Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83049.t1 | XP_013466598.1 | 96.3 | 1053 | 39 | 0 | 1 | 1053 | 20 | 1072 | 0.00E+00 | 2041.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83049.t1 | Q9LQV2 | 52.7 | 1068 | 467 | 8 | 2 | 1057 | 21 | 1062 | 0.0e+00 | 1108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83049.t1 | A0A072VF26 | 96.3 | 1053 | 39 | 0 | 1 | 1053 | 20 | 1072 | 0.0e+00 | 2041.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene83049 | 0.847403 | 1.18E-59 | -1.69E-46 |
| MS.gene049711 | MS.gene83049 | 0.809647 | 1.71E-50 | -1.69E-46 |
| MS.gene049744 | MS.gene83049 | 0.805923 | 1.06E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene83049 | 0.828019 | 1.13E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene83049 | 0.810814 | 9.56E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene83049 | 0.809686 | 1.67E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene83049 | 0.818986 | 1.47E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene83049 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene83049 | 0.809356 | 1.97E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene83049 | 0.821384 | 4.16E-53 | -1.69E-46 |
| MS.gene05894 | MS.gene83049 | 0.802085 | 6.63E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene83049 | 0.81725 | 3.64E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83049.t1 | MTR_1g032590 | 95.932 | 1057 | 43 | 0 | 1 | 1057 | 20 | 1076 | 0.0 | 2096 |
| MS.gene83049.t1 | MTR_1g032610 | 53.661 | 1079 | 448 | 11 | 2 | 1057 | 23 | 1072 | 0.0 | 1136 |
| MS.gene83049.t1 | MTR_1g032630 | 53.789 | 1069 | 457 | 11 | 3 | 1057 | 24 | 1069 | 0.0 | 1136 |
| MS.gene83049.t1 | MTR_1g032720 | 53.501 | 1071 | 460 | 9 | 3 | 1057 | 633 | 1681 | 0.0 | 1124 |
| MS.gene83049.t1 | MTR_1g032720 | 49.505 | 606 | 281 | 7 | 3 | 588 | 24 | 624 | 0.0 | 580 |
| MS.gene83049.t1 | MTR_1g032610 | 54.917 | 1027 | 414 | 10 | 51 | 1057 | 12 | 1009 | 0.0 | 1115 |
| MS.gene83049.t1 | MTR_1g032630 | 52.229 | 785 | 342 | 9 | 3 | 773 | 24 | 789 | 0.0 | 793 |
| MS.gene83049.t1 | MTR_4g106660 | 37.928 | 1081 | 624 | 15 | 1 | 1049 | 26 | 1091 | 0.0 | 733 |
| MS.gene83049.t1 | MTR_4g106660 | 50.000 | 106 | 53 | 0 | 818 | 923 | 1113 | 1218 | 4.07e-24 | 110 |
| MS.gene83049.t1 | MTR_4g106660 | 37.928 | 1081 | 624 | 15 | 1 | 1049 | 26 | 1091 | 0.0 | 732 |
| MS.gene83049.t1 | MTR_1g032710 | 58.708 | 511 | 191 | 3 | 535 | 1042 | 1 | 494 | 0.0 | 619 |
| MS.gene83049.t1 | MTR_3g107390 | 34.830 | 1091 | 606 | 25 | 29 | 1049 | 80 | 1135 | 0.0 | 578 |
| MS.gene83049.t1 | MTR_6g088660 | 23.188 | 552 | 314 | 21 | 450 | 917 | 303 | 828 | 1.56e-15 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83049.t1 | AT1G14790 | 52.622 | 1068 | 468 | 8 | 2 | 1057 | 21 | 1062 | 0.0 | 1139 |
| MS.gene83049.t1 | AT4G11130 | 40.183 | 1090 | 587 | 27 | 1 | 1050 | 27 | 1091 | 0.0 | 719 |
| MS.gene83049.t1 | AT3G49500 | 35.878 | 1048 | 572 | 27 | 76 | 1057 | 130 | 1143 | 9.07e-180 | 557 |
| MS.gene83049.t1 | AT3G49500 | 35.878 | 1048 | 572 | 27 | 76 | 1057 | 130 | 1143 | 9.07e-180 | 557 |
| MS.gene83049.t1 | AT3G49500 | 35.878 | 1048 | 572 | 27 | 76 | 1057 | 130 | 1143 | 9.07e-180 | 557 |
| MS.gene83049.t1 | AT3G49500 | 35.878 | 1048 | 572 | 27 | 76 | 1057 | 130 | 1143 | 9.07e-180 | 557 |
| MS.gene83049.t1 | AT3G49500 | 35.878 | 1048 | 572 | 27 | 76 | 1057 | 130 | 1143 | 9.07e-180 | 557 |
| MS.gene83049.t1 | AT2G19930 | 24.523 | 681 | 378 | 27 | 330 | 919 | 201 | 836 | 4.45e-27 | 119 |
| MS.gene83049.t1 | AT2G19930 | 24.523 | 681 | 378 | 27 | 330 | 919 | 195 | 830 | 5.29e-27 | 119 |
| MS.gene83049.t1 | AT2G19930 | 24.412 | 680 | 386 | 26 | 330 | 919 | 195 | 836 | 1.32e-26 | 118 |
| MS.gene83049.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 333 | 917 | 208 | 833 | 5.99e-23 | 106 |
| MS.gene83049.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 333 | 917 | 209 | 834 | 6.36e-23 | 106 |
| MS.gene83049.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 333 | 917 | 208 | 833 | 7.23e-23 | 105 |
| MS.gene83049.t1 | AT2G19920 | 23.043 | 677 | 378 | 26 | 333 | 917 | 222 | 847 | 7.99e-23 | 105 |
| MS.gene83049.t1 | AT2G19910 | 26.134 | 463 | 260 | 18 | 510 | 917 | 403 | 838 | 8.80e-22 | 102 |
| MS.gene83049.t1 | AT2G19910 | 25.636 | 472 | 260 | 17 | 510 | 917 | 403 | 847 | 8.82e-21 | 99.4 |
Find 163 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACCACAGAAATATATTT+TGG | 0.177661 | 1.4:-17166951 | None:intergenic |
| GATCATGACATGAAGATTAA+TGG | 0.221198 | 1.4:+17169218 | MS.gene83049:CDS |
| TATGTCCTCTATTTCTTCTA+AGG | 0.262191 | 1.4:+17168047 | MS.gene83049:CDS |
| AGTTCCATTTCTTTAGATAA+TGG | 0.289085 | 1.4:+17166893 | MS.gene83049:CDS |
| TACCAAGTTGATGAACTTAA+TGG | 0.295577 | 1.4:+17169289 | MS.gene83049:CDS |
| TAAAGCAACTAACCTGAAAA+AGG | 0.303754 | 1.4:-17166273 | None:intergenic |
| TAAGGAATGAAGCTAGAAAT+TGG | 0.316555 | 1.4:+17169426 | MS.gene83049:CDS |
| CCACAGGTGATATAAGAAAA+TGG | 0.319961 | 1.4:+17167260 | MS.gene83049:CDS |
