Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82706.t1 | XP_003600054.1 | 99.6 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 4.50E-139 | 503.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82706.t1 | Q5M759 | 84.0 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 7.3e-122 | 438.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82706.t1 | G7IXK4 | 99.6 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 3.3e-139 | 503.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82706 | MS.gene94059 | PPI |
| MS.gene82706 | MS.gene016363 | PPI |
| MS.gene82706 | MS.gene028008 | PPI |
| MS.gene82706 | MS.gene72906 | PPI |
| MS.gene82706 | MS.gene59808 | PPI |
| MS.gene82706 | MS.gene77803 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82706.t1 | MTR_3g051210 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 513 |
| MS.gene82706.t1 | MTR_7g033650 | 97.610 | 251 | 6 | 0 | 1 | 251 | 1 | 251 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82706.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 2.18e-161 | 447 |
| MS.gene82706.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 2.18e-161 | 447 |
| MS.gene82706.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 2.18e-161 | 447 |
| MS.gene82706.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 2.18e-161 | 447 |
| MS.gene82706.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 2.18e-161 | 447 |
| MS.gene82706.t1 | AT4G27040 | 84.000 | 250 | 40 | 0 | 1 | 250 | 1 | 250 | 2.18e-161 | 447 |
Find 57 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCAATACAAGAAAT+TGG | 0.228131 | 3.1:+38174990 | MS.gene82706:CDS |
| TCACAAATATTTCAGGTTCT+TGG | 0.313573 | 3.1:+38177098 | MS.gene82706:intron |
| GATCCCTTGGCCTCGAATAA+AGG | 0.333392 | 3.1:+38175966 | MS.gene82706:CDS |
| GTTTGTAACCCTCCAATTCC+AGG | 0.370349 | 3.1:-38174955 | None:intergenic |
| AAGACGGAAAACGACGGTAT+TGG | 0.400764 | 3.1:+38178654 | MS.gene82706:CDS |
| AATTCCTGTCAAAGACGAAA+TGG | 0.400844 | 3.1:-38178693 | None:intergenic |
| AGGCGACTATCTTGGACTTC+GGG | 0.406354 | 3.1:+38178444 | MS.gene82706:CDS |
| ATGAGAAGGAGACCTGGAAT+TGG | 0.416762 | 3.1:+38174943 | MS.gene82706:CDS |
| ATTCCTGTCAAAGACGAAAT+GGG | 0.437105 | 3.1:-38178692 | None:intergenic |
| GGAGTTGACAGAGTTCTTGC+AGG | 0.437410 | 3.1:-38176819 | None:intergenic |
| TGGGCCGAGTTATTGGGAAT+TGG | 0.444703 | 3.1:+38175993 | MS.gene82706:CDS |
| AAGGCGACTATCTTGGACTT+CGG | 0.444993 | 3.1:+38178443 | MS.gene82706:CDS |
| GTTGATCAATCCACCATTGC+GGG | 0.445907 | 3.1:-38176797 | None:intergenic |
| AAGTAGAAAGGCGACTATCT+TGG | 0.450394 | 3.1:+38178436 | MS.gene82706:CDS |
| TGGTCTTTGTTCAGCTCAGT+TGG | 0.452013 | 3.1:-38177173 | None:intergenic |
| CACGAGATGTGTGCTAAAGT+TGG | 0.473986 | 3.1:+38175939 | MS.gene82706:CDS |
| TATTTCAGGTTCTTGGTAGC+GGG | 0.474553 | 3.1:+38177105 | MS.gene82706:intron |
| TAATGTATCAAGTGCATCAA+TGG | 0.476110 | 3.1:-38178472 | None:intergenic |
| TCAAATTGTGGACATTTGCT+TGG | 0.478737 | 3.1:+38176765 | MS.gene82706:CDS |
| AGGGATCAATACAAGAAATT+GGG | 0.488849 | 3.1:+38174991 | MS.gene82706:CDS |
| TTCAAGCTGAGAACGAAAAG+TGG | 0.490188 | 3.1:-38175061 | None:intergenic |
| GGTGATTTCTATTATGAACT+TGG | 0.493886 | 3.1:+38176014 | MS.gene82706:CDS |
| ATATTTCAGGTTCTTGGTAG+CGG | 0.497679 | 3.1:+38177104 | MS.gene82706:intron |
| AAAACCTTTATTCGAGGCCA+AGG | 0.505152 | 3.1:-38175970 | None:intergenic |
| TGAAACTGTGATCTGAATGC+AGG | 0.507639 | 3.1:-38175918 | None:intergenic |
| AGAAGGAGACCTGGAATTGG+AGG | 0.513896 | 3.1:+38174946 | MS.gene82706:CDS |
| TTGAAAATGAGAAGGAGACC+TGG | 0.524652 | 3.1:+38174937 | None:intergenic |
| TGAAATTCTTGAACTTGCCC+AGG | 0.525315 | 3.1:+38177199 | MS.gene82706:CDS |
| GGGTTTGAAGTTATTTCTGT+TGG | 0.525591 | 3.1:+38177125 | MS.gene82706:CDS |
| GATCAGAACTGATATGATGA+AGG | 0.529766 | 3.1:+38175029 | MS.gene82706:CDS |
