.06e-29 | 113 |
| MS.gene82318.t1 | MTR_5g031160 | 34.661 | 251 | 133 | 15 | 34 | 263 | 46 | 286 | 7.88e-28 | 108 |
| MS.gene82318.t1 | MTR_5g031030 | 35.772 | 246 | 138 | 10 | 34 | 265 | 35 | 274 | 5.46e-26 | 103 |
| MS.gene82318.t1 | MTR_8g067960 | 37.004 | 227 | 119 | 11 | 54 | 265 | 24 | 241 | 7.02e-26 | 102 |
| MS.gene82318.t1 | MTR_4g093080 | 34.457 | 267 | 137 | 13 | 18 | 263 | 9 | 258 | 1.82e-25 | 106 |
| MS.gene82318.t1 | MTR_7g115740 | 34.496 | 258 | 139 | 11 | 24 | 263 | 14 | 259 | 1.12e-23 | 100 |
| MS.gene82318.t1 | MTR_1g014240 | 32.819 | 259 | 142 | 13 | 35 | 273 | 37 | 283 | 1.88e-20 | 91.3 |
| MS.gene82318.t1 | MTR_4g093040 | 33.574 | 277 | 147 | 14 | 1 | 257 | 1 | 260 | 2.44e-20 | 90.9 |
| MS.gene82318.t1 | MTR_4g093040 | 37.500 | 184 | 90 | 9 | 93 | 257 | 1 | 178 | 1.51e-19 | 88.6 |
| MS.gene82318.t1 | MTR_8g067930 | 29.851 | 268 | 164 | 9 | 22 | 274 | 11 | 269 | 6.67e-19 | 86.7 |
| MS.gene82318.t1 | MTR_4g093050 | 30.483 | 269 | 148 | 11 | 21 | 264 | 12 | 266 | 8.79e-19 | 86.3 |
| MS.gene82318.t1 | MTR_7g116130 | 33.457 | 269 | 146 | 15 | 11 | 263 | 9 | 260 | 1.34e-18 | 85.9 |
| MS.gene82318.t1 | MTR_8g067720 | 29.389 | 262 | 158 | 11 | 23 | 271 | 17 | 264 | 7.80e-18 | 83.6 |
| MS.gene82318.t1 | MTR_8g067735 | 35.593 | 177 | 99 | 8 | 86 | 247 | 84 | 260 | 3.19e-17 | 81.6 |
| MS.gene82318.t1 | MTR_4g093140 | 33.451 | 284 | 147 | 17 | 1 | 263 | 1 | 263 | 4.06e-17 | 81.6 |
| MS.gene82318.t1 | MTR_4g093110 | 34.351 | 262 | 131 | 17 | 23 | 263 | 22 | 263 | 4.22e-17 | 81.3 |
| MS.gene82318.t1 | MTR_8g067630 | 32.000 | 225 | 130 | 10 | 35 | 246 | 30 | 244 | 9.34e-17 | 80.5 |
| MS.gene82318.t1 | MTR_4g093070 | 30.612 | 245 | 141 | 12 | 36 | 263 | 33 | 265 | 1.57e-15 | 76.6 |
| MS.gene82318.t1 | MTR_8g067690 | 32.995 | 197 | 109 | 9 | 86 | 263 | 101 | 293 | 3.48e-14 | 72.8 |
| MS.gene82318.t1 | MTR_1g048360 | 26.820 | 261 | 159 | 10 | 27 | 262 | 7 | 260 | 7.32e-12 | 65.9 |
| MS.gene82318.t1 | MTR_7g115740 | 33.962 | 159 | 89 | 7 | 24 | 175 | 14 | 163 | 7.93e-12 | 65.5 |
| MS.gene82318.t1 | MTR_8g068050 | 38.971 | 136 | 69 | 7 | 14 | 146 | 20 | 144 | 1.37e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82318.t1 | AT5G10530 | 32.967 | 273 | 141 | 16 | 33 | 279 | 17 | 273 | 5.63e-19 | 87.0 |
| MS.gene82318.t1 | AT5G65600 | 32.906 | 234 | 131 | 10 | 33 | 249 | 33 | 257 | 7.58e-19 | 86.7 |
| MS.gene82318.t1 | AT4G02410 | 30.620 | 258 | 135 | 13 | 31 | 260 | 22 | 263 | 1.15e-14 | 74.3 |