| GAACATTTCCACTGTAAGAT+AGG | 0.336252 | 1.4:-17165973 | None:intergenic |
| CGTTCATCCGATTTGTTGTC+AGG | 0.338642 | 1.4:+17167070 | MS.gene83049:CDS |
| TACTGTTTCTCTGATGGAAT+AGG | 0.353907 | 1.4:+17167430 | MS.gene83049:CDS |
| TATGGCAAGTTGAATCCTTC+TGG | 0.354659 | 1.4:-17166644 | None:intergenic |
| AGAGAAAACTTAGTGTACTT+TGG | 0.354703 | 1.4:+17166095 | MS.gene83049:CDS |
| TCAAGTGCTTCTGTTAAATT+CGG | 0.356052 | 1.4:+17166124 | MS.gene83049:CDS |
| GAACGATTACAGACATGTTA+AGG | 0.356086 | 1.4:+17167815 | MS.gene83049:CDS |
| GCTTACAACATGGATGGTAT+TGG | 0.360043 | 1.4:+17166046 | MS.gene83049:CDS |
| TCAAGGATCGAGTCTTTAAA+AGG | 0.361407 | 1.4:+17167716 | MS.gene83049:CDS |
| GAGAAAACTTAGTGTACTTT+GGG | 0.363652 | 1.4:+17166096 | MS.gene83049:CDS |
| CTCAAAATCCTTACATCTCC+TGG | 0.368528 | 1.4:-17168141 | None:intergenic |
| AGGAAGCTTATGACAATCAT+TGG | 0.375647 | 1.4:+17166426 | MS.gene83049:CDS |
| TATCAATCAAACAGCATAAT+CGG | 0.377820 | 1.4:+17169110 | MS.gene83049:CDS |
| AGGGAAAATATCATATGAAT+TGG | 0.379623 | 1.4:+17167450 | MS.gene83049:CDS |
| CAATCCATTATCTAAAGAAA+TGG | 0.380201 | 1.4:-17166897 | None:intergenic |
| CACTCTATAAGTTCTACTCT+TGG | 0.380382 | 1.4:-17169648 | None:intergenic |
| TGGATGTTTGCACCGAGAAC+TGG | 0.381059 | 1.4:+17167232 | MS.gene83049:CDS |
| GAAAGTTTAGTTGATGAGTT+AGG | 0.381385 | 1.4:-17167571 | None:intergenic |
| AAAAGGAAAATATATTGTTA+AGG | 0.383734 | 1.4:+17168083 | MS.gene83049:CDS |
| TCACTTCCTGAACATTCATT+AGG | 0.385378 | 1.4:-17168546 | None:intergenic |
| ATGCTGTTTGATTGATAAGT+TGG | 0.385994 | 1.4:-17169104 | None:intergenic |
| AGGAAGTTATCGGTGTCTTC+AGG | 0.387986 | 1.4:-17167010 | None:intergenic |
| ACACACTGTGTTTGCTGATA+AGG | 0.389362 | 1.4:+17168932 | MS.gene83049:CDS |
| TCTCTACAGCAAGAACAGTT+TGG | 0.392593 | 1.4:-17165853 | None:intergenic |
| GAAACAAGGACATTAAAATA+TGG | 0.393289 | 1.4:+17167985 | MS.gene83049:CDS |
| TGGATGAAGACATGGATTCT+TGG | 0.394031 | 1.4:-17168121 | None:intergenic |
| AAAGGAAAATATATTGTTAA+GGG | 0.397381 | 1.4:+17168084 | MS.gene83049:CDS |
| TGATCATGATGTCACATTAC+AGG | 0.397919 | 1.4:+17168668 | MS.gene83049:CDS |
| GCCGTTGATTTCGCAAAATC+CGG | 0.398804 | 1.4:+17169011 | MS.gene83049:CDS |
| TCTATTTCTTCTAAGGGCAT+TGG | 0.408929 | 1.4:+17168054 | MS.gene83049:CDS |
| GAGATATCTACTTTGTCTGT+TGG | 0.411478 | 1.4:+17168577 | MS.gene83049:CDS |
| AAAGAAATGGAACTAGATAT+AGG | 0.411648 | 1.4:-17166884 | None:intergenic |
| CCACATCCTAATGAATGTTC+AGG | 0.418179 | 1.4:+17168540 | MS.gene83049:CDS |
| ACTGTTTCTCTGATGGAATA+GGG | 0.419913 | 1.4:+17167431 | MS.gene83049:CDS |
| AAAACAATATCCAGATTTCA+TGG | 0.421729 | 1.4:+17169067 | MS.gene83049:CDS |
| TCTGCATTTCAAATCAGATA+TGG | 0.422172 | 1.4:+17167520 | MS.gene83049:CDS |
| GAAAGAAAAGGTTCATTTGT+CGG | 0.422221 | 1.4:-17167862 | None:intergenic |
| CTTGGCTTTGACAAAATGTC+AGG | 0.422783 | 1.4:-17166016 | None:intergenic |
| AAGATCAATGTTAGGATGCT+TGG | 0.424863 | 1.4:+17167960 | MS.gene83049:CDS |
| TGTTTCTCCAACCATTGAAC+AGG | 0.435706 | 1.4:-17166830 | None:intergenic |
| ATCAAATACTGTTTCTCTGA+TGG | 0.444190 | 1.4:+17167424 | MS.gene83049:CDS |
| AGATATCTACTTTGTCTGTT+GGG | 0.445837 | 1.4:+17168578 | MS.gene83049:CDS |
| TGCTCTTATTCCTCCTCATC+GGG | 0.447459 | 1.4:+17168605 | MS.gene83049:CDS |
| TGTACCTTCCTTACATCATA+TGG | 0.448881 | 1.4:+17168173 | MS.gene83049:CDS |
| CGGAAAGGAAGATCAATGTT+AGG | 0.451061 | 1.4:+17167952 | MS.gene83049:CDS |
| CTTATGCTATTGCTTCTGCT+TGG | 0.458295 | 1.4:+17169504 | MS.gene83049:CDS |
| CGATTCGAAAGATTCACTTC+AGG | 0.464338 | 1.4:-17166971 | None:intergenic |
| CTCCATTAAGTTCATCAACT+TGG | 0.469777 | 1.4:-17169291 | None:intergenic |
| TTAAGGGAAATGATTATTTG+TGG | 0.471129 | 1.4:+17167832 | MS.gene83049:CDS |
| CCTGTGGTTAGTCCAGTTCT+CGG | 0.472970 | 1.4:-17167244 | None:intergenic |
| TGCTGATAAGGAACCTGAAA+AGG | 0.473428 | 1.4:+17168944 | MS.gene83049:CDS |
| AACGATTACAGACATGTTAA+GGG | 0.477883 | 1.4:+17167816 | MS.gene83049:CDS |
| GCAAAATATGCAGCAAGGCT+TGG | 0.480669 | 1.4:+17167313 | MS.gene83049:CDS |
| AAAATCTTTCAATGATAGAA+AGG | 0.485099 | 1.4:+17169370 | MS.gene83049:CDS |
| ATGAACTTAATGGAGTACTA+TGG | 0.486399 | 1.4:+17169299 | MS.gene83049:CDS |
| TTCACCCCATCATGCTGCAT+TGG | 0.488452 | 1.4:+17166464 | MS.gene83049:CDS |
| CTCAACATCATGGAAAGAAA+AGG | 0.489664 | 1.4:-17167874 | None:intergenic |
| CTGCTCTTATTCCTCCTCAT+CGG | 0.490260 | 1.4:+17168604 | MS.gene83049:CDS |
| GTCTTCATCCAGGAGATGTA+AGG | 0.496818 | 1.4:+17168133 | MS.gene83049:CDS |
| ATGTCCTCTATTTCTTCTAA+GGG | 0.500650 | 1.4:+17168048 | MS.gene83049:CDS |
| GAATAAGTTATATCAGATGA+AGG | 0.500708 | 1.4:+17166793 | MS.gene83049:CDS |
| AAGAATTGCAGCTCAAAGCT+AGG | 0.502836 | 1.4:+17167920 | MS.gene83049:CDS |
| GAGATTAAGCATCATAAAGA+TGG | 0.503270 | 1.4:+17165872 | MS.gene83049:CDS |
| CATTTCTTTAGATAATGGAT+TGG | 0.507709 | 1.4:+17166898 | MS.gene83049:CDS |
| TTAGATGGTGAATGATCCAT+TGG | 0.508279 | 1.4:-17168633 | None:intergenic |
| GATGGTATTGGAATACACTT+TGG | 0.512546 | 1.4:+17166058 | MS.gene83049:CDS |