| CTTGGTTTACTTCAGGGTCA+AGG | 0.537128 | 3.1:+38178396 | MS.gene82706:intron |
| AGCACGCAGGCAATCATCCT+CGG | 0.550043 | 3.1:-38176878 | None:intergenic |
| TAAAGTTGGAGTTGATCCCT+TGG | 0.550228 | 3.1:+38175953 | MS.gene82706:CDS |
| ATTGATGATGGCCACAAAGA+CGG | 0.551263 | 3.1:+38178638 | MS.gene82706:CDS |
| TACAAACAGCTGCAGCAGCA+AGG | 0.571240 | 3.1:+38174971 | MS.gene82706:CDS |
| GCTACTAGACCCCGCAATGG+TGG | 0.582093 | 3.1:+38176787 | MS.gene82706:CDS |
| ACAAACAGCTGCAGCAGCAA+GGG | 0.585992 | 3.1:+38174972 | MS.gene82706:CDS |
| TTCCTGTCAAAGACGAAATG+GGG | 0.586176 | 3.1:-38178691 | None:intergenic |
| GCGTGCTATCAGTAAGCTGA+AGG | 0.586793 | 3.1:+38176894 | MS.gene82706:CDS |
| ATCACCAATTCCCAATAACT+CGG | 0.596928 | 3.1:-38175997 | None:intergenic |
| TGACTGTCGATGAAGTAGAA+AGG | 0.601998 | 3.1:+38178424 | MS.gene82706:CDS |
| GGACTTGCAATGATTGATGA+TGG | 0.603574 | 3.1:+38178626 | MS.gene82706:CDS |
| AAACCTTTATTCGAGGCCAA+GGG | 0.607541 | 3.1:-38175969 | None:intergenic |
| TATCAAGTGCATCAATGGCA+CGG | 0.623758 | 3.1:-38178467 | None:intergenic |
| TCAGCTCAGTTGGAACCGAA+CGG | 0.627094 | 3.1:-38177163 | None:intergenic |
| GGTTGATCAATCCACCATTG+CGG | 0.641823 | 3.1:-38176798 | None:intergenic |
| CAAGTTCAAGAATTTCATTG+TGG | 0.649563 | 3.1:-38177193 | None:intergenic |
| CTAGACAGGAGTTCAAATTG+TGG | 0.654031 | 3.1:+38176753 | MS.gene82706:intron |
| GAAGGAGACCTGGAATTGGA+GGG | 0.656202 | 3.1:+38174947 | MS.gene82706:CDS |
| TCCTGTCAAAGACGAAATGG+GGG | 0.657833 | 3.1:-38178690 | None:intergenic |
| GAAACTGTGATCTGAATGCA+GGG | 0.660160 | 3.1:-38175917 | None:intergenic |
| TGACCGTGGAGTTGTTTCCG+AGG | 0.667979 | 3.1:+38176861 | MS.gene82706:CDS |
| TTGATCAATCCACCATTGCG+GGG | 0.670271 | 3.1:-38176796 | None:intergenic |
| TTGGCTACTAGACCCCGCAA+TGG | 0.670353 | 3.1:+38176784 | MS.gene82706:CDS |
| GCCACAAAGACGGAAAACGA+CGG | 0.674550 | 3.1:+38178648 | MS.gene82706:CDS |
| CATCCTCGGAAACAACTCCA+CGG | 0.702872 | 3.1:-38176864 | None:intergenic |
| TCAGCTTACTGATAGCACGC+AGG | 0.720093 | 3.1:-38176891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAGTAAAATTTAA+CGG | - | chr3.1:38176703-38176722 | None:intergenic | 10.0% |
| !!! | AAAAAATTGATTTTTAATTC+TGG | + | chr3.1:38175144-38175163 | MS.gene82706:intron | 10.0% |
| !!! | AAAAATTGATTTTTAATTCT+GGG | + | chr3.1:38175145-38175164 | MS.gene82706:intron | 10.0% |
| !!! | TTTTTTTTTTGTTATAGAAA+TGG | + | chr3.1:38177608-38177627 | MS.gene82706:intron | 10.0% |
| !! | AAATATTAACAGTCAAAATT+TGG | - | chr3.1:38176945-38176964 | None:intergenic | 15.0% |
| !! | AATAATTGAGAATAAAACAT+AGG | + | chr3.1:38176145-38176164 | MS.gene82706:intron | 15.0% |
| !! | ATTATTAAAAAGTTTGACTA+AGG | - | chr3.1:38176450-38176469 | None:intergenic | 15.0% |
| !! | TAATTTATAAAAATCAATCC+AGG | - | chr3.1:38176672-38176691 | None:intergenic | 15.0% |
| !!! | ATATATTTTTTGTGATTGAT+TGG | + | chr3.1:38175111-38175130 | MS.gene82706:intron | 15.0% |
| !!! | ATTTTGACTGTTAATATTTA+TGG | + | chr3.1:38176946-38176965 | MS.gene82706:intron | 15.0% |
| !! | CTGAAATTCATCAAATAATT+AGG | + | chr3.1:38177928-38177947 | MS.gene82706:intron | 20.0% |
| !! | TAACAATCTACACATAAAAA+AGG | - | chr3.1:38177806-38177825 | None:intergenic | 20.0% |
| !! | TATTACATGTTATCAGAAAA+AGG | - | chr3.1:38178549-38178568 | None:intergenic | 20.0% |
| !! | TGATTAAGAAAATCAATTGT+TGG | - | chr3.1:38176072-38176091 | None:intergenic | 20.0% |
| !!! | ATAGATTCAAGTTGAAATAA+TGG | - | chr3.1:38177871-38177890 | None:intergenic | 20.0% |
| !!! | ATTAGTTTAAATTCCACTAA+TGG | + | chr3.1:38175859-38175878 | MS.gene82706:intron | 20.0% |
| !!! | CAGATTTTATTGCATTAAAT+AGG | + | chr3.1:38176266-38176285 | MS.gene82706:intron | 20.0% |
| !!! | TGTTTGGATTGATTTATTTT+AGG | + | chr3.1:38177428-38177447 | MS.gene82706:intron | 20.0% |
