Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83825.t1 | XP_003599003.2 | 88.9 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 1.80E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83825.t1 | Q94F39 | 34.9 | 241 | 115 | 6 | 8 | 225 | 9 | 230 | 8.0e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83825.t1 | G7IZB8 | 88.9 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 1.3e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene83825 | 0.811311 | 7.46E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene83825 | 0.80336 | 3.62E-49 | -1.69E-46 |
| MS.gene057690 | MS.gene83825 | 0.811984 | 5.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83825.t1 | MTR_3g025970 | 88.889 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 1.32e-147 | 410 |
| MS.gene83825.t1 | MTR_7g013820 | 67.606 | 71 | 22 | 1 | 151 | 220 | 287 | 357 | 6.82e-27 | 106 |
| MS.gene83825.t1 | MTR_5g045370 | 64.706 | 68 | 23 | 1 | 156 | 222 | 324 | 391 | 5.80e-23 | 97.1 |
| MS.gene83825.t1 | MTR_8g012620 | 56.338 | 71 | 30 | 1 | 156 | 225 | 225 | 295 | 3.27e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83825.t1 | AT3G29575 | 35.319 | 235 | 110 | 6 | 14 | 225 | 15 | 230 | 9.42e-32 | 116 |
| MS.gene83825.t1 | AT3G29575 | 35.319 | 235 | 110 | 6 | 14 | 225 | 15 | 230 | 9.42e-32 | 116 |
| MS.gene83825.t1 | AT3G29575 | 35.319 | 235 | 110 | 6 | 14 | 225 | 15 | 230 | 9.42e-32 | 116 |
| MS.gene83825.t1 | AT3G07255 | 54.412 | 68 | 31 | 0 | 158 | 225 | 226 | 293 | 1.74e-23 | 95.9 |
| MS.gene83825.t1 | AT1G13740 | 51.546 | 97 | 42 | 3 | 129 | 220 | 245 | 341 | 1.05e-22 | 94.7 |
| MS.gene83825.t1 | AT1G69260 | 62.500 | 64 | 23 | 1 | 158 | 220 | 273 | 336 | 8.97e-22 | 92.0 |
| MS.gene83825.t1 | AT3G02140 | 31.618 | 272 | 129 | 9 | 5 | 220 | 42 | 312 | 2.30e-17 | 79.7 |
| MS.gene83825.t1 | AT4G28910 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.09e-12 | 65.9 |
| MS.gene83825.t1 | AT4G28910 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.09e-12 | 65.9 |
| MS.gene83825.t1 | AT4G28910 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.09e-12 | 65.9 |
Find 54 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGACTATTGTAGTCTTAA+AGG | 0.159724 | 3.2:-15911479 | MS.gene83825:CDS |
| CTTGGTTGATATCTGAAATT+TGG | 0.160083 | 3.2:+15911610 | None:intergenic |
| CCTTCTATTCGCTTCCCATT+TGG | 0.252102 | 3.2:+15911401 | None:intergenic |
| GAAATATTTCTGTGTCAAAT+TGG | 0.280175 | 3.2:-15913418 | MS.gene83825:CDS |
| CTTCTATTCGCTTCCCATTT+GGG | 0.304576 | 3.2:+15911402 | None:intergenic |
| ATATCAACCAAGCATGAAAA+TGG | 0.354593 | 3.2:-15911599 | MS.gene83825:CDS |
