AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83857


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83857.t1 MTR_7g087110 97.947 341 7 0 1 341 1 341 0.0 682
MS.gene83857.t1 MTR_4g087490 57.994 319 124 1 33 341 15 333 4.86e-136 391
MS.gene83857.t1 MTR_4g087510 55.172 319 124 3 33 341 15 324 2.95e-126 366
MS.gene83857.t1 MTR_1g081610 63.481 293 97 1 59 341 2 294 1.22e-119 348
MS.gene83857.t1 MTR_5g006340 63.415 287 95 1 65 341 8 294 1.63e-119 348
MS.gene83857.t1 MTR_1g103690 63.763 287 94 1 65 341 8 294 7.91e-119 346
MS.gene83857.t1 MTR_1g081620 59.930 287 105 1 65 341 7 293 1.44e-113 333
MS.gene83857.t1 MTR_1g081625 60.627 287 103 1 65 341 7 293 2.44e-110 324
MS.gene83857.t1 MTR_7g078070 50.156 321 146 2 35 341 27 347 3.91e-108 321
MS.gene83857.t1 MTR_7g078070 53.214 280 121 1 72 341 8 287 6.36e-103 305
MS.gene83857.t1 MTR_1g081640 58.273 278 106 1 65 332 7 284 1.17e-97 292
MS.gene83857.t1 MTR_4g087520 63.750 240 77 1 113 342 1 240 1.67e-96 287
MS.gene83857.t1 MTR_7g078070 52.569 253 110 1 99 341 2 254 3.42e-90 272
MS.gene83857.t1 MTR_5g095670 27.492 331 172 6 69 332 48 377 1.10e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83857.t1 AT3G03630 80.783 281 54 0 61 341 95 375 3.55e-156 444
MS.gene83857.t1 AT3G59760 64.286 294 95 1 59 342 107 400 2.21e-125 367
MS.gene83857.t1 AT3G59760 64.286 294 95 1 59 342 107 400 2.52e-125 367
MS.gene83857.t1 AT3G59760 64.286 294 95 1 59 342 107 400 2.75e-125 366
MS.gene83857.t1 AT2G43750 63.265 294 98 1 59 342 69 362 6.33e-124 362
MS.gene83857.t1 AT2G43750 63.265 294 98 1 59 342 69 362 6.33e-124 362
MS.gene83857.t1 AT4G14880 63.448 290 96 1 62 341 2 291 2.57e-120 350
MS.gene83857.t1 AT4G14880 63.448 290 96 1 62 341 2 291 2.57e-120 350
MS.gene83857.t1 AT4G14880 63.448 290 96 1 62 341 2 291 2.57e-120 350
MS.gene83857.t1 AT4G14880 63.448 290 96 1 62 341 2 291 2.57e-120 350
MS.gene83857.t1 AT4G14880 63.448 290 96 1 62 341 2 291 2.57e-120 350
MS.gene83857.t1 AT3G04940 58.419 291 111 1 61 341 4 294 2.54e-112 330
MS.gene83857.t1 AT3G04940 58.419 291 111 1 61 341 4 294 2.54e-112 330
MS.gene83857.t1 AT3G61440 51.613 310 137 2 45 341 26 335 5.75e-105 312
MS.gene83857.t1 AT5G28020 56.357 291 117 1 61 341 3 293 1.62e-103 307
MS.gene83857.t1 AT5G28020 56.357 291 117 1 61 341 3 293 1.62e-103 307
MS.gene83857.t1 AT5G28020 56.357 291 117 1 61 341 3 293 1.62e-103 307
MS.gene83857.t1 AT5G28020 56.357 291 117 1 61 341 3 293 1.62e-103 307
MS.gene83857.t1 AT5G28020 56.357 291 117 1 61 341 3 293 1.62e-103 307
MS.gene83857.t1 AT5G28030 57.045 291 115 1 61 341 3 293 3.62e-103 306
MS.gene83857.t1 AT5G28030 57.045 291 115 1 61 341 3 293 3.62e-103 306
MS.gene83857.t1 AT5G28030 57.045 291 115 1 61 341 3 293 3.62e-103 306
MS.gene83857.t1 AT5G28030 57.045 291 115 1 61 341 3 293 3.62e-103 306
MS.gene83857.t1 AT3G61440 49.477 287 132 2 45 318 26 312 4.60e-93 281
MS.gene83857.t1 AT3G22460 67.391 184 60 0 62 245 5 188 1.77e-90 269
MS.gene83857.t1 AT3G22460 58.577 239 69 2 113 341 1 219 8.06e-89 267
MS.gene83857.t1 AT5G28030 53.785 251 106 1 61 301 3 253 1.06e-88 267
MS.gene83857.t1 AT3G61440 54.812 239 98 1 113 341 1 239 1.50e-84 257
MS.gene83857.t1 AT3G61440 53.991 213 88 1 139 341 2 214 3.35e-72 224
MS.gene83857.t1 AT5G28020 52.174 207 89 1 145 341 1 207 2.95e-57 186
MS.gene83857.t1 AT1G55880 26.524 328 172 4 73 332 48 374 1.23e-30 120
MS.gene83857.t1 AT1G55880 29.237 236 125 3 73 267 48 282 2.89e-28 112

Find 89 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGGTAATGTTGATTTAT+TGG 0.219728 7.4:-20786708 MS.gene83857:CDS
GCAAGACGGCCTGAAAATTC+TGG 0.224053 7.4:-20785183 MS.gene83857:CDS
