Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83025.t1 | XP_013466616.1 | 96.1 | 311 | 12 | 0 | 15 | 325 | 1 | 311 | 1.60E-136 | 495.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83025.t1 | Q9LFD5 | 42.9 | 233 | 126 | 3 | 43 | 273 | 3 | 230 | 8.2e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83025.t1 | A0A072VFR7 | 96.1 | 311 | 12 | 0 | 15 | 325 | 1 | 311 | 1.1e-136 | 495.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83025 | MS.gene92820 | PPI |
| MS.gene043248 | MS.gene83025 | PPI |
| MS.gene83025 | MS.gene79606 | PPI |
| MS.gene021689 | MS.gene83025 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83025.t1 | MTR_1g032860 | 96.141 | 311 | 12 | 0 | 15 | 325 | 1 | 311 | 0.0 | 604 |
| MS.gene83025.t1 | MTR_8g105910 | 67.541 | 305 | 97 | 2 | 19 | 321 | 5 | 309 | 1.65e-143 | 407 |
| MS.gene83025.t1 | MTR_8g066460 | 55.985 | 259 | 102 | 3 | 44 | 297 | 2 | 253 | 9.93e-95 | 282 |
| MS.gene83025.t1 | MTR_8g066460 | 55.985 | 259 | 102 | 3 | 44 | 297 | 18 | 269 | 2.02e-94 | 282 |
| MS.gene83025.t1 | MTR_5g029640 | 56.757 | 259 | 100 | 3 | 44 | 297 | 2 | 253 | 1.56e-92 | 283 |
| MS.gene83025.t1 | MTR_5g029640 | 55.975 | 159 | 63 | 1 | 144 | 302 | 279 | 430 | 3.84e-49 | 171 |
| MS.gene83025.t1 | MTR_7g086080 | 41.365 | 249 | 127 | 2 | 46 | 275 | 4 | 252 | 1.87e-60 | 194 |
| MS.gene83025.t1 | MTR_5g039130 | 35.391 | 243 | 133 | 3 | 42 | 264 | 4 | 242 | 8.37e-42 | 145 |
| MS.gene83025.t1 | MTR_7g010100 | 34.661 | 251 | 123 | 5 | 47 | 264 | 7 | 249 | 6.51e-34 | 125 |
| MS.gene83025.t1 | MTR_5g038107 | 59.016 | 61 | 25 | 0 | 44 | 104 | 2 | 62 | 3.68e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83025.t1 | AT1G67950 | 54.212 | 273 | 102 | 3 | 42 | 312 | 25 | 276 | 5.38e-94 | 280 |
| MS.gene83025.t1 | AT4G17720 | 56.981 | 265 | 96 | 4 | 47 | 302 | 5 | 260 | 5.69e-94 | 281 |
| MS.gene83025.t1 | AT1G67950 | 54.412 | 272 | 102 | 3 | 42 | 312 | 25 | 275 | 1.36e-93 | 280 |
| MS.gene83025.t1 | AT1G67950 | 54.412 | 272 | 102 | 3 | 42 | 312 | 26 | 276 | 1.48e-93 | 280 |
| MS.gene83025.t1 | AT5G46870 | 57.384 | 237 | 90 | 1 | 47 | 272 | 5 | 241 | 7.53e-89 | 268 |
| MS.gene83025.t1 | AT5G46870 | 57.384 | 237 | 90 | 1 | 47 | 272 | 5 | 241 | 7.53e-89 | 268 |
| MS.gene83025.t1 | AT5G16840 | 53.846 | 234 | 100 | 4 | 43 | 273 | 3 | 231 | 7.70e-77 | 236 |
| MS.gene83025.t1 | AT5G16840 | 53.846 | 234 | 99 | 4 | 43 | 273 | 3 | 230 | 5.04e-76 | 234 |
| MS.gene83025.t1 | AT5G16840 | 53.879 | 232 | 98 | 4 | 45 | 273 | 3 | 228 | 1.54e-75 | 233 |
| MS.gene83025.t1 | AT1G67950 | 51.899 | 237 | 92 | 3 | 77 | 312 | 1 | 216 | 6.26e-72 | 222 |
| MS.gene83025.t1 | AT5G32450 | 42.276 | 246 | 122 | 3 | 46 | 271 | 5 | 250 | 2.25e-61 | 197 |
| MS.gene83025.t1 | AT1G14340 | 36.596 | 235 | 129 | 2 | 48 | 266 | 9 | 239 | 2.25e-40 | 142 |
| MS.gene83025.t1 | AT3G01210 | 31.330 | 233 | 125 | 5 | 49 | 254 | 9 | 233 | 4.90e-27 | 107 |
| MS.gene83025.t1 | AT3G01210 | 31.330 | 233 | 125 | 5 | 49 | 254 | 9 | 233 | 4.90e-27 | 107 |
Find 63 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGCTTATGTTACCTTTA+AGG | 0.148013 | 1.4:-17583026 | MS.gene83025:CDS |
| GCTTCTATTGATAATAAAAT+TGG | 0.199716 | 1.4:-17581891 | MS.gene83025:CDS |
| GGACTTGAGGGAAGTGCTTC+AGG | 0.208060 | 1.4:+17582791 | None:intergenic |
| TGCTCCCTGTGAATCCTTAA+AGG | 0.229047 | 1.4:+17583012 | None:intergenic |
| GAAACATGAACGGTCCAATT+TGG | 0.261534 | 1.4:+17583808 | None:intergenic |
| GCTCCACGGCTACACCAAAT+TGG | 0.295503 | 1.4:-17583822 | MS.gene83025:CDS |
| TTAATATAGGGTTCTAAGAT+AGG | 0.315670 | 1.4:-17582860 | MS.gene83025:intron |
| ATGGCTTCTGCTCTTTGATC+AGG | 0.378105 | 1.4:+17583850 | None:intergenic |