| CCAAATGGGAAGCGAATAGA+AGG | 0.361905 | 3.2:-15911401 | MS.gene83825:CDS |
| TGCTCTCTTCCAGTTGATAG+TGG | 0.385553 | 3.2:-15913365 | MS.gene83825:CDS |
| AAAACAGTGATATGCTTCAT+TGG | 0.397580 | 3.2:+15911266 | None:intergenic |
| ATTATCCTTCCACTATCAAC+TGG | 0.442082 | 3.2:+15913356 | None:intergenic |
| ACGACTGGAGATGGCCCAAA+TGG | 0.442097 | 3.2:-15911416 | MS.gene83825:CDS |
| AGTGGAATTTCCTTGCCTAC+TGG | 0.445192 | 3.2:+15911557 | None:intergenic |
| AAGTAGAAAGCTTAAGAGTA+AGG | 0.445299 | 3.2:+15913501 | None:intergenic |
| TCATCAATTGCTGGAGAGAT+AGG | 0.451851 | 3.2:-15913440 | MS.gene83825:CDS |
| GCATGCATCACAAACTCCTT+TGG | 0.454512 | 3.2:+15911311 | None:intergenic |
| ACTCCTTCAGATGAATATCT+TGG | 0.463375 | 3.2:+15911641 | None:intergenic |
| ACTCTTAAGCTTTCTACTTG+TGG | 0.472319 | 3.2:-15913497 | MS.gene83825:CDS |
| CCTTTAAGACTACAATAGTC+GGG | 0.484073 | 3.2:+15911479 | None:intergenic |
| CAAGCATGAAAATGGTTCAA+TGG | 0.498361 | 3.2:-15911591 | MS.gene83825:CDS |
| TTAGCAAACTTAGGTGGAAG+TGG | 0.503620 | 3.2:+15911539 | None:intergenic |
| TGTTTAGTATTAGCAAACTT+AGG | 0.505715 | 3.2:+15911530 | None:intergenic |
| TGGCAGAAAAGAGGTTGATA+AGG | 0.509720 | 3.2:-15913466 | MS.gene83825:CDS |
| GTCGATCTCTAAAATGAGAC+TGG | 0.510276 | 3.2:+15911242 | None:intergenic |
| ATAAGGTCATCATCAATTGC+TGG | 0.511069 | 3.2:-15913449 | MS.gene83825:CDS |
| AAGGGTTTCTGTACAAGTAT+AGG | 0.514024 | 3.2:-15911382 | MS.gene83825:CDS |
| ACCTTTAAGACTACAATAGT+CGG | 0.514274 | 3.2:+15911478 | None:intergenic |
| TTTCTGTACAAGTATAGGTC+TGG | 0.514901 | 3.2:-15911377 | MS.gene83825:CDS |
| TCTCCAGTCGTTGTAACGCT+TGG | 0.516896 | 3.2:+15911428 | None:intergenic |
| ATGCCAAGCGTTACAACGAC+TGG | 0.521031 | 3.2:-15911431 | MS.gene83825:CDS |
| CGACTGGAGATGGCCCAAAT+GGG | 0.526168 | 3.2:-15911415 | MS.gene83825:CDS |
| GAGCAAGATCTCTCTAAAGA+TGG | 0.534736 | 3.2:+15913383 | None:intergenic |
| CTCTTCCAGTTGATAGTGGA+AGG | 0.540775 | 3.2:-15913361 | MS.gene83825:CDS |
| AGCGTTACAACGACTGGAGA+TGG | 0.557678 | 3.2:-15911425 | MS.gene83825:CDS |
| GGTCCAAGATATTCATCTGA+AGG | 0.575615 | 3.2:-15911644 | MS.gene83825:CDS |
| AAGGAGTTTGTGATGCATGC+TGG | 0.584880 | 3.2:-15911308 | MS.gene83825:CDS |
| TTCTACTTGTGGTGAAAATG+TGG | 0.592646 | 3.2:-15913486 | MS.gene83825:CDS |
| TTTCAAGAAACCAGTAGGCA+AGG | 0.595224 | 3.2:-15911567 | MS.gene83825:CDS |
| GTGAAAATGTGGCAGAAAAG+AGG | 0.596619 | 3.2:-15913475 | MS.gene83825:CDS |
| TAGTCTTAAAGGTGATGTGA+TGG | 0.597362 | 3.2:-15911468 | MS.gene83825:CDS |
| ATGGCTTTCAAGAAACCAGT+AGG | 0.605558 | 3.2:-15911572 | MS.gene83825:CDS |