ATTTAGGTTGGGATTTCTTC+AGG 0.295892 7.4:-20785234 MS.gene83857:intron
AGGTTTCATACCAAGCATTT+TGG 0.299848 7.4:-20785927 MS.gene83857:CDS
CTGCACCAAATGTTCGTAAA+AGG 0.315843 7.4:+20787026 None:intergenic
AGCATTGGAAGAAGGATTAC+TGG 0.317790 7.4:-20785588 MS.gene83857:intron
GATTTATTGGTTGCTGCTAT+TGG 0.320316 7.4:-20786695 MS.gene83857:CDS
AAACTACAGGGCCAGAGATA+TGG 0.322753 7.4:-20786739 MS.gene83857:CDS
GGAACTGGCGGCACTATTAC+AGG 0.362045 7.4:-20786674 MS.gene83857:CDS
TTGGTTGCTGCTATTGGAAC+TGG 0.363826 7.4:-20786689 MS.gene83857:CDS
TATTGTCCAATTAGGTGGTT+GGG 0.365276 7.4:-20786113 MS.gene83857:intron
TGTTTCGACAGTTTGATAAC+AGG 0.383372 7.4:-20786916 MS.gene83857:CDS
GACATCTTCGGCAATGTTAA+CGG 0.386866 7.4:+20787698 None:intergenic
ATACGGAGAAGGGGCTGAAA+GGG 0.394439 7.4:-20786988 MS.gene83857:CDS
CGGAAATTGTTCGGCGGAAA+CGG 0.397606 7.4:+20787778 None:intergenic
GGAGGAAGAATTGTTGTAGA+AGG 0.410209 7.4:+20787837 None:intergenic
CAATGTTGAAGCTATTGAAA+TGG 0.412094 7.4:-20785621 MS.gene83857:CDS
TGGCGGTTGCGGAAATTGTT+CGG 0.412179 7.4:+20787769 None:intergenic
AACTACAGGGCCAGAGATAT+GGG 0.421851 7.4:-20786738 MS.gene83857:CDS
TGAACCTACAACTGGAAATA+CGG 0.427191 7.4:-20787134 MS.gene83857:CDS
AGTGGAGACGGTGGCGGTTG+CGG 0.445610 7.4:+20787758 None:intergenic
GACACTTCTGCAAGGTTCCA+TGG 0.445890 7.4:+20787434 None:intergenic
AGTCCCGTATTTCCAGTTGT+AGG 0.463176 7.4:+20787130 None:intergenic
ATTGTATCCTCCCATATCTC+TGG 0.468122 7.4:+20786728 None:intergenic
CTCTCAATATTAACAGAAGC+AGG 0.470025 7.4:+20787055 None:intergenic
CATTTCAATAGCTTCAACAT+TGG 0.481271 7.4:+20785622 None:intergenic
CAGATCCACTTCGAAACTAC+AGG 0.481457 7.4:-20786752 MS.gene83857:CDS
GAGAGTGGAGCAATTTCTCC+GGG 0.484537 7.4:-20787295 MS.gene83857:CDS
AACGGCGTCAAGTCCTTCTC+TGG 0.489128 7.4:+20787716 None:intergenic
AATGAATGAATGCAGTTGCT+TGG 0.500624 7.4:-20787528 MS.gene83857:intron
AGGAGATTAGCATTGGAAGA+AGG 0.512069 7.4:-20785596 MS.gene83857:CDS
ATATTGTCCAATTAGGTGGT+TGG 0.512082 7.4:-20786114 MS.gene83857:intron
AGAGAGTGGAGCAATTTCTC+CGG 0.512757 7.4:-20787296 MS.gene83857:CDS
TGCTGCAAAACTTGAATCCA+TGG 0.513342 7.4:-20787451 MS.gene83857:CDS
AATGGCAAGGAGATTAGCAT+TGG 0.519243 7.4:-20785603 MS.gene83857:CDS
CTGTCGAAACATGTAAGCAT+TGG 0.520384 7.4:+20786928 None:intergenic
TGTCGAAACATGTAAGCATT+GGG 0.521342 7.4:+20786929 None:intergenic
GAGATTATACTTCTATCTGC+AGG 0.521691 7.4:+20786084 None:intergenic
TTCGGCGGAAACGGATGTTA+CGG 0.521778 7.4:+20787787 None:intergenic
GCAGATAGAAGTATAATCTC+AGG 0.522284 7.4:-20786081 MS.gene83857:CDS
AATACGGAGAAGGGGCTGAA+AGG 0.534274 7.4:-20786989 MS.gene83857:CDS
AAGTACCTGAGTGACATCTT+CGG 0.537012 7.4:+20787686 None:intergenic
GGCGGCACTATTACAGGCAC+GGG 0.543505 7.4:-20786668 MS.gene83857:CDS
GAAGAGTGACGGAGTGGAGA+CGG 0.545076 7.4:+20787746 None:intergenic
ACAACTGGAAATACGGGACT+TGG 0.546776 7.4:-20787127 MS.gene83857:CDS
CTGCTTCTGTTAATATTGAG+AGG 0.547745 7.4:-20787054 MS.gene83857:CDS
ATTGTCCAATTAGGTGGTTG+GGG 0.557023 7.4:-20786112 MS.gene83857:intron
TGGAGCAATTTCTCCGGGGA+AGG 0.557633 7.4:-20787290 MS.gene83857:intron
GAACCTACAACTGGAAATAC+GGG 0.559847 7.4:-20787133 MS.gene83857:CDS
AGAGATATGGGAGGATACAA+TGG 0.560494 7.4:-20786726 MS.gene83857:CDS
CTTGCAGAAGTGTCAAGGAT+AGG 0.564739 7.4:-20787425 MS.gene83857:intron
CCTTCACAACATACCTTCCC+CGG 0.566206 7.4:+20787277 None:intergenic
ATAATCTCAGGAGACAATCC+AGG 0.573091 7.4:-20786069 MS.gene83857:intron
GTCCAATTAGGTGGTTGGGG+TGG 0.573355 7.4:-20786109 MS.gene83857:intron
GGTAGAGAAGAGTGACGGAG+TGG 0.573405 7.4:+20787740 None:intergenic
AGTTTGATATCCAAAATGCT+TGG 0.575054 7.4:+20785917 None:intergenic