| AGAAACGCGAAGGAAGTTAT+CGG | 0.513632 | 1.4:-17167020 | None:intergenic |
| AGAGGAACCTGACAACAAAT+CGG | 0.515016 | 1.4:-17167077 | None:intergenic |
| AATGCCCTTAGAAGAAATAG+AGG | 0.516330 | 1.4:-17168052 | None:intergenic |
| ACAGTCCACCATATGATGTA+AGG | 0.516847 | 1.4:-17168181 | None:intergenic |
| CGATGAGGAGGAATAAGAGC+AGG | 0.517920 | 1.4:-17168603 | None:intergenic |
| AGGTGATATAAGAAAATGGA+TGG | 0.520503 | 1.4:+17167264 | MS.gene83049:CDS |
| ATTGTCCAATGCAGCATGAT+GGG | 0.523291 | 1.4:-17166469 | None:intergenic |
| CTCAATTCGCGATATGCTCT+CGG | 0.524264 | 1.4:-17166215 | None:intergenic |
| AGAAACAAAGGTTCATCAAA+GGG | 0.524990 | 1.4:+17167117 | MS.gene83049:CDS |
| ATCGTTCTGTTGTCCACACT+CGG | 0.527119 | 1.4:+17167691 | MS.gene83049:CDS |
| TTCGCAAGCTCTATACATGA+AGG | 0.527235 | 1.4:-17168975 | None:intergenic |
| CTTGCACATGCTATTTCTCA+AGG | 0.527940 | 1.4:-17167593 | None:intergenic |
| TACATTGTCAAGGACACCTT+AGG | 0.530126 | 1.4:+17168894 | MS.gene83049:CDS |
| TCTTACCTTCTCCCTTTCTG+TGG | 0.533280 | 1.4:-17168213 | None:intergenic |
| AATGATAGAAAGGACAAAGA+AGG | 0.534460 | 1.4:+17169380 | MS.gene83049:CDS |
| CCTGAACATTCATTAGGATG+TGG | 0.535870 | 1.4:-17168540 | None:intergenic |
| CTTACCTTCTCCCTTTCTGT+GGG | 0.538379 | 1.4:-17168212 | None:intergenic |
| ACATATTGTTCTCAACATCA+TGG | 0.538517 | 1.4:-17167884 | None:intergenic |
| AAAATATATTGTTAAGGGGA+AGG | 0.542337 | 1.4:+17168089 | MS.gene83049:CDS |
| TGCTGTTGCAATAACTCCTA+AGG | 0.542803 | 1.4:-17168910 | None:intergenic |
| GAGAAACAAAGGTTCATCAA+AGG | 0.542888 | 1.4:+17167116 | MS.gene83049:CDS |
| TTTGATCTTGAGAAACAACT+TGG | 0.543715 | 1.4:+17166581 | MS.gene83049:CDS |
| GTCAGTTACGCAGTGCTCCT+CGG | 0.544392 | 1.4:+17166366 | MS.gene83049:intron |
| AGTCTTTAAAAGGAAGCAAA+GGG | 0.544858 | 1.4:+17167726 | MS.gene83049:CDS |
| ATCTTTGCTTACAACATGGA+TGG | 0.545079 | 1.4:+17166040 | MS.gene83049:CDS |
| TCAAGAGAAACAGTGAGTGT+TGG | 0.545595 | 1.4:+17167352 | MS.gene83049:CDS |
| CCTGATATAGAATTGAAAAG+AGG | 0.545856 | 1.4:+17167397 | MS.gene83049:CDS |
| GTTGCTATGATCCTGTTCAA+TGG | 0.545883 | 1.4:+17166819 | MS.gene83049:CDS |
| TTTCGCAAAATCCGGCGTGC+CGG | 0.546053 | 1.4:+17169019 | MS.gene83049:CDS |
| CTATGATCCTGTTCAATGGT+TGG | 0.546223 | 1.4:+17166823 | MS.gene83049:CDS |
| CCTTCTGGTGGAATCACCAT+GGG | 0.546859 | 1.4:-17166629 | None:intergenic |
| ATCATGCAGTGATGTCACTA+AGG | 0.546956 | 1.4:+17169408 | MS.gene83049:CDS |
| TGTCAATTGCTTGCAAAGGA+AGG | 0.548121 | 1.4:-17166709 | None:intergenic |
| ATGTTGTAAGCAAAGATCCT+TGG | 0.552810 | 1.4:-17166034 | None:intergenic |
| ACAACAGAACGATTACTTGA+CGG | 0.558329 | 1.4:-17167681 | None:intergenic |
| AAGAATCCATGTCTTCATCC+AGG | 0.558868 | 1.4:+17168123 | MS.gene83049:CDS |
| TCCTCATCGGGAAAATCCAA+TGG | 0.563415 | 1.4:+17168617 | MS.gene83049:CDS |
| AAATCAAATTCTCAAGGTGG+TGG | 0.564476 | 1.4:+17169467 | MS.gene83049:CDS |
| GTTGTCCACACTCGGTGTCA+AGG | 0.564478 | 1.4:+17167699 | MS.gene83049:CDS |
| GAGTCTTTAAAAGGAAGCAA+AGG | 0.569738 | 1.4:+17167725 | MS.gene83049:CDS |
| GATTGTCCAATGCAGCATGA+TGG | 0.570730 | 1.4:-17166470 | None:intergenic |
| ATCAGATATGGTGGATACAA+AGG | 0.572566 | 1.4:+17167532 | MS.gene83049:CDS |
| TCGATCCTTGACACCGAGTG+TGG | 0.576357 | 1.4:-17167704 | None:intergenic |
| ATCATGTCGAGTGCATTGAA+TGG | 0.577024 | 1.4:-17167784 | None:intergenic |
| AAGTTGTTTCTCAAGATCAA+AGG | 0.577468 | 1.4:-17166579 | None:intergenic |
| TATCTGATTTGAAATGCAGA+TGG | 0.580249 | 1.4:-17167517 | None:intergenic |
| GCATTTCAAATCAGATATGG+TGG | 0.580941 | 1.4:+17167523 | MS.gene83049:CDS |
| TCTGTCCACGTCTATACAAG+AGG | 0.585369 | 1.4:-17167095 | None:intergenic |
| TTAGTGTCAATTGCTTGCAA+AGG | 0.587391 | 1.4:-17166713 | None:intergenic |
| TACTCTTATTCAGATAAAGA+AGG | 0.588825 | 1.4:+17169619 | MS.gene83049:intron |
| AAGGAAAATATATTGTTAAG+GGG | 0.591481 | 1.4:+17168085 | MS.gene83049:CDS |
| TGGTACTTCAGCCGGCACGC+CGG | 0.600336 | 1.4:-17169030 | None:intergenic |
| ATAAGAAAATCAAATTCTCA+AGG | 0.603489 | 1.4:+17169461 | MS.gene83049:CDS |
| CCCTCCAAAATATATTTCTG+TGG | 0.606687 | 1.4:+17166947 | MS.gene83049:CDS |
| TCCTTCTGGTGGAATCACCA+TGG | 0.610011 | 1.4:-17166630 | None:intergenic |
| TGAATGTTCAGGAAGTGACT+TGG | 0.612881 | 1.4:+17168551 | MS.gene83049:CDS |
| ACTTGACGGTTAAGAAAGCA+CGG | 0.614109 | 1.4:-17167667 | None:intergenic |
| CAATACTAGATGTATTGTCA+TGG | 0.614959 | 1.4:+17167632 | MS.gene83049:CDS |
| GGCAAGTTGAATCCTTCTGG+TGG | 0.616684 | 1.4:-17166641 | None:intergenic |
| ACATCTCCTGGATGAAGACA+TGG | 0.618058 | 1.4:-17168129 | None:intergenic |
| CCCATGGTGATTCCACCAGA+AGG | 0.619746 | 1.4:+17166629 | MS.gene83049:CDS |
| CTGACAACAAATCGGATGAA+CGG | 0.624115 | 1.4:-17167069 | None:intergenic |
| TCGCAAGCTCTATACATGAA+GGG | 0.624470 | 1.4:-17168974 | None:intergenic |
| ACTTTGGCTACAGGATGTAG+AGG | 0.624783 | 1.4:+17168857 | MS.gene83049:intron |
| TGTTCAGGAAGTGACTTGGA+TGG | 0.629681 | 1.4:+17168555 | MS.gene83049:CDS |
| TCCACCATATGATGTAAGGA+AGG | 0.632969 | 1.4:-17168177 | None:intergenic |
