Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84387.t1 | PIA31616.1 | 42.1 | 478 | 213 | 9 | 113 | 532 | 49 | 520 | 1.40E-92 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84387.t1 | Q9LSS3 | 57.1 | 191 | 75 | 2 | 341 | 529 | 46 | 231 | 5.6e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84387.t1 | A0A2G5CK02 | 42.1 | 478 | 213 | 9 | 113 | 532 | 49 | 520 | 9.8e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051594 | MS.gene84387 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene84387 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene84387 | 0.816419 | 5.58E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84387.t1 | MTR_7g092500 | 85.714 | 196 | 25 | 2 | 340 | 532 | 51 | 246 | 5.59e-117 | 345 |
| MS.gene84387.t1 | MTR_7g092500 | 84.896 | 192 | 25 | 2 | 116 | 303 | 52 | 243 | 2.04e-112 | 334 |
| MS.gene84387.t1 | MTR_0262s0030 | 91.111 | 135 | 11 | 1 | 340 | 473 | 51 | 185 | 4.48e-82 | 254 |
| MS.gene84387.t1 | MTR_0262s0030 | 87.218 | 133 | 15 | 1 | 116 | 246 | 52 | 184 | 1.06e-77 | 242 |
| MS.gene84387.t1 | MTR_5g031400 | 57.343 | 143 | 25 | 2 | 161 | 303 | 48 | 154 | 5.70e-44 | 153 |
| MS.gene84387.t1 | MTR_5g031400 | 57.534 | 146 | 25 | 3 | 388 | 532 | 48 | 157 | 5.26e-42 | 148 |
| MS.gene84387.t1 | MTR_4g119190 | 72.727 | 44 | 12 | 0 | 145 | 188 | 23 | 66 | 2.52e-14 | 68.2 |
| MS.gene84387.t1 | MTR_4g119190 | 70.833 | 48 | 13 | 1 | 368 | 414 | 19 | 66 | 3.27e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84387.t1 | AT5G60230 | 57.068 | 191 | 75 | 2 | 341 | 529 | 46 | 231 | 6.03e-66 | 214 |
| MS.gene84387.t1 | AT5G60230 | 50.000 | 230 | 103 | 5 | 80 | 303 | 8 | 231 | 1.54e-63 | 208 |
| MS.gene84387.t1 | AT5G60230 | 57.068 | 191 | 75 | 2 | 341 | 529 | 51 | 236 | 7.20e-66 | 214 |
| MS.gene84387.t1 | AT5G60230 | 50.000 | 230 | 103 | 5 | 80 | 303 | 13 | 236 | 1.62e-63 | 208 |
| MS.gene84387.t1 | AT3G45590 | 54.974 | 191 | 80 | 2 | 341 | 529 | 46 | 232 | 3.78e-62 | 204 |
| MS.gene84387.t1 | AT3G45590 | 50.718 | 209 | 92 | 5 | 104 | 307 | 34 | 236 | 4.52e-61 | 201 |
| MS.gene84387.t1 | AT3G45590 | 54.974 | 191 | 80 | 2 | 341 | 529 | 46 | 232 | 3.78e-62 | 204 |
| MS.gene84387.t1 | AT3G45590 | 50.718 | 209 | 92 | 5 | 104 | 307 | 34 | 236 | 4.52e-61 | 201 |
| MS.gene84387.t1 | AT3G45577 | 49.398 | 83 | 42 | 0 | 345 | 427 | 36 | 118 | 5.96e-18 | 80.5 |
| MS.gene84387.t1 | AT3G45577 | 47.619 | 84 | 41 | 2 | 120 | 201 | 36 | 118 | 6.46e-15 | 71.6 |
Find 111 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAACTCTTCATCATTTA+AGG | 0.063723 | 7.3:+37788046 | None:intergenic |
| ACGCCACAACTCTTCATTTA+AGG | 0.137177 | 7.3:+37786553 | None:intergenic |
| GGCTGAGGTATCACAAATTT+AGG | 0.211038 | 7.3:+37789067 | None:intergenic |
| TTGAAATGCCTCAAGATTAA+TGG | 0.229021 | 7.3:-37788086 | MS.gene84387:CDS |
| ACAAGGGAATGTTTCTTTCT+TGG | 0.237646 | 7.3:+37788010 | None:intergenic |
| GTTAACGTACAAACCTAATA+AGG | 0.279589 | 7.3:+37787764 | None:intergenic |
| CATTGCACAACTCGACTTCT+TGG | 0.283326 | 7.3:-37787801 | MS.gene84387:CDS |
| CTTTGCACAACTCGACTTCT+TGG | 0.291537 | 7.3:-37786311 | MS.gene84387:CDS |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.3:-37786401 | MS.gene84387:CDS |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.3:-37787891 | MS.gene84387:CDS |
| ATACGGGAATGCTTCTTTCT+TGG | 0.324138 | 7.3:+37786520 | None:intergenic |
| CGCCACAACTCTTCATTTAA+GGG | 0.336160 | 7.3:+37786554 | None:intergenic |
| TACGGGAATGCTTCTTTCTT+GGG | 0.351554 | 7.3:+37786521 | None:intergenic |
| TAAATAGAAGATTGAGAGTA+TGG | 0.364355 | 7.3:-37786343 | MS.gene84387:CDS |