| AACAATTCTTACGTCTTAAC+CGG | 0.385999 | 1.4:-17581723 | MS.gene83025:CDS |
| AACTTTGAGGACTCTTTAAA+CGG | 0.410295 | 1.4:-17581546 | MS.gene83025:CDS |
| ACGTCTTAACCGGAGCTTCA+TGG | 0.420415 | 1.4:-17581713 | MS.gene83025:CDS |
| GACTTGAGGGAAGTGCTTCA+GGG | 0.436600 | 1.4:+17582792 | None:intergenic |
| GAATTCTTCAATGTCTTGCT+TGG | 0.438046 | 1.4:+17583207 | None:intergenic |
| GAGCAAAAGGCAAGTAGTGC+TGG | 0.446686 | 1.4:-17581759 | MS.gene83025:CDS |
| TTGGTACTTACTGGACTTGA+GGG | 0.448945 | 1.4:+17582779 | None:intergenic |
| ATCATTTACAGTGAAAGAAA+AGG | 0.454679 | 1.4:-17581594 | MS.gene83025:CDS |
| ATTTGGTGTAGCCGTGGAGC+AGG | 0.463764 | 1.4:+17583825 | None:intergenic |
| CAATTGAAGACGTTCATCAA+TGG | 0.466249 | 1.4:+17581938 | None:intergenic |
| TCTTAACTGCATCAGCACTT+TGG | 0.473425 | 1.4:+17582036 | None:intergenic |
| TTAAGTGATAAACTAAGTAT+TGG | 0.480617 | 1.4:-17581867 | MS.gene83025:CDS |
| TGTTACCTTTAAGGATTCAC+AGG | 0.482190 | 1.4:-17583017 | MS.gene83025:CDS |
| AACTGCGGAAGAAGCATTAG+AGG | 0.483050 | 1.4:+17581914 | None:intergenic |
| CTTTCCTAAAATGAAACCCT+TGG | 0.484629 | 1.4:+17581983 | None:intergenic |
| ATATGCTCAGATGAACTTTG+AGG | 0.486324 | 1.4:-17581559 | MS.gene83025:CDS |
| CACAACCATTGTCAATGAAA+AGG | 0.490292 | 1.4:-17581844 | MS.gene83025:CDS |
| GAACTAACAGGAACTACTGC+AGG | 0.495119 | 1.4:+17581519 | None:intergenic |
| TCCGAAAATGACAGTAAAGC+TGG | 0.503764 | 1.4:-17581498 | MS.gene83025:CDS |
| TGCGTTTAGCGTTGTTGCAA+AGG | 0.508406 | 1.4:-17581682 | MS.gene83025:CDS |
| GGAAGTTGGTACTGCTCCAC+AGG | 0.510179 | 1.4:+17582815 | None:intergenic |
| TATTGCTGTTGCTGAGCAAA+AGG | 0.512370 | 1.4:-17581772 | MS.gene83025:CDS |
| AGAGACAGCAGTTCTCTTGA+CGG | 0.514584 | 1.4:-17582990 | MS.gene83025:intron |
| AATGAAACCCTTGGCAAGCA+TGG | 0.519935 | 1.4:+17581992 | None:intergenic |
| AGCTTGTTCAACCTTCTCCA+TGG | 0.525835 | 1.4:+17581635 | None:intergenic |
| CTTCTGCTCTTTGATCAGGA+TGG | 0.537336 | 1.4:+17583854 | None:intergenic |
| ACTCGACAGCCATGAAGCTC+CGG | 0.541588 | 1.4:+17581704 | None:intergenic |
| TCATTTACAGTGAAAGAAAA+GGG | 0.548222 | 1.4:-17581593 | MS.gene83025:CDS |
| TTTGGTACTTACTGGACTTG+AGG | 0.548422 | 1.4:+17582778 | None:intergenic |
| CGTTGTTGCAAAGGCAGCTG+AGG | 0.550072 | 1.4:-17581673 | MS.gene83025:CDS |
| TGTAGCCGTGGAGCAGGGAA+TGG | 0.550995 | 1.4:+17583831 | None:intergenic |
| TTCAATATATTGAGATGCAA+AGG | 0.567772 | 1.4:-17583165 | MS.gene83025:intron |
| AATAAGTACCATGCTTGCCA+AGG | 0.569753 | 1.4:-17582000 | MS.gene83025:CDS |
| ACTTGAGGGAAGTGCTTCAG+GGG | 0.569844 | 1.4:+17582793 | None:intergenic |
| AGGTGAAAGAGATGGATGAA+AGG | 0.582201 | 1.4:-17581824 | MS.gene83025:CDS |
| GAAGGTTGAACAAGCTGAGG+TGG | 0.587721 | 1.4:-17581628 | MS.gene83025:CDS |
| CAGCACGATGACCATGGAGA+AGG | 0.588901 | 1.4:-17581646 | MS.gene83025:CDS |
| GGATGTCAGCACGATGACCA+TGG | 0.589946 | 1.4:-17581652 | MS.gene83025:CDS |
| CAATGAAAAGGTGAAAGAGA+TGG | 0.594437 | 1.4:-17581832 | MS.gene83025:CDS |
| ATAAGTACCATGCTTGCCAA+GGG | 0.605633 | 1.4:-17581999 | MS.gene83025:CDS |
| CAGGTGAGATGGTGACATAT+AGG | 0.608640 | 1.4:+17582834 | None:intergenic |
| AAGTGCTGATGCAGTTAAGA+CGG | 0.610368 | 1.4:-17582033 | MS.gene83025:CDS |
| GTACTGCTCCACAGGTGAGA+TGG | 0.613387 | 1.4:+17582823 | None:intergenic |
| TTTGGTGTAGCCGTGGAGCA+GGG | 0.615842 | 1.4:+17583826 | None:intergenic |
| GGTCCAATTTGGTGTAGCCG+TGG | 0.621466 | 1.4:+17583819 | None:intergenic |
| GTAAGAATTGTTCATGATAG+CGG | 0.622330 | 1.4:+17581734 | None:intergenic |
| GGAGAAGGTTGAACAAGCTG+AGG | 0.639161 | 1.4:-17581631 | MS.gene83025:CDS |
| GTTACCTTTAAGGATTCACA+GGG | 0.642161 | 1.4:-17583016 | MS.gene83025:CDS |
