Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83427.t1 | XP_013449504.1 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 1.10E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83427.t1 | Q9LU39 | 25.4 | 244 | 154 | 8 | 41 | 276 | 61 | 284 | 1.7e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83427.t1 | A0A072U1J2 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 7.6e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050315 | MS.gene83427 | 0.826705 | 2.34E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene83427 | 0.801409 | 9.13E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene83427 | 0.835006 | 2.16E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene83427 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene054920 | MS.gene83427 | 0.812247 | 4.67E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene83427 | 0.848342 | 6.51E-60 | -1.69E-46 |
| MS.gene055741 | MS.gene83427 | 0.803336 | 3.66E-49 | -1.69E-46 |
| MS.gene055744 | MS.gene83427 | 0.802193 | 6.30E-49 | -1.69E-46 |
| MS.gene056514 | MS.gene83427 | 0.801809 | 7.56E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene83427 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene058090 | MS.gene83427 | 0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene83427 | 0.839147 | 1.89E-57 | -1.69E-46 |
| MS.gene058948 | MS.gene83427 | 0.818317 | 2.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83427.t1 | MTR_7g085670 | 97.491 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 0.0 | 563 |
| MS.gene83427.t1 | MTR_7g085670 | 97.740 | 177 | 4 | 0 | 3 | 179 | 50 | 226 | 8.87e-126 | 358 |
| MS.gene83427.t1 | MTR_4g007990 | 28.571 | 245 | 149 | 12 | 36 | 268 | 135 | 365 | 1.92e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83427.t1 | AT3G03890 | 76.357 | 258 | 61 | 0 | 20 | 277 | 62 | 319 | 3.59e-148 | 418 |
| MS.gene83427.t1 | AT3G03890 | 75.000 | 244 | 61 | 0 | 20 | 263 | 62 | 305 | 6.54e-138 | 391 |
| MS.gene83427.t1 | AT1G51560 | 27.626 | 257 | 136 | 12 | 36 | 268 | 141 | 371 | 1.10e-17 | 82.4 |
| MS.gene83427.t1 | AT3G21140 | 29.084 | 251 | 140 | 11 | 36 | 268 | 137 | 367 | 1.50e-17 | 82.0 |
Find 66 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACAAATCGTACAACTTT+TGG | 0.244472 | 7.2:+22130420 | None:intergenic |
| TCCTAAATGTTCAGTGCTTT+TGG | 0.253580 | 7.2:-22130866 | MS.gene83427:CDS |
| GGCCATACGAGCTGCATATT+TGG | 0.255255 | 7.2:-22130595 | MS.gene83427:CDS |
| CTTTGCTGACATAATAGATT+TGG | 0.270171 | 7.2:-22129382 | MS.gene83427:CDS |
| CGAGACATCCCAATGCGTTT+TGG | 0.271589 | 7.2:-22130572 | MS.gene83427:CDS |
| GCCAAAAGCACTGAACATTT+AGG | 0.293730 | 7.2:+22130865 | None:intergenic |
| GGTGTTGCCACAGCTTTGTT+AGG | 0.347039 | 7.2:-22130396 | MS.gene83427:CDS |
| CGGTTATCCATCAGGATCTA+TGG | 0.347934 | 7.2:-22131291 | MS.gene83427:CDS |
| ATGAATCAGGTTGTTTCCTC+TGG | 0.356396 | 7.2:-22132399 | MS.gene83427:intron |
| TCAATTAATTCAAGCTCATC+AGG | 0.370693 | 7.2:-22132346 | MS.gene83427:intron |
| GGCTTGGAAAACTGAGCAAT+GGG | 0.383757 | 7.2:+22129675 | None:intergenic |
| GCCACAGCTTTGTTAGGATC+AGG | 0.395641 | 7.2:-22130390 | MS.gene83427:CDS |
| TCCTGAAGATAGGACTGATT+TGG | 0.404816 | 7.2:-22130836 | MS.gene83427:CDS |
| CAACTTGAGGCTTGGCAGCT+TGG | 0.406436 | 7.2:+22128878 | None:intergenic |
| ACAGTTCGAATTTCTTCAAC+TGG | 0.411436 | 7.2:+22131908 | None:intergenic |
| TCTTCGACTTCAGAGTTTAC+CGG | 0.413103 | 7.2:-22129726 | MS.gene83427:intron |
| TCGTCTAGGTTTCAATGTTA+AGG | 0.415391 | 7.2:-22129358 | MS.gene83427:intron |
| AAGTCGCTCACTGCTAATAT+AGG | 0.415949 | 7.2:+22131239 | None:intergenic |
| TGCTGATTTGTACTCATCTC+CGG | 0.430709 | 7.2:+22129707 | None:intergenic |