| !!! | TTTGTTGATTTTTAGAACTT+GGG | + | chr3.1:38175231-38175250 | MS.gene82706:intron | 20.0% |
| ! | AAAGATAACATCAACAAACT+AGG | - | chr3.1:38177707-38177726 | None:intergenic | 25.0% |
| ! | AAATTCAAATGTGGTTGAAT+TGG | + | chr3.1:38175327-38175346 | MS.gene82706:intron | 25.0% |
| ! | AAATTTGAATAACAGAAACG+TGG | + | chr3.1:38176227-38176246 | MS.gene82706:intron | 25.0% |
| ! | AAGATAACATCAACAAACTA+GGG | - | chr3.1:38177706-38177725 | None:intergenic | 25.0% |
| ! | AATTCAAATGTGGTTGAATT+GGG | + | chr3.1:38175328-38175347 | MS.gene82706:intron | 25.0% |
| ! | ACTGTTAATATTTATGGATG+TGG | + | chr3.1:38176952-38176971 | MS.gene82706:intron | 25.0% |
| ! | ATAAACACTTACATGATAAG+AGG | + | chr3.1:38177638-38177657 | MS.gene82706:intron | 25.0% |
| ! | ATCTTTATAACTTATGAGTG+TGG | + | chr3.1:38177721-38177740 | MS.gene82706:intron | 25.0% |
| ! | ATGTTAAAAGGAACTAATTG+AGG | - | chr3.1:38176405-38176424 | None:intergenic | 25.0% |
| ! | ATTGCAACAAAAACTAAAAG+TGG | - | chr3.1:38175834-38175853 | None:intergenic | 25.0% |
| ! | ATTTCTATTATGAACTTGGT+TGG | + | chr3.1:38176018-38176037 | MS.gene82706:intron | 25.0% |
| ! | CATTGATAAATAGATCAAAC+AGG | + | chr3.1:38177380-38177399 | MS.gene82706:intron | 25.0% |
| ! | CATTGTGATTATAATTAGCA+AGG | + | chr3.1:38176122-38176141 | MS.gene82706:intron | 25.0% |
| ! | GATGTGATATTAAGAAGTAA+GGG | - | chr3.1:38177958-38177977 | None:intergenic | 25.0% |
| ! | GGAAATTTACCTGATTATTA+AGG | + | chr3.1:38176354-38176373 | MS.gene82706:intron | 25.0% |
| ! | TACCTGATTATTAAGGATAA+AGG | + | chr3.1:38176361-38176380 | MS.gene82706:intron | 25.0% |
| ! | TAGATAAGTATATCCAAACA+AGG | - | chr3.1:38177239-38177258 | None:intergenic | 25.0% |
| ! | TGATGTGATATTAAGAAGTA+AGG | - | chr3.1:38177959-38177978 | None:intergenic | 25.0% |
| ! | TTAATTGAATAGATCATTCC+TGG | + | chr3.1:38176651-38176670 | MS.gene82706:intron | 25.0% |
| !! | AACAGTCAAAATTTGGTTTA+AGG | - | chr3.1:38176938-38176957 | None:intergenic | 25.0% |
| !! | ACAGTCAAAATTTGGTTTAA+GGG | - | chr3.1:38176937-38176956 | None:intergenic | 25.0% |
| !! | ATGCTTTGCTATATATGTTT+AGG | + | chr3.1:38175635-38175654 | MS.gene82706:intron | 25.0% |
| !! | GGATAAAGATTCTTCAATTT+TGG | - | chr3.1:38176534-38176553 | None:intergenic | 25.0% |
| !! | TGCTTTGCTATATATGTTTA+GGG | + | chr3.1:38175636-38175655 | MS.gene82706:intron | 25.0% |
| !! | TTTTAGACTTATATAGCTCT+TGG | + | chr3.1:38178378-38178397 | MS.gene82706:intron | 25.0% |
| !!! | ATTATTTCTATAAGATGTCC+AGG | + | chr3.1:38177534-38177553 | MS.gene82706:intron | 25.0% |
| !!! | GTTTGTTGATTTTTAGAACT+TGG | + | chr3.1:38175230-38175249 | MS.gene82706:intron | 25.0% |
| AAAGAAAAAACTTGTCCGTT+CGG | + | chr3.1:38177148-38177167 | MS.gene82706:CDS | 30.0% | |
| AAGGGATCAATACAAGAAAT+TGG | + | chr3.1:38174990-38175009 | MS.gene82706:CDS | 30.0% | |
| AAGTAACATGTGAATATCTG+TGG | + | chr3.1:38177776-38177795 | MS.gene82706:intron | 30.0% | |
| AATATCACATCACGAAAATC+CGG | + | chr3.1:38177967-38177986 | MS.gene82706:intron | 30.0% | |
| ACTCTCATGTAATGATTACA+AGG | - | chr3.1:38175599-38175618 | None:intergenic | 30.0% | |
| AGGGATCAATACAAGAAATT+GGG | + | chr3.1:38174991-38175010 | MS.gene82706:CDS | 30.0% | |
| ATAATAGTGGCTTAAACTGT+CGG | + | chr3.1:38175516-38175535 | MS.gene82706:intron | 30.0% | |
| ATATCTTTATCACCAAGTTC+TGG | + | chr3.1:38176484-38176503 | MS.gene82706:intron | 30.0% | |
| ATCCTTGCAAAATTCAAATG+TGG | + | chr3.1:38175318-38175337 | MS.gene82706:intron | 30.0% | |
| ATGACCAGTACAATGTTAAA+AGG | - | chr3.1:38176417-38176436 | None:intergenic | 30.0% | |
| ATTCAAATGTGGTTGAATTG+GGG | + | chr3.1:38175329-38175348 | MS.gene82706:intron | 30.0% | |
| ATTGCATGATGTGGATAAAT+TGG | + | chr3.1:38177342-38177361 | MS.gene82706:intron | 30.0% | |
| CAAGTTCAAGAATTTCATTG+TGG | - | chr3.1:38177196-38177215 | None:intergenic | 30.0% | |