| MS.gene82318.t1 | AT5G03140 | 34.302 | 172 | 96 | 8 | 58 | 219 | 51 | 215 | 4.03e-12 | 66.6 |
Find 70 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCCAATATGGTATATAT+TGG | 0.224532 | 1.3:+53495937 | None:intergenic |
| CTATCTGGTGCTTCAATAAC+TGG | 0.245185 | 1.3:-53495719 | MS.gene82318:CDS |
| CACGGTCTTGAGAGAAATTA+AGG | 0.252048 | 1.3:+53495904 | None:intergenic |
| TAACCCCACCTGTGTCCCTT+TGG | 0.306128 | 1.3:-53496180 | MS.gene82318:CDS |
| GAAGGAAACGTCTTAAGATT+TGG | 0.308405 | 1.3:+53496313 | None:intergenic |
| AACCCCACCTGTGTCCCTTT+GGG | 0.330946 | 1.3:-53496179 | MS.gene82318:CDS |
| AAGGTTAGGTTTGGTCTATC+TGG | 0.336844 | 1.3:-53495734 | MS.gene82318:CDS |
| ATTCCAATATGGTATATATT+GGG | 0.357297 | 1.3:+53495938 | None:intergenic |
| AGTTTACATTGATTCCAATA+TGG | 0.362053 | 1.3:+53495927 | None:intergenic |
| AGTTCTTACAATCAATTTGT+TGG | 0.362152 | 1.3:-53495995 | MS.gene82318:CDS |
| CTGTGCTTCCCTACAAGGTT+AGG | 0.368255 | 1.3:-53495748 | MS.gene82318:CDS |
| TCTTTCTATATCAGAGGTTA+TGG | 0.377763 | 1.3:-53496118 | MS.gene82318:CDS |
| CTTCCCTACAAGGTTAGGTT+TGG | 0.384738 | 1.3:-53495743 | MS.gene82318:CDS |
| AATCTTAAGACGTTTCCTTC+TGG | 0.386619 | 1.3:-53496310 | MS.gene82318:CDS |
| AAGATATTCACTTTCTGAGT+TGG | 0.387155 | 1.3:+53496036 | None:intergenic |
| GATCCCAATATATACCATAT+TGG | 0.390659 | 1.3:-53495941 | MS.gene82318:CDS |
| AACAACACTCAATGTGTTAG+AGG | 0.403074 | 1.3:+53495826 | None:intergenic |
| AGATATTCACTTTCTGAGTT+GGG | 0.407397 | 1.3:+53496037 | None:intergenic |
| TATATTGGGATCATAACTAT+TGG | 0.418893 | 1.3:+53495952 | None:intergenic |
| TTTCTCTCAAGACCGTGAAT+TGG | 0.421787 | 1.3:-53495898 | MS.gene82318:CDS |
| CAACGCCTCAGACATGTTGC+AGG | 0.423076 | 1.3:-53495636 | MS.gene82318:CDS |
| TAGACCAAACCTAACCTTGT+AGG | 0.424009 | 1.3:+53495739 | None:intergenic |
| CTTAAGATTTGGAGTGAACT+TGG | 0.428673 | 1.3:+53496324 | None:intergenic |
| TTGCACACGACATCCATTCA+TGG | 0.434479 | 1.3:-53495694 | MS.gene82318:CDS |
| GACAAAGCTAGCAACATTGC+CGG | 0.444134 | 1.3:+53496150 | None:intergenic |
| GAAAACTGTGCTTCCCTACA+AGG | 0.451857 | 1.3:-53495753 | MS.gene82318:CDS |
| GATCATAACTATTGGCATAA+AGG | 0.458277 | 1.3:+53495960 | None:intergenic |
| AACTCAGAAAGTGAATATCT+TGG | 0.464182 | 1.3:-53496034 | MS.gene82318:CDS |
| CTTGGTGAAATTGAAGGAAA+GGG | 0.464927 | 1.3:+53496342 | None:intergenic |
| ATGCTCAGACGTTAAACAAT+GGG | 0.469712 | 1.3:-53496270 | MS.gene82318:CDS |
| CCTTCTGGTATAGCCTTCCA+AGG | 0.477880 | 1.3:-53496295 | MS.gene82318:CDS |
| GTACCAGAAGGAAGTCTCAT+AGG | 0.482594 | 1.3:+53496229 | None:intergenic |