| TGGTAGTTTCCTCACTCCAA+AGG | 0.606493 | 3.2:-15911327 | MS.gene83825:CDS |
| TTAGTATTAGCAAACTTAGG+TGG | 0.607623 | 3.2:+15911533 | None:intergenic |
| GCATGCTGGTGGAAAGGAAG+TGG | 0.616381 | 3.2:-15911294 | MS.gene83825:CDS |
| TGTATTGTATGTGTCTGCCA+TGG | 0.617683 | 3.2:-15911347 | MS.gene83825:CDS |
| TGTGATGCATGCTGGTGGAA+AGG | 0.617870 | 3.2:-15911300 | MS.gene83825:CDS |
| GTGGCAGATTCAGAGCTACA+TGG | 0.626711 | 3.2:-15913308 | MS.gene83825:intron |
| TCACAAACTCCTTTGGAGTG+AGG | 0.626847 | 3.2:+15911318 | None:intergenic |
| TCTCTCTAAAGATGGCACAA+AGG | 0.638446 | 3.2:+15913391 | None:intergenic |
| AAAAGAGAGGCATAGAAGTG+TGG | 0.640430 | 3.2:-15913327 | MS.gene83825:CDS |
| GGATAATGTTGCTAAAAGAG+AGG | 0.645846 | 3.2:-15913340 | MS.gene83825:CDS |
| GAGTTTGTGATGCATGCTGG+TGG | 0.651077 | 3.2:-15911305 | MS.gene83825:CDS |
| CTTTAAGACTACAATAGTCG+GGG | 0.667470 | 3.2:+15911480 | None:intergenic |
| TTGGAGTGAGGAAACTACCA+TGG | 0.693233 | 3.2:+15911330 | None:intergenic |
| CAAATGGGAAGCGAATAGAA+GGG | 0.736924 | 3.2:-15911400 | MS.gene83825:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGACATTATCAATATT+AGG | - | chr3.2:15912288-15912307 | MS.gene83825:intron | 15.0% |
| !! | ATTAAAATAAGAAGGAAAAT+AGG | + | chr3.2:15912045-15912064 | None:intergenic | 15.0% |
| !! | TATATATGATGATAACAAAT+AGG | - | chr3.2:15912103-15912122 | MS.gene83825:intron | 15.0% |
| !!! | AACTTCATTGTTATTAATTT+TGG | - | chr3.2:15911283-15911302 | MS.gene83825:CDS | 15.0% |
| !!! | TCTTCTATTTATTTTTCATA+TGG | - | chr3.2:15913029-15913048 | MS.gene83825:intron | 15.0% |
| !!! | TTTGATTTTTTTTTTTTCAG+AGG | - | chr3.2:15911349-15911368 | MS.gene83825:CDS | 15.0% |
| !! | AATCAAGTTTAACTATATTG+CGG | + | chr3.2:15912918-15912937 | None:intergenic | 20.0% |
| !! | AATTTCAATTAGTTCAATCA+CGG | + | chr3.2:15913060-15913079 | None:intergenic | 20.0% |
| !! | AATTTGAAAAATCAAAAGCA+GGG | + | chr3.2:15912473-15912492 | None:intergenic | 20.0% |
| !! | ATATTTGATCTCAAATTTGT+TGG | - | chr3.2:15911718-15911737 | MS.gene83825:intron | 20.0% |
| !! | ATTGAAATTATTGAATCATC+TGG | - | chr3.2:15913071-15913090 | MS.gene83825:intron | 20.0% |
| !! | TTAATCAAGAAAAATGTTAC+CGG | + | chr3.2:15913117-15913136 | None:intergenic | 20.0% |
| !!! | TGTGTTTTTTCGTAATATAA+AGG | + | chr3.2:15911779-15911798 | None:intergenic | 20.0% |
| !!! | TTCCTTCTTATTTTAATTGT+GGG | - | chr3.2:15912048-15912067 | MS.gene83825:intron | 20.0% |
| !!! | TTTCCTTCTTATTTTAATTG+TGG | - | chr3.2:15912047-15912066 | MS.gene83825:intron | 20.0% |
| !!! | TTTTTTTTTCAGAGGTTTTA+TGG | - | chr3.2:15911357-15911376 | MS.gene83825:CDS | 20.0% |