| TTTCACTCACTACATTGTCA+AGG | 0.634274 | 1.4:+17168884 | MS.gene83049:CDS |
| GGTGATATAAGAAAATGGAT+GGG | 0.634803 | 1.4:+17167265 | MS.gene83049:CDS |
| CCGAGAACTGGACTAACCAC+AGG | 0.638320 | 1.4:+17167244 | MS.gene83049:CDS |
| ACAGAAGCAGAAATAATCAG+TGG | 0.638823 | 1.4:+17169329 | MS.gene83049:CDS |
| AGGTTCCTCTTGTATAGACG+TGG | 0.643676 | 1.4:+17167090 | MS.gene83049:CDS |
| CATCAACAAAAGAAACGCGA+AGG | 0.645316 | 1.4:-17167030 | None:intergenic |
| AAGGACATTAAAATATGGAG+AGG | 0.645356 | 1.4:+17167990 | MS.gene83049:CDS |
| AAGGATCTTTGCTTACAACA+TGG | 0.646173 | 1.4:+17166036 | MS.gene83049:CDS |
| AGACGTGGACAGAGAAACAA+AGG | 0.646727 | 1.4:+17167105 | MS.gene83049:CDS |
| TGAACTTCCACAAAATACCG+AGG | 0.651513 | 1.4:+17166508 | MS.gene83049:CDS |
| ATGTGGCAAAATATGCAGCA+AGG | 0.659612 | 1.4:+17167308 | MS.gene83049:CDS |
| ACCTTCCTTACATCATATGG+TGG | 0.663906 | 1.4:+17168176 | MS.gene83049:CDS |
| GATGAGGAGGAATAAGAGCA+GGG | 0.664145 | 1.4:-17168602 | None:intergenic |
| AGAAAATCAAATTCTCAAGG+TGG | 0.674350 | 1.4:+17169464 | MS.gene83049:CDS |
| GTGCAACATTCTTCACCTCG+CGG | 0.681079 | 1.4:-17169142 | None:intergenic |
| TAGGATGCTTGGATGAAACA+AGG | 0.681329 | 1.4:+17167971 | MS.gene83049:CDS |
| GACATCATGATCAACATGCA+TGG | 0.687239 | 1.4:-17168658 | None:intergenic |
| GCACTCGACATGATGTCACA+AGG | 0.688978 | 1.4:+17167793 | MS.gene83049:CDS |
| ACTAAACACCTATCTTACAG+TGG | 0.705894 | 1.4:+17165965 | MS.gene83049:CDS |
| TTGTCCAATGCAGCATGATG+GGG | 0.706800 | 1.4:-17166468 | None:intergenic |
| AATTGCGCGATAACTCAGCG+TGG | 0.742122 | 1.4:+17167212 | MS.gene83049:CDS |
| AATCGGAAAGCTTTACCGCG+AGG | 0.742148 | 1.4:+17169127 | MS.gene83049:CDS |
| CTTCTGGTGGAATCACCATG+GGG | 0.748577 | 1.4:-17166628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATTTTTATATACAAT+AGG | - | chr1.4:17168780-17168799 | None:intergenic | 10.0% |
| !! | AAAAGGAAAATATATTGTTA+AGG | + | chr1.4:17168083-17168102 | MS.gene83049:CDS | 15.0% |
| !! | AAAGGAAAATATATTGTTAA+GGG | + | chr1.4:17168084-17168103 | MS.gene83049:CDS | 15.0% |
| !!! | TATATACATTTTTCTTAATC+TGG | - | chr1.4:17166152-17166171 | None:intergenic | 15.0% |
| !!! | TATTCAAATTTTATTCTTTG+TGG | - | chr1.4:17166758-17166777 | None:intergenic | 15.0% |
| !! | AAAATCTTTCAATGATAGAA+AGG | + | chr1.4:17169370-17169389 | MS.gene83049:CDS | 20.0% |
| !! | AAGGAAAATATATTGTTAAG+GGG | + | chr1.4:17168085-17168104 | MS.gene83049:CDS | 20.0% |
| !! | ATAAGAAAATCAAATTCTCA+AGG | + | chr1.4:17169461-17169480 | MS.gene83049:CDS | 20.0% |
| !! | TAAAAAATGGCATAGAAATT+GGG | + | chr1.4:17167152-17167171 | MS.gene83049:CDS | 20.0% |
| !!! | TTCTGAAATCAAGTTTTTTA+AGG | + | chr1.4:17166406-17166425 | MS.gene83049:CDS | 20.0% |
| !!! | TTTTAGTGAATGATTTTTTG+AGG | - | chr1.4:17169178-17169197 | None:intergenic | 20.0% |
| !!! | TTTTGTAACAAATGATTGAA+TGG | - | chr1.4:17168376-17168395 | None:intergenic | 20.0% |
| !!! | TTTTTGAAACAAATGTTGAA+TGG | - | chr1.4:17168268-17168287 | None:intergenic | 20.0% |
| ! | AAAAAATGGCATAGAAATTG+GGG | + | chr1.4:17167153-17167172 | MS.gene83049:CDS | 25.0% |
| ! | AAAACAATATCCAGATTTCA+TGG | + | chr1.4:17169067-17169086 | MS.gene83049:CDS | 25.0% |
| ! | AAAATATATTGTTAAGGGGA+AGG | + | chr1.4:17168089-17168108 | MS.gene83049:CDS | 25.0% |
| ! | AAAGAAATGGAACTAGATAT+AGG | - | chr1.4:17166887-17166906 | None:intergenic | 25.0% |
| ! | AACATATCATCCTAGTTATT+GGG | + | chr1.4:17169535-17169554 | MS.gene83049:intron | 25.0% |
| ! | AGGGAAAATATCATATGAAT+TGG | + | chr1.4:17167450-17167469 | MS.gene83049:CDS | 25.0% |
| ! | AGGTATGAGTAAAATAGTAT+AGG | + | chr1.4:17168333-17168352 | MS.gene83049:intron | 25.0% |
| ! | AGTTCCATTTCTTTAGATAA+TGG | + | chr1.4:17166893-17166912 | MS.gene83049:CDS | 25.0% |
| ! | ATATCTCTTCCAAGAAAAAA+TGG | + | chr1.4:17168024-17168043 | MS.gene83049:CDS | 25.0% |
| ! | CAATCCATTATCTAAAGAAA+TGG | - | chr1.4:17166900-17166919 | None:intergenic | 25.0% |
| ! | CTAAAAAATGGCATAGAAAT+TGG | + | chr1.4:17167151-17167170 | MS.gene83049:CDS | 25.0% |
| ! | GAAACAAGGACATTAAAATA+TGG | + | chr1.4:17167985-17168004 | MS.gene83049:CDS | 25.0% |
| ! | GAATAAGTTATATCAGATGA+AGG | + | chr1.4:17166793-17166812 | MS.gene83049:CDS | 25.0% |
| ! | GATTATATTCATTATGCGTA+TGG | + | chr1.4:17168475-17168494 | MS.gene83049:intron | 25.0% |
| ! | TAACAAATGATTGAATGGAT+AGG | - | chr1.4:17168371-17168390 | None:intergenic | 25.0% |
| ! | TAACATATCATCCTAGTTAT+TGG | + | chr1.4:17169534-17169553 | MS.gene83049:intron | 25.0% |
| ! | TACAAAATCAACATAACTTG+AGG | + | chr1.4:17168389-17168408 | MS.gene83049:intron | 25.0% |
| ! | TACTCTTATTCAGATAAAGA+AGG | + | chr1.4:17169619-17169638 | MS.gene83049:intron | 25.0% |
| ! | TATATACAATAGGCAAAACT+AGG | - | chr1.4:17168770-17168789 | None:intergenic | 25.0% |
| ! | TATCAATCAAACAGCATAAT+CGG | + | chr1.4:17169110-17169129 | MS.gene83049:CDS | 25.0% |
| ! | TTAAGGGAAATGATTATTTG+TGG | + | chr1.4:17167832-17167851 | MS.gene83049:CDS | 25.0% |
| ! | TTGAATGGATAAGAAATTTG+TGG | - | chr1.4:17168253-17168272 | None:intergenic | 25.0% |
