Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83021.t1 | BBG97541.1 | 79.4 | 354 | 67 | 1 | 1 | 348 | 546 | 899 | 5.40E-140 | 507.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83021.t1 | P10978 | 29.8 | 346 | 220 | 7 | 7 | 336 | 5 | 343 | 2.8e-36 | 154.5 |
| MS.gene83021.t1 | P10978 | 69.5 | 82 | 25 | 0 | 339 | 420 | 1060 | 1141 | 3.8e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83021.t1 | A0A4Y1RCM7 | 79.4 | 354 | 67 | 1 | 1 | 348 | 1 | 354 | 3.9e-140 | 507.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene83021 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene83021 | 0.820955 | 5.22E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene83021 | 0.817771 | 2.77E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene83021 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene83021 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene056973 | MS.gene83021 | 0.805465 | 1.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83021.t1 | MTR_2g039140 | 40.761 | 184 | 76 | 2 | 1 | 183 | 120 | 271 | 7.43e-32 | 122 |
| MS.gene83021.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 7.26e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83021.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 2.86e-30 | 113 |
Find 100 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAACTGAACTTAAT+TGG | 0.095422 | 1.4:+17700995 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.4:+17700485 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 1.4:+17699363 | None:intergenic |
| TCTATCGAGTGTTGGAATTA+TGG | 0.229387 | 1.4:-17700679 | MS.gene83021:CDS |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.4:+17701255 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.4:+17700622 | None:intergenic |
| CAACGGCGTGCTAACCGTTT+TGG | 0.273605 | 1.4:+17699406 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.4:-17700563 | MS.gene83021:CDS |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 1.4:-17699314 | MS.gene83021:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.4:+17700486 | None:intergenic |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 1.4:+17699311 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.4:+17700623 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.4:-17701341 | MS.gene83021:CDS |
| GATACCAACTGAACTTAATT+GGG | 0.381678 | 1.4:+17700996 | None:intergenic |
| CTGAGAACTACGATGATATC+TGG | 0.382027 | 1.4:+17700711 | None:intergenic |
| ATAGTAGCACTCCAACTATC+TGG | 0.401775 | 1.4:+17700928 | None:intergenic |
| ACTACGATGATATCTGGATT+TGG | 0.405354 | 1.4:+17700717 | None:intergenic |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.4:+17700456 | None:intergenic |
| AGAAATTCAACCAGAGGAAA+TGG | 0.417568 | 1.4:-17700766 | MS.gene83021:CDS |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.4:-17700431 | MS.gene83021:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 1.4:+17699319 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.4:-17700939 | MS.gene83021:CDS |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 1.4:+17699260 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 1.4:+17699186 | None:intergenic |
| ATGCAGTGGGAGTTGTTAGC+AGG | 0.430599 | 1.4:-17699247 | MS.gene83021:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.4:-17700866 | MS.gene83021:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.4:-17700425 | MS.gene83021:CDS |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 1.4:+17699364 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.4:-17700832 | MS.gene83021:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.4:-17700592 | MS.gene83021:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.4:-17700394 | MS.gene83021:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.4:-17700542 | MS.gene83021:CDS |
| ATATCTGGATTTGGATCGTC+TGG | 0.450692 | 1.4:+17700726 | None:intergenic |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.4:-17701348 | MS.gene83021:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 1.4:+17701102 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.4:-17700393 | MS.gene83021:CDS |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.4:+17700434 | None:intergenic |
| TTTACCACGTCCATTTCCTC+TGG | 0.487326 | 1.4:+17700756 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.4:-17700451 | MS.gene83021:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.4:-17700424 | MS.gene83021:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.4:-17700543 | MS.gene83021:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.4:-17700466 | MS.gene83021:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.4:-17701074 | MS.gene83021:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.4:-17700529 | MS.gene83021:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.4:-17699420 | MS.gene83021:CDS |
| TGTTGGAATTATGGAAAGAC+AGG | 0.526890 | 1.4:-17700670 | MS.gene83021:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 1.4:+17699369 | None:intergenic |
| CACAGCTGTGAGTAGCTCCT+CGG | 0.532303 | 1.4:-17700905 | MS.gene83021:CDS |