TTTACGAACATTTGGTGCAG+AGG 0.579114 7.4:-20787023 MS.gene83857:CDS
TATCTGAATAAAGTTACAGA+TGG 0.581662 7.4:-20787489 MS.gene83857:CDS
GAGATATGGGAGGATACAAT+GGG 0.581694 7.4:-20786725 MS.gene83857:CDS
CTCTTCTCTACCACCAGAGA+AGG 0.585995 7.4:-20787729 MS.gene83857:CDS
ACTGCTTGATGAAGTTGTCA+AGG 0.593212 7.4:-20785897 MS.gene83857:intron
GTAGTGAAAGGACGCGAAGG+AGG 0.594872 7.4:+20787819 None:intergenic
TACGGAGAAGGGGCTGAAAG+GGG 0.595246 7.4:-20786987 MS.gene83857:CDS
CGGTGGAATTGAGTAGTGAA+AGG 0.596011 7.4:+20787807 None:intergenic
TGACGGAGTGGAGACGGTGG+CGG 0.598117 7.4:+20787752 None:intergenic
TTGAAGCTATTGAAATGGCA+AGG 0.601957 7.4:-20785616 MS.gene83857:CDS
TGGCGGCACTATTACAGGCA+CGG 0.602529 7.4:-20786669 MS.gene83857:CDS
ACTTTATTCAGATATATCAT+CGG 0.603173 7.4:+20787498 None:intergenic
CTATCCTTGACACTTCTGCA+AGG 0.605345 7.4:+20787426 None:intergenic
GGAACCTTGCAGAAGTGTCA+AGG 0.610247 7.4:-20787430 MS.gene83857:CDS
CTGGCCCTGTAGTTTCGAAG+TGG 0.612111 7.4:+20786747 None:intergenic
TCGTTGCGGCAACAAAAGCA+AGG 0.615870 7.4:+20787104 None:intergenic
GGCGTCAAGTCCTTCTCTGG+TGG 0.626862 7.4:+20787719 None:intergenic
AAACATGTAAGCATTGGGTG+TGG 0.635335 7.4:+20786934 None:intergenic
TGAGTAGTGAAAGGACGCGA+AGG 0.635583 7.4:+20787816 None:intergenic
TTAGCTGATGCTGAAGAGAG+TGG 0.644083 7.4:-20787310 MS.gene83857:CDS
GAGTGACGGAGTGGAGACGG+TGG 0.648563 7.4:+20787749 None:intergenic
CAGTTTATAACCCTTCGTTG+CGG 0.649465 7.4:+20787090 None:intergenic
CATTGCCGAAGATGTCACTC+AGG 0.650049 7.4:-20787691 MS.gene83857:intron
AGATCCACTTCGAAACTACA+GGG 0.653448 7.4:-20786751 MS.gene83857:CDS
CTGCGATAACTTTAGCAAGA+CGG 0.659607 7.4:-20785197 MS.gene83857:CDS
AAATTCTGGAAAACTTATAG+CGG 0.664780 7.4:-20785169 None:intergenic
CTGGTGGTAGAGAAGAGTGA+CGG 0.669365 7.4:+20787735 None:intergenic
GGCGGAAACGGATGTTACGG+TGG 0.687677 7.4:+20787790 None:intergenic
GTTGCTGCTATTGGAACTGG+CGG 0.697744 7.4:-20786686 MS.gene83857:CDS
TGATAACAGGAATAACACAA+AGG 0.697943 7.4:-20786903 MS.gene83857:intron
CGGTTGCGGAAATTGTTCGG+CGG 0.700758 7.4:+20787772 None:intergenic
TACAGGGCCAGAGATATGGG+AGG 0.730792 7.4:-20786735 MS.gene83857:CDS
AGAGTGGAGCAATTTCTCCG+GGG 0.772818 7.4:-20787294 MS.gene83857:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAATGAATAAAAAAA+AGG + chr7.4:20785681-20785700 None:intergenic 10.0%
!! AATGATGAACAAAAAAATAA+AGG - chr7.4:20786419-20786438 MS.gene83857:intron 15.0%
!! ATTCAATTTAGTTATTTGTT+TGG - chr7.4:20787685-20787704 MS.gene83857:intron 15.0%
!! CATAATATAATGAAGATTAT+GGG - chr7.4:20787529-20787548 MS.gene83857:intron 15.0%
!! TCATAATATAATGAAGATTA+TGG - chr7.4:20787528-20787547 MS.gene83857:intron 15.0%
!! TTCAAAAAAAAAATTTAGGT+TGG - chr7.4:20787806-20787825 MS.gene83857:CDS 15.0%
!!! AATTTCTTTTAATACCAATA+AGG + chr7.4:20786558-20786577 None:intergenic 15.0%
!!! ATACCATAAAATTTAAAACA+CGG + chr7.4:20786219-20786238 None:intergenic 15.0%
!!! TAATGATTTTTTTAAAGCTT+AGG - chr7.4:20785836-20785855 MS.gene83857:intron 15.0%
!!! TCAAAAAAAAAATTTAGGTT+GGG - chr7.4:20787807-20787826 MS.gene83857:CDS 15.0%
!! AAATACAAAACTAATGATGA+AGG + chr7.4:20787711-20787730 None:intergenic 20.0%
!! AAATTGAATCATATACTTGT+TGG - chr7.4:20786477-20786496 MS.gene83857:intron 20.0%
!! AATAACATAATGCATATCAA+AGG + chr7.4:20786455-20786474 None:intergenic 20.0%
!! ACTTTATTCAGATATATCAT+CGG + chr7.4:20785557-20785576 None:intergenic 20.0%
!! ATATATGACAATTTAATGCT+AGG + chr7.4:20786922-20786941 None:intergenic 20.0%
!! TCATATACATTTGAAAATGT+TGG - chr7.4:20785486-20785505 MS.gene83857:intron 20.0%
!!! AGTAGGTTTTTTATTTTTTG+AGG - chr7.4:20787607-20787626 MS.gene83857:intron 20.0%
!!! AGTTTAAAATGCCAAAATAT+TGG + chr7.4:20787564-20787583 None:intergenic 20.0%