| !! | AGTTTGAACAGAATTTTGTA+TGG | - | chr1.4:17166665-17166684 | None:intergenic | 25.0% |
| !! | TTTTCATGAAATCAAGAATG+TGG | + | chr1.4:17167291-17167310 | MS.gene83049:CDS | 25.0% |
| !!! | AATCTGGATATTGTTTTACA+TGG | - | chr1.4:17169064-17169083 | None:intergenic | 25.0% |
| !!! | ATTTTTCTGCTATTTGTCTA+AGG | + | chr1.4:17166171-17166190 | MS.gene83049:CDS | 25.0% |
| !!! | CATTTCTTTAGATAATGGAT+TGG | + | chr1.4:17166898-17166917 | MS.gene83049:CDS | 25.0% |
| !!! | TATCTTCTTTTTGTGTCATT+TGG | - | chr1.4:17168712-17168731 | None:intergenic | 25.0% |
| !!! | TGACACTAATCTTTTTCATA+TGG | + | chr1.4:17166727-17166746 | MS.gene83049:CDS | 25.0% |
| !!! | TTTTGAGAAGTACACAAAAA+TGG | + | chr1.4:17169241-17169260 | MS.gene83049:CDS | 25.0% |
| AAAATCAACATAACTTGAGG+TGG | + | chr1.4:17168392-17168411 | MS.gene83049:intron | 30.0% | |
| AACGATTACAGACATGTTAA+GGG | + | chr1.4:17167816-17167835 | MS.gene83049:CDS | 30.0% | |
| AAGGACATTAAAATATGGAG+AGG | + | chr1.4:17167990-17168009 | MS.gene83049:CDS | 30.0% | |
| AATGATAGAAAGGACAAAGA+AGG | + | chr1.4:17169380-17169399 | MS.gene83049:CDS | 30.0% | |
| ACATATCATCCTAGTTATTG+GGG | + | chr1.4:17169536-17169555 | MS.gene83049:intron | 30.0% | |
| ACATATTGTTCTCAACATCA+TGG | - | chr1.4:17167887-17167906 | None:intergenic | 30.0% | |
| AGAAAATCAAATTCTCAAGG+TGG | + | chr1.4:17169464-17169483 | MS.gene83049:CDS | 30.0% | |
| AGAAACAAAGGTTCATCAAA+GGG | + | chr1.4:17167117-17167136 | MS.gene83049:CDS | 30.0% | |
| AGAGAAAACTTAGTGTACTT+TGG | + | chr1.4:17166095-17166114 | MS.gene83049:CDS | 30.0% | |
| AGATATCTACTTTGTCTGTT+GGG | + | chr1.4:17168578-17168597 | MS.gene83049:CDS | 30.0% | |
| AGGTGATATAAGAAAATGGA+TGG | + | chr1.4:17167264-17167283 | MS.gene83049:CDS | 30.0% | |
| CAAGAAGTTGCTAAAAAATG+TGG | + | chr1.4:17167475-17167494 | MS.gene83049:CDS | 30.0% | |
| CAATACTAGATGTATTGTCA+TGG | + | chr1.4:17167632-17167651 | MS.gene83049:CDS | 30.0% | |
| CCTGATATAGAATTGAAAAG+AGG | + | chr1.4:17167397-17167416 | MS.gene83049:CDS | 30.0% | |
| CGTAACTGACAATTAAGATA+GGG | - | chr1.4:17166356-17166375 | None:intergenic | 30.0% | |
| GAAAGAAAAGGTTCATTTGT+CGG | - | chr1.4:17167865-17167884 | None:intergenic | 30.0% | |
| GAGAAAACTTAGTGTACTTT+GGG | + | chr1.4:17166096-17166115 | MS.gene83049:CDS | 30.0% | |
| GAGATTAAGCATCATAAAGA+TGG | + | chr1.4:17165872-17165891 | MS.gene83049:CDS | 30.0% | |
| GATCATGACATGAAGATTAA+TGG | + | chr1.4:17169218-17169237 | MS.gene83049:CDS | 30.0% | |
| GGTGATATAAGAAAATGGAT+GGG | + | chr1.4:17167265-17167284 | MS.gene83049:CDS | 30.0% | |
| GTACTGTCTACACTAAAAAA+TGG | + | chr1.4:17167139-17167158 | MS.gene83049:CDS | 30.0% | |
| TAAAGCAACTAACCTGAAAA+AGG | - | chr1.4:17166276-17166295 | None:intergenic | 30.0% | |
| TAAGGAATGAAGCTAGAAAT+TGG | + | chr1.4:17169426-17169445 | MS.gene83049:CDS | 30.0% | |
| TCAAGTGCTTCTGTTAAATT+CGG | + | chr1.4:17166124-17166143 | MS.gene83049:CDS | 30.0% | |
| TCTGCATTTCAAATCAGATA+TGG | + | chr1.4:17167520-17167539 | MS.gene83049:CDS | 30.0% | |
| TTTGATCTTGAGAAACAACT+TGG | + | chr1.4:17166581-17166600 | MS.gene83049:CDS | 30.0% | |
| ! | AAATTTGAATTTTGTCCCCA+TGG | + | chr1.4:17166613-17166632 | MS.gene83049:CDS | 30.0% |
| ! | AAGTACACTAAGTTTTCTCT+TGG | - | chr1.4:17166095-17166114 | None:intergenic | 30.0% |
| ! | AGGACCACAGAAATATATTT+TGG | - | chr1.4:17166954-17166973 | None:intergenic | 30.0% |
| ! | AGTCTTTAAAAGGAAGCAAA+GGG | + | chr1.4:17167726-17167745 | MS.gene83049:CDS | 30.0% |
| ! | ATCAAATACTGTTTCTCTGA+TGG | + | chr1.4:17167424-17167443 | MS.gene83049:CDS | 30.0% |
| ! | ATCATTTCCTAAGTTTTCCA+TGG | + | chr1.4:17169585-17169604 | MS.gene83049:intron | 30.0% |
| ! | ATGAACTTAATGGAGTACTA+TGG | + | chr1.4:17169299-17169318 | MS.gene83049:CDS | 30.0% |
| ! | ATGCTGTTTGATTGATAAGT+TGG | - | chr1.4:17169107-17169126 | None:intergenic | 30.0% |
| ! | ATGTCCTCTATTTCTTCTAA+GGG | + | chr1.4:17168048-17168067 | MS.gene83049:CDS | 30.0% |
| ! | CCTCTTTTCAATTCTATATC+AGG | - | chr1.4:17167400-17167419 | None:intergenic | 30.0% |
| ! | TATCTGATTTGAAATGCAGA+TGG | - | chr1.4:17167520-17167539 | None:intergenic | 30.0% |
| ! | TATGTCCTCTATTTCTTCTA+AGG | + | chr1.4:17168047-17168066 | MS.gene83049:CDS | 30.0% |
| ! | TCAAAGCTAGGATTTTTGTT+CGG | + | chr1.4:17167932-17167951 | MS.gene83049:CDS | 30.0% |
| ! | TCTAAAGTGGTATATTTGCA+GGG | - | chr1.4:17168441-17168460 | None:intergenic | 30.0% |
| ! | TGTTTTACATGGAGATGTTT+TGG | - | chr1.4:17169053-17169072 | None:intergenic | 30.0% |
| !! | AAGTTGTTTCTCAAGATCAA+AGG | - | chr1.4:17166582-17166601 | None:intergenic | 30.0% |
| !! | ACCACAGAAATATATTTTGG+AGG | - | chr1.4:17166951-17166970 | None:intergenic | 30.0% |
| !! | CCACAGAAATATATTTTGGA+GGG | - | chr1.4:17166950-17166969 | None:intergenic | 30.0% |
| !! | CGATAGTGTTGACAAAAATT+CGG | - | chr1.4:17166536-17166555 | None:intergenic | 30.0% |
| !! | GAAAGTTTAGTTGATGAGTT+AGG | - | chr1.4:17167574-17167593 | None:intergenic | 30.0% |