| CACAACTCTTCATCATTTAA+GGG | 0.377780 | 7.3:+37788047 | None:intergenic |
| GATCTCTCACGACATTGTTC+TGG | 0.391643 | 7.3:+37787663 | None:intergenic |
| CCGGTGGAAGCATCTTCAAC+AGG | 0.398597 | 7.3:-37789031 | MS.gene84387:CDS |
| ATTAATCTTGAGGCATTTCA+AGG | 0.418645 | 7.3:+37788088 | None:intergenic |
| ACATCCATCTCTCACATTCC+TGG | 0.419960 | 7.3:-37787420 | MS.gene84387:intron |
| GTGAAGTCAGGGGCTCAGTA+TGG | 0.424296 | 7.3:-37787945 | MS.gene84387:CDS |
| GTGAGGTCAGGGTCTCAGTA+TGG | 0.430753 | 7.3:-37786455 | MS.gene84387:CDS |
| GAATAAGCCTTGTAGAAATA+CGG | 0.435605 | 7.3:+37786503 | None:intergenic |
| TTGCTTGATAAAGCGTGCTT+TGG | 0.436287 | 7.3:-37786695 | MS.gene84387:CDS |
| TTGCTTGATAAAGCGTGCTT+TGG | 0.436287 | 7.3:-37788182 | MS.gene84387:CDS |
| ATTAATGACGGTGCTGATAC+TGG | 0.437232 | 7.3:-37786578 | MS.gene84387:CDS |
| GAGAGCGGGAAAGGGAAAGA+AGG | 0.439920 | 7.3:-37789007 | MS.gene84387:CDS |
| GTTAACGTACAAAACTAGTA+AGG | 0.444033 | 7.3:+37786274 | None:intergenic |
| AAAGACTGGGTAGTGAAGTC+AGG | 0.444328 | 7.3:-37787957 | MS.gene84387:CDS |
| CCATTGCTCTAGACTCCATC+TGG | 0.449795 | 7.3:+37786184 | None:intergenic |
| GCTGAGGTATCACAAATTTA+GGG | 0.454504 | 7.3:+37789068 | None:intergenic |
| ACATCCATCTCTCACATTCT+CGG | 0.457288 | 7.3:-37788908 | MS.gene84387:intron |
| TGAGGATAGTTGACAAGGAT+TGG | 0.461572 | 7.3:-37788151 | MS.gene84387:CDS |
| AAGTACGCACAATCTCTAGA+TGG | 0.473667 | 7.3:-37787689 | MS.gene84387:CDS |
| GCTACTTTGCTTAGAGGCGG+CGG | 0.475372 | 7.3:-37787480 | MS.gene84387:CDS |
| TCAACAGGGGAGAGCGGGAA+AGG | 0.480519 | 7.3:-37789016 | MS.gene84387:CDS |
| AACATTCCCTTGTTTCTACA+AGG | 0.481450 | 7.3:-37788000 | MS.gene84387:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.3:-37786423 | MS.gene84387:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.3:-37787913 | MS.gene84387:CDS |
| CATCTTCAACAGGGGAGAGC+GGG | 0.487039 | 7.3:-37787533 | MS.gene84387:intron |
| CATCTTCAACAGGGGAGAGC+GGG | 0.487039 | 7.3:-37789021 | MS.gene84387:CDS |
| CTACCACAAGCTCGGTCTCT+AGG | 0.487113 | 7.3:+37789232 | None:intergenic |
| TAGATGGAAGATTGAGAGAA+TGG | 0.490141 | 7.3:-37787833 | MS.gene84387:CDS |
| TCCACCGGTTGTTGTGAAAA+CGG | 0.492773 | 7.3:+37789046 | None:intergenic |
| GGGAAACGCCTGGGTGGACC+TGG | 0.493018 | 7.3:+37789088 | None:intergenic |
| GAGTTGACAAGGATATGTAT+TGG | 0.493522 | 7.3:-37786658 | MS.gene84387:CDS |
| CTCAGTGATATTGTGAGTCC+AGG | 0.493900 | 7.3:-37789106 | MS.gene84387:CDS |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.3:+37786411 | None:intergenic |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.3:+37787901 | None:intergenic |
| GCTACTTTGCTTAGCGGCAA+CGG | 0.496122 | 7.3:-37788968 | MS.gene84387:CDS |
| GACAATGATGGTGATCTAGA+TGG | 0.497076 | 7.3:-37787849 | MS.gene84387:CDS |
| AACGGAGATAGAACTATCAT+TGG | 0.502621 | 7.3:-37788950 | MS.gene84387:CDS |
| AATAAGCCTTGTAGAAATAC+GGG | 0.510085 | 7.3:+37786504 | None:intergenic |
| GGCGGAGATAGAACTATCAT+TGG | 0.511446 | 7.3:-37787462 | MS.gene84387:CDS |
| CAACAGGGGAGAGCGGGAAA+AGG | 0.513805 | 7.3:-37787527 | MS.gene84387:intron |
| CAATAAGCCTTGTAGAAACA+AGG | 0.516266 | 7.3:+37787993 | None:intergenic |
| CAACAGGGGAGAGCGGGAAA+GGG | 0.520595 | 7.3:-37789015 | MS.gene84387:CDS |
| GGGAAAGGGAAAGAAGGTAG+AGG | 0.523326 | 7.3:-37789001 | MS.gene84387:CDS |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.3:-37786417 | MS.gene84387:CDS |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.3:-37787907 | MS.gene84387:CDS |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.3:+37786404 | None:intergenic |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.3:+37787894 | None:intergenic |