| ACAGCTGTGAGTAGCTCCTC+GGG | 0.536921 | 1.4:-17700904 | MS.gene83021:CDS |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.4:-17701262 | MS.gene83021:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.4:+17700579 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.4:+17700457 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.4:-17700833 | MS.gene83021:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.4:-17701092 | MS.gene83021:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.4:-17700418 | MS.gene83021:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 1.4:-17699261 | MS.gene83021:CDS |
| ACTCAAAATCTATCGAGTGT+TGG | 0.554206 | 1.4:-17700687 | MS.gene83021:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 1.4:-17699260 | MS.gene83021:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.4:-17701148 | MS.gene83021:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.560980 | 1.4:+17700932 | None:intergenic |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.4:-17701063 | MS.gene83021:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.562789 | 1.4:+17700933 | None:intergenic |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.4:-17701360 | MS.gene83021:CDS |
| CTCTGTATGCAATACTGAAG+AGG | 0.567853 | 1.4:+17700798 | None:intergenic |
| ACAACCCAATTAAGTTCAGT+TGG | 0.568124 | 1.4:-17701000 | MS.gene83021:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.4:-17700586 | MS.gene83021:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 1.4:-17699272 | MS.gene83021:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 1.4:+17699249 | None:intergenic |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.4:-17700475 | MS.gene83021:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.4:-17700554 | MS.gene83021:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.4:-17701052 | MS.gene83021:CDS |
| AAATGGACGTGGTAAATCAA+AGG | 0.596335 | 1.4:-17700749 | MS.gene83021:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.4:-17700843 | MS.gene83021:CDS |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.4:-17701089 | MS.gene83021:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 1.4:-17699363 | MS.gene83021:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.4:-17701225 | MS.gene83021:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 1.4:-17699294 | MS.gene83021:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.4:-17700589 | MS.gene83021:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.4:-17701251 | MS.gene83021:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.4:-17701355 | MS.gene83021:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.4:+17701226 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.4:-17701382 | MS.gene83021:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.4:+17700449 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.4:-17701387 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.4:+17700827 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.4:+17701146 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.4:-17700614 | MS.gene83021:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.4:-17701159 | MS.gene83021:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.4:+17700576 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.639552 | 1.4:-17700980 | MS.gene83021:CDS |
| CAAAACGGTTAGCACGCCGT+TGG | 0.641075 | 1.4:-17699405 | MS.gene83021:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 1.4:-17699360 | MS.gene83021:CDS |
| AGAGGAAGAAATTCAACCAG+AGG | 0.643795 | 1.4:-17700772 | MS.gene83021:CDS |
| TCAACCAGAGGAAATGGACG+TGG | 0.665050 | 1.4:-17700760 | MS.gene83021:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.4:-17700626 | MS.gene83021:CDS |
| GTATTGCATACAGAGTCAAG+AGG | 0.682691 | 1.4:-17700790 | MS.gene83021:CDS |
| AGGCGAAAATGACTTGCCAA+CGG | 0.689012 | 1.4:+17699389 | None:intergenic |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.4:+17700458 | None:intergenic |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 1.4:-17699283 | MS.gene83021:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.4:+17701143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.4:17700095-17700114 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.4:17700094-17700113 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.4:17700184-17700203 | MS.gene83021:intron | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.4:17700528-17700547 | MS.gene83021:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.4:17699485-17699504 | MS.gene83021:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.4:17700415-17700434 | MS.gene83021:CDS | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.4:17700183-17700202 | MS.gene83021:intron | 25.0% |
| AGTTTGACATGAAGGATTTA+GGG | - | chr1.4:17701033-17701052 | MS.gene83021:CDS | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.4:17699488-17699507 | MS.gene83021:intron | 30.0% | |
| ATCACGAAAGATAAGCAAAA+AGG | - | chr1.4:17701083-17701102 | MS.gene83021:CDS | 30.0% | |