| TCTTACTTTCTATCTTCTGC+AGG | 0.436757 | 7.2:+22129033 | None:intergenic |
| TGGCTAGAGATCCTGAAGAT+AGG | 0.437357 | 7.2:-22130846 | MS.gene83427:CDS |
| GCAGCACTGGACCTCAGTTC+CGG | 0.448145 | 7.2:-22129502 | MS.gene83427:intron |
| AGGTACCTGAGTAGTGGATT+GGG | 0.448889 | 7.2:+22132605 | None:intergenic |
| TTATATTCAGGTACCTGAAA+AGG | 0.458927 | 7.2:-22130625 | MS.gene83427:intron |
| CTGTACTTTGCAGGACTTAG+CGG | 0.469481 | 7.2:-22130893 | MS.gene83427:intron |
| AAGTATGACGGTTATCCATC+AGG | 0.473161 | 7.2:-22131299 | MS.gene83427:CDS |
| CTCGTAATGAAGGTTGACTT+TGG | 0.474484 | 7.2:-22130468 | MS.gene83427:intron |
| GATTAATACCGCTACTGGCT+TGG | 0.477699 | 7.2:+22129659 | None:intergenic |
| AAAGTTACCCAAAACGCATT+GGG | 0.484421 | 7.2:+22130564 | None:intergenic |
| TTTCTATCTTCTGCAGGTCG+AGG | 0.484803 | 7.2:+22129039 | None:intergenic |
| GAGGTACCTGAGTAGTGGAT+TGG | 0.486138 | 7.2:+22132604 | None:intergenic |
| CGCCAAATATGCAGCTCGTA+TGG | 0.487531 | 7.2:+22130593 | None:intergenic |
| TTAGAGATTAATACCGCTAC+TGG | 0.492574 | 7.2:+22129654 | None:intergenic |
| CTAAAGCGATTGTGCAGCAC+TGG | 0.493445 | 7.2:-22129515 | MS.gene83427:CDS |
| TTGGTTCAATGCGTACAAAT+CGG | 0.494738 | 7.2:+22130439 | None:intergenic |
| CGACTTGGCAGTTCATTCAA+AGG | 0.496656 | 7.2:-22131222 | MS.gene83427:intron |
| TTCTATCTTCTGCAGGTCGA+GGG | 0.497692 | 7.2:+22129040 | None:intergenic |
| GACTTTGCATGTGATGCAAA+TGG | 0.502893 | 7.2:-22131266 | MS.gene83427:CDS |
| ACCAAATCAGTCCTATCTTC+AGG | 0.507307 | 7.2:+22130835 | None:intergenic |
| AAAAGTTACCCAAAACGCAT+TGG | 0.512742 | 7.2:+22130563 | None:intergenic |
| AAAGTTGTACGATTTGTGTC+AGG | 0.512754 | 7.2:-22130417 | MS.gene83427:CDS |
| AACAGAAACCTTCGAGAATG+TGG | 0.529578 | 7.2:+22131856 | None:intergenic |
| GTATCAATCAACTTGAGGCT+TGG | 0.543974 | 7.2:+22128870 | None:intergenic |
| TCTTCTGCAGGTCGAGGGAA+AGG | 0.546658 | 7.2:+22129045 | None:intergenic |
| TAGATGTATCAATCAACTTG+AGG | 0.555292 | 7.2:+22128865 | None:intergenic |
| ATAATAGATTTGGATCGTCT+AGG | 0.558053 | 7.2:-22129372 | MS.gene83427:CDS |
| GGTACCTGAAAAGGATAAAG+AGG | 0.559008 | 7.2:-22130616 | MS.gene83427:CDS |
| TGGCTTGGAAAACTGAGCAA+TGG | 0.563411 | 7.2:+22129674 | None:intergenic |
| TTCTTCCCAATCCACTACTC+AGG | 0.566362 | 7.2:-22132610 | MS.gene83427:intron |
| GTTCGAATTTCTTCAACTGG+TGG | 0.572856 | 7.2:+22131911 | None:intergenic |
| GACGCTCTCCACATTCTCGA+AGG | 0.577675 | 7.2:-22131864 | MS.gene83427:intron |
| TCCCACGTAGACTACGATCA+AGG | 0.587187 | 7.2:+22131885 | None:intergenic |
| AAATAGAGGTACCTGAGTAG+TGG | 0.589705 | 7.2:+22132599 | None:intergenic |
| CAGGTCGAGGGAAAGGCACA+CGG | 0.592459 | 7.2:+22129052 | None:intergenic |
| TATATTAGCAGTGAGCGACT+TGG | 0.593728 | 7.2:-22131237 | MS.gene83427:CDS |
| AAGTCAACCATAGATCCTGA+TGG | 0.598237 | 7.2:+22131284 | None:intergenic |
| ACAGCTTTGTTAGGATCAGG+AGG | 0.602593 | 7.2:-22130387 | MS.gene83427:intron |
| GTCCTTGATCGTAGTCTACG+TGG | 0.607414 | 7.2:-22131887 | MS.gene83427:CDS |
| TTTGACACGCAGAAGTATGA+CGG | 0.611261 | 7.2:-22131311 | MS.gene83427:intron |
| TCCTTGATCGTAGTCTACGT+GGG | 0.641535 | 7.2:-22131886 | MS.gene83427:CDS |
| AAGGGGACATACCGGAACTG+AGG | 0.652484 | 7.2:+22129491 | None:intergenic |
| TCCTGATCCTAACAAAGCTG+TGG | 0.652822 | 7.2:+22130389 | None:intergenic |
| TCGCACATGAACAAAGATCA+CGG | 0.675086 | 7.2:-22129546 | MS.gene83427:CDS |
| GATTTGGTGATCACTATCCA+CGG | 0.676849 | 7.2:-22130820 | MS.gene83427:CDS |
| GCTTGGAAAACTGAGCAATG+GGG | 0.731088 | 7.2:+22129676 | None:intergenic |
| TTACAAAGATAGCGTCACCG+TGG | 0.762471 | 7.2:+22130803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAACTGTAAATTATTA+TGG | - | chr7.2:22129782-22129801 | MS.gene83427:intron | 10.0% |