| AAGCCTATGAGACTTCCTTC+TGG | 0.489552 | 1.3:-53496232 | MS.gene82318:CDS |
| CAAATCAACGATTTGAGCAA+TGG | 0.492987 | 1.3:+53495775 | None:intergenic |
| GTGAATTGGCAATTTGCGAG+TGG | 0.496973 | 1.3:-53495884 | MS.gene82318:CDS |
| TATGGTAGTGTTCCCACCGA+TGG | 0.506614 | 1.3:-53496100 | MS.gene82318:CDS |
| ACTCGCAAATTGCCAATTCA+CGG | 0.513035 | 1.3:+53495886 | None:intergenic |
| ACCTCTGATATAGAAAGAAA+AGG | 0.514211 | 1.3:+53496123 | None:intergenic |
| AGTGAACTTGGTGAAATTGA+AGG | 0.516116 | 1.3:+53496336 | None:intergenic |
| CCTAAAACAAGTTCATGAGT+TGG | 0.516836 | 1.3:+53496421 | None:intergenic |
| CTTCTGGTATAGCCTTCCAA+GGG | 0.517502 | 1.3:-53496294 | MS.gene82318:CDS |
| AAGTGGTCAATGACCATGAA+TGG | 0.522325 | 1.3:+53495681 | None:intergenic |
| CATTGCCGGCAGTGTCCCAA+AGG | 0.535638 | 1.3:+53496164 | None:intergenic |
| AGACCAAACCTAACCTTGTA+GGG | 0.535942 | 1.3:+53495740 | None:intergenic |
| ACTTGGTGAAATTGAAGGAA+AGG | 0.544189 | 1.3:+53496341 | None:intergenic |
| TTAACGTCTGAGCATCCCCT+TGG | 0.548177 | 1.3:+53496278 | None:intergenic |
| TATTCACTTTCTGAGTTGGG+TGG | 0.549853 | 1.3:+53496040 | None:intergenic |
| TAGTGTTCCCACCGATGGAT+TGG | 0.552701 | 1.3:-53496095 | MS.gene82318:CDS |
| GTGTCCCTTTGGGACACTGC+CGG | 0.557614 | 1.3:-53496169 | MS.gene82318:CDS |
| GTTAAGATACGACCAGTACT+TGG | 0.558514 | 1.3:+53496199 | None:intergenic |
| GTTGTTGTCACTTATGCCAA+TGG | 0.563705 | 1.3:-53495809 | MS.gene82318:CDS |
| TGTCCCAAAGGGACACAGGT+GGG | 0.573620 | 1.3:+53496176 | None:intergenic |
| GGTACAACTATACCAAGTAC+TGG | 0.573788 | 1.3:-53496211 | MS.gene82318:CDS |
| GTGTCCCAAAGGGACACAGG+TGG | 0.579527 | 1.3:+53496175 | None:intergenic |
| TGAATTGGCAATTTGCGAGT+GGG | 0.579950 | 1.3:-53495883 | MS.gene82318:CDS |
| CGTCTGAGCATCCCCTTGGA+AGG | 0.581798 | 1.3:+53496282 | None:intergenic |
| GCAGTGTCCCAAAGGGACAC+AGG | 0.595096 | 1.3:+53496172 | None:intergenic |
| GTCCCAAAGGGACACAGGTG+GGG | 0.598680 | 1.3:+53496177 | None:intergenic |
| AAAGAAGACCAATCCATCGG+TGG | 0.612891 | 1.3:+53496087 | None:intergenic |
| CCTTGGAAGGCTATACCAGA+AGG | 0.616936 | 1.3:+53496295 | None:intergenic |
| ATTGCCGGCAGTGTCCCAAA+GGG | 0.624562 | 1.3:+53496165 | None:intergenic |
| AAGAAGACCAATCCATCGGT+GGG | 0.625046 | 1.3:+53496088 | None:intergenic |
| CATGAGTTGGAAGATTTGTG+CGG | 0.625970 | 1.3:+53496434 | None:intergenic |
| ATTTGTGCGGTAAAATGCCA+TGG | 0.629153 | 1.3:+53496447 | None:intergenic |
| GATGCTCAGACGTTAAACAA+TGG | 0.639722 | 1.3:-53496271 | MS.gene82318:CDS |