| ! | AAAAAACAGAACAAATTTGG+AGG | - | chr3.2:15912801-15912820 | MS.gene83825:intron | 25.0% |
| ! | AAATTGTTATCCTACATGTT+TGG | - | chr3.2:15912488-15912507 | MS.gene83825:intron | 25.0% |
| ! | AATTAGGATGAAAAGAAGTT+AGG | + | chr3.2:15913220-15913239 | None:intergenic | 25.0% |
| ! | ACGAAAAAACACAAAAAATG+TGG | - | chr3.2:15911786-15911805 | MS.gene83825:intron | 25.0% |
| ! | CAATTGTAGCCAAAATATAA+AGG | + | chr3.2:15911839-15911858 | None:intergenic | 25.0% |
| ! | CAATTTGAAAAATCAAAAGC+AGG | + | chr3.2:15912474-15912493 | None:intergenic | 25.0% |
| ! | CGTATTAAAAACCACTAAAT+GGG | - | chr3.2:15911949-15911968 | MS.gene83825:intron | 25.0% |
| ! | CTAAGTTATCAAAAGACATA+TGG | - | chr3.2:15912756-15912775 | MS.gene83825:intron | 25.0% |
| ! | TCGTATTAAAAACCACTAAA+TGG | - | chr3.2:15911948-15911967 | MS.gene83825:intron | 25.0% |
| ! | TGTTTAGTATTAGCAAACTT+AGG | + | chr3.2:15913384-15913403 | None:intergenic | 25.0% |
| ! | TTAACCAATGTTGTAAAAAC+AGG | - | chr3.2:15912841-15912860 | MS.gene83825:intron | 25.0% |
| !! | ATACTCAAATTTCTAAGAAC+AGG | - | chr3.2:15912628-15912647 | MS.gene83825:intron | 25.0% |
| !! | ATTATTTAAGACCCATTTAG+TGG | + | chr3.2:15911963-15911982 | None:intergenic | 25.0% |
| !! | CCAAAATATAAAGGATTTTG+AGG | + | chr3.2:15911830-15911849 | None:intergenic | 25.0% |
| !! | CCTCAAAATCCTTTATATTT+TGG | - | chr3.2:15911827-15911846 | MS.gene83825:intron | 25.0% |
| !! | CTATCTTTTCGATAAAAAAC+TGG | + | chr3.2:15912075-15912094 | None:intergenic | 25.0% |
| !! | GAAATATTTCTGTGTCAAAT+TGG | - | chr3.2:15911493-15911512 | MS.gene83825:CDS | 25.0% |
| !! | TAATACATGTGACTCTTTTA+AGG | + | chr3.2:15911903-15911922 | None:intergenic | 25.0% |
| !! | TATGAGTCATGACAAATTTT+CGG | - | chr3.2:15912706-15912725 | MS.gene83825:intron | 25.0% |
| !!! | AAGGTTTTTTTACATAGCTT+TGG | - | chr3.2:15912333-15912352 | MS.gene83825:intron | 25.0% |
| !!! | CTTTAGTTTTACTACTATTG+TGG | + | chr3.2:15911877-15911896 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGCTACAATTG+TGG | - | chr3.2:15911839-15911858 | MS.gene83825:intron | 25.0% |
| AAAACAGTGATATGCTTCAT+TGG | + | chr3.2:15913648-15913667 | None:intergenic | 30.0% | |
| AAAAGATACTGATACTGTGA+AGG | - | chr3.2:15912314-15912333 | MS.gene83825:intron | 30.0% | |
| AAACAGCTAAGAACTTTGAA+AGG | + | chr3.2:15913172-15913191 | None:intergenic | 30.0% | |
| AACGATGTAAATACCAACTA+AGG | + | chr3.2:15912252-15912271 | None:intergenic | 30.0% | |
| AAGTAGAAAGCTTAAGAGTA+AGG | + | chr3.2:15911413-15911432 | None:intergenic | 30.0% | |
| ACGATGTAAATACCAACTAA+GGG | + | chr3.2:15912251-15912270 | None:intergenic | 30.0% | |