| GGAGATTGTGCGTTCTTCGA+TGG | 0.526909 | 7.3:+37786205 | None:intergenic |
| CACAAATTTAGGGAAACGCC+TGG | 0.529066 | 7.3:+37789078 | None:intergenic |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.3:-37786418 | MS.gene84387:CDS |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.3:-37787908 | MS.gene84387:CDS |
| CCTGTTGAAGATGCTTCCAC+CGG | 0.541455 | 7.3:+37789031 | None:intergenic |
| GTATAGTTTGTCAAACATAA+CGG | 0.545435 | 7.3:+37787717 | None:intergenic |
| AGCATTCCCGTATTTCTACA+AGG | 0.551364 | 7.3:-37786510 | MS.gene84387:CDS |
| GGCATTTCAAGGAATAACAT+AGG | 0.552981 | 7.3:+37788099 | None:intergenic |
| TAGATAGAATGCTTCCTCCA+TGG | 0.562337 | 7.3:+37786625 | None:intergenic |
| TCCTTGTCAACTCTCCTCAC+AGG | 0.573389 | 7.3:+37786668 | None:intergenic |
| CAGCACCGTCATTAATCTTG+AGG | 0.574856 | 7.3:+37786585 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.575408 | 7.3:+37788155 | None:intergenic |
| AAGACTGGGTAGTGAAGTCA+GGG | 0.585343 | 7.3:-37787956 | MS.gene84387:CDS |
| CGGTGGAAGCATCTTCAACA+GGG | 0.588422 | 7.3:-37789030 | MS.gene84387:CDS |
| TACTCTCACTACCACAAGCT+CGG | 0.589035 | 7.3:+37789224 | None:intergenic |
| TAGGTAGAATGCTTCCTCCT+CGG | 0.589972 | 7.3:+37788118 | None:intergenic |
| ACCTGTGAGGAGAGTTGACA+AGG | 0.594741 | 7.3:-37786669 | MS.gene84387:CDS |
| GTATTGGTTTCAATTAACCA+TGG | 0.594762 | 7.3:-37786642 | MS.gene84387:CDS |
| AAAACTGGGTAGTGAGGTCA+GGG | 0.603360 | 7.3:-37786466 | MS.gene84387:CDS |
| GAGCACCTCCATTAATCTTG+AGG | 0.609670 | 7.3:+37788078 | None:intergenic |
| CCAGATGGAGTCTAGAGCAA+TGG | 0.613679 | 7.3:-37786184 | MS.gene84387:CDS |
| GGTTGTTGTGAAAACGGCTG+AGG | 0.615492 | 7.3:+37789052 | None:intergenic |
| GCATCTTCAACAGGGGAGAG+CGG | 0.616909 | 7.3:-37787534 | MS.gene84387:intron |
| GCATCTTCAACAGGGGAGAG+CGG | 0.616909 | 7.3:-37789022 | MS.gene84387:CDS |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.3:-37786371 | MS.gene84387:CDS |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.3:-37787861 | MS.gene84387:CDS |
| ATGCCTAGAGACCGAGCTTG+TGG | 0.622108 | 7.3:-37789235 | MS.gene84387:CDS |
| GGGAAAAGGAAAGAAGCTAA+AGG | 0.622115 | 7.3:-37787513 | MS.gene84387:CDS |
| AAATGCCTCAAGATTAATGA+CGG | 0.637181 | 7.3:-37786590 | MS.gene84387:CDS |
| TTTAATAAGAATCTGCACGA+AGG | 0.637492 | 7.3:+37789166 | None:intergenic |
| GTCCCTTAAATGAAGAGTTG+TGG | 0.637860 | 7.3:-37786556 | MS.gene84387:CDS |
| AATAAGCCTTGTAGAAACAA+GGG | 0.638392 | 7.3:+37787994 | None:intergenic |
| TGTACCAGGAATGTGAGAGA+TGG | 0.638773 | 7.3:+37787416 | None:intergenic |
| TTGTGAGTCCAGGTCCACCC+AGG | 0.639971 | 7.3:-37789096 | MS.gene84387:CDS |
| GGGGCTACTTTGCTTAGAGG+CGG | 0.641013 | 7.3:-37787483 | MS.gene84387:CDS |
| ACCTGTGAGGATAGTTGACA+AGG | 0.642072 | 7.3:-37788156 | MS.gene84387:CDS |
| TGTACCGAGAATGTGAGAGA+TGG | 0.651470 | 7.3:+37788904 | None:intergenic |
| ACAAATTTAGGGAAACGCCT+GGG | 0.658451 | 7.3:+37789079 | None:intergenic |
| CGTGCTTTGGTCGACCTGTG+AGG | 0.661190 | 7.3:-37786682 | MS.gene84387:CDS |
| CGTGCTTTGGTCGACCTGTG+AGG | 0.662108 | 7.3:-37788169 | MS.gene84387:CDS |
| AAGAACGCACAATCTCCAGA+TGG | 0.663409 | 7.3:-37786199 | MS.gene84387:CDS |
| TTGGTTTCAGTTAACCGAGG+AGG | 0.666538 | 7.3:-37788132 | MS.gene84387:CDS |
| AAATGCCTCAAGATTAATGG+AGG | 0.668756 | 7.3:-37788083 | MS.gene84387:CDS |
| GGTGGAAGCATCTTCAACAG+GGG | 0.674391 | 7.3:-37789029 | MS.gene84387:CDS |
| GGATTGGTTTCAGTTAACCG+AGG | 0.687289 | 7.3:-37788135 | MS.gene84387:CDS |