| TATAGCCTGCAACATGTCTG+AGG | 0.643802 | 1.3:+53495631 | None:intergenic |
| CTTGGTATAGTTGTACCAGA+AGG | 0.647197 | 1.3:+53496217 | None:intergenic |
| AATAAAGAAGACCAATCCAT+CGG | 0.675815 | 1.3:+53496084 | None:intergenic |
| TTCTGGTATAGCCTTCCAAG+GGG | 0.682421 | 1.3:-53496293 | MS.gene82318:CDS |
| TGCTCAGACGTTAAACAATG+GGG | 0.710854 | 1.3:-53496269 | MS.gene82318:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCCAATATGGTATATATT+GGG | + | chr1.3:53496138-53496157 | None:intergenic | 20.0% |
| ! | AATGGTAGAAAAATTTCCAT+TGG | + | chr1.3:53496283-53496302 | None:intergenic | 25.0% |
| ! | AGTTCTTACAATCAATTTGT+TGG | - | chr1.3:53496078-53496097 | MS.gene82318:CDS | 25.0% |
| ! | GATTCCAATATGGTATATAT+TGG | + | chr1.3:53496139-53496158 | None:intergenic | 25.0% |
| ! | TATATTGGGATCATAACTAT+TGG | + | chr1.3:53496124-53496143 | None:intergenic | 25.0% |
| !!! | AGTTTACATTGATTCCAATA+TGG | + | chr1.3:53496149-53496168 | None:intergenic | 25.0% |
| AACTCAGAAAGTGAATATCT+TGG | - | chr1.3:53496039-53496058 | MS.gene82318:CDS | 30.0% | |
| AAGATATTCACTTTCTGAGT+TGG | + | chr1.3:53496040-53496059 | None:intergenic | 30.0% | |
| AATAAAGAAGACCAATCCAT+CGG | + | chr1.3:53495992-53496011 | None:intergenic | 30.0% | |
| ACCTCTGATATAGAAAGAAA+AGG | + | chr1.3:53495953-53495972 | None:intergenic | 30.0% | |
| AGATATTCACTTTCTGAGTT+GGG | + | chr1.3:53496039-53496058 | None:intergenic | 30.0% | |
| GATCATAACTATTGGCATAA+AGG | + | chr1.3:53496116-53496135 | None:intergenic | 30.0% | |
| GATCCCAATATATACCATAT+TGG | - | chr1.3:53496132-53496151 | MS.gene82318:CDS | 30.0% | |
| TCTTTCTATATCAGAGGTTA+TGG | - | chr1.3:53495955-53495974 | MS.gene82318:CDS | 30.0% | |
| ! | TCCTTTTCTTTCTATATCAG+AGG | - | chr1.3:53495949-53495968 | MS.gene82318:CDS | 30.0% |
| AACAACACTCAATGTGTTAG+AGG | + | chr1.3:53496250-53496269 | None:intergenic | 35.0% | |
| AATCTTAAGACGTTTCCTTC+TGG | - | chr1.3:53495763-53495782 | MS.gene82318:CDS | 35.0% | |
| ATGCTCAGACGTTAAACAAT+GGG | - | chr1.3:53495803-53495822 | MS.gene82318:CDS | 35.0% | |
| CAAATCAACGATTTGAGCAA+TGG | + | chr1.3:53496301-53496320 | None:intergenic | 35.0% | |
| CCTAAAACAAGTTCATGAGT+TGG | + | chr1.3:53495655-53495674 | None:intergenic | 35.0% | |
| CTTGGTGAAATTGAAGGAAA+GGG | + | chr1.3:53495734-53495753 | None:intergenic | 35.0% | |
| GAAGGAAACGTCTTAAGATT+TGG | + | chr1.3:53495763-53495782 | None:intergenic | 35.0% | |
| ! | ACTTGGTGAAATTGAAGGAA+AGG | + | chr1.3:53495735-53495754 | None:intergenic | 35.0% |