| ACTCACATTTGAAACATGAA+CGG | 0.647372 | 1.4:+17583798 | None:intergenic |
| ATTATCAATAGAAGCAACTG+CGG | 0.652964 | 1.4:+17581899 | None:intergenic |
| ATATGTCACCATCTCACCTG+TGG | 0.654688 | 1.4:-17582831 | MS.gene83025:CDS |
| AACTAACAGGAACTACTGCA+GGG | 0.663390 | 1.4:+17581520 | None:intergenic |
| CTTGAGGGAAGTGCTTCAGG+GGG | 0.674891 | 1.4:+17582794 | None:intergenic |
| AGAAGCCATTCCCTGCTCCA+CGG | 0.679364 | 1.4:-17583836 | MS.gene83025:CDS |
| TTTGAGGACTCTTTAAACGG+CGG | 0.688922 | 1.4:-17581543 | MS.gene83025:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCAATTAATAACTAGA+TGG | - | chr1.4:17584165-17584184 | MS.gene83025:intron | 15.0% |
| !! | ATTTATAAAGATAAGTACAT+TGG | + | chr1.4:17583320-17583339 | None:intergenic | 15.0% |
| !!! | AAGTTTGATTTTTATTCAAT+AGG | - | chr1.4:17582175-17582194 | MS.gene83025:intron | 15.0% |
| !!! | ATTCTTCGATTTTTAATATA+GGG | - | chr1.4:17583576-17583595 | MS.gene83025:intron | 15.0% |
| !!! | TAATGGATATTTTGTTATTT+CGG | - | chr1.4:17581642-17581661 | MS.gene83025:CDS | 15.0% |
| !!! | TATTCTTCGATTTTTAATAT+AGG | - | chr1.4:17583575-17583594 | MS.gene83025:intron | 15.0% |
| !! | AATATATTGTAAACTTTGAC+CGG | - | chr1.4:17584223-17584242 | MS.gene83025:intron | 20.0% |
| !! | AGAATCTTTATTAATTGTGA+GGG | + | chr1.4:17582924-17582943 | None:intergenic | 20.0% |
| !! | TAGAATCTTTATTAATTGTG+AGG | + | chr1.4:17582925-17582944 | None:intergenic | 20.0% |
| !! | TGTATAGATTCATACTATAA+AGG | - | chr1.4:17582946-17582965 | MS.gene83025:intron | 20.0% |
| !! | TTAAGTGATAAACTAAGTAT+TGG | - | chr1.4:17584581-17584600 | MS.gene83025:intron | 20.0% |
| !! | TTATCTGTATCAAATGAAAA+TGG | + | chr1.4:17583185-17583204 | None:intergenic | 20.0% |
| !! | TTTCAAACTATGTTATTCTT+GGG | + | chr1.4:17582095-17582114 | None:intergenic | 20.0% |
| !!! | AAATCAAGTTGAATTTATGA+TGG | - | chr1.4:17582246-17582265 | MS.gene83025:intron | 20.0% |
| !!! | ATTGGATTTTCATAACATTT+TGG | - | chr1.4:17582432-17582451 | MS.gene83025:intron | 20.0% |
| !!! | ATTTCGGTAATTTTAATGAA+TGG | - | chr1.4:17581658-17581677 | MS.gene83025:CDS | 20.0% |
| !!! | GCTTCTATTGATAATAAAAT+TGG | - | chr1.4:17584557-17584576 | MS.gene83025:intron | 20.0% |
| !!! | TATGAGCTTTTATTTTTGAT+TGG | - | chr1.4:17582414-17582433 | MS.gene83025:intron | 20.0% |
| !!! | TTTTCAAACTATGTTATTCT+TGG | + | chr1.4:17582096-17582115 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGATAGTAGCAT+TGG | - | chr1.4:17582672-17582691 | MS.gene83025:intron | 20.0% |
| ! | AAATCCGAAATCATTTGATT+TGG | - | chr1.4:17582882-17582901 | MS.gene83025:intron | 25.0% |
| ! | AATTAGTTAGGGAATTCAAA+TGG | - | chr1.4:17582821-17582840 | MS.gene83025:CDS | 25.0% |
| ! | ACCATTTATACAACATTGAT+TGG | - | chr1.4:17582120-17582139 | MS.gene83025:intron | 25.0% |
| ! | ATCATTTACAGTGAAAGAAA+AGG | - | chr1.4:17584854-17584873 | MS.gene83025:intron | 25.0% |
| ! | ATTAGTTAGGGAATTCAAAT+GGG | - | chr1.4:17582822-17582841 | MS.gene83025:CDS | 25.0% |
| ! | CTATTAATATGATAGAGTTC+CGG | + | chr1.4:17582307-17582326 | None:intergenic | 25.0% |
| ! | GCACACAAAATGTTAAATTA+AGG | + | chr1.4:17582561-17582580 | None:intergenic | 25.0% |
| ! | GTACAGTAAAATTTCAAATG+CGG | + | chr1.4:17583508-17583527 | None:intergenic | 25.0% |
| ! | GTTTCCAAATCAAATGATTT+CGG | + | chr1.4:17582889-17582908 | None:intergenic | 25.0% |
| ! | TAAGCACATGACTTAAAAAT+TGG | + | chr1.4:17583557-17583576 | None:intergenic | 25.0% |
| ! | TCATTTACAGTGAAAGAAAA+GGG | - | chr1.4:17584855-17584874 | MS.gene83025:intron | 25.0% |
| ! | TCCAATCAATGTTGTATAAA+TGG | + | chr1.4:17582124-17582143 | None:intergenic | 25.0% |
| ! | TTATTTAGTGTATGCAATTG+AGG | - | chr1.4:17583714-17583733 | MS.gene83025:intron | 25.0% |