| GATACCAACTGAACTTAATT+GGG | + | chr1.4:17699584-17699603 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.4:17700312-17700331 | MS.gene83021:intron | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.4:17699217-17699236 | MS.gene83021:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.4:17700146-17700165 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.4:17700146-17700165 | MS.gene83021:intron | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.4:17700102-17700121 | MS.gene83021:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.4:17700398-17700417 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.4:17701143-17701162 | MS.gene83021:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr1.4:17699478-17699497 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.4:17701142-17701161 | MS.gene83021:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.4:17699315-17699334 | MS.gene83021:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.4:17699828-17699847 | MS.gene83021:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.4:17700126-17700145 | MS.gene83021:intron | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.4:17700490-17700509 | MS.gene83021:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.4:17700429-17700448 | MS.gene83021:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.4:17700429-17700448 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.4:17699222-17699241 | MS.gene83021:CDS | 35.0% | |
| ACAACCCAATTAAGTTCAGT+TGG | - | chr1.4:17699577-17699596 | MS.gene83021:intron | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.4:17700249-17700268 | MS.gene83021:intron | 35.0% | |
| ACTACGATGATATCTGGATT+TGG | + | chr1.4:17699863-17699882 | None:intergenic | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.4:17699890-17699909 | MS.gene83021:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr1.4:17699811-17699830 | MS.gene83021:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.4:17700561-17700580 | MS.gene83021:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.4:17700748-17700767 | MS.gene83021:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.4:17700911-17700930 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.4:17700471-17700490 | MS.gene83021:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.4:17700446-17700465 | MS.gene83021:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.4:17701263-17701282 | MS.gene83021:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.4:17700504-17700523 | None:intergenic | 35.0% | |
| CAGAAGATGTGAAGAGAATA+TGG | - | chr1.4:17700776-17700795 | MS.gene83021:CDS | 35.0% | |
| CGATACCAACTGAACTTAAT+TGG | + | chr1.4:17699585-17699604 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.4:17700153-17700172 | MS.gene83021:intron | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.4:17699929-17699948 | MS.gene83021:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.4:17701032-17701051 | MS.gene83021:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.4:17700124-17700143 | None:intergenic | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.4:17701025-17701044 | MS.gene83021:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.4:17700123-17700142 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.4:17700152-17700171 | MS.gene83021:intron | 35.0% | |
| TGTTGGAATTATGGAAAGAC+AGG | - | chr1.4:17699907-17699926 | MS.gene83021:intron | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.4:17700447-17700466 | MS.gene83021:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.4:17700131-17700150 | None:intergenic | 35.0% | |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.4:17700243-17700262 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.4:17700244-17700263 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.4:17700194-17700213 | MS.gene83021:intron | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.4:17700014-17700033 | MS.gene83021:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr1.4:17700963-17700982 | MS.gene83021:CDS | 35.0% |
| !! | TCTATCGAGTGTTGGAATTA+TGG | - | chr1.4:17699898-17699917 | MS.gene83021:intron | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.4:17700193-17700212 | MS.gene83021:intron | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.4:17700122-17700141 | None:intergenic | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr1.4:17700308-17700327 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.4:17700843-17700862 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.4:17699326-17699345 | MS.gene83021:CDS | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.4:17700111-17700130 | MS.gene83021:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr1.4:17699805-17699824 | MS.gene83021:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.4:17700804-17700823 | MS.gene83021:CDS | 40.0% | |
| ATAGTAGCACTCCAACTATC+TGG | + | chr1.4:17699652-17699671 | None:intergenic | 40.0% | |
| ATATCTGGATTTGGATCGTC+TGG | + | chr1.4:17699854-17699873 | None:intergenic | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.4:17699711-17699730 | MS.gene83021:intron | 40.0% | |