| TTGGTTTCAATTAACCATGG+AGG | 0.690068 | 7.3:-37786639 | MS.gene84387:CDS |
| AATTTAGGGAAACGCCTGGG+TGG | 0.696344 | 7.3:+37789082 | None:intergenic |
| CCTTAAATGATGAAGAGTTG+TGG | 0.708210 | 7.3:-37788046 | MS.gene84387:CDS |
| CTGGACTCACAATATCACTG+AGG | 0.781656 | 7.3:+37789107 | None:intergenic |
| AGACTGGGTAGTGAAGTCAG+GGG | 0.803024 | 7.3:-37787955 | MS.gene84387:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGAAAGAAACAAAA+CGG | + | chr7.3:37786799-37786818 | None:intergenic | 15.0% |
| !! | ATACTTCTAATATAAATAGA+TGG | + | chr7.3:37786548-37786567 | None:intergenic | 15.0% |
| !! | ATATACCCTTAATATATAAA+AGG | + | chr7.3:37786833-37786852 | None:intergenic | 15.0% |
| !!! | ATTGTTTGACTTTTTTTATA+AGG | - | chr7.3:37787012-37787031 | MS.gene84387:intron | 15.0% |
| !!! | TATCTCCTTTTATATATTAA+GGG | - | chr7.3:37786825-37786844 | MS.gene84387:intron | 15.0% |
| !!! | TTATCTCCTTTTATATATTA+AGG | - | chr7.3:37786824-37786843 | MS.gene84387:intron | 15.0% |
| !! | AAAAGATGCAAAATCAAAAA+AGG | - | chr7.3:37787059-37787078 | MS.gene84387:intron | 20.0% |
| !! | ATACTTCTAATACAAATAGA+TGG | + | chr7.3:37788036-37788055 | None:intergenic | 20.0% |
| !! | TTAGCTAAATTAAATACTTG+TGG | - | chr7.3:37788631-37788650 | MS.gene84387:intron | 20.0% |
| !!! | ACTTTTTTTATAAGGTCAAA+TGG | - | chr7.3:37787020-37787039 | MS.gene84387:intron | 20.0% |
| !!! | GTTTTGTTTCTTTCAAATTT+TGG | - | chr7.3:37786798-37786817 | MS.gene84387:intron | 20.0% |
| ! | AAAGAAGCTAAAGGAAAAAA+GGG | - | chr7.3:37787897-37787916 | MS.gene84387:CDS | 25.0% |
| ! | GATTGAGCTTTACTAAATAA+AGG | - | chr7.3:37788459-37788478 | MS.gene84387:intron | 25.0% |
| ! | TAAATAGAAGATTGAGAGTA+TGG | - | chr7.3:37789058-37789077 | MS.gene84387:CDS | 25.0% |
| ! | TGTGATATAATCTTTGACAT+GGG | + | chr7.3:37788598-37788617 | None:intergenic | 25.0% |
| ! | TTAGTTCAATCAAATACTTG+TGG | - | chr7.3:37787144-37787163 | MS.gene84387:intron | 25.0% |
| ! | TTGTGATATAATCTTTGACA+TGG | + | chr7.3:37788599-37788618 | None:intergenic | 25.0% |
| !! | GTATAGTTTGTCAAACATAA+CGG | + | chr7.3:37787687-37787706 | None:intergenic | 25.0% |
| !! | GTTTTGTACGTTAACAAAAA+TGG | - | chr7.3:37789135-37789154 | MS.gene84387:CDS | 25.0% |
| !!! | GCACAATTTTTTTGTCAATA+CGG | + | chr7.3:37787763-37787782 | None:intergenic | 25.0% |
| AAATGCCTCAAGATTAATGA+CGG | - | chr7.3:37788811-37788830 | MS.gene84387:intron | 30.0% | |
| AAGAAGCTAAAGGAAAAAAG+GGG | - | chr7.3:37787898-37787917 | MS.gene84387:CDS | 30.0% | |
| AATGTATCTAATCAGTGATC+AGG | + | chr7.3:37786666-37786685 | None:intergenic | 30.0% | |
| AGGTCAAATTATGAAGAGTA+TGG | + | chr7.3:37786646-37786665 | None:intergenic | 30.0% | |
| AGTGTTGCAAAAACCTTATT+AGG | - | chr7.3:37787624-37787643 | MS.gene84387:intron | 30.0% | |
| ATTCAATTGTTTCGCTCTTA+TGG | - | chr7.3:37786735-37786754 | MS.gene84387:intron | 30.0% | |
| CACAACTCTTCATCATTTAA+GGG | + | chr7.3:37787357-37787376 | None:intergenic | 30.0% | |
| CCAAATTAATCAAGACACAA+AGG | + | chr7.3:37786925-37786944 | None:intergenic | 30.0% | |
| CCTTTGTGTCTTGATTAATT+TGG | - | chr7.3:37786922-37786941 | MS.gene84387:intron | 30.0% | |
| GAAACAAAACAGAGAAAAGT+TGG | + | chr7.3:37788275-37788294 | None:intergenic | 30.0% | |
| GAAAGAAGCTAAAGGAAAAA+AGG | - | chr7.3:37787896-37787915 | MS.gene84387:CDS | 30.0% | |
| GATTGAGCTTTACTAAATCA+AGG | - | chr7.3:37786972-37786991 | MS.gene84387:intron | 30.0% | |
| GGTTTGTACGTTAACAAAAA+TGG | - | chr7.3:37787645-37787664 | MS.gene84387:intron | 30.0% | |
| GTTAACGTACAAAACTAGTA+AGG | + | chr7.3:37789130-37789149 | None:intergenic | 30.0% | |