| !! | TACCAAGTTGATGAACTTAA+TGG | + | chr1.4:17169289-17169308 | MS.gene83049:CDS | 30.0% |
| !! | TATTGCTTTTCCATGAAATC+TGG | - | chr1.4:17169080-17169099 | None:intergenic | 30.0% |
| !! | TTCTAAAGTGGTATATTTGC+AGG | - | chr1.4:17168442-17168461 | None:intergenic | 30.0% |
| !! | TTCTTTTGTTGATGAGAACA+TGG | + | chr1.4:17167039-17167058 | MS.gene83049:CDS | 30.0% |
| AAATCAAATTCTCAAGGTGG+TGG | + | chr1.4:17169467-17169486 | MS.gene83049:CDS | 35.0% | |
| AAGATCAATGTTAGGATGCT+TGG | + | chr1.4:17167960-17167979 | MS.gene83049:CDS | 35.0% | |
| AAGGATCTTTGCTTACAACA+TGG | + | chr1.4:17166036-17166055 | MS.gene83049:CDS | 35.0% | |
| AATGCCCTTAGAAGAAATAG+AGG | - | chr1.4:17168055-17168074 | None:intergenic | 35.0% | |
| ACAACAGAACGATTACTTGA+CGG | - | chr1.4:17167684-17167703 | None:intergenic | 35.0% | |
| ACAGAAGCAGAAATAATCAG+TGG | + | chr1.4:17169329-17169348 | MS.gene83049:CDS | 35.0% | |
| ACTAAACACCTATCTTACAG+TGG | + | chr1.4:17165965-17165984 | MS.gene83049:CDS | 35.0% | |
| AGGAAGCTTATGACAATCAT+TGG | + | chr1.4:17166426-17166445 | MS.gene83049:CDS | 35.0% | |
| ATCTTTGCTTACAACATGGA+TGG | + | chr1.4:17166040-17166059 | MS.gene83049:CDS | 35.0% | |
| ATGTTGTAAGCAAAGATCCT+TGG | - | chr1.4:17166037-17166056 | None:intergenic | 35.0% | |
| CCACAGGTGATATAAGAAAA+TGG | + | chr1.4:17167260-17167279 | MS.gene83049:CDS | 35.0% | |
| CTACAATGAGGGACTAAATA+AGG | + | chr1.4:17169562-17169581 | MS.gene83049:intron | 35.0% | |
| CTCAACATCATGGAAAGAAA+AGG | - | chr1.4:17167877-17167896 | None:intergenic | 35.0% | |
| CTCCATTAAGTTCATCAACT+TGG | - | chr1.4:17169294-17169313 | None:intergenic | 35.0% | |
| CTGAAAAAGGAGAAGTTTCT+TGG | - | chr1.4:17166263-17166282 | None:intergenic | 35.0% | |
| GAACATTTCCACTGTAAGAT+AGG | - | chr1.4:17165976-17165995 | None:intergenic | 35.0% | |
| GAACGATTACAGACATGTTA+AGG | + | chr1.4:17167815-17167834 | MS.gene83049:CDS | 35.0% | |
| GAGAAACAAAGGTTCATCAA+AGG | + | chr1.4:17167116-17167135 | MS.gene83049:CDS | 35.0% | |
| GAGATATCTACTTTGTCTGT+TGG | + | chr1.4:17168577-17168596 | MS.gene83049:CDS | 35.0% | |
| GCATTTCAAATCAGATATGG+TGG | + | chr1.4:17167523-17167542 | MS.gene83049:CDS | 35.0% | |
| GCGTAACTGACAATTAAGAT+AGG | - | chr1.4:17166357-17166376 | None:intergenic | 35.0% | |
| GCTATGACATATCACTACTT+TGG | + | chr1.4:17168841-17168860 | MS.gene83049:intron | 35.0% | |
| TCAAGGATCGAGTCTTTAAA+AGG | + | chr1.4:17167716-17167735 | MS.gene83049:CDS | 35.0% | |
| TCACTTCCTGAACATTCATT+AGG | - | chr1.4:17168549-17168568 | None:intergenic | 35.0% | |
| TGATCATGATGTCACATTAC+AGG | + | chr1.4:17168668-17168687 | MS.gene83049:CDS | 35.0% | |
| TGCTAAAAAATGTGGTTGCA+AGG | + | chr1.4:17167483-17167502 | MS.gene83049:CDS | 35.0% | |
| TGTACCTTCCTTACATCATA+TGG | + | chr1.4:17168173-17168192 | MS.gene83049:CDS | 35.0% | |
| TTAGATGGTGAATGATCCAT+TGG | - | chr1.4:17168636-17168655 | None:intergenic | 35.0% | |
| TTAGTGTCAATTGCTTGCAA+AGG | - | chr1.4:17166716-17166735 | None:intergenic | 35.0% | |
| TTGACAAAAATTCGGAACCT+CGG | - | chr1.4:17166528-17166547 | None:intergenic | 35.0% | |
| TTGCAGTTGAGAATATAGCA+AGG | + | chr1.4:17168313-17168332 | MS.gene83049:intron | 35.0% | |
| TTTCACTCACTACATTGTCA+AGG | + | chr1.4:17168884-17168903 | MS.gene83049:CDS | 35.0% | |
| TTTCTCGTGTCTGAATTTGT+TGG | + | chr1.4:17168819-17168838 | MS.gene83049:intron | 35.0% | |
| ! | ACTGTTTCTCTGATGGAATA+GGG | + | chr1.4:17167431-17167450 | MS.gene83049:CDS | 35.0% |
| ! | AGGTTAGTTGCTTTAGTTTC+AGG | + | chr1.4:17166281-17166300 | MS.gene83049:intron | 35.0% |
| ! | CAAGAAACTTCTCCTTTTTC+AGG | + | chr1.4:17166261-17166280 | MS.gene83049:CDS | 35.0% |
| ! | CCATTTTCTTATATCACCTG+TGG | - | chr1.4:17167263-17167282 | None:intergenic | 35.0% |
| ! | CCCTCCAAAATATATTTCTG+TGG | + | chr1.4:17166947-17166966 | MS.gene83049:CDS | 35.0% |
| ! | GAGTCTTTAAAAGGAAGCAA+AGG | + | chr1.4:17167725-17167744 | MS.gene83049:CDS | 35.0% |
| ! | GATGGTATTGGAATACACTT+TGG | + | chr1.4:17166058-17166077 | MS.gene83049:CDS | 35.0% |
| ! | GGTTAGTTGCTTTAGTTTCA+GGG | + | chr1.4:17166282-17166301 | MS.gene83049:intron | 35.0% |
| ! | TACTGTTTCTCTGATGGAAT+AGG | + | chr1.4:17167430-17167449 | MS.gene83049:CDS | 35.0% |
| ! | TCGCTATCAATCTTCTAAAG+TGG | - | chr1.4:17168454-17168473 | None:intergenic | 35.0% |
| ! | TCTATTTCTTCTAAGGGCAT+TGG | + | chr1.4:17168054-17168073 | MS.gene83049:CDS | 35.0% |
| !! | ATCAGATATGGTGGATACAA+AGG | + | chr1.4:17167532-17167551 | MS.gene83049:CDS | 35.0% |
| !!! | AAATTTTTGGAGCAACATGC+TGG | + | chr1.4:17165827-17165846 | MS.gene83049:CDS | 35.0% |
| !!! | GAGGACATACCATTTTTTCT+TGG | - | chr1.4:17168036-17168055 | None:intergenic | 35.0% |
| !!! | TCAACATGCATGGTTTTAGA+TGG | - | chr1.4:17168651-17168670 | None:intergenic | 35.0% |
| AAGAATCCATGTCTTCATCC+AGG | + | chr1.4:17168123-17168142 | MS.gene83049:CDS | 40.0% | |
| AAGAATTGCAGCTCAAAGCT+AGG | + | chr1.4:17167920-17167939 | MS.gene83049:CDS | 40.0% | |
| ACAGTCCACCATATGATGTA+AGG | - | chr1.4:17168184-17168203 | None:intergenic | 40.0% | |