| CACCTTTATCCTTAATAATC+AGG | - | chr3.1:38176366-38176385 | None:intergenic | 30.0% | |
| CCATAATACATATGTCAATC+AGG | - | chr3.1:38176336-38176355 | None:intergenic | 30.0% | |
| CCTGATTGACATATGTATTA+TGG | + | chr3.1:38176333-38176352 | MS.gene82706:intron | 30.0% | |
| GAACAAAACTCTATTGACAT+TGG | - | chr3.1:38175697-38175716 | None:intergenic | 30.0% | |
| GATAAATAGATCAAACAGGA+TGG | + | chr3.1:38177384-38177403 | MS.gene82706:intron | 30.0% | |
| GGTGATTTCTATTATGAACT+TGG | + | chr3.1:38176014-38176033 | MS.gene82706:CDS | 30.0% | |
| GTTAACAGTGTTATCTATTG+CGG | - | chr3.1:38175571-38175590 | None:intergenic | 30.0% | |
| GTTTAAATTCCACTAATGGT+TGG | + | chr3.1:38175863-38175882 | MS.gene82706:intron | 30.0% | |
| TAATGTATCAAGTGCATCAA+TGG | - | chr3.1:38178475-38178494 | None:intergenic | 30.0% | |
| TATGTGTAGATTGTTACTAG+AGG | + | chr3.1:38177810-38177829 | MS.gene82706:intron | 30.0% | |
| TGAAGGTCTTGAAACTTAAA+GGG | + | chr3.1:38175737-38175756 | MS.gene82706:intron | 30.0% | |
| TGATGTGTCACAAATATTTC+AGG | + | chr3.1:38177091-38177110 | MS.gene82706:intron | 30.0% | |
| TGTAATCATTACATGAGAGT+GGG | + | chr3.1:38175599-38175618 | MS.gene82706:intron | 30.0% | |
| TTCAGTATCCATGAAATTTG+AGG | - | chr3.1:38178579-38178598 | None:intergenic | 30.0% | |
| TTGAAGGTCTTGAAACTTAA+AGG | + | chr3.1:38175736-38175755 | MS.gene82706:intron | 30.0% | |
| TTGATGAAAGTTTGTAGCTT+TGG | + | chr3.1:38175276-38175295 | MS.gene82706:intron | 30.0% | |
| TTGTAATCATTACATGAGAG+TGG | + | chr3.1:38175598-38175617 | MS.gene82706:intron | 30.0% | |
| TTTGAGAGATCTTATGCAAA+CGG | + | chr3.1:38177482-38177501 | MS.gene82706:intron | 30.0% | |
| ! | AACCACATTTGAATTTTGCA+AGG | - | chr3.1:38175323-38175342 | None:intergenic | 30.0% |
| ! | AATGTTAGCCTCAAATTTCA+TGG | + | chr3.1:38178568-38178587 | MS.gene82706:intron | 30.0% |
| ! | AGTTCCTTTTAACATTGTAC+TGG | + | chr3.1:38176410-38176429 | MS.gene82706:intron | 30.0% |
| ! | TCTTTACTATTTCTCATCTC+TGG | - | chr3.1:38176307-38176326 | None:intergenic | 30.0% |
| ! | TGTGTGCTTTTATATACTGT+TGG | + | chr3.1:38178171-38178190 | MS.gene82706:intron | 30.0% |
| ! | TTGGTTATTGCTATTGTTGT+TGG | + | chr3.1:38178129-38178148 | MS.gene82706:intron | 30.0% |
| !! | ATTCTGACTTGCATGTATTT+TGG | + | chr3.1:38176997-38177016 | MS.gene82706:intron | 30.0% |
| !! | ATTTTGAACTCTCTTGCTAT+TGG | + | chr3.1:38178073-38178092 | MS.gene82706:intron | 30.0% |
| !! | GCTGTTTTCATAAATTATCC+TGG | - | chr3.1:38177555-38177574 | None:intergenic | 30.0% |
| !! | TCACAAATATTTCAGGTTCT+TGG | + | chr3.1:38177098-38177117 | MS.gene82706:intron | 30.0% |
| !! | TGAATTGGGGTTTAATTTTG+AGG | + | chr3.1:38175342-38175361 | MS.gene82706:intron | 30.0% |
| !! | TGATTTTTAATTCTGGGTGT+TGG | + | chr3.1:38175151-38175170 | MS.gene82706:intron | 30.0% |
| !!! | ATGTCAATAGAGTTTTGTTC+AGG | + | chr3.1:38175697-38175716 | MS.gene82706:intron | 30.0% |
| !!! | TGATTTTTAGAACTTGGGTT+TGG | + | chr3.1:38175236-38175255 | MS.gene82706:intron | 30.0% |
| !!! | TGTCAATAGAGTTTTGTTCA+GGG | + | chr3.1:38175698-38175717 | MS.gene82706:intron | 30.0% |
| AAAAGTCATGGAGCAAAGTT+AGG | + | chr3.1:38177834-38177853 | MS.gene82706:intron | 35.0% | |
| AATCAATCCAAACATACCCT+AGG | - | chr3.1:38177422-38177441 | None:intergenic | 35.0% | |
| AATGGCCAATTTGTGATTAG+AGG | + | chr3.1:38175472-38175491 | MS.gene82706:intron | 35.0% | |
| AATTCCTGTCAAAGACGAAA+TGG | - | chr3.1:38178696-38178715 | None:intergenic | 35.0% | |
| AGAGATTGTTACATGCATTC+TGG | + | chr3.1:38177046-38177065 | MS.gene82706:intron | 35.0% | |
| ATAGCTCTTGGTTTACTTCA+GGG | + | chr3.1:38178390-38178409 | MS.gene82706:intron | 35.0% | |
| ATCACCAATTCCCAATAACT+CGG | - | chr3.1:38176000-38176019 | None:intergenic | 35.0% | |
| ATGGTTATGGTATAGACCTA+GGG | + | chr3.1:38177403-38177422 | MS.gene82706:intron | 35.0% | |