| GTTAACGTACAAACCTAATA+AGG | + | chr7.3:37787640-37787659 | None:intergenic | 30.0% | |
| TGAGCTTTACTAAATAAAGG+TGG | - | chr7.3:37788462-37788481 | MS.gene84387:intron | 30.0% | |
| TGTGATACAATCTTTGACAT+GGG | + | chr7.3:37787111-37787130 | None:intergenic | 30.0% | |
| TTGAAATGCCTCAAGATTAA+TGG | - | chr7.3:37787315-37787334 | MS.gene84387:intron | 30.0% | |
| TTGTGATACAATCTTTGACA+TGG | + | chr7.3:37787112-37787131 | None:intergenic | 30.0% | |
| TTTAATAAGAATCTGCACGA+AGG | + | chr7.3:37786238-37786257 | None:intergenic | 30.0% | |
| ! | AATAAGCCTTGTAGAAACAA+GGG | + | chr7.3:37787410-37787429 | None:intergenic | 30.0% |
| ! | AATAAGCCTTGTAGAAATAC+GGG | + | chr7.3:37788900-37788919 | None:intergenic | 30.0% |
| ! | ATTAATCTTGAGGCATTTCA+AGG | + | chr7.3:37787316-37787335 | None:intergenic | 30.0% |
| ! | GAATAAGCCTTGTAGAAATA+CGG | + | chr7.3:37788901-37788920 | None:intergenic | 30.0% |
| ! | TCATTTTCGAATGAAAGACT+GGG | - | chr7.3:37787431-37787450 | MS.gene84387:CDS | 30.0% |
| ! | TTACTAAATAAAGGTGGACT+TGG | - | chr7.3:37788468-37788487 | MS.gene84387:intron | 30.0% |
| !! | GTATTGGTTTCAATTAACCA+TGG | - | chr7.3:37788759-37788778 | MS.gene84387:intron | 30.0% |
| AAAGAAGGTAGAGGAAAAAC+GGG | - | chr7.3:37786409-37786428 | MS.gene84387:CDS | 35.0% | |
| AAATGCCTCAAGATTAATGG+AGG | - | chr7.3:37787318-37787337 | MS.gene84387:intron | 35.0% | |
| AACGGAGATAGAACTATCAT+TGG | - | chr7.3:37786451-37786470 | MS.gene84387:CDS | 35.0% | |
| AATGTCTCTAATCAGTGATC+AGG | + | chr7.3:37788154-37788173 | None:intergenic | 35.0% | |
| ACAAGGGAATGTTTCTTTCT+TGG | + | chr7.3:37787394-37787413 | None:intergenic | 35.0% | |
| AGAAGCTAAAGGAAAAAAGG+GGG | - | chr7.3:37787899-37787918 | MS.gene84387:CDS | 35.0% | |
| AGGTCAAATTATGAAGAGTG+TGG | + | chr7.3:37788134-37788153 | None:intergenic | 35.0% | |
| ATCAAACACTTTACGTGCAA+AGG | + | chr7.3:37786576-37786595 | None:intergenic | 35.0% | |
| CAAAGGCCACATAAGAATTA+CGG | + | chr7.3:37786908-37786927 | None:intergenic | 35.0% | |
| CCACAACTCTTCATCATTTA+AGG | + | chr7.3:37787358-37787377 | None:intergenic | 35.0% | |
| CCACATAAGAATTACGGATT+AGG | + | chr7.3:37786902-37786921 | None:intergenic | 35.0% | |
| CCTAATCCGTAATTCTTATG+TGG | - | chr7.3:37786899-37786918 | MS.gene84387:intron | 35.0% | |
| CCTTAAATGATGAAGAGTTG+TGG | - | chr7.3:37787355-37787374 | MS.gene84387:intron | 35.0% | |
| GAAAAAGAGAAGATTGTACC+AGG | + | chr7.3:37786514-37786533 | None:intergenic | 35.0% | |
| GAAACAAAACGGAGAAAAGT+TGG | + | chr7.3:37786788-37786807 | None:intergenic | 35.0% | |
| GAAAGAAGGTAGAGGAAAAA+CGG | - | chr7.3:37786408-37786427 | MS.gene84387:CDS | 35.0% | |
| GAGTTGACAAGGATATGTAT+TGG | - | chr7.3:37788743-37788762 | MS.gene84387:intron | 35.0% | |
| GCAGAGGTTTCACAAATTTA+GGG | + | chr7.3:37787824-37787843 | None:intergenic | 35.0% | |
| GGCATTTCAAGGAATAACAT+AGG | + | chr7.3:37787305-37787324 | None:intergenic | 35.0% | |
| GTTCTATCACATGACAATGA+TGG | - | chr7.3:37787540-37787559 | MS.gene84387:intron | 35.0% | |
| TAGATGGAAGATTGAGAGAA+TGG | - | chr7.3:37787568-37787587 | MS.gene84387:intron | 35.0% | |
| TATTGTTTATCGCCATCATC+CGG | - | chr7.3:37787488-37787507 | MS.gene84387:CDS | 35.0% | |
| TCACCTTCGAATGAAAAACT+GGG | - | chr7.3:37788921-37788940 | MS.gene84387:CDS | 35.0% | |
| TGAGCTTTACTAAATCAAGG+TGG | - | chr7.3:37786975-37786994 | MS.gene84387:intron | 35.0% | |
| TTGGTTTCAATTAACCATGG+AGG | - | chr7.3:37788762-37788781 | MS.gene84387:intron | 35.0% | |
| ! | AACAGAGAAAAGTTGGTTGA+TGG | + | chr7.3:37788268-37788287 | None:intergenic | 35.0% |