!!! ATCATTAGTTTTGTATTTTC+TGG - chr7.4:20787713-20787732 MS.gene83857:CDS 20.0%
!!! GTAGGTTTTTTATTTTTTGA+GGG - chr7.4:20787608-20787627 MS.gene83857:intron 20.0%
!!! TACCATAAAATTTAAAACAC+GGG + chr7.4:20786218-20786237 None:intergenic 20.0%
!!! TATCCTCATTTAGTTTTATT+TGG - chr7.4:20787644-20787663 MS.gene83857:intron 20.0%
!!! TCATTAGTTTTGTATTTTCT+GGG - chr7.4:20787714-20787733 MS.gene83857:CDS 20.0%
!!! TGAAGTTAGAATTTTATTTC+TGG - chr7.4:20787208-20787227 MS.gene83857:intron 20.0%
!!! TTTTTTTAAAGCTTAGGTTA+CGG - chr7.4:20785842-20785861 MS.gene83857:intron 20.0%
! AAAAAAAGGATCCAATAGAA+AGG - chr7.4:20786714-20786733 MS.gene83857:CDS 25.0%
! ACACCAAATAAAACTAAATG+AGG + chr7.4:20787650-20787669 None:intergenic 25.0%
! AGCGAAGGAAAAAAAAAAAA+AGG - chr7.4:20786700-20786719 MS.gene83857:CDS 25.0%
! GAAATCTATTACACAAGTTA+AGG + chr7.4:20786608-20786627 None:intergenic 25.0%
! TATCTGAATAAAGTTACAGA+TGG - chr7.4:20785563-20785582 MS.gene83857:intron 25.0%
! TTGTCATATATTGTCCAATT+AGG - chr7.4:20786931-20786950 MS.gene83857:CDS 25.0%
!! ACTGTTTAAAATGTCAGAAT+TGG - chr7.4:20785709-20785728 MS.gene83857:intron 25.0%
!! ATAAGTTTTCCAGAATTTTC+AGG + chr7.4:20787881-20787900 None:intergenic 25.0%
!! TCTACATTTAAAGTGAAAGT+CGG - chr7.4:20786872-20786891 MS.gene83857:intron 25.0%
!! TTTAAAACACGGGATTAAAA+AGG + chr7.4:20786208-20786227 None:intergenic 25.0%
!! TTTTAATACCAATAAGGTGA+AGG + chr7.4:20786552-20786571 None:intergenic 25.0%
!! TTTTGCATATAAACTGAAGT+AGG - chr7.4:20787590-20787609 MS.gene83857:intron 25.0%
!!! AATGGGTAATGTTGATTTAT+TGG - chr7.4:20786344-20786363 MS.gene83857:intron 25.0%
!!! ATCCCGTGTTTTAAATTTTA+TGG - chr7.4:20786213-20786232 MS.gene83857:intron 25.0%
!!! TTTGCTGTTATCTTTTATCT+TGG - chr7.4:20787388-20787407 MS.gene83857:intron 25.0%
AAAACATTCTGGTCAATTCA+TGG + chr7.4:20786783-20786802 None:intergenic 30.0%
AAACAAGAATAAGCTCAAAC+AGG + chr7.4:20787243-20787262 None:intergenic 30.0%
AATTCTAACTTCACAACAGA+AGG + chr7.4:20787201-20787220 None:intergenic 30.0%
AGTTTGATATCCAAAATGCT+TGG + chr7.4:20787138-20787157 None:intergenic 30.0%
ATAAGAAAATCTGTTTCAGG+TGG + chr7.4:20787074-20787093 None:intergenic 30.0%
ATCTTGGCATATGAAATTAC+AGG - chr7.4:20787404-20787423 MS.gene83857:intron 30.0%
ATTCTAACTTCACAACAGAA+GGG + chr7.4:20787200-20787219 None:intergenic 30.0%
CAAGTCTTACTAAAACATTC+TGG + chr7.4:20786794-20786813 None:intergenic 30.0%
CAATGTTGAAGCTATTGAAA+TGG - chr7.4:20787431-20787450 MS.gene83857:CDS 30.0%
CATTTCAATAGCTTCAACAT+TGG + chr7.4:20787433-20787452 None:intergenic 30.0%
CTGATAAGAAAATCTGTTTC+AGG + chr7.4:20787077-20787096 None:intergenic 30.0%
GAGAAAGCAAGAAAAAGAAA+AGG + chr7.4:20787041-20787060 None:intergenic 30.0%
GGTTATGGAATTTGAATTCA+TGG + chr7.4:20786531-20786550 None:intergenic 30.0%
TAGTTATTTAGTCATTGCAC+TGG - chr7.4:20787332-20787351 MS.gene83857:intron 30.0%
TCATATATTGTCCAATTAGG+TGG - chr7.4:20786934-20786953 MS.gene83857:CDS 30.0%
TGATAACAGGAATAACACAA+AGG - chr7.4:20786149-20786168 MS.gene83857:intron 30.0%
TGCTAGAATAGCTATACTAA+TGG + chr7.4:20786746-20786765 None:intergenic 30.0%
TTTCGTAAAAGATTCATACC+TGG + chr7.4:20787004-20787023 None:intergenic 30.0%
! AGAATCCTTTTACGAACATT+TGG - chr7.4:20786021-20786040 MS.gene83857:intron 30.0%
! CTACATTTAAAGTGAAAGTC+GGG - chr7.4:20786873-20786892 MS.gene83857:intron 30.0%
! GGCTAAGTTTTCCAATATTT+TGG - chr7.4:20787550-20787569 MS.gene83857:intron 30.0%
! TATCAGTTGTTGACTGTATT+GGG - chr7.4:20787091-20787110 MS.gene83857:CDS 30.0%
! TTATCAGTTGTTGACTGTAT+TGG - chr7.4:20787090-20787109 MS.gene83857:CDS 30.0%
AATGAATGAATGCAGTTGCT+TGG - chr7.4:20785524-20785543 MS.gene83857:intron 35.0%