| ATTCCTGTCAAAGACGAAAT+GGG | - | chr3.1:38178695-38178714 | None:intergenic | 35.0% | |
| CAAGAAAGTTCATAATCTCG+TGG | - | chr3.1:38177310-38177329 | None:intergenic | 35.0% | |
| CATGAAAAGATTCCATCTGT+CGG | + | chr3.1:38178303-38178322 | MS.gene82706:intron | 35.0% | |
| GATCAGAACTGATATGATGA+AGG | + | chr3.1:38175029-38175048 | MS.gene82706:CDS | 35.0% | |
| GTGTTGTCAAATATTGACCA+TGG | + | chr3.1:38175418-38175437 | MS.gene82706:intron | 35.0% | |
| GTTACTAGAGGAAAAAGTCA+TGG | + | chr3.1:38177822-38177841 | MS.gene82706:intron | 35.0% | |
| TAATCACAAATTGGCCATTG+CGG | - | chr3.1:38175471-38175490 | None:intergenic | 35.0% | |
| TAGATCAAACAGGATGGTTA+TGG | + | chr3.1:38177390-38177409 | MS.gene82706:intron | 35.0% | |
| TATAGCTCTTGGTTTACTTC+AGG | + | chr3.1:38178389-38178408 | MS.gene82706:intron | 35.0% | |
| TCAAATTGTGGACATTTGCT+TGG | + | chr3.1:38176765-38176784 | MS.gene82706:CDS | 35.0% | |
| TGTAACAATCTCTCAGTATG+AGG | - | chr3.1:38177039-38177058 | None:intergenic | 35.0% | |
| TTGTAGACGTTATCTCGTTA+TGG | + | chr3.1:38176573-38176592 | MS.gene82706:intron | 35.0% | |
| ! | AGCACTTATTTCTCCTTGTT+TGG | + | chr3.1:38177223-38177242 | MS.gene82706:intron | 35.0% |
| ! | ATTGAGTTGTTTATCCAAGC+AGG | + | chr3.1:38177679-38177698 | MS.gene82706:intron | 35.0% |
| ! | CAAAATTTGGTTTAAGGGCA+TGG | - | chr3.1:38176932-38176951 | None:intergenic | 35.0% |
| ! | TAGGTATAGTGGCAACATTT+TGG | + | chr3.1:38178009-38178028 | MS.gene82706:intron | 35.0% |
| ! | TGTTTAGGGTTGCTAATTGA+TGG | + | chr3.1:38175650-38175669 | MS.gene82706:intron | 35.0% |
| !! | AAAGTTTGTAGCTTTGGAGA+TGG | + | chr3.1:38175282-38175301 | MS.gene82706:intron | 35.0% |
| !! | AAGTTTGTAGCTTTGGAGAT+GGG | + | chr3.1:38175283-38175302 | MS.gene82706:intron | 35.0% |
| !! | ATATTTCAGGTTCTTGGTAG+CGG | + | chr3.1:38177104-38177123 | MS.gene82706:intron | 35.0% |
| !! | GGGTTTGAAGTTATTTCTGT+TGG | + | chr3.1:38177125-38177144 | MS.gene82706:CDS | 35.0% |
| !! | TACTATAGGAGTTTGGTGTT+AGG | + | chr3.1:38177990-38178009 | MS.gene82706:intron | 35.0% |
| !! | TATTGTTGTTGGTCTTGTCT+TGG | + | chr3.1:38178140-38178159 | MS.gene82706:intron | 35.0% |
| !!! | GAACTTGGGTTTGGATTTTT+TGG | + | chr3.1:38175245-38175264 | MS.gene82706:intron | 35.0% |
| !!! | GTCAATAGAGTTTTGTTCAG+GGG | + | chr3.1:38175699-38175718 | MS.gene82706:intron | 35.0% |
| !!! | TGGATTTTTTATGACCGCAA+TGG | + | chr3.1:38175454-38175473 | MS.gene82706:intron | 35.0% |
| AAAAAGCAGGAAAGTGGAAG+AGG | - | chr3.1:38177282-38177301 | None:intergenic | 40.0% | |
| AAAACCTTTATTCGAGGCCA+AGG | - | chr3.1:38175973-38175992 | None:intergenic | 40.0% | |
| AAACCTTTATTCGAGGCCAA+GGG | - | chr3.1:38175972-38175991 | None:intergenic | 40.0% | |
| AAGGAGAAATAAGTGCTACC+TGG | - | chr3.1:38177220-38177239 | None:intergenic | 40.0% | |
| AAGTAGAAAGGCGACTATCT+TGG | + | chr3.1:38178436-38178455 | MS.gene82706:CDS | 40.0% | |
| AATCATTACATGAGAGTGGG+AGG | + | chr3.1:38175602-38175621 | MS.gene82706:intron | 40.0% | |
| AATCCGGTACTATAGGAGTT+TGG | + | chr3.1:38177983-38178002 | MS.gene82706:intron | 40.0% | |
| ACACCAAACTCCTATAGTAC+CGG | - | chr3.1:38177989-38178008 | None:intergenic | 40.0% | |
| ACAGTGTTATCTATTGCGGA+TGG | - | chr3.1:38175567-38175586 | None:intergenic | 40.0% | |
| AGGAGAAATAAGTGCTACCT+GGG | - | chr3.1:38177219-38177238 | None:intergenic | 40.0% | |
| ATACTGAACCACTGTGGTAT+TGG | + | chr3.1:38178591-38178610 | MS.gene82706:intron | 40.0% | |
| ATATTGACCATGGCGAATTG+CGG | + | chr3.1:38175428-38175447 | MS.gene82706:intron | 40.0% | |
| CTAGACAGGAGTTCAAATTG+TGG | + | chr3.1:38176753-38176772 | MS.gene82706:intron | 40.0% | |
| GAAACTGTGATCTGAATGCA+GGG | - | chr3.1:38175920-38175939 | None:intergenic | 40.0% | |
| GATGGTTATGGTATAGACCT+AGG | + | chr3.1:38177402-38177421 | MS.gene82706:intron | 40.0% | |