| ! | CAATAAGCCTTGTAGAAACA+AGG | + | chr7.3:37787411-37787430 | None:intergenic | 35.0% |
| ! | GCTGAGGTATCACAAATTTA+GGG | + | chr7.3:37786336-37786355 | None:intergenic | 35.0% |
| ! | TTACTAAATCAAGGTGGACT+TGG | - | chr7.3:37786981-37787000 | MS.gene84387:intron | 35.0% |
| !! | AACATTCCCTTGTTTCTACA+AGG | - | chr7.3:37787401-37787420 | MS.gene84387:intron | 35.0% |
| !! | GTCATTTTCGAATGAAAGAC+TGG | - | chr7.3:37787430-37787449 | MS.gene84387:CDS | 35.0% |
| !!! | CAAGTTTTTTTCAACACGAG+AGG | - | chr7.3:37786874-37786893 | MS.gene84387:intron | 35.0% |
| AAGAAGGTAGAGGAAAAACG+GGG | - | chr7.3:37786410-37786429 | MS.gene84387:CDS | 40.0% | |
| AAGTACGCACAATCTCTAGA+TGG | - | chr7.3:37787712-37787731 | MS.gene84387:CDS | 40.0% | |
| ACAAATTTAGGGAAACGCCT+GGG | + | chr7.3:37786325-37786344 | None:intergenic | 40.0% | |
| ACATCCATCTCTCACATTCT+CGG | - | chr7.3:37786493-37786512 | MS.gene84387:CDS | 40.0% | |
| ACGCCACAACTCTTCATTTA+AGG | + | chr7.3:37788851-37788870 | None:intergenic | 40.0% | |
| AGCTCAATCAAAATAGCCAC+AGG | + | chr7.3:37788448-37788467 | None:intergenic | 40.0% | |
| AGCTCAATCAAAGAAGTCAC+AGG | + | chr7.3:37786961-37786980 | None:intergenic | 40.0% | |
| ATACGGGAATGCTTCTTTCT+TGG | + | chr7.3:37788884-37788903 | None:intergenic | 40.0% | |
| CGCCACAACTCTTCATTTAA+GGG | + | chr7.3:37788850-37788869 | None:intergenic | 40.0% | |
| CTCACCTTCGAATGAAAAAC+TGG | - | chr7.3:37788920-37788939 | MS.gene84387:CDS | 40.0% | |
| CTCGTGTTGAAAAAAGCTTG+AGG | + | chr7.3:37788361-37788380 | None:intergenic | 40.0% | |
| CTCTGATAACTGTGTACACT+TGG | - | chr7.3:37787173-37787192 | MS.gene84387:intron | 40.0% | |
| GAATGAAAAACTGGGTAGTG+AGG | - | chr7.3:37788929-37788948 | MS.gene84387:CDS | 40.0% | |
| GGCAGAGGTTTCACAAATTT+AGG | + | chr7.3:37787825-37787844 | None:intergenic | 40.0% | |
| GGGAAAAGGAAAGAAGCTAA+AGG | - | chr7.3:37787888-37787907 | MS.gene84387:CDS | 40.0% | |
| GTCCCTTAAATGAAGAGTTG+TGG | - | chr7.3:37788845-37788864 | MS.gene84387:intron | 40.0% | |
| TACGGGAATGCTTCTTTCTT+GGG | + | chr7.3:37788883-37788902 | None:intergenic | 40.0% | |
| TAGATAGAATGCTTCCTCCA+TGG | + | chr7.3:37788779-37788798 | None:intergenic | 40.0% | |
| TGAGGATAGTTGACAAGGAT+TGG | - | chr7.3:37787250-37787269 | MS.gene84387:intron | 40.0% | |
| TTGCTTGATAAAGCGTGCTT+TGG | - | chr7.3:37787219-37787238 | MS.gene84387:intron | 40.0% | |
| ! | AACGGAGAAAAGTTGGTTGA+TGG | + | chr7.3:37786781-37786800 | None:intergenic | 40.0% |
| ! | AGCATTCCCGTATTTCTACA+AGG | - | chr7.3:37788891-37788910 | MS.gene84387:intron | 40.0% |
| ! | CTACCCAGTTTTTCATTCGA+AGG | + | chr7.3:37788927-37788946 | None:intergenic | 40.0% |
| ! | GACAATGATGGTGATCTAGA+TGG | - | chr7.3:37787552-37787571 | MS.gene84387:intron | 40.0% |
| ! | GCATCTTTTCCTTTCCATCT+TGG | + | chr7.3:37787048-37787067 | None:intergenic | 40.0% |
| ! | GGCTGAGGTATCACAAATTT+AGG | + | chr7.3:37786337-37786356 | None:intergenic | 40.0% |
| ! | TTGATGGTTGACACTGAAAC+TGG | + | chr7.3:37786765-37786784 | None:intergenic | 40.0% |
| !! | ATTAATGACGGTGCTGATAC+TGG | - | chr7.3:37788823-37788842 | MS.gene84387:intron | 40.0% |
| !! | TGGATCATTTTAGTAGCCTG+TGG | - | chr7.3:37786942-37786961 | MS.gene84387:intron | 40.0% |
| !!! | CAAGCTTTTTTCAACACGAG+AGG | - | chr7.3:37788361-37788380 | MS.gene84387:intron | 40.0% |
| AAAAACTGGGTAGTGAGGTC+AGG | - | chr7.3:37788934-37788953 | MS.gene84387:CDS | 45.0% | |
| AAAACTGGGTAGTGAGGTCA+GGG | - | chr7.3:37788935-37788954 | MS.gene84387:CDS | 45.0% | |
| AAAGACTGGGTAGTGAAGTC+AGG | - | chr7.3:37787444-37787463 | MS.gene84387:CDS | 45.0% | |