| !! | ATTTGATAAATAATAGTAAA+AGG | + | chr7.2:22130777-22130796 | None:intergenic | 10.0% |
| !! | CTATTGAATAATAATTAATT+GGG | - | chr7.2:22128956-22128975 | MS.gene83427:intron | 10.0% |
| !! | TATATTAAAAGAGAAAATTT+GGG | + | chr7.2:22131910-22131929 | None:intergenic | 10.0% |
| !! | TTATATTAAAAGAGAAAATT+TGG | + | chr7.2:22131911-22131930 | None:intergenic | 10.0% |
| !! | AAGAAATAATGTATAACTAA+TGG | + | chr7.2:22130739-22130758 | None:intergenic | 15.0% |
| !! | AATATTATCATGTAAACATA+GGG | - | chr7.2:22131254-22131273 | MS.gene83427:CDS | 15.0% |
| !! | ACTATTATTTATCAAATGAT+TGG | - | chr7.2:22130780-22130799 | MS.gene83427:intron | 15.0% |
| !! | CCAATTAATTATTATTCAAT+AGG | + | chr7.2:22128958-22128977 | None:intergenic | 15.0% |
| !! | CCTATTGAATAATAATTAAT+TGG | - | chr7.2:22128955-22128974 | MS.gene83427:intron | 15.0% |
| !! | TGCATAAAAAAGAATATATA+AGG | - | chr7.2:22131570-22131589 | MS.gene83427:intron | 15.0% |
| !!! | TATTTATTGCTTTTCTTTTA+GGG | - | chr7.2:22132565-22132584 | MS.gene83427:intron | 15.0% |
| !!! | TGAAATTTTGTTTTAGTAAT+TGG | - | chr7.2:22130120-22130139 | MS.gene83427:intron | 15.0% |
| !!! | TTTTAGTTAAGTTTTGATTT+TGG | + | chr7.2:22131405-22131424 | None:intergenic | 15.0% |
| !!! | TTTTTAACAATAAACTTTGA+GGG | + | chr7.2:22130327-22130346 | None:intergenic | 15.0% |
| !!! | TTTTTTAACAATAAACTTTG+AGG | + | chr7.2:22130328-22130347 | None:intergenic | 15.0% |
| !! | AAAAAAAAACAGCATATTGT+AGG | + | chr7.2:22132517-22132536 | None:intergenic | 20.0% |
| !! | AATAGGTTCAAAGAAAAAAA+GGG | + | chr7.2:22128941-22128960 | None:intergenic | 20.0% |
| !! | AATTGAATGTGTATAATTTC+AGG | - | chr7.2:22129507-22129526 | MS.gene83427:CDS | 20.0% |
| !! | AATTTGTGAACTTGTATAAA+TGG | - | chr7.2:22130404-22130423 | MS.gene83427:CDS | 20.0% |
| !! | ATAATAGAATCATTATACGA+AGG | - | chr7.2:22130819-22130838 | MS.gene83427:CDS | 20.0% |
| !! | ATACACATGAAATTAACTTA+TGG | + | chr7.2:22131701-22131720 | None:intergenic | 20.0% |
| !! | CAATATTATCATGTAAACAT+AGG | - | chr7.2:22131253-22131272 | MS.gene83427:CDS | 20.0% |
| !! | TAATAGAATCATTATACGAA+GGG | - | chr7.2:22130820-22130839 | MS.gene83427:CDS | 20.0% |
| !! | TAATTAATTAATGTGATTCG+TGG | - | chr7.2:22129069-22129088 | MS.gene83427:CDS | 20.0% |
| !! | TTTAAAAATCACCTACAAAT+TGG | - | chr7.2:22132250-22132269 | MS.gene83427:intron | 20.0% |
| !!! | AAGATTGATTTATGTTAATG+GGG | - | chr7.2:22129530-22129549 | MS.gene83427:CDS | 20.0% |
| !!! | ATAATCATTTTTTTTTAGGC+TGG | - | chr7.2:22132395-22132414 | MS.gene83427:intron | 20.0% |
| !!! | ATTTTATTCCACTCATAAAA+AGG | + | chr7.2:22131232-22131251 | None:intergenic | 20.0% |
| !!! | CTATTTATTGCTTTTCTTTT+AGG | - | chr7.2:22132564-22132583 | MS.gene83427:intron | 20.0% |
| !!! | GAAGATTGATTTATGTTAAT+GGG | - | chr7.2:22129529-22129548 | MS.gene83427:CDS | 20.0% |
| !!! | TTTTATTCCACTCATAAAAA+GGG | + | chr7.2:22131231-22131250 | None:intergenic | 20.0% |
| ! | AAATAAAAGACAAGATGAGA+AGG | + | chr7.2:22130164-22130183 | None:intergenic | 25.0% |
| ! | AAATATCTTTCCATTACTTC+AGG | - | chr7.2:22131652-22131671 | MS.gene83427:intron | 25.0% |
| ! | AATAGAATCATTATACGAAG+GGG | - | chr7.2:22130821-22130840 | MS.gene83427:CDS | 25.0% |
| ! | ACTTCTACAAAAATCAATGA+AGG | + | chr7.2:22129304-22129323 | None:intergenic | 25.0% |
| ! | ATAGTCCTGAAATTATATTC+AGG | - | chr7.2:22130857-22130876 | MS.gene83427:CDS | 25.0% |
| ! | ATGTAAACTTCACATAAGAT+GGG | + | chr7.2:22129713-22129732 | None:intergenic | 25.0% |
| ! | ATTAAAAGAGAAAATTTGGG+TGG | + | chr7.2:22131907-22131926 | None:intergenic | 25.0% |
| ! | ATTAACTTATGGTTCATAGA+TGG | + | chr7.2:22131690-22131709 | None:intergenic | 25.0% |