| ATAAAGACACCAACCTATTA+AGG | + | chr3.2:15912158-15912177 | None:intergenic | 30.0% | |
| ATATCAACCAAGCATGAAAA+TGG | - | chr3.2:15913312-15913331 | MS.gene83825:CDS | 30.0% | |
| ATTGGTTAACACTCATAACA+TGG | + | chr3.2:15912830-15912849 | None:intergenic | 30.0% | |
| GAAATTATTGAATCATCTGG+AGG | - | chr3.2:15913074-15913093 | MS.gene83825:intron | 30.0% | |
| GAAGGAAAATAGGTAAAAGT+TGG | + | chr3.2:15912035-15912054 | None:intergenic | 30.0% | |
| GGGAAAAAACAGAACAAATT+TGG | - | chr3.2:15912798-15912817 | MS.gene83825:intron | 30.0% | |
| GTCCCACAATTAAAATAAGA+AGG | + | chr3.2:15912053-15912072 | None:intergenic | 30.0% | |
| GTGAAAATTAGAATGAGTTG+AGG | + | chr3.2:15911661-15911680 | None:intergenic | 30.0% | |
| TAGTTAAACTTGATTGAACC+AGG | - | chr3.2:15912923-15912942 | MS.gene83825:intron | 30.0% | |
| TCTAAGAACAGGAACATAAA+TGG | - | chr3.2:15912639-15912658 | MS.gene83825:intron | 30.0% | |
| TGCTACAAAATGTGATATTG+CGG | + | chr3.2:15912413-15912432 | None:intergenic | 30.0% | |
| TTAGTATTAGCAAACTTAGG+TGG | + | chr3.2:15913381-15913400 | None:intergenic | 30.0% | |
| TTCACATGTGACACATATAT+AGG | - | chr3.2:15913246-15913265 | MS.gene83825:intron | 30.0% | |
| ! | AAATGTGGTTGATATTGTTG+CGG | - | chr3.2:15911801-15911820 | MS.gene83825:intron | 30.0% |
| ! | ATGATCAGAGTACTTGTATA+AGG | - | chr3.2:15911999-15912018 | MS.gene83825:intron | 30.0% |
| ! | CTTGGTTGATATCTGAAATT+TGG | + | chr3.2:15913304-15913323 | None:intergenic | 30.0% |
| ! | TGATCAGAGTACTTGTATAA+GGG | - | chr3.2:15912000-15912019 | MS.gene83825:intron | 30.0% |
| ! | TTAGTTGGTATTTACATCGT+TGG | - | chr3.2:15912251-15912270 | MS.gene83825:intron | 30.0% |
| !! | AATAGGTTGGTGTCTTTATT+AGG | - | chr3.2:15912159-15912178 | MS.gene83825:intron | 30.0% |
| !! | ACCTTTAAGACTACAATAGT+CGG | + | chr3.2:15913436-15913455 | None:intergenic | 30.0% |
| !! | GTTAGAATGGCTCTAAATTA+CGG | + | chr3.2:15912451-15912470 | None:intergenic | 30.0% |
| AACTATATTGCGGTACAACT+GGG | + | chr3.2:15912908-15912927 | None:intergenic | 35.0% | |
| AAGGGTTTCTGTACAAGTAT+AGG | - | chr3.2:15913529-15913548 | MS.gene83825:CDS | 35.0% | |
| AATCAAAAGCAGGGTTAGAA+TGG | + | chr3.2:15912464-15912483 | None:intergenic | 35.0% | |
| ACCATGTTAAATTGTGGTTG+CGG | - | chr3.2:15911741-15911760 | MS.gene83825:intron | 35.0% | |
| ACTCCTTCAGATGAATATCT+TGG | + | chr3.2:15913273-15913292 | None:intergenic | 35.0% | |
| ACTCTTAAGCTTTCTACTTG+TGG | - | chr3.2:15911414-15911433 | MS.gene83825:CDS | 35.0% | |
| AGAACAGGAACATAAATGGT+TGG | - | chr3.2:15912643-15912662 | MS.gene83825:intron | 35.0% | |
| ATAAGGTCATCATCAATTGC+TGG | - | chr3.2:15911462-15911481 | MS.gene83825:CDS | 35.0% | |