AATGGTCTATGCCTTTCTAT+TGG + chr7.4:20786728-20786747 None:intergenic 35.0%
ATATTGTCCAATTAGGTGGT+TGG - chr7.4:20786938-20786957 MS.gene83857:CDS 35.0%
ATGGCTTGATACAGAGAATT+AGG + chr7.4:20786512-20786531 None:intergenic 35.0%
CCATAAGCTACAAAGTAACT+TGG - chr7.4:20787750-20787769 MS.gene83857:CDS 35.0%
CTCTCAATATTAACAGAAGC+AGG + chr7.4:20786000-20786019 None:intergenic 35.0%
CTGCTTCTGTTAATATTGAG+AGG - chr7.4:20785998-20786017 MS.gene83857:intron 35.0%
GAGATTATACTTCTATCTGC+AGG + chr7.4:20786971-20786990 None:intergenic 35.0%
TACCAATAAGGTGAAGGTTA+TGG + chr7.4:20786546-20786565 None:intergenic 35.0%
TATTGTCCAATTAGGTGGTT+GGG - chr7.4:20786939-20786958 MS.gene83857:CDS 35.0%
TGAACCTACAACTGGAAATA+CGG - chr7.4:20785918-20785937 MS.gene83857:CDS 35.0%
TGTCGAAACATGTAAGCATT+GGG + chr7.4:20786126-20786145 None:intergenic 35.0%
TTATTTAGTCATTGCACTGG+TGG - chr7.4:20787335-20787354 MS.gene83857:intron 35.0%
TTCCATAACCTTCACCTTAT+TGG - chr7.4:20786541-20786560 MS.gene83857:intron 35.0%
TTCTAACTTCACAACAGAAG+GGG + chr7.4:20787199-20787218 None:intergenic 35.0%
TTGAAGCTATTGAAATGGCA+AGG - chr7.4:20787436-20787455 MS.gene83857:CDS 35.0%
TTGTGAGATATACCTGAATG+TGG - chr7.4:20786816-20786835 MS.gene83857:intron 35.0%
TTTCTCATATTTAGTGCTCG+AGG - chr7.4:20786624-20786643 MS.gene83857:intron 35.0%
! AGGTTTCATACCAAGCATTT+TGG - chr7.4:20787125-20787144 MS.gene83857:CDS 35.0%
! ATCAGTTGTTGACTGTATTG+GGG - chr7.4:20787092-20787111 MS.gene83857:CDS 35.0%
! CCAAGTTACTTTGTAGCTTA+TGG + chr7.4:20787753-20787772 None:intergenic 35.0%
! CTGTTTCAGGTGGAAATTAA+GGG + chr7.4:20787064-20787083 None:intergenic 35.0%
! GATTTATTGGTTGCTGCTAT+TGG - chr7.4:20786357-20786376 MS.gene83857:intron 35.0%
! GCAGATAGAAGTATAATCTC+AGG - chr7.4:20786971-20786990 MS.gene83857:CDS 35.0%
! GTATGTTGTGAAGGATTTTG+TGG - chr7.4:20785784-20785803 MS.gene83857:intron 35.0%
! TCTGTTTCAGGTGGAAATTA+AGG + chr7.4:20787065-20787084 None:intergenic 35.0%
! TGTTTCAGGTGGAAATTAAG+GGG + chr7.4:20787063-20787082 None:intergenic 35.0%
! TGTTTCGACAGTTTGATAAC+AGG - chr7.4:20786136-20786155 MS.gene83857:intron 35.0%
!! ATTTAGGTTGGGATTTCTTC+AGG - chr7.4:20787818-20787837 MS.gene83857:CDS 35.0%
!!! AGAGGTTGTTTTGACGAATA+CGG - chr7.4:20786047-20786066 MS.gene83857:intron 35.0%
!!! GTTTTAGTTGAACCTACAAC+TGG - chr7.4:20785910-20785929 MS.gene83857:CDS 35.0%
AAAGCTTAGGTTACGGATCT+TGG - chr7.4:20785849-20785868 MS.gene83857:intron 40.0%
AACACGGGATTAAAAAGGTG+AGG + chr7.4:20786203-20786222 None:intergenic 40.0%
AAGTACCTGAGTGACATCTT+CGG + chr7.4:20785369-20785388 None:intergenic 40.0%
AATGGCAAGGAGATTAGCAT+TGG - chr7.4:20787449-20787468 MS.gene83857:CDS 40.0%
ACACGGGATTAAAAAGGTGA+GGG + chr7.4:20786202-20786221 None:intergenic 40.0%
ACTGCTTGATGAAGTTGTCA+AGG - chr7.4:20787155-20787174 MS.gene83857:intron 40.0%
AGAGATATGGGAGGATACAA+TGG - chr7.4:20786326-20786345 MS.gene83857:intron 40.0%
AGATCCACTTCGAAACTACA+GGG - chr7.4:20786301-20786320 MS.gene83857:intron 40.0%
ATAATCTCAGGAGACAATCC+AGG - chr7.4:20786983-20787002 MS.gene83857:CDS 40.0%
ATTGTATCCTCCCATATCTC+TGG + chr7.4:20786327-20786346 None:intergenic 40.0%
ATTGTCCAATTAGGTGGTTG+GGG - chr7.4:20786940-20786959 MS.gene83857:CDS 40.0%
CAGTTTATAACCCTTCGTTG+CGG + chr7.4:20785965-20785984 None:intergenic 40.0%
CTGCACCAAATGTTCGTAAA+AGG + chr7.4:20786029-20786048 None:intergenic 40.0%
CTGCGATAACTTTAGCAAGA+CGG - chr7.4:20787855-20787874 MS.gene83857:CDS 40.0%
CTGTCGAAACATGTAAGCAT+TGG + chr7.4:20786127-20786146 None:intergenic 40.0%
GAACCTACAACTGGAAATAC+GGG - chr7.4:20785919-20785938 MS.gene83857:CDS 40.0%