| AAGAACGCACAATCTCCAGA+TGG | - | chr7.3:37789202-37789221 | MS.gene84387:CDS | 45.0% | |
| AAGACTGGGTAGTGAAGTCA+GGG | - | chr7.3:37787445-37787464 | MS.gene84387:CDS | 45.0% | |
| AAGGTCAAATGGCACCAAGA+TGG | - | chr7.3:37787031-37787050 | MS.gene84387:intron | 45.0% | |
| ACATCCATCTCTCACATTCC+TGG | - | chr7.3:37787981-37788000 | MS.gene84387:CDS | 45.0% | |
| ACCTGTGAGGATAGTTGACA+AGG | - | chr7.3:37787245-37787264 | MS.gene84387:intron | 45.0% | |
| AGAAGGTAGAGGAAAAACGG+GGG | - | chr7.3:37786411-37786430 | MS.gene84387:CDS | 45.0% | |
| CAAATGGCACCAAGATGGAA+AGG | - | chr7.3:37787036-37787055 | MS.gene84387:intron | 45.0% | |
| CACAAATTTAGGGAAACGCC+TGG | + | chr7.3:37786326-37786345 | None:intergenic | 45.0% | |
| CAGCACCGTCATTAATCTTG+AGG | + | chr7.3:37788819-37788838 | None:intergenic | 45.0% | |
| CATTGCACAACTCGACTTCT+TGG | - | chr7.3:37787600-37787619 | MS.gene84387:intron | 45.0% | |
| CTCAGTGATATTGTGAGTCC+AGG | - | chr7.3:37786295-37786314 | MS.gene84387:CDS | 45.0% | |
| CTGGACTCACAATATCACTG+AGG | + | chr7.3:37786297-37786316 | None:intergenic | 45.0% | |
| CTTTGCACAACTCGACTTCT+TGG | - | chr7.3:37789090-37789109 | MS.gene84387:CDS | 45.0% | |
| GAGCACCTCCATTAATCTTG+AGG | + | chr7.3:37787326-37787345 | None:intergenic | 45.0% | |
| GATCTCTCACGACATTGTTC+TGG | + | chr7.3:37787741-37787760 | None:intergenic | 45.0% | |
| GGCGGAGATAGAACTATCAT+TGG | - | chr7.3:37787939-37787958 | MS.gene84387:CDS | 45.0% | |
| TACTCTCACTACCACAAGCT+CGG | + | chr7.3:37786180-37786199 | None:intergenic | 45.0% | |
| TAGGTAGAATGCTTCCTCCT+CGG | + | chr7.3:37787286-37787305 | None:intergenic | 45.0% | |
| TCCTTGTCAACTATCCTCAC+AGG | + | chr7.3:37787249-37787268 | None:intergenic | 45.0% | |
| TGTACCAGGAATGTGAGAGA+TGG | + | chr7.3:37787988-37788007 | None:intergenic | 45.0% | |
| TGTACCGAGAATGTGAGAGA+TGG | + | chr7.3:37786500-37786519 | None:intergenic | 45.0% | |
| TTGGTTTCAGTTAACCGAGG+AGG | - | chr7.3:37787269-37787288 | MS.gene84387:intron | 45.0% | |
| ! | TCCACCGGTTGTTGTGAAAA+CGG | + | chr7.3:37786358-37786377 | None:intergenic | 45.0% |
| !! | GGATTGGTTTCAGTTAACCG+AGG | - | chr7.3:37787266-37787285 | MS.gene84387:intron | 45.0% |
| !! | TCAGCCGTTTTCACAACAAC+CGG | - | chr7.3:37786351-37786370 | MS.gene84387:CDS | 45.0% |
| !!! | TCTGCCGTTTTCACAACAAC+CGG | - | chr7.3:37787839-37787858 | MS.gene84387:CDS | 45.0% |
| AATTTAGGGAAACGCCTGGG+CGG | + | chr7.3:37786322-37786341 | None:intergenic | 50.0% | |
| AATTTAGGGAAACGCCTGGG+TGG | + | chr7.3:37786322-37786341 | None:intergenic | 50.0% | |
| ACCTGTGAGGAGAGTTGACA+AGG | - | chr7.3:37788732-37788751 | MS.gene84387:intron | 50.0% | |
| AGACTGGGTAGTGAAGTCAG+GGG | - | chr7.3:37787446-37787465 | MS.gene84387:CDS | 50.0% | |
| CCTGTTGAAGATGCTTCCAC+CGG | + | chr7.3:37786373-37786392 | None:intergenic | 50.0% | |
| GGAGATTGTGCGTTCTTCGA+TGG | + | chr7.3:37789199-37789218 | None:intergenic | 50.0% | |
| GGGAAAGGGAAAGAAGGTAG+AGG | - | chr7.3:37786400-37786419 | MS.gene84387:CDS | 50.0% | |
| GGTTGTTGTGAAAACGGCAG+AGG | + | chr7.3:37787840-37787859 | None:intergenic | 50.0% | |
| GGTTGTTGTGAAAACGGCTG+AGG | + | chr7.3:37786352-37786371 | None:intergenic | 50.0% | |
| TCCTTGTCAACTCTCCTCAC+AGG | + | chr7.3:37788736-37788755 | None:intergenic | 50.0% | |
| TTTATCGCCATCATCCGGCT+CGG | - | chr7.3:37787493-37787512 | MS.gene84387:CDS | 50.0% | |
| ! | AAGGGGGCTACTTTGCTTAG+AGG | - | chr7.3:37787915-37787934 | MS.gene84387:CDS | 50.0% |
| ! | CCAGATGGAGTCTAGAGCAA+TGG | - | chr7.3:37789217-37789236 | MS.gene84387:CDS | 50.0% |