| ! | TTCAAACTATGTTATTCTTG+GGG | + | chr1.4:17582094-17582113 | None:intergenic | 25.0% |
| ! | TTCAATATATTGAGATGCAA+AGG | - | chr1.4:17583283-17583302 | MS.gene83025:intron | 25.0% |
| ! | TTGCATACACTAAATAACAT+AGG | + | chr1.4:17583711-17583730 | None:intergenic | 25.0% |
| !! | AACATTGATTGGAAAATTGA+GGG | - | chr1.4:17582131-17582150 | MS.gene83025:intron | 25.0% |
| !! | AAGTGCATTTTATAGGAAAA+AGG | - | chr1.4:17581734-17581753 | MS.gene83025:CDS | 25.0% |
| !! | AGTGCATTTTATAGGAAAAA+GGG | - | chr1.4:17581735-17581754 | MS.gene83025:CDS | 25.0% |
| !! | ATGATATTTTGTGACTAAAG+AGG | + | chr1.4:17582528-17582547 | None:intergenic | 25.0% |
| !! | CATCAGAAATATCTGAAATA+TGG | + | chr1.4:17583146-17583165 | None:intergenic | 25.0% |
| !! | TAAGTTACATTAGCTTGAAT+AGG | - | chr1.4:17581699-17581718 | MS.gene83025:CDS | 25.0% |
| !! | TAATTTAACATTTTGTGTGC+AGG | - | chr1.4:17582561-17582580 | MS.gene83025:intron | 25.0% |
| !! | TGAAGAATTCTTTTCATTCT+CGG | - | chr1.4:17583254-17583273 | MS.gene83025:intron | 25.0% |
| !!! | ACTTTCAGATTTGTTTTGTT+TGG | - | chr1.4:17582990-17583009 | MS.gene83025:intron | 25.0% |
| !!! | GTTGAATGAGTTTTTTCTAA+TGG | - | chr1.4:17581625-17581644 | MS.gene83025:CDS | 25.0% |
| !!! | TACAAAGTGTTTTTGAATAC+CGG | - | chr1.4:17581852-17581871 | MS.gene83025:CDS | 25.0% |
| !!! | TATTGCTGATGAGTTTTTTT+TGG | - | chr1.4:17581490-17581509 | MS.gene83025:CDS | 25.0% |
| !!! | TGAGTTTTTTTTGGATCTAA+TGG | - | chr1.4:17581499-17581518 | MS.gene83025:CDS | 25.0% |
| !!! | TGATGGATTACAATTAGTTA+GGG | - | chr1.4:17582810-17582829 | MS.gene83025:CDS | 25.0% |
| !!! | TGTTAAATTAAGGTATTGCT+TGG | + | chr1.4:17582551-17582570 | None:intergenic | 25.0% |
| !!! | TTAATATAGGGTTCTAAGAT+AGG | - | chr1.4:17583588-17583607 | MS.gene83025:intron | 25.0% |
| !!! | TTGATGGATTACAATTAGTT+AGG | - | chr1.4:17582809-17582828 | MS.gene83025:CDS | 25.0% |
| AACAATTCTTACGTCTTAAC+CGG | - | chr1.4:17584725-17584744 | MS.gene83025:intron | 30.0% | |
| AATTCACAAGCCATTTGAAT+TGG | - | chr1.4:17582271-17582290 | MS.gene83025:intron | 30.0% | |
| ACATGACTTAAAAATTGGTG+CGG | + | chr1.4:17583552-17583571 | None:intergenic | 30.0% | |
| ACTGCAATAGTTTAGCTATA+TGG | + | chr1.4:17583926-17583945 | None:intergenic | 30.0% | |
| AGTTGCTTATGTTACCTTTA+AGG | - | chr1.4:17583422-17583441 | MS.gene83025:intron | 30.0% | |
| ATCTTGGCTTATTTGACTAT+TGG | - | chr1.4:17582354-17582373 | MS.gene83025:intron | 30.0% | |
| ATTATCAATAGAAGCAACTG+CGG | + | chr1.4:17584552-17584571 | None:intergenic | 30.0% | |
| CACTGTAATTGTAATATACC+TGG | - | chr1.4:17582699-17582718 | MS.gene83025:intron | 30.0% | |
| CTTGATATAACCTTTCATCT+TGG | - | chr1.4:17582338-17582357 | MS.gene83025:intron | 30.0% | |
| GTAAGAATTGTTCATGATAG+CGG | + | chr1.4:17584717-17584736 | None:intergenic | 30.0% | |
| TAATTGTAATATACCTGGTC+AGG | - | chr1.4:17582704-17582723 | MS.gene83025:intron | 30.0% | |
| TATATTGCTTTCTGATGAAC+TGG | - | chr1.4:17582473-17582492 | MS.gene83025:intron | 30.0% | |
| TATGAATTCCAACAAAGTGA+GGG | + | chr1.4:17584323-17584342 | None:intergenic | 30.0% | |
| TATGTCAGAAAACAAACCAA+AGG | + | chr1.4:17582382-17582401 | None:intergenic | 30.0% | |
| TGTGGTTAATATCTTTGTCT+GGG | - | chr1.4:17583957-17583976 | MS.gene83025:intron | 30.0% | |
| TTATGAATTCCAACAAAGTG+AGG | + | chr1.4:17584324-17584343 | None:intergenic | 30.0% | |
| TTGCAGTCAAATTTATTGTG+TGG | - | chr1.4:17583939-17583958 | MS.gene83025:intron | 30.0% | |
| TTGGAATGAACCAATTCAAA+TGG | + | chr1.4:17582284-17582303 | None:intergenic | 30.0% | |
| ! | AAAATTTTCCCTCACTTTGT+TGG | - | chr1.4:17584312-17584331 | MS.gene83025:intron | 30.0% |