| ATTATCCTTCCACTATCAAC+TGG | + | chr3.2:15911558-15911577 | None:intergenic | 35.0% | |
| CAACATGATACCAAACATGT+AGG | + | chr3.2:15912501-15912520 | None:intergenic | 35.0% | |
| CAAGCATGAAAATGGTTCAA+TGG | - | chr3.2:15913320-15913339 | MS.gene83825:CDS | 35.0% | |
| CACATGTGAATGCATCAATT+AGG | + | chr3.2:15913236-15913255 | None:intergenic | 35.0% | |
| CATTAATCGCCAATAACACT+AGG | + | chr3.2:15912600-15912619 | None:intergenic | 35.0% | |
| CTACATGTTTGGTATCATGT+TGG | - | chr3.2:15912499-15912518 | MS.gene83825:intron | 35.0% | |
| GAACAGGAACATAAATGGTT+GGG | - | chr3.2:15912644-15912663 | MS.gene83825:intron | 35.0% | |
| GACTCATATCTAACAAAAGC+TGG | + | chr3.2:15912694-15912713 | None:intergenic | 35.0% | |
| GGATAATGTTGCTAAAAGAG+AGG | - | chr3.2:15911571-15911590 | MS.gene83825:CDS | 35.0% | |
| TAACTATATTGCGGTACAAC+TGG | + | chr3.2:15912909-15912928 | None:intergenic | 35.0% | |
| TGATCTTATTGTCCCTTAGT+TGG | - | chr3.2:15912236-15912255 | MS.gene83825:intron | 35.0% | |
| TGTTGGACCATGTTAAATTG+TGG | - | chr3.2:15911735-15911754 | MS.gene83825:intron | 35.0% | |
| TTCTACTTGTGGTGAAAATG+TGG | - | chr3.2:15911425-15911444 | MS.gene83825:CDS | 35.0% | |
| TTTCTGTACAAGTATAGGTC+TGG | - | chr3.2:15913534-15913553 | MS.gene83825:CDS | 35.0% | |
| ! | CATTGAACCATTTTCATGCT+TGG | + | chr3.2:15913322-15913341 | None:intergenic | 35.0% |
| ! | TAGTCTTAAAGGTGATGTGA+TGG | - | chr3.2:15913443-15913462 | MS.gene83825:CDS | 35.0% |
| !! | CCTTTAAGACTACAATAGTC+GGG | + | chr3.2:15913435-15913454 | None:intergenic | 35.0% |
| !! | CTTTAAGACTACAATAGTCG+GGG | + | chr3.2:15913434-15913453 | None:intergenic | 35.0% |
| !! | TTTGAAAGGCGTCTCAAAAT+CGG | + | chr3.2:15913158-15913177 | None:intergenic | 35.0% |
| ACCGCAACCACAATTTAACA+TGG | + | chr3.2:15911745-15911764 | None:intergenic | 40.0% | |
| AGACATATGGCTACGAGTTT+AGG | - | chr3.2:15912769-15912788 | MS.gene83825:intron | 40.0% | |
| ATGGCTTTCAAGAAACCAGT+AGG | - | chr3.2:15913339-15913358 | MS.gene83825:CDS | 40.0% | |
| CAAATGGGAAGCGAATAGAA+GGG | - | chr3.2:15913511-15913530 | MS.gene83825:CDS | 40.0% | |
| CAACCTATTAAGGATCTCGT+TGG | + | chr3.2:15912148-15912167 | None:intergenic | 40.0% | |
| CAACGAGATCCTTAATAGGT+TGG | - | chr3.2:15912146-15912165 | MS.gene83825:intron | 40.0% | |
| CAGCATTACATCTGCAATTG+CGG | - | chr3.2:15912367-15912386 | MS.gene83825:intron | 40.0% | |
| CTAAATTACGGTTGCAACTG+TGG | + | chr3.2:15912439-15912458 | None:intergenic | 40.0% | |
| CTTCTATTCGCTTCCCATTT+GGG | + | chr3.2:15913512-15913531 | None:intergenic | 40.0% | |