GACATCTTCGGCAATGTTAA+CGG + chr7.4:20785357-20785376 None:intergenic 40.0%
GAGATATACCTGAATGTGGT+CGG - chr7.4:20786820-20786839 MS.gene83857:intron 40.0%
GAGATATGGGAGGATACAAT+GGG - chr7.4:20786327-20786346 MS.gene83857:intron 40.0%
GCACTTACACTTCTGATTGA+AGG - chr7.4:20785422-20785441 MS.gene83857:intron 40.0%
GGAGGAAGAATTGTTGTAGA+AGG + chr7.4:20785218-20785237 None:intergenic 40.0%
GTCTGCACAAATACACAATC+AGG + chr7.4:20785889-20785908 None:intergenic 40.0%
TATTTAGTGCTCGAGGAACT+TGG - chr7.4:20786631-20786650 MS.gene83857:intron 40.0%
TGCTGCAAAACTTGAATCCA+TGG - chr7.4:20785601-20785620 MS.gene83857:CDS 40.0%
TTCTGATTGAAGGCTTGTCT+AGG - chr7.4:20785432-20785451 MS.gene83857:intron 40.0%
! AGCATTGGAAGAAGGATTAC+TGG - chr7.4:20787464-20787483 MS.gene83857:CDS 40.0%
! AGGAGATTAGCATTGGAAGA+AGG - chr7.4:20787456-20787475 MS.gene83857:CDS 40.0%
! TTTTGACGAATACGGAGAAG+GGG - chr7.4:20786055-20786074 MS.gene83857:intron 40.0%
!! AAACATGTAAGCATTGGGTG+TGG + chr7.4:20786121-20786140 None:intergenic 40.0%
!! GTTTTGACGAATACGGAGAA+GGG - chr7.4:20786054-20786073 MS.gene83857:intron 40.0%
!! TGTATTGGGGAATTTGTTGC+AGG - chr7.4:20787105-20787124 MS.gene83857:CDS 40.0%
!! TTTACGAACATTTGGTGCAG+AGG - chr7.4:20786029-20786048 MS.gene83857:intron 40.0%
!!! TGTTTTGACGAATACGGAGA+AGG - chr7.4:20786053-20786072 MS.gene83857:intron 40.0%
!!! TTTTTTGAGGGAACTGAAGC+AGG - chr7.4:20787620-20787639 MS.gene83857:intron 40.0%
AAACTACAGGGCCAGAGATA+TGG - chr7.4:20786313-20786332 MS.gene83857:intron 45.0%
AACTACAGGGCCAGAGATAT+GGG - chr7.4:20786314-20786333 MS.gene83857:intron 45.0%
ACAACTGGAAATACGGGACT+TGG - chr7.4:20785925-20785944 MS.gene83857:CDS 45.0%
AGAGAGTGGAGCAATTTCTC+CGG - chr7.4:20785756-20785775 MS.gene83857:intron 45.0%
AGTCCCGTATTTCCAGTTGT+AGG + chr7.4:20785925-20785944 None:intergenic 45.0%
ATGTGTTGTGACCCTTGCAT+GGG - chr7.4:20786672-20786691 MS.gene83857:CDS 45.0%
CAGATCCACTTCGAAACTAC+AGG - chr7.4:20786300-20786319 MS.gene83857:intron 45.0%
CGGTGGAATTGAGTAGTGAA+AGG + chr7.4:20785248-20785267 None:intergenic 45.0%
CTATCCTTGACACTTCTGCA+AGG + chr7.4:20785629-20785648 None:intergenic 45.0%
TTAGCTGATGCTGAAGAGAG+TGG - chr7.4:20785742-20785761 MS.gene83857:intron 45.0%
TTGGTTGCTGCTATTGGAAC+TGG - chr7.4:20786363-20786382 MS.gene83857:intron 45.0%
!! CTTGCAGAAGTGTCAAGGAT+AGG - chr7.4:20785627-20785646 MS.gene83857:CDS 45.0%
!!! TTTTTTCAAAAAAAAAATTT+AGG - chr7.4:20787802-20787821 MS.gene83857:CDS 5.0%
AACAGATGCCGACCACATTC+AGG + chr7.4:20786831-20786850 None:intergenic 50.0%
AATACGGAGAAGGGGCTGAA+AGG - chr7.4:20786063-20786082 MS.gene83857:intron 50.0%
AGAGTGGAGCAATTTCTCCG+GGG - chr7.4:20785758-20785777 MS.gene83857:intron 50.0%
ATACGGAGAAGGGGCTGAAA+GGG - chr7.4:20786064-20786083 MS.gene83857:intron 50.0%
CATGTGTTGTGACCCTTGCA+TGG - chr7.4:20786671-20786690 MS.gene83857:CDS 50.0%
CATTGCCGAAGATGTCACTC+AGG - chr7.4:20785361-20785380 MS.gene83857:intron 50.0%
CCTTCACAACATACCTTCCC+CGG + chr7.4:20785778-20785797 None:intergenic 50.0%
CGGAAATTGTTCGGCGGAAA+CGG + chr7.4:20785277-20785296 None:intergenic 50.0%
CTCTTCTCTACCACCAGAGA+AGG - chr7.4:20785323-20785342 MS.gene83857:intron 50.0%
CTGGTGGTAGAGAAGAGTGA+CGG + chr7.4:20785320-20785339 None:intergenic 50.0%
GACACTTCTGCAAGGTTCCA+TGG + chr7.4:20785621-20785640 None:intergenic 50.0%
GAGAGTGGAGCAATTTCTCC+GGG - chr7.4:20785757-20785776 MS.gene83857:intron 50.0%
GCAAGACGGCCTGAAAATTC+TGG - chr7.4:20787869-20787888 MS.gene83857:CDS 50.0%
GTTGCTGCTATTGGAACTGG+CGG - chr7.4:20786366-20786385 MS.gene83857:intron 50.0%
TCGTTGCGGCAACAAAAGCA+AGG + chr7.4:20785951-20785970 None:intergenic 50.0%
TGAGTAGTGAAAGGACGCGA+AGG + chr7.4:20785239-20785258 None:intergenic 50.0%