| ! | AACTTTGAGGACTCTTTAAA+CGG | - | chr1.4:17584902-17584921 | MS.gene83025:intron | 30.0% |
| ! | AATCAATGTTAGGTTTTCAG+TGG | - | chr1.4:17582727-17582746 | MS.gene83025:intron | 30.0% |
| ! | ACTCACATTTGAAACATGAA+CGG | + | chr1.4:17582653-17582672 | None:intergenic | 30.0% |
| ! | ATCAATGTTAGGTTTTCAGT+GGG | - | chr1.4:17582728-17582747 | MS.gene83025:intron | 30.0% |
| ! | CAACATTGATTGGAAAATTG+AGG | - | chr1.4:17582130-17582149 | MS.gene83025:intron | 30.0% |
| ! | GAAGAATTCTTTTCATTCTC+GGG | - | chr1.4:17583255-17583274 | MS.gene83025:intron | 30.0% |
| ! | GACAACGAAACTGATATTTT+CGG | + | chr1.4:17583832-17583851 | None:intergenic | 30.0% |
| ! | GCTCATAAAGTGCATTTTAT+AGG | - | chr1.4:17581727-17581746 | MS.gene83025:CDS | 30.0% |
| ! | GGATTTTCATAACATTTTGG+TGG | - | chr1.4:17582435-17582454 | MS.gene83025:intron | 30.0% |
| ! | TCACACGAAAATGTTTTACA+TGG | + | chr1.4:17584146-17584165 | None:intergenic | 30.0% |
| ! | TTTCACCTTTTCATTGACAA+TGG | + | chr1.4:17584612-17584631 | None:intergenic | 30.0% |
| !! | GCTATAATCTTGGTTACTTT+TGG | - | chr1.4:17583033-17583052 | MS.gene83025:CDS | 30.0% |
| !! | TATTTGACTATTGGTTCCTT+TGG | - | chr1.4:17582363-17582382 | MS.gene83025:intron | 30.0% |
| !!! | GTTTTGTTTGGAAGATAAGT+TGG | - | chr1.4:17583002-17583021 | MS.gene83025:CDS | 30.0% |
| AAGTCTCTTTCAGATCTATC+CGG | + | chr1.4:17584245-17584264 | None:intergenic | 35.0% | |
| AGGATAAAGTAGCAGCAATT+TGG | + | chr1.4:17583691-17583710 | None:intergenic | 35.0% | |
| ATAAAGGAACCGAAGATGAT+CGG | - | chr1.4:17582962-17582981 | MS.gene83025:intron | 35.0% | |
| ATATGCTCAGATGAACTTTG+AGG | - | chr1.4:17584889-17584908 | MS.gene83025:intron | 35.0% | |
| ATGGTTCAAAACCTGAAACT+AGG | + | chr1.4:17583907-17583926 | None:intergenic | 35.0% | |
| CAAATTAACTTCAGTGTCCT+AGG | - | chr1.4:17584098-17584117 | MS.gene83025:intron | 35.0% | |
| CAATGAAAAGGTGAAAGAGA+TGG | - | chr1.4:17584616-17584635 | MS.gene83025:intron | 35.0% | |
| CAATTGAAGACGTTCATCAA+TGG | + | chr1.4:17584513-17584532 | None:intergenic | 35.0% | |
| CACAACCATTGTCAATGAAA+AGG | - | chr1.4:17584604-17584623 | MS.gene83025:intron | 35.0% | |
| CACAACTAAAATACCAACAC+AGG | + | chr1.4:17583102-17583121 | None:intergenic | 35.0% | |
| CCATCAACAGTATTCAAATG+CGG | + | chr1.4:17582796-17582815 | None:intergenic | 35.0% | |
| CCTGTGAATGGATAAAATGT+TGG | - | chr1.4:17581948-17581967 | MS.gene83025:CDS | 35.0% | |
| CTAGGACACTGAAGTTAATT+TGG | + | chr1.4:17584100-17584119 | None:intergenic | 35.0% | |
| CTCACTTAACGACATAGAAA+TGG | + | chr1.4:17583768-17583787 | None:intergenic | 35.0% | |
| CTTTCCTAAAATGAAACCCT+TGG | + | chr1.4:17584468-17584487 | None:intergenic | 35.0% | |
| GAAGTATGATTGTGTAGTGT+TGG | - | chr1.4:17581527-17581546 | MS.gene83025:CDS | 35.0% | |
| GAATTCTTCAATGTCTTGCT+TGG | + | chr1.4:17583244-17583263 | None:intergenic | 35.0% | |
| GCAAATAACGCAAACATGTT+CGG | + | chr1.4:17583810-17583829 | None:intergenic | 35.0% | |
| GGCTGATTATGCTATAATCT+TGG | - | chr1.4:17583023-17583042 | MS.gene83025:CDS | 35.0% | |
| GTCAAATAAGCCAAGATGAA+AGG | + | chr1.4:17582351-17582370 | None:intergenic | 35.0% | |
| GTGTGGTTAATATCTTTGTC+TGG | - | chr1.4:17583956-17583975 | MS.gene83025:intron | 35.0% | |
| TAATATGATAGAGTTCCGGT+TGG | + | chr1.4:17582303-17582322 | None:intergenic | 35.0% | |
| TCATATCACATAACAGCTTG+AGG | + | chr1.4:17581560-17581579 | None:intergenic | 35.0% | |
| TGAAGTACGAGATGAACTTA+AGG | + | chr1.4:17582219-17582238 | None:intergenic | 35.0% | |
| TGGCAATATTTGAATCTGCT+AGG | + | chr1.4:17584126-17584145 | None:intergenic | 35.0% | |
| ! | AAGTCTTTTCCGATCATCTT+CGG | + | chr1.4:17582974-17582993 | None:intergenic | 35.0% |