| GGTCCAAGATATTCATCTGA+AGG | - | chr3.2:15913267-15913286 | MS.gene83825:intron | 40.0% | |
| GTGAAAATGTGGCAGAAAAG+AGG | - | chr3.2:15911436-15911455 | MS.gene83825:CDS | 40.0% | |
| TCATCAATTGCTGGAGAGAT+AGG | - | chr3.2:15911471-15911490 | MS.gene83825:CDS | 40.0% | |
| TGTATTGTATGTGTCTGCCA+TGG | - | chr3.2:15913564-15913583 | MS.gene83825:intron | 40.0% | |
| TGTTCGTGTCCTAGTGTTAT+TGG | - | chr3.2:15912588-15912607 | MS.gene83825:intron | 40.0% | |
| TTAGCAAACTTAGGTGGAAG+TGG | + | chr3.2:15913375-15913394 | None:intergenic | 40.0% | |
| TTTCAAGAAACCAGTAGGCA+AGG | - | chr3.2:15913344-15913363 | MS.gene83825:CDS | 40.0% | |
| ! | AAAAGAGAGGCATAGAAGTG+TGG | - | chr3.2:15911584-15911603 | MS.gene83825:CDS | 40.0% |
| ! | CCCGACTATTGTAGTCTTAA+AGG | - | chr3.2:15913432-15913451 | MS.gene83825:CDS | 40.0% |
| ! | GAGCAAGATCTCTCTAAAGA+TGG | + | chr3.2:15911531-15911550 | None:intergenic | 40.0% |
| ! | TCTCTCTAAAGATGGCACAA+AGG | + | chr3.2:15911523-15911542 | None:intergenic | 40.0% |
| !! | TGGCAGAAAAGAGGTTGATA+AGG | - | chr3.2:15911445-15911464 | MS.gene83825:CDS | 40.0% |
| !!! | CGGTCCTGTTTTTACAACAT+TGG | + | chr3.2:15912848-15912867 | None:intergenic | 40.0% |
| !!! | TCATTTTGAAGCGCGTACAT+CGG | + | chr3.2:15912529-15912548 | None:intergenic | 40.0% |
| AAAAACAGGACCGAACCTGT+CGG | - | chr3.2:15912855-15912874 | MS.gene83825:intron | 45.0% | |
| AAGGAGTTTGTGATGCATGC+TGG | - | chr3.2:15913603-15913622 | MS.gene83825:intron | 45.0% | |
| AGTGGAATTTCCTTGCCTAC+TGG | + | chr3.2:15913357-15913376 | None:intergenic | 45.0% | |
| CAGGAACATAAATGGTTGGG+AGG | - | chr3.2:15912647-15912666 | MS.gene83825:intron | 45.0% | |
| CCAAATGGGAAGCGAATAGA+AGG | - | chr3.2:15913510-15913529 | MS.gene83825:CDS | 45.0% | |
| CCTATTAAGGATCTCGTTGG+AGG | + | chr3.2:15912145-15912164 | None:intergenic | 45.0% | |
| CCTCCAACGAGATCCTTAAT+AGG | - | chr3.2:15912142-15912161 | MS.gene83825:intron | 45.0% | |
| CCTTCTATTCGCTTCCCATT+TGG | + | chr3.2:15913513-15913532 | None:intergenic | 45.0% | |
| GAACCAGGTTAAACTGCAAC+TGG | - | chr3.2:15912938-15912957 | MS.gene83825:intron | 45.0% | |
| GCATGCATCACAAACTCCTT+TGG | + | chr3.2:15913603-15913622 | None:intergenic | 45.0% | |
| GCTACGAGTTTAGGAGCAAT+GGG | - | chr3.2:15912778-15912797 | MS.gene83825:intron | 45.0% | |
| TGGTAGTTTCCTCACTCCAA+AGG | - | chr3.2:15913584-15913603 | MS.gene83825:intron | 45.0% | |
| TTACCGGAGATCGATACAGT+AGG | + | chr3.2:15913101-15913120 | None:intergenic | 45.0% | |
| TTGGAGTGAGGAAACTACCA+TGG | + | chr3.2:15913584-15913603 | None:intergenic | 45.0% | |
| !! | CTCTTCCAGTTGATAGTGGA+AGG | - | chr3.2:15911550-15911569 | MS.gene83825:CDS | 45.0% |