| GCTCTTAAAAAGCAGGAAAG+TGG | - | chr3.1:38177288-38177307 | None:intergenic | 40.0% | |
| GGACTTGCAATGATTGATGA+TGG | + | chr3.1:38178626-38178645 | MS.gene82706:CDS | 40.0% | |
| GGCGCGATTGAATAATTTGA+AGG | + | chr3.1:38175720-38175739 | MS.gene82706:intron | 40.0% | |
| GTATAGACCTAGGGTATGTT+TGG | + | chr3.1:38177412-38177431 | MS.gene82706:intron | 40.0% | |
| TATCAAGTGCATCAATGGCA+CGG | - | chr3.1:38178470-38178489 | None:intergenic | 40.0% | |
| TATCCACATCATGCAATCAC+AGG | - | chr3.1:38177339-38177358 | None:intergenic | 40.0% | |
| TCACGAAAATCCGGTACTAT+AGG | + | chr3.1:38177976-38177995 | MS.gene82706:intron | 40.0% | |
| TGAAACTGTGATCTGAATGC+AGG | - | chr3.1:38175921-38175940 | None:intergenic | 40.0% | |
| TGAAATTCTTGAACTTGCCC+AGG | + | chr3.1:38177199-38177218 | MS.gene82706:CDS | 40.0% | |
| TGAATAACAGAAACGTGGCT+TGG | + | chr3.1:38176232-38176251 | MS.gene82706:intron | 40.0% | |
| TGACTGTCGATGAAGTAGAA+AGG | + | chr3.1:38178424-38178443 | MS.gene82706:CDS | 40.0% | |
| TGGCACCTCTAATCACAAAT+TGG | - | chr3.1:38175480-38175499 | None:intergenic | 40.0% | |
| TTACGAATGTCATTCTGCAC+CGG | - | chr3.1:38175894-38175913 | None:intergenic | 40.0% | |
| TTCAAGCTGAGAACGAAAAG+TGG | - | chr3.1:38175064-38175083 | None:intergenic | 40.0% | |
| TTCCTGTCAAAGACGAAATG+GGG | - | chr3.1:38178694-38178713 | None:intergenic | 40.0% | |
| ! | AGATTTTGCTCGCAAACACA+AGG | + | chr3.1:38175083-38175102 | MS.gene82706:CDS | 40.0% |
| ! | GGCCTCGAATAAAGGTTTTT+GGG | + | chr3.1:38175974-38175993 | MS.gene82706:CDS | 40.0% |
| ! | TAAAGTTGGAGTTGATCCCT+TGG | + | chr3.1:38175953-38175972 | MS.gene82706:CDS | 40.0% |
| ! | TCTTTTCATGCTTCGTGACA+AGG | - | chr3.1:38178293-38178312 | None:intergenic | 40.0% |
| ! | TGGCCTCGAATAAAGGTTTT+TGG | + | chr3.1:38175973-38175992 | MS.gene82706:CDS | 40.0% |
| !! | ATTGATGATGGCCACAAAGA+CGG | + | chr3.1:38178638-38178657 | MS.gene82706:CDS | 40.0% |
| !! | ATTTGTGATTAGAGGTGCCA+TGG | + | chr3.1:38175480-38175499 | MS.gene82706:intron | 40.0% |
| !! | GAGTTTGGTGTTAGGTATAG+TGG | + | chr3.1:38177998-38178017 | MS.gene82706:intron | 40.0% |
| !! | GTGGCATGGTTTAGTTTGAT+TGG | + | chr3.1:38178247-38178266 | MS.gene82706:intron | 40.0% |
| !! | TATTTCAGGTTCTTGGTAGC+GGG | + | chr3.1:38177105-38177124 | MS.gene82706:intron | 40.0% |
| !! | TTTGGAGATGGGTTTGGTTT+TGG | + | chr3.1:38175294-38175313 | MS.gene82706:intron | 40.0% |
| !!! | ACTTTTTCAACACCGACAGA+TGG | - | chr3.1:38178318-38178337 | None:intergenic | 40.0% |
| !!! | TGGCAACATTTTGGTTTCGA+CGG | + | chr3.1:38178018-38178037 | MS.gene82706:intron | 40.0% |
| !!! | TTGGAGATGGGTTTGGTTTT+GGG | + | chr3.1:38175295-38175314 | MS.gene82706:intron | 40.0% |
| AAGACGGAAAACGACGGTAT+TGG | + | chr3.1:38178654-38178673 | MS.gene82706:CDS | 45.0% | |
| AAGGCGACTATCTTGGACTT+CGG | + | chr3.1:38178443-38178462 | MS.gene82706:CDS | 45.0% | |
| ATGAGAAGGAGACCTGGAAT+TGG | + | chr3.1:38174943-38174962 | MS.gene82706:CDS | 45.0% | |
| ATGCCTGTGATTGCATGATG+TGG | + | chr3.1:38177333-38177352 | MS.gene82706:intron | 45.0% | |
| CACGAGATGTGTGCTAAAGT+TGG | + | chr3.1:38175939-38175958 | MS.gene82706:CDS | 45.0% | |
| CAGAGAAGAAAAAGTGACCG+TGG | + | chr3.1:38176847-38176866 | MS.gene82706:CDS | 45.0% | |
| CTCTCAAACAGTCTCACAAG+TGG | - | chr3.1:38177470-38177489 | None:intergenic | 45.0% | |
| CTTGGTTTACTTCAGGGTCA+AGG | + | chr3.1:38178396-38178415 | MS.gene82706:intron | 45.0% | |
| GGCCCAAAAACCTTTATTCG+AGG | - | chr3.1:38175979-38175998 | None:intergenic | 45.0% | |
| GGTTGATCAATCCACCATTG+CGG | - | chr3.1:38176801-38176820 | None:intergenic | 45.0% | |
| GTGTTATCTATTGCGGATGG+CGG | - | chr3.1:38175564-38175583 | None:intergenic | 45.0% | |
| GTTGATCAATCCACCATTGC+GGG | - | chr3.1:38176800-38176819 | None:intergenic | 45.0% | |
| GTTTGTAACCCTCCAATTCC+AGG | - | chr3.1:38174958-38174977 | None:intergenic | 45.0% | |