| ! | CCAACATTTTATCCATTCAC+AGG | + | chr1.4:17581951-17581970 | None:intergenic | 35.0% |
| ! | GATTTTGTGACATCATCTTC+AGG | + | chr1.4:17584064-17584083 | None:intergenic | 35.0% |
| ! | GTTACCTTTAAGGATTCACA+GGG | - | chr1.4:17583432-17583451 | MS.gene83025:intron | 35.0% |
| ! | TGTTACCTTTAAGGATTCAC+AGG | - | chr1.4:17583431-17583450 | MS.gene83025:intron | 35.0% |
| ! | TTGAATTGGTTCATTCCAAC+CGG | - | chr1.4:17582285-17582304 | MS.gene83025:intron | 35.0% |
| !! | AATGGACTAGCATAAGACAA+TGG | + | chr1.4:17583750-17583769 | None:intergenic | 35.0% |
| !! | CAAGGGTTTCATTTTAGGAA+AGG | - | chr1.4:17584466-17584485 | MS.gene83025:intron | 35.0% |
| !! | TTTTTGAATACCGGCTAATG+TGG | - | chr1.4:17581861-17581880 | MS.gene83025:CDS | 35.0% |
| !!! | ACCAGCTTTACTGTCATTTT+CGG | + | chr1.4:17584954-17584973 | None:intergenic | 35.0% |
| AAACCCAACAGCTATGCTAA+AGG | + | chr1.4:17581896-17581915 | None:intergenic | 40.0% | |
| AACCCAACAGCTATGCTAAA+GGG | + | chr1.4:17581895-17581914 | None:intergenic | 40.0% | |
| AACTAACAGGAACTACTGCA+GGG | + | chr1.4:17584931-17584950 | None:intergenic | 40.0% | |
| AATAAGTACCATGCTTGCCA+AGG | - | chr1.4:17584448-17584467 | MS.gene83025:intron | 40.0% | |
| ACAACCAAAGGGTGACATTT+AGG | + | chr1.4:17583374-17583393 | None:intergenic | 40.0% | |
| ACAAGCTGAGGTGGAAAAAA+AGG | - | chr1.4:17584829-17584848 | MS.gene83025:intron | 40.0% | |
| ACTAGGGCACAGATAAGAAT+TGG | + | chr1.4:17583072-17583091 | None:intergenic | 40.0% | |
| AGCAGCAATTTGGTACTTAC+TGG | + | chr1.4:17583681-17583700 | None:intergenic | 40.0% | |
| AGGTGAAAGAGATGGATGAA+AGG | - | chr1.4:17584624-17584643 | MS.gene83025:intron | 40.0% | |
| ATAACTAGATGGCTACACTG+TGG | - | chr1.4:17584176-17584195 | MS.gene83025:intron | 40.0% | |
| ATAAGTACCATGCTTGCCAA+GGG | - | chr1.4:17584449-17584468 | MS.gene83025:intron | 40.0% | |
| CAAACAATGACAGTGACAAG+AGG | + | chr1.4:17582501-17582520 | None:intergenic | 40.0% | |
| CAACCAAAGGGTGACATTTA+GGG | + | chr1.4:17583373-17583392 | None:intergenic | 40.0% | |
| CAGTATTGCATACAAGTTGC+TGG | + | chr1.4:17584028-17584047 | None:intergenic | 40.0% | |
| CCGCATTTGAATACTGTTGA+TGG | - | chr1.4:17582793-17582812 | MS.gene83025:CDS | 40.0% | |
| CCTATTAACCTAATGCGTTG+AGG | - | chr1.4:17581988-17582007 | MS.gene83025:CDS | 40.0% | |
| CCTCAACGCATTAGGTTAAT+AGG | + | chr1.4:17581991-17582010 | None:intergenic | 40.0% | |
| CCTGCAGAATTACAACCAAA+GGG | + | chr1.4:17583385-17583404 | None:intergenic | 40.0% | |
| CCTTTGGTTGTAATTCTGCA+GGG | - | chr1.4:17583383-17583402 | MS.gene83025:intron | 40.0% | |
| CTAAAATACCAACACAGGAC+AGG | + | chr1.4:17583097-17583116 | None:intergenic | 40.0% | |
| GAAACATGAACGGTCCAATT+TGG | + | chr1.4:17582643-17582662 | None:intergenic | 40.0% | |
| GGTTAACCTGCTACTGTTTA+TGG | + | chr1.4:17582775-17582794 | None:intergenic | 40.0% | |
| TAACTAGATGGCTACACTGT+GGG | - | chr1.4:17584177-17584196 | MS.gene83025:intron | 40.0% | |
| TCCGAAAATGACAGTAAAGC+TGG | - | chr1.4:17584950-17584969 | MS.gene83025:CDS | 40.0% | |
| TCTTAACTGCATCAGCACTT+TGG | + | chr1.4:17584415-17584434 | None:intergenic | 40.0% | |
| TTACCCTAAATGTCACCCTT+TGG | - | chr1.4:17583367-17583386 | MS.gene83025:intron | 40.0% | |
| TTGGTACTTACTGGACTTGA+GGG | + | chr1.4:17583672-17583691 | None:intergenic | 40.0% | |
| TTTGAGGACTCTTTAAACGG+CGG | - | chr1.4:17584905-17584924 | MS.gene83025:intron | 40.0% | |
| TTTGGTACTTACTGGACTTG+AGG | + | chr1.4:17583673-17583692 | None:intergenic | 40.0% | |
| ! | AACCTAATGCGTTGAGGTTT+TGG | - | chr1.4:17581994-17582013 | MS.gene83025:CDS | 40.0% |
| ! | ACCTAATGCGTTGAGGTTTT+GGG | - | chr1.4:17581995-17582014 | MS.gene83025:CDS | 40.0% |
| ! | CTTGCCAAGGGTTTCATTTT+AGG | - | chr1.4:17584461-17584480 | MS.gene83025:intron | 40.0% |