| ! | ATTATAACTGTTAAGATGAC+CGG | + | chr7.2:22130515-22130534 | None:intergenic | 25.0% |
| ! | CAATAGGTTCAAAGAAAAAA+AGG | + | chr7.2:22128942-22128961 | None:intergenic | 25.0% |
| ! | CAGTGAAGATTTCAATTTAA+TGG | + | chr7.2:22130075-22130094 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAATTTGT+AGG | + | chr7.2:22132264-22132283 | None:intergenic | 25.0% |
| ! | GTATATAGTATGATCAAGAA+AGG | - | chr7.2:22132038-22132057 | MS.gene83427:intron | 25.0% |
| ! | TAAGTAAAAATACTGCCTAA+AGG | + | chr7.2:22132218-22132237 | None:intergenic | 25.0% |
| ! | TCATACTATATACTGTACAA+CGG | + | chr7.2:22132031-22132050 | None:intergenic | 25.0% |
| !! | AAGATTAGATTTGACTTCAT+CGG | - | chr7.2:22130368-22130387 | MS.gene83427:intron | 25.0% |
| !! | GGAAGATTGATTTATGTTAA+TGG | - | chr7.2:22129528-22129547 | MS.gene83427:CDS | 25.0% |
| !! | TTTAGTTGTTGTTGTTCATA+GGG | + | chr7.2:22130003-22130022 | None:intergenic | 25.0% |
| !! | TTTTCAGAAAAGTTCATGTT+AGG | + | chr7.2:22131361-22131380 | None:intergenic | 25.0% |
| !!! | GCAATCTTTTAATTTGTTTG+TGG | + | chr7.2:22130558-22130577 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAACATCACCAG+AGG | + | chr7.2:22129114-22129133 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGTTGTTGTTCAT+AGG | + | chr7.2:22130004-22130023 | None:intergenic | 25.0% |
| AAAAATACTGCCTAAAGGTA+TGG | + | chr7.2:22132213-22132232 | None:intergenic | 30.0% | |
| AAATGAACTACTCGTAATGA+AGG | - | chr7.2:22131016-22131035 | MS.gene83427:intron | 30.0% | |
| AAGGGAAATGTTTCATACTA+TGG | + | chr7.2:22131213-22131232 | None:intergenic | 30.0% | |
| AGAAAAGTTCATGTTAGGAA+AGG | + | chr7.2:22131356-22131375 | None:intergenic | 30.0% | |
| AGCTATACAAATCAGTGTAA+GGG | + | chr7.2:22129671-22129690 | None:intergenic | 30.0% | |
| AGGTACCTGAATATAATTTC+AGG | + | chr7.2:22130865-22130884 | None:intergenic | 30.0% | |
| AGTTTATTTGCCATACCTTT+AGG | - | chr7.2:22132200-22132219 | MS.gene83427:intron | 30.0% | |
| ATAATAGATTTGGATCGTCT+AGG | - | chr7.2:22132122-22132141 | MS.gene83427:intron | 30.0% | |
| ATCAAGAAATCAACAGCTTT+AGG | + | chr7.2:22131447-22131466 | None:intergenic | 30.0% | |
| CATACTATATACTGTACAAC+GGG | + | chr7.2:22132030-22132049 | None:intergenic | 30.0% | |
| CATGTAAACTTCACATAAGA+TGG | + | chr7.2:22129714-22129733 | None:intergenic | 30.0% | |
| CTAAATTGACAGAAGCTAAT+GGG | + | chr7.2:22129343-22129362 | None:intergenic | 30.0% | |
| CTTTGAACATTACAAATGCT+GGG | - | chr7.2:22129877-22129896 | MS.gene83427:intron | 30.0% | |
| CTTTGCTGACATAATAGATT+TGG | - | chr7.2:22132112-22132131 | MS.gene83427:intron | 30.0% | |
| TCAAGAAATCAACAGCTTTA+GGG | + | chr7.2:22131446-22131465 | None:intergenic | 30.0% | |
| TCAATTAATTCAAGCTCATC+AGG | - | chr7.2:22129148-22129167 | MS.gene83427:intron | 30.0% | |
| TCTTTGAACATTACAAATGC+TGG | - | chr7.2:22129876-22129895 | MS.gene83427:intron | 30.0% | |
| TGTAAACTTCACATAAGATG+GGG | + | chr7.2:22129712-22129731 | None:intergenic | 30.0% | |
| TTATAACTGTTAAGATGACC+GGG | + | chr7.2:22130514-22130533 | None:intergenic | 30.0% | |
| TTATATTCAGGTACCTGAAA+AGG | - | chr7.2:22130869-22130888 | MS.gene83427:CDS | 30.0% | |
| TTATGTTAATGGGGTTATTG+TGG | - | chr7.2:22129539-22129558 | MS.gene83427:CDS | 30.0% | |
| ! | AACATTTCCCTTTTTATGAG+TGG | - | chr7.2:22131221-22131240 | MS.gene83427:intron | 30.0% |
| ! | CAATTTTAAACTACCAGCAA+GGG | + | chr7.2:22129492-22129511 | None:intergenic | 30.0% |
| ! | CATTATAGTTGATACCTTGA+AGG | - | chr7.2:22131284-22131303 | MS.gene83427:CDS | 30.0% |
| ! | TATTGTTTTCTGTACTTTGC+AGG | - | chr7.2:22130592-22130611 | MS.gene83427:CDS | 30.0% |
| ! | TCAATTTTAAACTACCAGCA+AGG | + | chr7.2:22129493-22129512 | None:intergenic | 30.0% |