TGGCGGTTGCGGAAATTGTT+CGG + chr7.4:20785286-20785305 None:intergenic 50.0%
TTCCACCCCAACCACCTAAT+TGG + chr7.4:20786948-20786967 None:intergenic 50.0%
TTCGCTATCCTCCCATGCAA+GGG + chr7.4:20786686-20786705 None:intergenic 50.0%
TTCGGCGGAAACGGATGTTA+CGG + chr7.4:20785268-20785287 None:intergenic 50.0%
! GCTTTTGTTGCCGCAACGAA+GGG - chr7.4:20785952-20785971 MS.gene83857:intron 50.0%
! TGCTTTTGTTGCCGCAACGA+AGG - chr7.4:20785951-20785970 MS.gene83857:intron 50.0%
!! GGAACCTTGCAGAAGTGTCA+AGG - chr7.4:20785622-20785641 MS.gene83857:CDS 50.0%
AACGGCGTCAAGTCCTTCTC+TGG + chr7.4:20785339-20785358 None:intergenic 55.0%
CGGTTGCGGAAATTGTTCGG+CGG + chr7.4:20785283-20785302 None:intergenic 55.0%
CTGGCCCTGTAGTTTCGAAG+TGG + chr7.4:20786308-20786327 None:intergenic 55.0%
CTTCGCTATCCTCCCATGCA+AGG + chr7.4:20786687-20786706 None:intergenic 55.0%
CTTGCATGGGAGGATAGCGA+AGG - chr7.4:20786685-20786704 MS.gene83857:CDS 55.0%
GGAACTGGCGGCACTATTAC+AGG - chr7.4:20786378-20786397 MS.gene83857:intron 55.0%
GGTGAGGGTCTCATACGAGA+TGG + chr7.4:20786187-20786206 None:intergenic 55.0%
GTAGTGAAAGGACGCGAAGG+AGG + chr7.4:20785236-20785255 None:intergenic 55.0%
GTCCAATTAGGTGGTTGGGG+TGG - chr7.4:20786943-20786962 MS.gene83857:CDS 55.0%
TACAGGGCCAGAGATATGGG+AGG - chr7.4:20786317-20786336 MS.gene83857:intron 55.0%
TACGGAGAAGGGGCTGAAAG+GGG - chr7.4:20786065-20786084 MS.gene83857:intron 55.0%
TGGAGCAATTTCTCCGGGGA+AGG - chr7.4:20785762-20785781 MS.gene83857:intron 55.0%
TGGCGGCACTATTACAGGCA+CGG - chr7.4:20786383-20786402 MS.gene83857:intron 55.0%
TGTTGTGACCCTTGCATGGG+AGG - chr7.4:20786675-20786694 MS.gene83857:CDS 55.0%
! CCGGGGAAGGTATGTTGTGA+AGG - chr7.4:20785775-20785794 MS.gene83857:intron 55.0%
! GAAGAGTGACGGAGTGGAGA+CGG + chr7.4:20785309-20785328 None:intergenic 55.0%
! GGTAGAGAAGAGTGACGGAG+TGG + chr7.4:20785315-20785334 None:intergenic 55.0%
GGCGGAAACGGATGTTACGG+TGG + chr7.4:20785265-20785284 None:intergenic 60.0%
GGCGGCACTATTACAGGCAC+GGG - chr7.4:20786384-20786403 MS.gene83857:intron 60.0%
GGCGTCAAGTCCTTCTCTGG+TGG + chr7.4:20785336-20785355 None:intergenic 60.0%
TGACGGAGTGGAGACGGTGG+CGG + chr7.4:20785303-20785322 None:intergenic 65.0%
! AGTGGAGACGGTGGCGGTTG+CGG + chr7.4:20785297-20785316 None:intergenic 65.0%
! GAGTGACGGAGTGGAGACGG+TGG + chr7.4:20785306-20785325 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 20785170 20787904 20785170 ID=MS.gene83857
chr7.4 mRNA 20785170 20787904 20785170 ID=MS.gene83857.t1;Parent=MS.gene83857
chr7.4 exon 20787692 20787904 20787692 ID=MS.gene83857.t1.exon1;Parent=MS.gene83857.t1
chr7.4 CDS 20787692 20787904 20787692 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20787426 20787535 20787426 ID=MS.gene83857.t1.exon2;Parent=MS.gene83857.t1
chr7.4 CDS 20787426 20787535 20787426 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20787291 20787348 20787291 ID=MS.gene83857.t1.exon3;Parent=MS.gene83857.t1
chr7.4 CDS 20787291 20787348 20787291 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20786904 20787167 20786904 ID=MS.gene83857.t1.exon4;Parent=MS.gene83857.t1
chr7.4 CDS 20786904 20787167 20786904 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20786634 20786771 20786634 ID=MS.gene83857.t1.exon5;Parent=MS.gene83857.t1
chr7.4 CDS 20786634 20786771 20786634 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20786070 20786121 20786070 ID=MS.gene83857.t1.exon6;Parent=MS.gene83857.t1
chr7.4 CDS 20786070 20786121 20786070 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20785898 20785947 20785898 ID=MS.gene83857.t1.exon7;Parent=MS.gene83857.t1