| ! | AGTGAACTTGGTGAAATTGA+AGG | + | chr1.3:53495740-53495759 | None:intergenic | 35.0% |
| ! | CTTAAGATTTGGAGTGAACT+TGG | + | chr1.3:53495752-53495771 | None:intergenic | 35.0% |
| !! | CCAACTCATGAACTTGTTTT+AGG | - | chr1.3:53495652-53495671 | MS.gene82318:CDS | 35.0% |
| !!! | CGTTGTTTTCAAGTTTGAAG+TGG | + | chr1.3:53496412-53496431 | None:intergenic | 35.0% |
| AAGTGGTCAATGACCATGAA+TGG | + | chr1.3:53496395-53496414 | None:intergenic | 40.0% | |
| ACTCGCAAATTGCCAATTCA+CGG | + | chr1.3:53496190-53496209 | None:intergenic | 40.0% | |
| AGACCAAACCTAACCTTGTA+GGG | + | chr1.3:53496336-53496355 | None:intergenic | 40.0% | |
| CACGGTCTTGAGAGAAATTA+AGG | + | chr1.3:53496172-53496191 | None:intergenic | 40.0% | |
| CTATCTGGTGCTTCAATAAC+TGG | - | chr1.3:53496354-53496373 | MS.gene82318:CDS | 40.0% | |
| CTTGGTATAGTTGTACCAGA+AGG | + | chr1.3:53495859-53495878 | None:intergenic | 40.0% | |
| GATGCTCAGACGTTAAACAA+TGG | - | chr1.3:53495802-53495821 | MS.gene82318:CDS | 40.0% | |
| GGTACAACTATACCAAGTAC+TGG | - | chr1.3:53495862-53495881 | MS.gene82318:CDS | 40.0% | |
| GTTAAGATACGACCAGTACT+TGG | + | chr1.3:53495877-53495896 | None:intergenic | 40.0% | |
| TAGACCAAACCTAACCTTGT+AGG | + | chr1.3:53496337-53496356 | None:intergenic | 40.0% | |
| TGAATTGGCAATTTGCGAGT+GGG | - | chr1.3:53496190-53496209 | MS.gene82318:CDS | 40.0% | |
| TGCTCAGACGTTAAACAATG+GGG | - | chr1.3:53495804-53495823 | MS.gene82318:CDS | 40.0% | |
| TTTCTCTCAAGACCGTGAAT+TGG | - | chr1.3:53496175-53496194 | MS.gene82318:CDS | 40.0% | |
| ! | AAGGTTAGGTTTGGTCTATC+TGG | - | chr1.3:53496339-53496358 | MS.gene82318:CDS | 40.0% |
| ! | CATGAGTTGGAAGATTTGTG+CGG | + | chr1.3:53495642-53495661 | None:intergenic | 40.0% |
| ! | GTTGTTGTCACTTATGCCAA+TGG | - | chr1.3:53496264-53496283 | MS.gene82318:CDS | 40.0% |
| ! | TATTCACTTTCTGAGTTGGG+TGG | + | chr1.3:53496036-53496055 | None:intergenic | 40.0% |
| AAAGAAGACCAATCCATCGG+TGG | + | chr1.3:53495989-53496008 | None:intergenic | 45.0% | |
| AAGAAGACCAATCCATCGGT+GGG | + | chr1.3:53495988-53496007 | None:intergenic | 45.0% | |
| AAGCCTATGAGACTTCCTTC+TGG | - | chr1.3:53495841-53495860 | MS.gene82318:CDS | 45.0% | |
| CTTCCCTACAAGGTTAGGTT+TGG | - | chr1.3:53496330-53496349 | MS.gene82318:CDS | 45.0% | |
| CTTCTGGTATAGCCTTCCAA+GGG | - | chr1.3:53495779-53495798 | MS.gene82318:CDS | 45.0% | |
| GAAAACTGTGCTTCCCTACA+AGG | - | chr1.3:53496320-53496339 | MS.gene82318:CDS | 45.0% | |
| GACAAAGCTAGCAACATTGC+CGG | + | chr1.3:53495926-53495945 | None:intergenic | 45.0% | |