| ! | TGTAAATTATTATGGTGCCA+TGG | - | chr7.2:22129790-22129809 | MS.gene83427:intron | 30.0% |
| !! | GTTAATTTGCTGTTAATGCT+GGG | - | chr7.2:22131155-22131174 | MS.gene83427:intron | 30.0% |
| !! | TGAAAACTGTACTTGTTATC+TGG | - | chr7.2:22131534-22131553 | MS.gene83427:intron | 30.0% |
| !!! | TGGGGATATTGAAGTTTTTT+TGG | - | chr7.2:22129921-22129940 | MS.gene83427:intron | 30.0% |
| !!! | TTTTTTTAGGCTGGTTATCA+GGG | - | chr7.2:22132404-22132423 | MS.gene83427:intron | 30.0% |
| !!! | TTTTTTTTAGGCTGGTTATC+AGG | - | chr7.2:22132403-22132422 | MS.gene83427:intron | 30.0% |
| AAAAGTTACCCAAAACGCAT+TGG | + | chr7.2:22130934-22130953 | None:intergenic | 35.0% | |
| AAAGTTACCCAAAACGCATT+GGG | + | chr7.2:22130933-22130952 | None:intergenic | 35.0% | |
| AAAGTTGTACGATTTGTGTC+AGG | - | chr7.2:22131077-22131096 | MS.gene83427:intron | 35.0% | |
| AATATGGCTGTTAACTTTCC+TGG | - | chr7.2:22129817-22129836 | MS.gene83427:intron | 35.0% | |
| ACAGTTCGAATTTCTTCAAC+TGG | + | chr7.2:22129589-22129608 | None:intergenic | 35.0% | |
| AGAGAAGAGTGAAGAAATAG+AGG | + | chr7.2:22128912-22128931 | None:intergenic | 35.0% | |
| ATACAAATCAGTGTAAGGGT+AGG | + | chr7.2:22129667-22129686 | None:intergenic | 35.0% | |
| ATTAACCAACAAGAGTAGTG+AGG | + | chr7.2:22131141-22131160 | None:intergenic | 35.0% | |
| CAGAGAGGTGAATTACAAAA+TGG | + | chr7.2:22129183-22129202 | None:intergenic | 35.0% | |
| CAGCTATACAAATCAGTGTA+AGG | + | chr7.2:22129672-22129691 | None:intergenic | 35.0% | |
| CATGCAGTATATGATCAGAA+AGG | + | chr7.2:22130102-22130121 | None:intergenic | 35.0% | |
| CCTAAATTGACAGAAGCTAA+TGG | + | chr7.2:22129344-22129363 | None:intergenic | 35.0% | |
| TAAAAGACAAGATGAGAAGG+AGG | + | chr7.2:22130161-22130180 | None:intergenic | 35.0% | |
| TCGTCTAGGTTTCAATGTTA+AGG | - | chr7.2:22132136-22132155 | MS.gene83427:intron | 35.0% | |
| TCTTACTTTCTATCTTCTGC+AGG | + | chr7.2:22132464-22132483 | None:intergenic | 35.0% | |
| TGATTCGTGGTTTATGAATC+AGG | - | chr7.2:22129082-22129101 | MS.gene83427:CDS | 35.0% | |
| TGGGATTGATCAAATAAGAG+AGG | - | chr7.2:22129896-22129915 | MS.gene83427:intron | 35.0% | |
| TGTTAATGCTGGGATATGTT+TGG | - | chr7.2:22131165-22131184 | MS.gene83427:intron | 35.0% | |
| TTAGAGATTAATACCGCTAC+TGG | + | chr7.2:22131843-22131862 | None:intergenic | 35.0% | |
| TTCACATAAGATGGGGAAAA+AGG | + | chr7.2:22129705-22129724 | None:intergenic | 35.0% | |
| TTGATCAAATAAGAGAGGCA+TGG | - | chr7.2:22129901-22129920 | MS.gene83427:intron | 35.0% | |
| TTGGTTCAATGCGTACAAAT+CGG | + | chr7.2:22131058-22131077 | None:intergenic | 35.0% | |
| ! | AAAACAAACTCTAGCCTTCA+AGG | + | chr7.2:22131301-22131320 | None:intergenic | 35.0% |
| ! | CATTTTGTAATTCACCTCTC+TGG | - | chr7.2:22129181-22129200 | MS.gene83427:intron | 35.0% |
| ! | CCATTAGCTTCTGTCAATTT+AGG | - | chr7.2:22129341-22129360 | MS.gene83427:intron | 35.0% |
| ! | GACACAAATCGTACAACTTT+TGG | + | chr7.2:22131077-22131096 | None:intergenic | 35.0% |
| ! | GATTTGACTTCATCGGAAAT+AGG | - | chr7.2:22130375-22130394 | MS.gene83427:intron | 35.0% |
| ! | TCCTAAATGTTCAGTGCTTT+TGG | - | chr7.2:22130628-22130647 | MS.gene83427:intron | 35.0% |
| ! | TGATCAAATAAGAGAGGCAT+GGG | - | chr7.2:22129902-22129921 | MS.gene83427:intron | 35.0% |
| ! | TTGTTGTTGTTCATAGGGAA+GGG | + | chr7.2:22129998-22130017 | None:intergenic | 35.0% |
| !! | AAATTATTATGGTGCCATGG+TGG | - | chr7.2:22129793-22129812 | MS.gene83427:intron | 35.0% |
| !! | ACTTATCTAGAAGCACTTCT+GGG | - | chr7.2:22129208-22129227 | MS.gene83427:intron | 35.0% |
| !! | GGTTAATTTGCTGTTAATGC+TGG | - | chr7.2:22131154-22131173 | MS.gene83427:intron | 35.0% |