| ! | TATTGCTGTTGCTGAGCAAA+AGG | - | chr1.4:17584676-17584695 | MS.gene83025:intron | 40.0% |
| !! | AAGTGCTGATGCAGTTAAGA+CGG | - | chr1.4:17584415-17584434 | MS.gene83025:intron | 40.0% |
| !! | TACACTGTGGGTGTTGTTTA+TGG | - | chr1.4:17584189-17584208 | MS.gene83025:intron | 40.0% |
| !!! | CTGTCATTTTCGGAACTAAC+AGG | + | chr1.4:17584944-17584963 | None:intergenic | 40.0% |
| AATGAAACCCTTGGCAAGCA+TGG | + | chr1.4:17584459-17584478 | None:intergenic | 45.0% | |
| ACCCAAAACCTCAACGCATT+AGG | + | chr1.4:17581999-17582018 | None:intergenic | 45.0% | |
| AGAGACAGCAGTTCTCTTGA+CGG | - | chr1.4:17583458-17583477 | MS.gene83025:intron | 45.0% | |
| AGCCCTTTAGCATAGCTGTT+GGG | - | chr1.4:17581890-17581909 | MS.gene83025:CDS | 45.0% | |
| ATATGTCACCATCTCACCTG+TGG | - | chr1.4:17583617-17583636 | MS.gene83025:intron | 45.0% | |
| ATGGCTTCTGCTCTTTGATC+AGG | + | chr1.4:17582601-17582620 | None:intergenic | 45.0% | |
| CAGGTGAGATGGTGACATAT+AGG | + | chr1.4:17583617-17583636 | None:intergenic | 45.0% | |
| CCCTGCAGAATTACAACCAA+AGG | + | chr1.4:17583386-17583405 | None:intergenic | 45.0% | |
| CCCTTTGGTTGTAATTCTGC+AGG | - | chr1.4:17583382-17583401 | MS.gene83025:intron | 45.0% | |
| CCTGGTCAGGAATCAATGTT+AGG | - | chr1.4:17582717-17582736 | MS.gene83025:intron | 45.0% | |
| CTTCTGCTCTTTGATCAGGA+TGG | + | chr1.4:17582597-17582616 | None:intergenic | 45.0% | |
| GAACTAACAGGAACTACTGC+AGG | + | chr1.4:17584932-17584951 | None:intergenic | 45.0% | |
| GTTATTCTTGGGGAGTCTAG+AGG | + | chr1.4:17582084-17582103 | None:intergenic | 45.0% | |
| TAGCCCTTTAGCATAGCTGT+TGG | - | chr1.4:17581889-17581908 | MS.gene83025:CDS | 45.0% | |
| TCACATCACTCACCTGTGAA+TGG | - | chr1.4:17581936-17581955 | MS.gene83025:CDS | 45.0% | |
| TGCATGCCATAAACAGTAGC+AGG | - | chr1.4:17582766-17582785 | MS.gene83025:intron | 45.0% | |
| TGCGTTTAGCGTTGTTGCAA+AGG | - | chr1.4:17584766-17584785 | MS.gene83025:intron | 45.0% | |
| TGCTCCCTGTGAATCCTTAA+AGG | + | chr1.4:17583439-17583458 | None:intergenic | 45.0% | |
| TTTGAATCTGCTAGGAGCCT+AGG | + | chr1.4:17584118-17584137 | None:intergenic | 45.0% | |
| ! | AGCTTGTTCAACCTTCTCCA+TGG | + | chr1.4:17584816-17584835 | None:intergenic | 45.0% |
| ! | ATTTTGTGTGCAGGCATCAG+TGG | - | chr1.4:17582570-17582589 | MS.gene83025:intron | 45.0% |
| ! | CTTGACTGACTCCTAGTTTC+AGG | - | chr1.4:17583893-17583912 | MS.gene83025:intron | 45.0% |
| ! | TGTTGGGTTTCAAGTGTGAG+TGG | - | chr1.4:17581906-17581925 | MS.gene83025:CDS | 45.0% |
| !! | AACTGCGGAAGAAGCATTAG+AGG | + | chr1.4:17584537-17584556 | None:intergenic | 45.0% |
| !! | CCTAACATTGATTCCTGACC+AGG | + | chr1.4:17582720-17582739 | None:intergenic | 45.0% |
| !!! | TAATGCGTTGAGGTTTTGGG+TGG | - | chr1.4:17581998-17582017 | MS.gene83025:CDS | 45.0% |
| AACAACGGGACCAATGCTCT+AGG | + | chr1.4:17582051-17582070 | None:intergenic | 50.0% | |
| ACGTCTTAACCGGAGCTTCA+TGG | - | chr1.4:17584735-17584754 | MS.gene83025:intron | 50.0% | |
| AGAGGTCACGGGAGAAACAA+CGG | + | chr1.4:17582066-17582085 | None:intergenic | 50.0% | |
| CAACACAGGACAGGACACTA+GGG | + | chr1.4:17583088-17583107 | None:intergenic | 50.0% | |
| CTCCTGTAGTCCTAGAGCAT+TGG | - | chr1.4:17582038-17582057 | MS.gene83025:CDS | 50.0% | |
| GAAGGTTGAACAAGCTGAGG+TGG | - | chr1.4:17584820-17584839 | MS.gene83025:intron | 50.0% | |
| GAGCAAAAGGCAAGTAGTGC+TGG | - | chr1.4:17584689-17584708 | MS.gene83025:intron | 50.0% | |
| GGAGAAGGTTGAACAAGCTG+AGG | - | chr1.4:17584817-17584836 | MS.gene83025:intron | 50.0% | |
| GGCTATAGTGCCACATTAGC+CGG | + | chr1.4:17581874-17581893 | None:intergenic | 50.0% | |
| !! | ACTTGAGGGAAGTGCTTCAG+GGG | + | chr1.4:17583658-17583677 | None:intergenic | 50.0% |