| GTACCAGAAGGAAGTCTCAT+AGG | + | chr1.3:53495847-53495866 | None:intergenic | 45.0% | |
| GTGAATTGGCAATTTGCGAG+TGG | - | chr1.3:53496189-53496208 | MS.gene82318:CDS | 45.0% | |
| TATAGCCTGCAACATGTCTG+AGG | + | chr1.3:53496445-53496464 | None:intergenic | 45.0% | |
| TTCTGGTATAGCCTTCCAAG+GGG | - | chr1.3:53495780-53495799 | MS.gene82318:CDS | 45.0% | |
| TTGCACACGACATCCATTCA+TGG | - | chr1.3:53496379-53496398 | MS.gene82318:CDS | 45.0% | |
| ! | GGTGGAATCACAGTGTTTTG+TGG | + | chr1.3:53496018-53496037 | None:intergenic | 45.0% |
| CCTTCTGGTATAGCCTTCCA+AGG | - | chr1.3:53495778-53495797 | MS.gene82318:CDS | 50.0% | |
| CCTTGGAAGGCTATACCAGA+AGG | + | chr1.3:53495781-53495800 | None:intergenic | 50.0% | |
| CTGTGCTTCCCTACAAGGTT+AGG | - | chr1.3:53496325-53496344 | MS.gene82318:CDS | 50.0% | |
| TAGTGTTCCCACCGATGGAT+TGG | - | chr1.3:53495978-53495997 | MS.gene82318:CDS | 50.0% | |
| TTAACGTCTGAGCATCCCCT+TGG | + | chr1.3:53495798-53495817 | None:intergenic | 50.0% | |
| ! | TATGGTAGTGTTCCCACCGA+TGG | - | chr1.3:53495973-53495992 | MS.gene82318:CDS | 50.0% |
| AACCCCACCTGTGTCCCTTT+GGG | - | chr1.3:53495894-53495913 | MS.gene82318:CDS | 55.0% | |
| ATTGCCGGCAGTGTCCCAAA+GGG | + | chr1.3:53495911-53495930 | None:intergenic | 55.0% | |
| CAACGCCTCAGACATGTTGC+AGG | - | chr1.3:53496437-53496456 | MS.gene82318:CDS | 55.0% | |
| TAACCCCACCTGTGTCCCTT+TGG | - | chr1.3:53495893-53495912 | MS.gene82318:CDS | 55.0% | |
| TGTCCCAAAGGGACACAGGT+GGG | + | chr1.3:53495900-53495919 | None:intergenic | 55.0% | |
| CATTGCCGGCAGTGTCCCAA+AGG | + | chr1.3:53495912-53495931 | None:intergenic | 60.0% | |
| CGTCTGAGCATCCCCTTGGA+AGG | + | chr1.3:53495794-53495813 | None:intergenic | 60.0% | |
| GCAGTGTCCCAAAGGGACAC+AGG | + | chr1.3:53495904-53495923 | None:intergenic | 60.0% | |
| GTCCCAAAGGGACACAGGTG+GGG | + | chr1.3:53495899-53495918 | None:intergenic | 60.0% | |
| GTGTCCCAAAGGGACACAGG+TGG | + | chr1.3:53495901-53495920 | None:intergenic | 60.0% | |
| !! | GTGTCCCTTTGGGACACTGC+CGG | - | chr1.3:53495904-53495923 | MS.gene82318:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53495628 | 53496467 | 53495628 | ID=MS.gene82318 |
| chr1.3 | mRNA | 53495628 | 53496467 | 53495628 | ID=MS.gene82318.t1;Parent=MS.gene82318 |
| chr1.3 | exon | 53495628 | 53496467 | 53495628 | ID=MS.gene82318.t1.exon1;Parent=MS.gene82318.t1 |
| chr1.3 | CDS | 53495628 | 53496467 | 53495628 | ID=cds.MS.gene82318.t1;Parent=MS.gene82318.t1 |
| Gene Sequence |
| Protein sequence |