| !! | TCACAAACTCCTTTGGAGTG+AGG | + | chr3.2:15913596-15913615 | None:intergenic | 45.0% |
| !! | TGCTCTCTTCCAGTTGATAG+TGG | - | chr3.2:15911546-15911565 | MS.gene83825:CDS | 45.0% |
| !!! | TTAACTTTTAATTTTTTATA+TGG | - | chr3.2:15911685-15911704 | MS.gene83825:intron | 5.0% |
| AGCGTTACAACGACTGGAGA+TGG | - | chr3.2:15913486-15913505 | MS.gene83825:CDS | 50.0% | |
| ATGCCAAGCGTTACAACGAC+TGG | - | chr3.2:15913480-15913499 | MS.gene83825:CDS | 50.0% | |
| CTGCCAGTTGCAGTTTAACC+TGG | + | chr3.2:15912944-15912963 | None:intergenic | 50.0% | |
| GAGTTTGTGATGCATGCTGG+TGG | - | chr3.2:15913606-15913625 | MS.gene83825:intron | 50.0% | |
| GGCTACGAGTTTAGGAGCAA+TGG | - | chr3.2:15912777-15912796 | MS.gene83825:intron | 50.0% | |
| GTGGCAGATTCAGAGCTACA+TGG | - | chr3.2:15911603-15911622 | MS.gene83825:CDS | 50.0% | |
| TCTCCAGTCGTTGTAACGCT+TGG | + | chr3.2:15913486-15913505 | None:intergenic | 50.0% | |
| TGTCGGTACTGTCTGTTTGC+TGG | - | chr3.2:15912872-15912891 | MS.gene83825:intron | 50.0% | |
| TGTGATGCATGCTGGTGGAA+AGG | - | chr3.2:15913611-15913630 | MS.gene83825:intron | 50.0% | |
| ! | GGTACTGTCTGTTTGCTGGT+TGG | - | chr3.2:15912876-15912895 | MS.gene83825:intron | 50.0% |
| ! | GGTCCTACTGTATCGATCTC+CGG | - | chr3.2:15913095-15913114 | MS.gene83825:intron | 50.0% |
| !! | ACAGACAGTACCGACAGGTT+CGG | + | chr3.2:15912868-15912887 | None:intergenic | 50.0% |
| !! | AGCAAACAGACAGTACCGAC+AGG | + | chr3.2:15912873-15912892 | None:intergenic | 50.0% |
| ACGACTGGAGATGGCCCAAA+TGG | - | chr3.2:15913495-15913514 | MS.gene83825:CDS | 55.0% | |
| CGACTGGAGATGGCCCAAAT+GGG | - | chr3.2:15913496-15913515 | MS.gene83825:CDS | 55.0% | |
| GCATGCTGGTGGAAAGGAAG+TGG | - | chr3.2:15913617-15913636 | MS.gene83825:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 15911250 | 15913683 | 15911250 | ID=MS.gene83825 |
| chr3.2 | mRNA | 15911250 | 15913683 | 15911250 | ID=MS.gene83825.t1;Parent=MS.gene83825 |
| chr3.2 | exon | 15913678 | 15913683 | 15913678 | ID=MS.gene83825.t1.exon1;Parent=MS.gene83825.t1 |
| chr3.2 | CDS | 15913678 | 15913683 | 15913678 | ID=cds.MS.gene83825.t1;Parent=MS.gene83825.t1 |
| chr3.2 | exon | 15913309 | 15913564 | 15913309 | ID=MS.gene83825.t1.exon2;Parent=MS.gene83825.t1 |
| chr3.2 | CDS | 15913309 | 15913564 | 15913309 | ID=cds.MS.gene83825.t1;Parent=MS.gene83825.t1 |
| chr3.2 | exon | 15911250 | 15911665 | 15911250 | ID=MS.gene83825.t1.exon3;Parent=MS.gene83825.t1 |
| chr3.2 | CDS | 15911250 | 15911665 | 15911250 | ID=cds.MS.gene83825.t1;Parent=MS.gene83825.t1 |
| Gene Sequence |
| Protein sequence |