| TCATGGATACTGAACCACTG+TGG | + | chr3.1:38178585-38178604 | MS.gene82706:intron | 45.0% | |
| TCCTGTCAAAGACGAAATGG+GGG | - | chr3.1:38178693-38178712 | None:intergenic | 45.0% | |
| TCTCGTGGCTCTTAAAAAGC+AGG | - | chr3.1:38177295-38177314 | None:intergenic | 45.0% | |
| TCTTTATCCTGCATTCCTGC+TGG | + | chr3.1:38176545-38176564 | MS.gene82706:intron | 45.0% | |
| TGGTCTTTGTTCAGCTCAGT+TGG | - | chr3.1:38177176-38177195 | None:intergenic | 45.0% | |
| TTGATCAATCCACCATTGCG+GGG | - | chr3.1:38176799-38176818 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr3.1:38178111-38178130 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3.1:38178112-38178131 | None:intergenic | 45.0% |
| ! | CCACTAATGGTTGGTATCAC+CGG | + | chr3.1:38175872-38175891 | MS.gene82706:intron | 45.0% |
| ! | GGATTTTCGACTTTCTGCCT+TGG | + | chr3.1:38175537-38175556 | MS.gene82706:intron | 45.0% |
| ! | TGTTGGTGTTCACTGTTCAG+AGG | + | chr3.1:38178188-38178207 | MS.gene82706:intron | 45.0% |
| ! | TTATCACCAAGTTCTGGCAG+TGG | + | chr3.1:38176490-38176509 | MS.gene82706:intron | 45.0% |
| ! | TTTTGCTAAGACGAGCGACT+TGG | + | chr3.1:38176730-38176749 | MS.gene82706:intron | 45.0% |
| !! | AGGTTTTTGGGCCGAGTTAT+TGG | + | chr3.1:38175986-38176005 | MS.gene82706:CDS | 45.0% |
| !! | GGTTTTTGGGCCGAGTTATT+GGG | + | chr3.1:38175987-38176006 | MS.gene82706:CDS | 45.0% |
| !! | TGTAGCTTTGGAGATGGGTT+TGG | + | chr3.1:38175288-38175307 | MS.gene82706:intron | 45.0% |
| !!! | CACGGTCACTTTTTCTTCTC+TGG | - | chr3.1:38176849-38176868 | None:intergenic | 45.0% |
| !!! | CACTTTTTCTTCTCTGGCGA+AGG | - | chr3.1:38176843-38176862 | None:intergenic | 45.0% |
| !!! | CGTTTTAGGGCGGATAATAG+TGG | + | chr3.1:38175503-38175522 | MS.gene82706:intron | 45.0% |
| AACTGTACCAGCAGGAATGC+AGG | - | chr3.1:38176555-38176574 | None:intergenic | 50.0% | |
| ACAAACAGCTGCAGCAGCAA+GGG | + | chr3.1:38174972-38174991 | MS.gene82706:CDS | 50.0% | |
| ACGTCTACAACTGTACCAGC+AGG | - | chr3.1:38176563-38176582 | None:intergenic | 50.0% | |
| AGAAGGAGACCTGGAATTGG+AGG | + | chr3.1:38174946-38174965 | MS.gene82706:CDS | 50.0% | |
| AGGCGACTATCTTGGACTTC+GGG | + | chr3.1:38178444-38178463 | MS.gene82706:CDS | 50.0% | |
| CAACAAACTAGGGTCCTGCT+TGG | - | chr3.1:38177696-38177715 | None:intergenic | 50.0% | |
| CATCCTCGGAAACAACTCCA+CGG | - | chr3.1:38176867-38176886 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3.1:38178110-38178129 | MS.gene82706:intron | 50.0% | |
| CCATGCCACAGATGAAGCTT+CGG | - | chr3.1:38178236-38178255 | None:intergenic | 50.0% | |
| CCGGTGATACCAACCATTAG+TGG | - | chr3.1:38175875-38175894 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr3.1:38178107-38178126 | None:intergenic | 50.0% | |
| GAAGGAGACCTGGAATTGGA+GGG | + | chr3.1:38174947-38174966 | MS.gene82706:CDS | 50.0% | |
| GACGAAATGGGGGATACACA+CGG | - | chr3.1:38178683-38178702 | None:intergenic | 50.0% | |
| GATCCCTTGGCCTCGAATAA+AGG | + | chr3.1:38175966-38175985 | MS.gene82706:CDS | 50.0% | |
| GCCACAAAGACGGAAAACGA+CGG | + | chr3.1:38178648-38178667 | MS.gene82706:CDS | 50.0% | |
| GCGTGCTATCAGTAAGCTGA+AGG | + | chr3.1:38176894-38176913 | MS.gene82706:CDS | 50.0% | |
| GGAGTTGACAGAGTTCTTGC+AGG | - | chr3.1:38176822-38176841 | None:intergenic | 50.0% | |
| TACAAACAGCTGCAGCAGCA+AGG | + | chr3.1:38174971-38174990 | MS.gene82706:CDS | 50.0% | |
| TCAGCTCAGTTGGAACCGAA+CGG | - | chr3.1:38177166-38177185 | None:intergenic | 50.0% | |
| TCAGCTTACTGATAGCACGC+AGG | - | chr3.1:38176894-38176913 | None:intergenic | 50.0% | |
| TCCCCCATTTCGTCTTTGAC+AGG | + | chr3.1:38178689-38178708 | MS.gene82706:CDS | 50.0% | |
| TGCATGAGCCAATACCACAG+TGG | - | chr3.1:38178602-38178621 | None:intergenic | 50.0% | |
| TGGGCCGAGTTATTGGGAAT+TGG | + | chr3.1:38175993-38176012 | MS.gene82706:CDS | 50.0% | |