| ACCTTCCTTACATCATATGG+TGG | + | chr1.4:17168176-17168195 | MS.gene83049:CDS | 40.0% | |
| ACTTGACGGTTAAGAAAGCA+CGG | - | chr1.4:17167670-17167689 | None:intergenic | 40.0% | |
| AGAAACGCGAAGGAAGTTAT+CGG | - | chr1.4:17167023-17167042 | None:intergenic | 40.0% | |
| AGAGGAACCTGACAACAAAT+CGG | - | chr1.4:17167080-17167099 | None:intergenic | 40.0% | |
| ATCATGCAGTGATGTCACTA+AGG | + | chr1.4:17169408-17169427 | MS.gene83049:CDS | 40.0% | |
| ATCATGTCGAGTGCATTGAA+TGG | - | chr1.4:17167787-17167806 | None:intergenic | 40.0% | |
| ATGTGGCAAAATATGCAGCA+AGG | + | chr1.4:17167308-17167327 | MS.gene83049:CDS | 40.0% | |
| ATTGTCCAATGCAGCATGAT+GGG | - | chr1.4:17166472-17166491 | None:intergenic | 40.0% | |
| CATATCACTACTTTGGCTAC+AGG | + | chr1.4:17168848-17168867 | MS.gene83049:intron | 40.0% | |
| CATCAACAAAAGAAACGCGA+AGG | - | chr1.4:17167033-17167052 | None:intergenic | 40.0% | |
| CCACATCCTAATGAATGTTC+AGG | + | chr1.4:17168540-17168559 | MS.gene83049:CDS | 40.0% | |
| CCTGAACATTCATTAGGATG+TGG | - | chr1.4:17168543-17168562 | None:intergenic | 40.0% | |
| CGATTCGAAAGATTCACTTC+AGG | - | chr1.4:17166974-17166993 | None:intergenic | 40.0% | |
| CGGAAAGGAAGATCAATGTT+AGG | + | chr1.4:17167952-17167971 | MS.gene83049:CDS | 40.0% | |
| CTATGATCCTGTTCAATGGT+TGG | + | chr1.4:17166823-17166842 | MS.gene83049:CDS | 40.0% | |
| CTCAAAATCCTTACATCTCC+TGG | - | chr1.4:17168144-17168163 | None:intergenic | 40.0% | |
| CTGACAACAAATCGGATGAA+CGG | - | chr1.4:17167072-17167091 | None:intergenic | 40.0% | |
| CTTATGCTATTGCTTCTGCT+TGG | + | chr1.4:17169504-17169523 | MS.gene83049:CDS | 40.0% | |
| GAACACACCATGGAAAACTT+AGG | - | chr1.4:17169595-17169614 | None:intergenic | 40.0% | |
| GACATCATGATCAACATGCA+TGG | - | chr1.4:17168661-17168680 | None:intergenic | 40.0% | |
| GCTTACAACATGGATGGTAT+TGG | + | chr1.4:17166046-17166065 | MS.gene83049:CDS | 40.0% | |
| GTTGCTATGATCCTGTTCAA+TGG | + | chr1.4:17166819-17166838 | MS.gene83049:CDS | 40.0% | |
| TACATTGTCAAGGACACCTT+AGG | + | chr1.4:17168894-17168913 | MS.gene83049:CDS | 40.0% | |
| TAGGATGCTTGGATGAAACA+AGG | + | chr1.4:17167971-17167990 | MS.gene83049:CDS | 40.0% | |
| TATTGGGGATGCTACAATGA+GGG | + | chr1.4:17169551-17169570 | MS.gene83049:intron | 40.0% | |
| TCAAGAGAAACAGTGAGTGT+TGG | + | chr1.4:17167352-17167371 | MS.gene83049:CDS | 40.0% | |
| TCCACCATATGATGTAAGGA+AGG | - | chr1.4:17168180-17168199 | None:intergenic | 40.0% | |
| TCGCAAGCTCTATACATGAA+GGG | - | chr1.4:17168977-17168996 | None:intergenic | 40.0% | |
| TCTCTACAGCAAGAACAGTT+TGG | - | chr1.4:17165856-17165875 | None:intergenic | 40.0% | |
| TGAACTTCCACAAAATACCG+AGG | + | chr1.4:17166508-17166527 | MS.gene83049:CDS | 40.0% | |
| TGAATGTTCAGGAAGTGACT+TGG | + | chr1.4:17168551-17168570 | MS.gene83049:CDS | 40.0% | |
| TGCTGATAAGGAACCTGAAA+AGG | + | chr1.4:17168944-17168963 | MS.gene83049:CDS | 40.0% | |
| TGCTGTTGCAATAACTCCTA+AGG | - | chr1.4:17168913-17168932 | None:intergenic | 40.0% | |
| TGGATGAAGACATGGATTCT+TGG | - | chr1.4:17168124-17168143 | None:intergenic | 40.0% | |
| TGTCAATTGCTTGCAAAGGA+AGG | - | chr1.4:17166712-17166731 | None:intergenic | 40.0% | |
| TGTTTCTCCAACCATTGAAC+AGG | - | chr1.4:17166833-17166852 | None:intergenic | 40.0% | |
| TTATTGGGGATGCTACAATG+AGG | + | chr1.4:17169550-17169569 | MS.gene83049:intron | 40.0% | |
| TTCGCAAGCTCTATACATGA+AGG | - | chr1.4:17168978-17168997 | None:intergenic | 40.0% | |
| TTGTAGCATCCCCAATAACT+AGG | - | chr1.4:17169548-17169567 | None:intergenic | 40.0% | |
| ! | ACACACTGTGTTTGCTGATA+AGG | + | chr1.4:17168932-17168951 | MS.gene83049:CDS | 40.0% |
| ! | AGAGTATCATGAACACACCA+TGG | - | chr1.4:17169605-17169624 | None:intergenic | 40.0% |
| ! | CTGACATTTTGTCAAAGCCA+AGG | + | chr1.4:17166017-17166036 | MS.gene83049:CDS | 40.0% |
| ! | GCTAGGATTTTTGTTCGGAA+AGG | + | chr1.4:17167937-17167956 | MS.gene83049:CDS | 40.0% |
| ! | TATGGCAAGTTGAATCCTTC+TGG | - | chr1.4:17166647-17166666 | None:intergenic | 40.0% |
| !! | AAGGGCATTGGAGCAAAAAA+AGG | + | chr1.4:17168066-17168085 | MS.gene83049:CDS | 40.0% |
| !! | ACATCTTTTTCGTAGATCCG+AGG | - | chr1.4:17166386-17166405 | None:intergenic | 40.0% |
| !! | CTTGCACATGCTATTTCTCA+AGG | - | chr1.4:17167596-17167615 | None:intergenic | 40.0% |
| !! | CTTGGCTTTGACAAAATGTC+AGG | - | chr1.4:17166019-17166038 | None:intergenic | 40.0% |
| !!! | AGATGTTTTGGTACTTCAGC+CGG | - | chr1.4:17169041-17169060 | None:intergenic | 40.0% |
| !!! | GTGTTGTTTTCCCACAGAAA+GGG | + | chr1.4:17168202-17168221 | MS.gene83049:CDS | 40.0% |
| !!! | TGTGTTGTTTTCCCACAGAA+AGG | + | chr1.4:17168201-17168220 | MS.gene83049:CDS | 40.0% |
| ACATCTCCTGGATGAAGACA+TGG | - | chr1.4:17168132-17168151 | None:intergenic | 45.0% | |
| ACTTTGGCTACAGGATGTAG+AGG | + | chr1.4:17168857-17168876 | MS.gene83049:intron | 45.0% | |
| AGACGTGGACAGAGAAACAA+AGG | + | chr1.4:17167105-17167124 | MS.gene83049:CDS | 45.0% | |
| AGGTTCCTCTTGTATAGACG+TGG | + | chr1.4:17167090-17167109 | MS.gene83049:CDS | 45.0% | |