chr7.4 CDS 20785898 20785947 20785898 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20785589 20785648 20785589 ID=MS.gene83857.t1.exon8;Parent=MS.gene83857.t1
chr7.4 CDS 20785589 20785648 20785589 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
chr7.4 exon 20785170 20785250 20785170 ID=MS.gene83857.t1.exon9;Parent=MS.gene83857.t1
chr7.4 CDS 20785170 20785250 20785170 ID=cds.MS.gene83857.t1;Parent=MS.gene83857.t1
Gene Sequence

>MS.gene83857

ATGGCGCTATCATCGTCATCTTCTGCATCATGTTCATGCTTTTCACCTTCTACAACAATTCTTCCTCCTTCGCGTCCTTTCACTACTCAATTCCACCGTAACATCCGTTTCCGCCGAACAATTTCCGCAACCGCCACCGTCTCCACTCCGTCACTCTTCTCTACCACCAGAGAAGGACTTGACGCCGTTAACATTGCCGAAGATGTCACTCAGGTACTTAATTTCGTTTTATTTCAATAATTCATTGTTTCTGCACTTACACTTCTGATTGAAGGCTTGTCTAGGTGTAATTACATTCAATTTATTGAAATTATAATCATATACATTTGAAAATGTTGGATAATGATTGTTAGAAATGAATGAATGCAGTTGCTTGGAAATACACCGATGATATATCTGAATAAAGTTACAGATGGATGTGTAGCAAACGTTGCTGCAAAACTTGAATCCATGGAACCTTGCAGAAGTGTCAAGGATAGGTAATTTCTTTCAAACTCGAATTTAAGTTCCTTTTTTTTATTCATTTGTTAACATATATTACTGTTTAAAATGTCAGAATTGGCTATAGCATGTTAGCTGATGCTGAAGAGAGTGGAGCAATTTCTCCGGGGAAGGTATGTTGTGAAGGATTTTGTGGTATCTAAATATTTATATTATTAAATGATGTAATGATTTTTTTAAAGCTTAGGTTACGGATCTTGGATTTTCTTTAAATTCCTGATTGTGTATTTGTGCAGACTGTTTTAGTTGAACCTACAACTGGAAATACGGGACTTGGCCTTGCTTTTGTTGCCGCAACGAAGGGTTATAAACTGATAGTCACAATGCCTGCTTCTGTTAATATTGAGAGGAGAATCCTTTTACGAACATTTGGTGCAGAGGTTGTTTTGACGAATACGGAGAAGGGGCTGAAAGGGGCTGTTGACAAAGCTGAAGAAATTGTCTATGCCACACCCAATGCTTACATGTTTCGACAGTTTGATAACAGGAATAACACAAAGGTTAATTCTTAATCCATCTCGTATGAGACCCTCACCTTTTTAATCCCGTGTTTTAAATTTTATGGTATGAAGATAGAGTTTACAGCAAAAGTTATGTTACATATTATTAAGATTTATATGCACAAATTACAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACAATGGGTAATGTTGATTTATTGGTTGCTGCTATTGGAACTGGCGGCACTATTACAGGCACGGGACAATATCTGAAAATGATGAACAAAAAAATAAAGGTCTGATTATTCCTTTGATATGCATTATGTTATTTCAAATTGAATCATATACTTGTTGGTCTTCGACACCTAATTCTCTGTATCAAGCCATGAATTCAAATTCCATAACCTTCACCTTATTGGTATTAAAAGAAATTTTGTGCAACTATTATTGAATTTGAATTCCTTAACTTGTGTAATAGATTTCTCATATTTAGTGCTCGAGGAACTTGGCTACATGTTATTGTATTCATGTGTTGTGACCCTTGCATGGGAGGATAGCGAAGGAAAAAAAAAAAAAGGATCCAATAGAAAGGCATAGACCATTAGTATAGCTATTCTAGCATACATTTAATCAAACCATGAATTGACCAGAATGTTTTAGTAAGACTTGAATTGTGAGATATACCTGAATGTGGTCGGCATCTGTTACACTACTATAGTTGTATGCTTCTACATTTAAAGTGAAAGTCGGGTCTTATCTATTCTATTGTCTTCACCTAGCATTAAATTGTCATATATTGTCCAATTAGGTGGTTGGGGTGGAACCTGCAGATAGAAGTATAATCTCAGGAGACAATCCAGGTATGAATCTTTTACGAAAATTATGAATGATTGCCTTTTCTTTTTCTTGCTTTCTCCCCTTAATTTCCACCTGAAACAGATTTTCTTATCAGTTGTTGACTGTATTGGGGAATTTGTTGCAGGTTTCATACCAAGCATTTTGGATATCAAACTGCTTGATGAAGTTGTCAAGGTAAACAGAAAAATTTATTCCCCTTCTGTTGTGAAGTTAGAATTTTATTTCTGGTCATACAATCCTGTTTGAGCTTATTCTTGTTTGCTTTTCATTATTTTAGCTGACACTCTGCAGTTATCTACATATATGTTTTACTTGTTATTCATTCATTTTAGTTATTTAGTCATTGCACTGGTGGCTTTTTTATTTTCTTTGTGCAGTGTTTTTGTTTGCTGTTATCTTTTATCTTGGCATATGAAATTACAGGTTACCAATGTTGAAGCTATTGAAATGGCAAGGAGATTAGCATTGGAAGAAGGATTACTGGTTAGTTATAATTTGAGTTAATTATATCATTTGTTTTATGATTCATAATATAATGAAGATTATGGGCTAAGTTTTCCAATATTTTGGCATTTTAAACTCATCTCTTTTGCATATAAACTGAAGTAGGTTTTTTATTTTTTGAGGGAACTGAAGCAGGTTATCCTCATTTAGTTTTATTTGGTGTATATTGTACATCAAAATTCAATTTAGTTATTTGTTTGGCCTTCATCATTAGTTTTGTATTTTCTGGGCACTACAATGTCACCATAAGCTACAAAGTAACTTGGTTTTTACTTCTATAAAATGTTTTATAGTGTTTTTTCAAAAAAAAAATTTAGGTTGGGATTTCTTCAGGAGCTGCAGCAGCAGCTGCGATAACTTTAGCAAGACGGCCTGAAAATTCTGGAAAACTTATAGCG

Protein sequence

>MS.gene83857.t1

MALSSSSSASCSCFSPSTTILPPSRPFTTQFHRNIRFRRTISATATVSTPSLFSTTREGLDAVNIAEDVTQLLGNTPMIYLNKVTDGCVANVAAKLESMEPCRSVKDRIGYSMLADAEESGAISPGKTVLVEPTTGNTGLGLAFVAATKGYKLIVTMPASVNIERRILLRTFGAEVVLTNTEKGLKGAVDKAEEIVYATPNAYMFRQFDNRNNTKIHFETTGPEIWEDTMGNVDLLVAAIGTGGTITGTGQYLKMMNKKIKVVGVEPADRSIISGDNPGFIPSILDIKLLDEVVKVTNVEAIEMARRLALEEGLLVGISSGAAAAAAITLARRPENSGKLIA