| ! | CCATTGCTCTAGACTCCATC+TGG | + | chr7.3:37789220-37789239 | None:intergenic | 50.0% |
| ! | GCTACTTTGCTTAGCGGCAA+CGG | - | chr7.3:37786433-37786452 | MS.gene84387:CDS | 50.0% |
| !! | CGGTGGAAGCATCTTCAACA+GGG | - | chr7.3:37786371-37786390 | MS.gene84387:CDS | 50.0% |
| !! | GGTGGAAGCATCTTCAACAG+GGG | - | chr7.3:37786372-37786391 | MS.gene84387:CDS | 50.0% |
| ATGCCTAGAGACCGAGCTTG+TGG | - | chr7.3:37786166-37786185 | MS.gene84387:CDS | 55.0% | |
| CATCTTCAACAGGGGAGAGC+GGG | - | chr7.3:37786380-37786399 | MS.gene84387:CDS | 55.0% | |
| CTACCACAAGCTCGGTCTCT+AGG | + | chr7.3:37786172-37786191 | None:intergenic | 55.0% | |
| GAGAGCGGGAAAGGGAAAGA+AGG | - | chr7.3:37786394-37786413 | MS.gene84387:CDS | 55.0% | |
| GCATCTTCAACAGGGGAGAG+CGG | - | chr7.3:37786379-37786398 | MS.gene84387:CDS | 55.0% | |
| GCTCGGGTGCATTCTGAGTA+TGG | - | chr7.3:37787510-37787529 | MS.gene84387:CDS | 55.0% | |
| GTGAAGTCAGGGGCTCAGTA+TGG | - | chr7.3:37787456-37787475 | MS.gene84387:CDS | 55.0% | |
| GTGAGGTCAGGGTCTCAGTA+TGG | - | chr7.3:37788946-37788965 | MS.gene84387:CDS | 55.0% | |
| TACTCAGAATGCACCCGAGC+CGG | + | chr7.3:37787510-37787529 | None:intergenic | 55.0% | |
| TTATCGCCATCATCCGGCTC+GGG | - | chr7.3:37787494-37787513 | MS.gene84387:CDS | 55.0% | |
| ! | ACGGGGGCTACTTTGCTTAG+CGG | - | chr7.3:37786427-37786446 | MS.gene84387:CDS | 55.0% |
| ! | GCTACTTTGCTTAGAGGCGG+CGG | - | chr7.3:37787921-37787940 | MS.gene84387:CDS | 55.0% |
| ! | GGGGCTACTTTGCTTAGAGG+CGG | - | chr7.3:37787918-37787937 | MS.gene84387:CDS | 55.0% |
| !! | CCGGTGGAAGCATCTTCAAC+AGG | - | chr7.3:37786370-37786389 | MS.gene84387:CDS | 55.0% |
| !! | GCCGTTTTCACAACAACCGG+TGG | - | chr7.3:37786354-37786373 | MS.gene84387:CDS | 55.0% |
| AATGCACCCGAGCCGGATGA+TGG | + | chr7.3:37787503-37787522 | None:intergenic | 60.0% | |
| CAACAGGGGAGAGCGGGAAA+AGG | - | chr7.3:37786386-37786405 | MS.gene84387:CDS | 60.0% | |
| CAACAGGGGAGAGCGGGAAA+GGG | - | chr7.3:37786386-37786405 | MS.gene84387:CDS | 60.0% | |
| CGTGCTTTGGTCGACCTGTG+AGG | - | chr7.3:37787232-37787251 | MS.gene84387:intron | 60.0% | |
| TCAACAGGGGAGAGCGGGAA+AGG | - | chr7.3:37786385-37786404 | MS.gene84387:CDS | 60.0% | |
| TTGTGAGTCCAGGTCCACCC+AGG | - | chr7.3:37786305-37786324 | MS.gene84387:CDS | 60.0% | |
| TTGTGAGTCCAGGTCCGCCC+AGG | - | chr7.3:37787793-37787812 | MS.gene84387:CDS | 65.0% | |
| GGGAAACGCCTGGGTGGACC+TGG | + | chr7.3:37786316-37786335 | None:intergenic | 70.0% | |
| GGGAAACGCCTGGGCGGACC+TGG | + | chr7.3:37787804-37787823 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 37786166 | 37789257 | 37786166 | ID=MS.gene84387 |
| chr7.3 | mRNA | 37786166 | 37789257 | 37786166 | ID=MS.gene84387.t1;Parent=MS.gene84387 |
| chr7.3 | exon | 37788909 | 37789257 | 37788909 | ID=MS.gene84387.t1.exon1;Parent=MS.gene84387.t1 |
| chr7.3 | CDS | 37788909 | 37789257 | 37788909 | ID=cds.MS.gene84387.t1;Parent=MS.gene84387.t1 |
| chr7.3 | exon | 37787673 | 37788227 | 37787673 | ID=MS.gene84387.t1.exon2;Parent=MS.gene84387.t1 |
| chr7.3 | CDS | 37787673 | 37788227 | 37787673 | ID=cds.MS.gene84387.t1;Parent=MS.gene84387.t1 |
| chr7.3 | exon | 37787421 | 37787543 | 37787421 | ID=MS.gene84387.t1.exon3;Parent=MS.gene84387.t1 |
| chr7.3 | CDS | 37787421 | 37787543 | 37787421 | ID=cds.MS.gene84387.t1;Parent=MS.gene84387.t1 |
| chr7.3 | exon | 37786166 | 37786737 | 37786166 | ID=MS.gene84387.t1.exon4;Parent=MS.gene84387.t1 |
| chr7.3 | CDS | 37786166 | 37786737 | 37786166 | ID=cds.MS.gene84387.t1;Parent=MS.gene84387.t1 |
| Gene Sequence |
| Protein sequence |