| !! | TATTGACTTAGGCTTGTCAA+AGG | - | chr7.2:22130442-22130461 | MS.gene83427:CDS | 35.0% |
| AACAGAAACCTTCGAGAATG+TGG | + | chr7.2:22129641-22129660 | None:intergenic | 40.0% | |
| AAGTATGACGGTTATCCATC+AGG | - | chr7.2:22130195-22130214 | MS.gene83427:intron | 40.0% | |
| AAGTCAACCATAGATCCTGA+TGG | + | chr7.2:22130213-22130232 | None:intergenic | 40.0% | |
| AAGTCGCTCACTGCTAATAT+AGG | + | chr7.2:22130258-22130277 | None:intergenic | 40.0% | |
| AATGCTGGGATATGTTTGGA+AGG | - | chr7.2:22131169-22131188 | MS.gene83427:intron | 40.0% | |
| ACCAAATCAGTCCTATCTTC+AGG | + | chr7.2:22130662-22130681 | None:intergenic | 40.0% | |
| ATATACTGTACAACGGGCAA+GGG | + | chr7.2:22132024-22132043 | None:intergenic | 40.0% | |
| ATGCTGGGATATGTTTGGAA+GGG | - | chr7.2:22131170-22131189 | MS.gene83427:intron | 40.0% | |
| CCTAAGTCAATACTGTGTGA+TGG | + | chr7.2:22130434-22130453 | None:intergenic | 40.0% | |
| CTTGCTCATTCCTGAAGTAA+TGG | + | chr7.2:22131665-22131684 | None:intergenic | 40.0% | |
| GACTTTGCATGTGATGCAAA+TGG | - | chr7.2:22130228-22130247 | MS.gene83427:intron | 40.0% | |
| GGTACCTGAAAAGGATAAAG+AGG | - | chr7.2:22130878-22130897 | MS.gene83427:CDS | 40.0% | |
| GTTAACCTCACTACTCTTGT+TGG | - | chr7.2:22131133-22131152 | MS.gene83427:intron | 40.0% | |
| GTTCGAATTTCTTCAACTGG+TGG | + | chr7.2:22129586-22129605 | None:intergenic | 40.0% | |
| TAGAAGCTAAAATCCCTTGC+TGG | - | chr7.2:22129476-22129495 | MS.gene83427:intron | 40.0% | |
| TATATACTGTACAACGGGCA+AGG | + | chr7.2:22132025-22132044 | None:intergenic | 40.0% | |
| TATATTAGCAGTGAGCGACT+TGG | - | chr7.2:22130257-22130276 | MS.gene83427:intron | 40.0% | |
| TCCTGAAGATAGGACTGATT+TGG | - | chr7.2:22130658-22130677 | MS.gene83427:intron | 40.0% | |
| TCGCACATGAACAAAGATCA+CGG | - | chr7.2:22131948-22131967 | MS.gene83427:intron | 40.0% | |
| TCTTCGACTTCAGAGTTTAC+CGG | - | chr7.2:22131768-22131787 | MS.gene83427:intron | 40.0% | |
| TGACTGAATTGATCATCTGC+AGG | - | chr7.2:22132085-22132104 | MS.gene83427:intron | 40.0% | |
| ! | AGTCAATACTGTGTGATGGA+TGG | + | chr7.2:22130430-22130449 | None:intergenic | 40.0% |
| ! | ATGAATCAGGTTGTTTCCTC+TGG | - | chr7.2:22129095-22129114 | MS.gene83427:intron | 40.0% |
| ! | ATGGCCTCTTTATCCTTTTC+AGG | + | chr7.2:22130885-22130904 | None:intergenic | 40.0% |
| ! | CTCGTAATGAAGGTTGACTT+TGG | - | chr7.2:22131026-22131045 | MS.gene83427:intron | 40.0% |
| ! | GATCAAATAAGAGAGGCATG+GGG | - | chr7.2:22129903-22129922 | MS.gene83427:intron | 40.0% |
| ! | GTTGTTGTTGTTCATAGGGA+AGG | + | chr7.2:22129999-22130018 | None:intergenic | 40.0% |
| ! | TGACTTTTGTTCATACCCCA+AGG | - | chr7.2:22129961-22129980 | MS.gene83427:intron | 40.0% |
| ! | TTTGACACGCAGAAGTATGA+CGG | - | chr7.2:22130183-22130202 | MS.gene83427:intron | 40.0% |
| !! | AAATAGAGGTACCTGAGTAG+TGG | + | chr7.2:22128898-22128917 | None:intergenic | 40.0% |
| !! | AAGGGTGTTTACAGTTCCTT+GGG | + | chr7.2:22129980-22129999 | None:intergenic | 40.0% |
| !! | AGCTGTTGATTTCTTGATGC+TGG | - | chr7.2:22131449-22131468 | MS.gene83427:intron | 40.0% |
| !! | CACTTATCTAGAAGCACTTC+TGG | - | chr7.2:22129207-22129226 | MS.gene83427:intron | 40.0% |
| !! | CCATCACACAGTATTGACTT+AGG | - | chr7.2:22130431-22130450 | MS.gene83427:CDS | 40.0% |
| !! | GATTTGGTGATCACTATCCA+CGG | - | chr7.2:22130674-22130693 | MS.gene83427:intron | 40.0% |
| !! | GCCAAAAGCACTGAACATTT+AGG | + | chr7.2:22130632-22130651 | None:intergenic | 40.0% |
| !! | TGCTGATTTGTACTCATCTC+CGG | + | chr7.2:22131790-22131809 | None:intergenic | 40.0% |
| !!! | GAAGGCTAGAGTTTGTTTTG+CGG | - | chr7.2:22131302-22131321 | MS.gene83427:CDS | 40.0% |
| CGGTTATCCATCAGGATCTA+TGG | - | chr7.2:22130203-22130222 | MS.gene83427:intron | 45.0% | |