| CTCTGTATGCAATACTGAAG+AGG | + | chr1.4:17699782-17699801 | None:intergenic | 40.0% | |
| CTGAGAACTACGATGATATC+TGG | + | chr1.4:17699869-17699888 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.4:17701269-17701288 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.4:17700907-17700926 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr1.4:17701235-17701254 | MS.gene83021:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.4:17700701-17700720 | MS.gene83021:CDS | 40.0% | |
| GGTACTCTTTACAAGACAAC+TGG | - | chr1.4:17700366-17700385 | MS.gene83021:intron | 40.0% | |
| GTATTGCATACAGAGTCAAG+AGG | - | chr1.4:17699787-17699806 | MS.gene83021:intron | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.4:17700860-17700879 | MS.gene83021:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.4:17700448-17700467 | MS.gene83021:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.4:17700455-17700474 | MS.gene83021:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.4:17700739-17700758 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.4:17701261-17701280 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.4:17701283-17701302 | MS.gene83021:CDS | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.4:17700248-17700267 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.4:17700762-17700781 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.4:17700023-17700042 | MS.gene83021:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.4:17700455-17700474 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.4:17699597-17699616 | MS.gene83021:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.4:17699692-17699711 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.4:17699325-17699344 | None:intergenic | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.4:17699307-17699326 | None:intergenic | 40.0% |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.4:17699437-17699456 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.4:17700578-17700597 | MS.gene83021:CDS | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.4:17699647-17699666 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.4:17699354-17699373 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.4:17701214-17701233 | MS.gene83021:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.4:17699352-17699371 | MS.gene83021:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.4:17700864-17700883 | MS.gene83021:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.4:17699963-17699982 | MS.gene83021:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.4:17701211-17701230 | None:intergenic | 45.0% | |
| GGGCAGGCAAAGAAAATTCT+TGG | - | chr1.4:17701053-17701072 | MS.gene83021:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.4:17700784-17700803 | MS.gene83021:CDS | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.4:17699648-17699667 | None:intergenic | 45.0% | |
| TCGAACCTTTCGTCAAACCA+CGG | + | chr1.4:17700608-17700627 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.4:17699957-17699976 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.4:17700159-17700178 | MS.gene83021:intron | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.4:17699638-17699657 | MS.gene83021:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.4:17699958-17699977 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.4:17699734-17699753 | MS.gene83021:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr1.4:17699824-17699843 | None:intergenic | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.4:17699514-17699533 | MS.gene83021:intron | 45.0% | |
| ! | AGGCGAAAATGACTTGCCAA+CGG | + | chr1.4:17701191-17701210 | None:intergenic | 45.0% |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.4:17701216-17701235 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.4:17701230-17701249 | None:intergenic | 45.0% |
| ! | TGACATGAAGGATTTAGGGC+AGG | - | chr1.4:17701037-17701056 | MS.gene83021:CDS | 45.0% |
| AAACCACGGCTCTCCTTCTT+TGG | + | chr1.4:17700594-17700613 | None:intergenic | 50.0% | |
| AACCACGGCTCTCCTTCTTT+GGG | + | chr1.4:17700593-17700612 | None:intergenic | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.4:17699229-17699248 | MS.gene83021:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.4:17700893-17700912 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.4:17701217-17701236 | MS.gene83021:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.4:17700345-17700364 | MS.gene83021:intron | 50.0% | |