| TGTAACCGACCCCACTTAGT+GGG | + | chr3.1:38178099-38178118 | MS.gene82706:intron | 50.0% | |
| TTATCCGCCCTAAAACGCCA+TGG | - | chr3.1:38175500-38175519 | None:intergenic | 50.0% | |
| TTGTAACCGACCCCACTTAG+TGG | + | chr3.1:38178098-38178117 | MS.gene82706:intron | 50.0% | |
| ! | ATGCATTCTGGTTGACGCTG+TGG | + | chr3.1:38177058-38177077 | MS.gene82706:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3.1:38178113-38178132 | None:intergenic | 50.0% |
| !! | AAGCACCGAAGCTTCATCTG+TGG | + | chr3.1:38178228-38178247 | MS.gene82706:intron | 50.0% |
| !! | ACCGTCGTTTTCCGTCTTTG+TGG | - | chr3.1:38178652-38178671 | None:intergenic | 50.0% |
| !! | ACTGTGGTATTGGCTCATGC+AGG | + | chr3.1:38178601-38178620 | MS.gene82706:intron | 50.0% |
| !! | TGGTATTGGCTCATGCAGGA+GGG | + | chr3.1:38178605-38178624 | MS.gene82706:intron | 50.0% |
| !!! | AGAGGTGCCATGGCGTTTTA+GGG | + | chr3.1:38175490-38175509 | MS.gene82706:intron | 50.0% |
| !!! | TAGAGGTGCCATGGCGTTTT+AGG | + | chr3.1:38175489-38175508 | MS.gene82706:intron | 50.0% |
| AGCACGCAGGCAATCATCCT+CGG | - | chr3.1:38176881-38176900 | None:intergenic | 55.0% | |
| AGCAGGAAAGTGGAAGAGGC+AGG | - | chr3.1:38177278-38177297 | None:intergenic | 55.0% | |
| CCGAAGCTTCATCTGTGGCA+TGG | + | chr3.1:38178233-38178252 | MS.gene82706:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr3.1:38178105-38178124 | MS.gene82706:intron | 55.0% | |
| GTACTGCCACTGCCAGAACT+TGG | - | chr3.1:38176499-38176518 | None:intergenic | 55.0% | |
| TTGACCATGGCGAATTGCGG+TGG | + | chr3.1:38175431-38175450 | MS.gene82706:intron | 55.0% | |
| TTGGCTACTAGACCCCGCAA+TGG | + | chr3.1:38176784-38176803 | MS.gene82706:CDS | 55.0% | |
| ! | TGACCGTGGAGTTGTTTCCG+AGG | + | chr3.1:38176861-38176880 | MS.gene82706:CDS | 55.0% |
| !! | GTGGTATTGGCTCATGCAGG+AGG | + | chr3.1:38178604-38178623 | MS.gene82706:intron | 55.0% |
| ACCATGGCGAATTGCGGTGG+TGG | + | chr3.1:38175434-38175453 | MS.gene82706:intron | 60.0% | |
| GCTACTAGACCCCGCAATGG+TGG | + | chr3.1:38176787-38176806 | MS.gene82706:CDS | 60.0% | |
| TCCACCACCGCAATTCGCCA+TGG | - | chr3.1:38175438-38175457 | None:intergenic | 60.0% | |
| ! | GACGAGCGACTTGGCTAGAC+AGG | + | chr3.1:38176739-38176758 | MS.gene82706:intron | 60.0% |
| !! | CTATTGCGGATGGCGGACCA+AGG | - | chr3.1:38175557-38175576 | None:intergenic | 60.0% |
| !!! | GGTGCCATGGCGTTTTAGGG+CGG | + | chr3.1:38175493-38175512 | MS.gene82706:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 38174943 | 38178727 | 38174943 | ID=MS.gene82706 |
| chr3.1 | mRNA | 38174943 | 38178727 | 38174943 | ID=MS.gene82706.t1;Parent=MS.gene82706 |
| chr3.1 | exon | 38174943 | 38175104 | 38174943 | ID=MS.gene82706.t1.exon1;Parent=MS.gene82706.t1 |
| chr3.1 | CDS | 38174943 | 38175104 | 38174943 | ID=cds.MS.gene82706.t1;Parent=MS.gene82706.t1 |
| chr3.1 | exon | 38175900 | 38176035 | 38175900 | ID=MS.gene82706.t1.exon2;Parent=MS.gene82706.t1 |
| chr3.1 | CDS | 38175900 | 38176035 | 38175900 | ID=cds.MS.gene82706.t1;Parent=MS.gene82706.t1 |
| chr3.1 | exon | 38176761 | 38176915 | 38176761 | ID=MS.gene82706.t1.exon3;Parent=MS.gene82706.t1 |
| chr3.1 | CDS | 38176761 | 38176915 | 38176761 | ID=cds.MS.gene82706.t1;Parent=MS.gene82706.t1 |
| chr3.1 | exon | 38177113 | 38177220 | 38177113 | ID=MS.gene82706.t1.exon4;Parent=MS.gene82706.t1 |
| chr3.1 | CDS | 38177113 | 38177220 | 38177113 | ID=cds.MS.gene82706.t1;Parent=MS.gene82706.t1 |
| chr3.1 | exon | 38178411 | 38178500 | 38178411 | ID=MS.gene82706.t1.exon5;Parent=MS.gene82706.t1 |
| chr3.1 | CDS | 38178411 | 38178500 | 38178411 | ID=cds.MS.gene82706.t1;Parent=MS.gene82706.t1 |
| chr3.1 | exon | 38178623 | 38178727 | 38178623 | ID=MS.gene82706.t1.exon6;Parent=MS.gene82706.t1 |
| chr3.1 | CDS | 38178623 | 38178727 | 38178623 | ID=cds.MS.gene82706.t1;Parent=MS.gene82706.t1 |
| Gene Sequence |
| Protein sequence |