| CTAGATAAGTGCTTCCAGAG+AGG | + | chr7.2:22129198-22129217 | None:intergenic | 45.0% | |
| CTGAATTGATCATCTGCAGG+TGG | - | chr7.2:22132088-22132107 | MS.gene83427:intron | 45.0% | |
| CTGTACTTTGCAGGACTTAG+CGG | - | chr7.2:22130601-22130620 | MS.gene83427:CDS | 45.0% | |
| GCTTGGAAAACTGAGCAATG+GGG | + | chr7.2:22131821-22131840 | None:intergenic | 45.0% | |
| GGCTTGGAAAACTGAGCAAT+GGG | + | chr7.2:22131822-22131841 | None:intergenic | 45.0% | |
| GTTAATGGGGTTATTGTGGC+AGG | - | chr7.2:22129543-22129562 | MS.gene83427:CDS | 45.0% | |
| TAACAGCCATATTGCCACCA+TGG | + | chr7.2:22129810-22129829 | None:intergenic | 45.0% | |
| TATACTGTACAACGGGCAAG+GGG | + | chr7.2:22132023-22132042 | None:intergenic | 45.0% | |
| TCCTGATCCTAACAAAGCTG+TGG | + | chr7.2:22131108-22131127 | None:intergenic | 45.0% | |
| TCCTTGATCGTAGTCTACGT+GGG | - | chr7.2:22129608-22129627 | MS.gene83427:intron | 45.0% | |
| TGGCTAGAGATCCTGAAGAT+AGG | - | chr7.2:22130648-22130667 | MS.gene83427:intron | 45.0% | |
| TTACAAAGATAGCGTCACCG+TGG | + | chr7.2:22130694-22130713 | None:intergenic | 45.0% | |
| TTCTATCTTCTGCAGGTCGA+GGG | + | chr7.2:22132457-22132476 | None:intergenic | 45.0% | |
| TTCTTCCCAATCCACTACTC+AGG | - | chr7.2:22128884-22128903 | MS.gene83427:CDS | 45.0% | |
| TTGATTTCTTGATGCTGGCG+TGG | - | chr7.2:22131454-22131473 | MS.gene83427:intron | 45.0% | |
| TTTCTATCTTCTGCAGGTCG+AGG | + | chr7.2:22132458-22132477 | None:intergenic | 45.0% | |
| ! | AGGGTGTTTACAGTTCCTTG+GGG | + | chr7.2:22129979-22129998 | None:intergenic | 45.0% |
| ! | CGACTTGGCAGTTCATTCAA+AGG | - | chr7.2:22130272-22130291 | MS.gene83427:intron | 45.0% |
| ! | GAGACATCCCAATGCGTTTT+GGG | - | chr7.2:22130923-22130942 | MS.gene83427:intron | 45.0% |
| ! | GATTAATACCGCTACTGGCT+TGG | + | chr7.2:22131838-22131857 | None:intergenic | 45.0% |
| ! | TCAGTTTTCCAAGCCAGTAG+CGG | - | chr7.2:22131827-22131846 | MS.gene83427:intron | 45.0% |
| ! | TGGCTTGGAAAACTGAGCAA+TGG | + | chr7.2:22131823-22131842 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTAGGATCAGG+AGG | - | chr7.2:22131107-22131126 | MS.gene83427:intron | 45.0% |
| !! | AGGTACCTGAGTAGTGGATT+GGG | + | chr7.2:22128892-22128911 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTTACAGTTCCT+TGG | + | chr7.2:22129981-22130000 | None:intergenic | 45.0% |
| !!! | TAAAATAATCATTTTTTTTT+AGG | - | chr7.2:22132391-22132410 | MS.gene83427:CDS | 5.0% |
| !!! | TCAATTAAAATATTTTTTAT+TGG | - | chr7.2:22131620-22131639 | MS.gene83427:intron | 5.0% |
| AGTGAAAGCTACTCCAGACC+AGG | + | chr7.2:22129838-22129857 | None:intergenic | 50.0% | |
| CGCCAAATATGCAGCTCGTA+TGG | + | chr7.2:22130904-22130923 | None:intergenic | 50.0% | |
| CTAAAGCGATTGTGCAGCAC+TGG | - | chr7.2:22131979-22131998 | MS.gene83427:intron | 50.0% | |
| CTGTGTGGATGCTGTAAAGC+AGG | - | chr7.2:22131325-22131344 | MS.gene83427:intron | 50.0% | |
| GGCCATACGAGCTGCATATT+TGG | - | chr7.2:22130899-22130918 | MS.gene83427:intron | 50.0% | |
| GGCTGTTAACTTTCCTGGTC+TGG | - | chr7.2:22129822-22129841 | MS.gene83427:intron | 50.0% | |
| GTCCTTGATCGTAGTCTACG+TGG | - | chr7.2:22129607-22129626 | MS.gene83427:intron | 50.0% | |
| TCATGTCTTCAACCTGCTCC+CGG | - | chr7.2:22130493-22130512 | MS.gene83427:intron | 50.0% | |
| TCCCACGTAGACTACGATCA+AGG | + | chr7.2:22129612-22129631 | None:intergenic | 50.0% | |
| ! | CGAGACATCCCAATGCGTTT+TGG | - | chr7.2:22130922-22130941 | MS.gene83427:intron | 50.0% |
| ! | GGTCTGGAGTAGCTTTCACT+AGG | - | chr7.2:22129838-22129857 | MS.gene83427:intron | 50.0% |
| !! | ATGGTGCCATGGTGGCAATA+TGG | - | chr7.2:22129801-22129820 | MS.gene83427:intron | 50.0% |
| !! | GAGGTACCTGAGTAGTGGAT+TGG | + | chr7.2:22128893-22128912 | None:intergenic | 50.0% |