| ATGCAGTGGGAGTTGTTAGC+AGG | - | chr1.4:17701330-17701349 | MS.gene83021:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.4:17700823-17700842 | MS.gene83021:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.4:17699753-17699772 | None:intergenic | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.4:17701157-17701176 | MS.gene83021:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr1.4:17700298-17700317 | MS.gene83021:intron | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.4:17700257-17700276 | MS.gene83021:intron | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.4:17700048-17700067 | MS.gene83021:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.4:17700723-17700742 | MS.gene83021:CDS | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.4:17699418-17699437 | MS.gene83021:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.4:17699951-17699970 | MS.gene83021:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.4:17700035-17700054 | MS.gene83021:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr1.4:17700288-17700307 | MS.gene83021:intron | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr1.4:17700609-17700628 | MS.gene83021:CDS | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr1.4:17699817-17699836 | MS.gene83021:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.4:17700637-17700656 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.4:17700829-17700848 | MS.gene83021:CDS | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.4:17699503-17699522 | MS.gene83021:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.4:17701331-17701350 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.4:17700034-17700053 | MS.gene83021:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.4:17701294-17701313 | MS.gene83021:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.4:17700677-17700696 | MS.gene83021:CDS | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.4:17699988-17700007 | MS.gene83021:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.4:17700830-17700849 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.4:17701217-17701236 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.4:17699985-17700004 | MS.gene83021:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.4:17699429-17699448 | MS.gene83021:CDS | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.4:17699236-17699255 | MS.gene83021:CDS | 50.0% |
| ACAGCTGTGAGTAGCTCCTC+GGG | - | chr1.4:17699673-17699692 | MS.gene83021:intron | 55.0% | |
| ACCACGGCTCTCCTTCTTTG+GGG | + | chr1.4:17700592-17700611 | None:intergenic | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.4:17699744-17699763 | MS.gene83021:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.4:17699434-17699453 | None:intergenic | 55.0% | |
| CAAAACGGTTAGCACGCCGT+TGG | - | chr1.4:17701172-17701191 | MS.gene83021:CDS | 55.0% | |
| CACAGCTGTGAGTAGCTCCT+CGG | - | chr1.4:17699672-17699691 | MS.gene83021:intron | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.4:17701317-17701336 | MS.gene83021:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.4:17700649-17700668 | MS.gene83021:CDS | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.4:17700652-17700671 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.4:17700652-17700671 | MS.gene83021:CDS | 55.0% | |
| GAGAGCCGTGGTTTGACGAA+AGG | - | chr1.4:17700600-17700619 | MS.gene83021:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.4:17699745-17699764 | MS.gene83021:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.4:17700631-17700650 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.4:17700333-17700352 | MS.gene83021:intron | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.4:17701305-17701324 | MS.gene83021:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.4:17700275-17700294 | None:intergenic | 55.0% | |
| ! | CAACGGCGTGCTAACCGTTT+TGG | + | chr1.4:17701174-17701193 | None:intergenic | 55.0% |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.4:17699525-17699544 | MS.gene83021:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.4:17700268-17700287 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.4:17700660-17700679 | None:intergenic | 60.0% | |
| ACCCCAAAGAAGGAGAGCCG+TGG | - | chr1.4:17700588-17700607 | MS.gene83021:CDS | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.4:17700684-17700703 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.4:17700004-17700023 | None:intergenic | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.4:17701320-17701339 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.4:17700655-17700674 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.4:17701316-17701335 | MS.gene83021:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.4:17700267-17700286 | MS.gene83021:intron | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.4:17699991-17700010 | MS.gene83021:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.4:17700680-17700699 | MS.gene83021:CDS | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.4:17700001-17700020 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 17699196 | 17701403 | 17699196 | ID=MS.gene83021 |
| chr1.4 | mRNA | 17699196 | 17701403 | 17699196 | ID=MS.gene83021.t1;Parent=MS.gene83021 |
| chr1.4 | exon | 17700390 | 17701403 | 17700390 | ID=MS.gene83021.t1.exon1;Parent=MS.gene83021.t1 |
| chr1.4 | CDS | 17700390 | 17701403 | 17700390 | ID=cds.MS.gene83021.t1;Parent=MS.gene83021.t1 |
| chr1.4 | exon | 17699196 | 17699483 | 17699196 | ID=MS.gene83021.t1.exon2;Parent=MS.gene83021.t1 |
| chr1.4 | CDS | 17699196 | 17699483 | 17699196 | ID=cds.MS.gene83021.t1;Parent=MS.gene83021.t1 |
| Gene Sequence |
| Protein sequence |