| ATCGTTCTGTTGTCCACACT+CGG | + | chr1.4:17167691-17167710 | MS.gene83049:CDS | 45.0% | |
| CTCAATTCGCGATATGCTCT+CGG | - | chr1.4:17166218-17166237 | None:intergenic | 45.0% | |
| CTGCTCTTATTCCTCCTCAT+CGG | + | chr1.4:17168604-17168623 | MS.gene83049:CDS | 45.0% | |
| CTTACCTTCTCCCTTTCTGT+GGG | - | chr1.4:17168215-17168234 | None:intergenic | 45.0% | |
| GATGAGGAGGAATAAGAGCA+GGG | - | chr1.4:17168605-17168624 | None:intergenic | 45.0% | |
| GATTGTCCAATGCAGCATGA+TGG | - | chr1.4:17166473-17166492 | None:intergenic | 45.0% | |
| GCAAAATATGCAGCAAGGCT+TGG | + | chr1.4:17167313-17167332 | MS.gene83049:CDS | 45.0% | |
| GTCTTCATCCAGGAGATGTA+AGG | + | chr1.4:17168133-17168152 | MS.gene83049:CDS | 45.0% | |
| TCCTCATCGGGAAAATCCAA+TGG | + | chr1.4:17168617-17168636 | MS.gene83049:CDS | 45.0% | |
| TCTGTCCACGTCTATACAAG+AGG | - | chr1.4:17167098-17167117 | None:intergenic | 45.0% | |
| TCTTACCTTCTCCCTTTCTG+TGG | - | chr1.4:17168216-17168235 | None:intergenic | 45.0% | |
| TGCTCTTATTCCTCCTCATC+GGG | + | chr1.4:17168605-17168624 | MS.gene83049:CDS | 45.0% | |
| TTGTCCAATGCAGCATGATG+GGG | - | chr1.4:17166471-17166490 | None:intergenic | 45.0% | |
| ! | AGGAAGTTATCGGTGTCTTC+AGG | - | chr1.4:17167013-17167032 | None:intergenic | 45.0% |
| ! | ATTGGATTTTCCCGATGAGG+AGG | - | chr1.4:17168618-17168637 | None:intergenic | 45.0% |
| ! | GCCGGATTTTGCGAAATCAA+CGG | - | chr1.4:17169015-17169034 | None:intergenic | 45.0% |
| ! | TCCATTGGATTTTCCCGATG+AGG | - | chr1.4:17168621-17168640 | None:intergenic | 45.0% |
| ! | TGTTCAGGAAGTGACTTGGA+TGG | + | chr1.4:17168555-17168574 | MS.gene83049:CDS | 45.0% |
| ! | TTCGGAACCTCGGTATTTTG+TGG | - | chr1.4:17166518-17166537 | None:intergenic | 45.0% |
| ! | TTTTCCCACAGAAAGGGAGA+AGG | + | chr1.4:17168208-17168227 | MS.gene83049:CDS | 45.0% |
| !! | CGTTCATCCGATTTGTTGTC+AGG | + | chr1.4:17167070-17167089 | MS.gene83049:CDS | 45.0% |
| !! | GCCGTTGATTTCGCAAAATC+CGG | + | chr1.4:17169011-17169030 | MS.gene83049:CDS | 45.0% |
| AATCGGAAAGCTTTACCGCG+AGG | + | chr1.4:17169127-17169146 | MS.gene83049:CDS | 50.0% | |
| AATTGCGCGATAACTCAGCG+TGG | + | chr1.4:17167212-17167231 | MS.gene83049:CDS | 50.0% | |
| CCTTCTGGTGGAATCACCAT+GGG | - | chr1.4:17166632-17166651 | None:intergenic | 50.0% | |
| CGATGAGGAGGAATAAGAGC+AGG | - | chr1.4:17168606-17168625 | None:intergenic | 50.0% | |
| CTTCTGGTGGAATCACCATG+GGG | - | chr1.4:17166631-17166650 | None:intergenic | 50.0% | |
| GCACTCGACATGATGTCACA+AGG | + | chr1.4:17167793-17167812 | MS.gene83049:CDS | 50.0% | |
| GTGCAACATTCTTCACCTCG+CGG | - | chr1.4:17169145-17169164 | None:intergenic | 50.0% | |
| TCCTTCTGGTGGAATCACCA+TGG | - | chr1.4:17166633-17166652 | None:intergenic | 50.0% | |
| TGGATGTTTGCACCGAGAAC+TGG | + | chr1.4:17167232-17167251 | MS.gene83049:CDS | 50.0% | |
| TTCACCCCATCATGCTGCAT+TGG | + | chr1.4:17166464-17166483 | MS.gene83049:CDS | 50.0% | |
| ! | CCTGTGGTTAGTCCAGTTCT+CGG | - | chr1.4:17167247-17167266 | None:intergenic | 50.0% |
| ! | GAAGGGCTCATTGCCTTTTC+AGG | - | chr1.4:17168960-17168979 | None:intergenic | 50.0% |
| ! | GGCAAGTTGAATCCTTCTGG+TGG | - | chr1.4:17166644-17166663 | None:intergenic | 50.0% |
| CCCATGGTGATTCCACCAGA+AGG | + | chr1.4:17166629-17166648 | MS.gene83049:CDS | 55.0% | |
| CCGAGAACTGGACTAACCAC+AGG | + | chr1.4:17167244-17167263 | MS.gene83049:CDS | 55.0% | |
| GTCAGTTACGCAGTGCTCCT+CGG | + | chr1.4:17166366-17166385 | MS.gene83049:intron | 55.0% | |
| TCGATCCTTGACACCGAGTG+TGG | - | chr1.4:17167707-17167726 | None:intergenic | 55.0% | |
| TTTCGCAAAATCCGGCGTGC+CGG | + | chr1.4:17169019-17169038 | MS.gene83049:CDS | 55.0% | |
| !! | GTTGTCCACACTCGGTGTCA+AGG | + | chr1.4:17167699-17167718 | MS.gene83049:CDS | 55.0% |
| TGGTACTTCAGCCGGCACGC+CGG | - | chr1.4:17169033-17169052 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 17165824 | 17169657 | 17165824 | ID=MS.gene83049 |
| chr1.4 | mRNA | 17165824 | 17169657 | 17165824 | ID=MS.gene83049.t1;Parent=MS.gene83049 |
| chr1.4 | exon | 17165824 | 17166282 | 17165824 | ID=MS.gene83049.t1.exon1;Parent=MS.gene83049.t1 |
| chr1.4 | CDS | 17165824 | 17166282 | 17165824 | ID=cds.MS.gene83049.t1;Parent=MS.gene83049.t1 |
| chr1.4 | exon | 17166371 | 17168229 | 17166371 | ID=MS.gene83049.t1.exon2;Parent=MS.gene83049.t1 |
| chr1.4 | CDS | 17166371 | 17168229 | 17166371 | ID=cds.MS.gene83049.t1;Parent=MS.gene83049.t1 |
| chr1.4 | exon | 17168539 | 17168689 | 17168539 | ID=MS.gene83049.t1.exon3;Parent=MS.gene83049.t1 |
| chr1.4 | CDS | 17168539 | 17168689 | 17168539 | ID=cds.MS.gene83049.t1;Parent=MS.gene83049.t1 |
| chr1.4 | exon | 17168870 | 17169548 | 17168870 | ID=MS.gene83049.t1.exon4;Parent=MS.gene83049.t1 |
| chr1.4 | CDS | 17168870 | 17169548 | 17168870 | ID=cds.MS.gene83049.t1;Parent=MS.gene83049.t1 |
| chr1.4 | exon | 17169632 | 17169657 | 17169632 | ID=MS.gene83049.t1.exon5;Parent=MS.gene83049.t1 |
| chr1.4 | CDS | 17169632 | 17169657 | 17169632 | ID=cds.MS.gene83049.t1;Parent=MS.gene83049.t1 |
| Gene Sequence |
| Protein sequence |