| !! | GCCACAGCTTTGTTAGGATC+AGG | - | chr7.2:22131104-22131123 | MS.gene83427:intron | 50.0% |
| !! | GGTGTTGCCACAGCTTTGTT+AGG | - | chr7.2:22131098-22131117 | MS.gene83427:intron | 50.0% |
| !!! | GAGTTTGTTTTGCGGCTGTG+TGG | - | chr7.2:22131310-22131329 | MS.gene83427:intron | 50.0% |
| AAGGGGACATACCGGAACTG+AGG | + | chr7.2:22132006-22132025 | None:intergenic | 55.0% | |
| CAACTTGAGGCTTGGCAGCT+TGG | + | chr7.2:22132619-22132638 | None:intergenic | 55.0% | |
| CTGTTAAGATGACCGGGAGC+AGG | + | chr7.2:22130508-22130527 | None:intergenic | 55.0% | |
| GACGCTCTCCACATTCTCGA+AGG | - | chr7.2:22129630-22129649 | MS.gene83427:intron | 55.0% | |
| TCTTCTGCAGGTCGAGGGAA+AGG | + | chr7.2:22132452-22132471 | None:intergenic | 55.0% | |
| CAACGGGCAAGGGGACATAC+CGG | + | chr7.2:22132014-22132033 | None:intergenic | 60.0% | |
| ! | CAGGTCGAGGGAAAGGCACA+CGG | + | chr7.2:22132445-22132464 | None:intergenic | 60.0% |
| ! | GCAGCACTGGACCTCAGTTC+CGG | - | chr7.2:22131992-22132011 | MS.gene83427:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 22128873 | 22132643 | 22128873 | ID=MS.gene83427 |
| chr7.2 | mRNA | 22128873 | 22132643 | 22128873 | ID=MS.gene83427.t1;Parent=MS.gene83427 |
| chr7.2 | exon | 22132611 | 22132643 | 22132611 | ID=MS.gene83427.t1.exon1;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22132611 | 22132643 | 22132611 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22132347 | 22132412 | 22132347 | ID=MS.gene83427.t1.exon2;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22132347 | 22132412 | 22132347 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22131865 | 22131951 | 22131865 | ID=MS.gene83427.t1.exon3;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22131865 | 22131951 | 22131865 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22131223 | 22131321 | 22131223 | ID=MS.gene83427.t1.exon4;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22131223 | 22131321 | 22131223 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22130807 | 22130902 | 22130807 | ID=MS.gene83427.t1.exon5;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22130807 | 22130902 | 22130807 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22130572 | 22130637 | 22130572 | ID=MS.gene83427.t1.exon6;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22130572 | 22130637 | 22130572 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22130388 | 22130478 | 22130388 | ID=MS.gene83427.t1.exon7;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22130388 | 22130478 | 22130388 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22129668 | 22129735 | 22129668 | ID=MS.gene83427.t1.exon8;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22129668 | 22129735 | 22129668 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22129503 | 22129568 | 22129503 | ID=MS.gene83427.t1.exon9;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22129503 | 22129568 | 22129503 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22129359 | 22129409 | 22129359 | ID=MS.gene83427.t1.exon10;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22129359 | 22129409 | 22129359 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22129039 | 22129103 | 22129039 | ID=MS.gene83427.t1.exon11;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22129039 | 22129103 | 22129039 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| chr7.2 | exon | 22128873 | 22128930 | 22128873 | ID=MS.gene83427.t1.exon12;Parent=MS.gene83427.t1 |
| chr7.2 | CDS | 22128873 | 22128930 | 22128873 | ID=cds.MS.gene83427.t1;Parent=MS.gene83427.t1 |
| Gene Sequence |
| Protein sequence |