| !! | ATGCTCTAGGACTACAGGAG+AGG | + | chr1.4:17582038-17582057 | None:intergenic | 50.0% |
| !! | GACCAATGCTCTAGGACTAC+AGG | + | chr1.4:17582043-17582062 | None:intergenic | 50.0% |
| !! | GACTTGAGGGAAGTGCTTCA+GGG | + | chr1.4:17583659-17583678 | None:intergenic | 50.0% |
| !!! | TGAGGTTTTGGGTGGAGATG+TGG | - | chr1.4:17582006-17582025 | MS.gene83025:CDS | 50.0% |
| ACTCGACAGCCATGAAGCTC+CGG | + | chr1.4:17584747-17584766 | None:intergenic | 55.0% | |
| AGAAGCCATTCCCTGCTCCA+CGG | - | chr1.4:17582612-17582631 | MS.gene83025:intron | 55.0% | |
| CAGCACGATGACCATGGAGA+AGG | - | chr1.4:17584802-17584821 | MS.gene83025:intron | 55.0% | |
| CCAACACAGGACAGGACACT+AGG | + | chr1.4:17583089-17583108 | None:intergenic | 55.0% | |
| CCTAGTGTCCTGTCCTGTGT+TGG | - | chr1.4:17583086-17583105 | MS.gene83025:intron | 55.0% | |
| CGTTGTTGCAAAGGCAGCTG+AGG | - | chr1.4:17584775-17584794 | MS.gene83025:intron | 55.0% | |
| CTTGGGGAGTCTAGAGGTCA+CGG | + | chr1.4:17582078-17582097 | None:intergenic | 55.0% | |
| GAGGTCACGGGAGAAACAAC+GGG | + | chr1.4:17582065-17582084 | None:intergenic | 55.0% | |
| GCTCCACGGCTACACCAAAT+TGG | - | chr1.4:17582626-17582645 | MS.gene83025:intron | 55.0% | |
| GGATGTCAGCACGATGACCA+TGG | - | chr1.4:17584796-17584815 | MS.gene83025:intron | 55.0% | |
| GTACTGCTCCACAGGTGAGA+TGG | + | chr1.4:17583628-17583647 | None:intergenic | 55.0% | |
| TTGGGGAGTCTAGAGGTCAC+GGG | + | chr1.4:17582077-17582096 | None:intergenic | 55.0% | |
| ! | GAAGTGCTTCAGGGGGAAGT+TGG | + | chr1.4:17583650-17583669 | None:intergenic | 55.0% |
| ! | TTTGGTGTAGCCGTGGAGCA+GGG | + | chr1.4:17582625-17582644 | None:intergenic | 55.0% |
| !! | ATTTGGTGTAGCCGTGGAGC+AGG | + | chr1.4:17582626-17582645 | None:intergenic | 55.0% |
| !! | CTTGAGGGAAGTGCTTCAGG+GGG | + | chr1.4:17583657-17583676 | None:intergenic | 55.0% |
| !! | GGAAGTTGGTACTGCTCCAC+AGG | + | chr1.4:17583636-17583655 | None:intergenic | 55.0% |
| !! | GGACTTGAGGGAAGTGCTTC+AGG | + | chr1.4:17583660-17583679 | None:intergenic | 55.0% |
| !! | GGTCCAATTTGGTGTAGCCG+TGG | + | chr1.4:17582632-17582651 | None:intergenic | 55.0% |
| TGTAGCCGTGGAGCAGGGAA+TGG | + | chr1.4:17582620-17582639 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 17581482 | 17584988 | 17581482 | ID=MS.gene83025 |
| chr1.4 | mRNA | 17581482 | 17584988 | 17581482 | ID=MS.gene83025.t1;Parent=MS.gene83025 |
| chr1.4 | exon | 17584941 | 17584988 | 17584941 | ID=MS.gene83025.t1.exon1;Parent=MS.gene83025.t1 |
| chr1.4 | CDS | 17584941 | 17584988 | 17584941 | ID=cds.MS.gene83025.t1;Parent=MS.gene83025.t1 |
| chr1.4 | exon | 17583804 | 17583887 | 17583804 | ID=MS.gene83025.t1.exon2;Parent=MS.gene83025.t1 |
| chr1.4 | CDS | 17583804 | 17583887 | 17583804 | ID=cds.MS.gene83025.t1;Parent=MS.gene83025.t1 |
| chr1.4 | exon | 17583166 | 17583269 | 17583166 | ID=MS.gene83025.t1.exon3;Parent=MS.gene83025.t1 |
| chr1.4 | CDS | 17583166 | 17583269 | 17583166 | ID=cds.MS.gene83025.t1;Parent=MS.gene83025.t1 |
| chr1.4 | exon | 17582991 | 17583066 | 17582991 | ID=MS.gene83025.t1.exon4;Parent=MS.gene83025.t1 |
| chr1.4 | CDS | 17582991 | 17583066 | 17582991 | ID=cds.MS.gene83025.t1;Parent=MS.gene83025.t1 |
| chr1.4 | exon | 17582790 | 17582873 | 17582790 | ID=MS.gene83025.t1.exon5;Parent=MS.gene83025.t1 |
| chr1.4 | CDS | 17582790 | 17582873 | 17582790 | ID=cds.MS.gene83025.t1;Parent=MS.gene83025.t1 |
| chr1.4 | exon | 17581482 | 17582063 | 17581482 | ID=MS.gene83025.t1.exon6;Parent=MS.gene83025.t1 |
| chr1.4 | CDS | 17581482 | 17582063 | 17581482 | ID=cds.MS.gene83025.t1;Parent=MS.gene83025.t1 |
| Gene Sequence |
| Protein sequence |
