Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84517.t1 | XP_003600455.1 | 77.1 | 284 | 62 | 1 | 1 | 284 | 1 | 281 | 7.00E-120 | 440.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84517.t1 | Q8L3W1 | 26.5 | 336 | 178 | 9 | 12 | 284 | 6 | 335 | 1.8e-23 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84517.t1 | G8A2Z2 | 77.1 | 284 | 62 | 1 | 1 | 284 | 1 | 281 | 5.1e-120 | 440.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84517.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051720 | MS.gene84517 | 0.813765 | 2.17E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene84517 | 0.800843 | 1.19E-48 | -1.69E-46 |
| MS.gene054991 | MS.gene84517 | 0.81093 | 9.02E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene84517 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene84517 | 0.802877 | 4.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84517.t1 | MTR_3g061370 | 77.113 | 284 | 62 | 1 | 1 | 284 | 1 | 281 | 2.60e-160 | 447 |
| MS.gene84517.t1 | MTR_3g061350 | 76.056 | 284 | 68 | 0 | 1 | 284 | 1 | 284 | 1.84e-158 | 442 |
| MS.gene84517.t1 | MTR_3g061320 | 77.465 | 284 | 59 | 3 | 1 | 284 | 1 | 279 | 4.45e-157 | 439 |
| MS.gene84517.t1 | MTR_3g061310 | 74.126 | 286 | 71 | 2 | 1 | 284 | 1 | 285 | 6.51e-148 | 416 |
| MS.gene84517.t1 | MTR_3g061340 | 71.228 | 285 | 70 | 4 | 1 | 284 | 1 | 274 | 1.12e-137 | 390 |
| MS.gene84517.t1 | MTR_3g061330 | 76.587 | 252 | 57 | 2 | 1 | 251 | 1 | 251 | 7.37e-136 | 384 |
| MS.gene84517.t1 | MTR_3g061290 | 72.674 | 172 | 46 | 1 | 1 | 172 | 1 | 171 | 1.27e-83 | 250 |
| MS.gene84517.t1 | MTR_3g061220 | 68.182 | 132 | 27 | 3 | 1 | 132 | 1 | 117 | 9.73e-55 | 173 |
| MS.gene84517.t1 | MTR_3g061300 | 67.769 | 121 | 39 | 0 | 163 | 283 | 2 | 122 | 7.39e-53 | 169 |
| MS.gene84517.t1 | MTR_8g103940 | 35.202 | 321 | 154 | 12 | 4 | 288 | 31 | 333 | 5.40e-49 | 169 |
| MS.gene84517.t1 | MTR_8g103940 | 40.404 | 99 | 51 | 3 | 190 | 284 | 400 | 494 | 1.51e-12 | 67.8 |
| MS.gene84517.t1 | MTR_1g035460 | 33.904 | 292 | 153 | 8 | 26 | 284 | 2 | 286 | 1.51e-44 | 155 |
| MS.gene84517.t1 | MTR_7g050710 | 33.775 | 302 | 167 | 12 | 10 | 284 | 11 | 306 | 3.08e-42 | 147 |
| MS.gene84517.t1 | MTR_7g050560 | 33.564 | 289 | 168 | 8 | 10 | 284 | 11 | 289 | 7.58e-41 | 144 |
| MS.gene84517.t1 | MTR_5g044670 | 31.186 | 295 | 171 | 8 | 12 | 283 | 16 | 301 | 1.89e-40 | 143 |
| MS.gene84517.t1 | MTR_1g108780 | 32.550 | 298 | 149 | 8 | 21 | 284 | 10 | 289 | 3.12e-40 | 145 |
| MS.gene84517.t1 | MTR_1g108780 | 25.614 | 285 | 172 | 11 | 12 | 284 | 201 | 457 | 3.27e-14 | 72.8 |
| MS.gene84517.t1 | MTR_3g098790 | 33.333 | 291 | 175 | 8 | 10 | 284 | 11 | 298 | 6.77e-40 | 142 |
| MS.gene84517.t1 | MTR_7g050720 | 32.468 | 308 | 174 | 9 | 10 | 284 | 8 | 314 | 7.81e-38 | 136 |
| MS.gene84517.t1 | MTR_7g050580 | 31.560 | 282 | 179 | 7 | 12 | 284 | 13 | 289 | 5.93e-33 | 123 |
| MS.gene84517.t1 | MTR_7g050590 | 31.293 | 294 | 151 | 10 | 26 | 284 | 2 | 279 | 1.92e-31 | 119 |
| MS.gene84517.t1 | MTR_1g035640 | 28.873 | 284 | 184 | 7 | 12 | 287 | 9 | 282 | 3.63e-30 | 118 |
| MS.gene84517.t1 | MTR_4g119990 | 29.276 | 304 | 181 | 11 | 10 | 284 | 13 | 311 | 1.77e-29 | 115 |
| MS.gene84517.t1 | MTR_6g043890 | 29.010 | 293 | 163 | 10 | 10 | 271 | 13 | 291 | 3.97e-26 | 105 |
| MS.gene84517.t1 | MTR_3g005480 | 28.522 | 291 | 144 | 9 | 12 | 287 | 21 | 262 | 6.25e-26 | 103 |
| MS.gene84517.t1 | MTR_5g070440 | 31.560 | 282 | 155 | 11 | 12 | 287 | 21 | 270 | 1.65e-25 | 102 |
| MS.gene84517.t1 | MTR_1g035570 | 27.055 | 292 | 178 | 10 | 12 | 283 | 9 | 285 | 1.05e-24 | 102 |
| MS.gene84517.t1 | MTR_3g005490 | 28.421 | 285 | 145 | 8 | 12 | 284 | 21 | 258 | 1.67e-24 | 99.8 |
| MS.gene84517.t1 | MTR_6g061070 | 29.085 | 306 | 172 | 11 | 16 | 284 | 24 | 321 | 3.48e-24 | 101 |
| MS.gene84517.t1 | MTR_3g005420 | 28.472 | 288 | 156 | 6 | 12 | 287 | 289 | 538 | 1.97e-21 | 94.4 |
| MS.gene84517.t1 | MTR_3g005420 | 37.000 | 100 | 60 | 2 | 12 | 108 | 40 | 139 | 1.23e-12 | 68.2 |
| MS.gene84517.t1 | MTR_1g034240 | 40.196 | 102 | 59 | 1 | 12 | 111 | 7 | 108 | 5.29e-21 | 92.4 |
| MS.gene84517.t1 | MTR_4g068320 | 34.091 | 132 | 78 | 2 | 12 | 134 | 6 | 137 | 5.32e-21 | 92.4 |
| MS.gene84517.t1 | MTR_4g068320 | 30.909 | 165 | 93 | 8 | 134 | 284 | 230 | 387 | 2.24e-11 | 64.3 |
| MS.gene84517.t1 | MTR_1g035620 | 27.835 | 291 | 179 | 12 | 12 | 288 | 9 | 282 | 1.10e-20 | 91.3 |
| MS.gene84517.t1 | MTR_1g035520 | 27.160 | 324 | 184 | 12 | 4 | 283 | 67 | 382 | 3.43e-20 | 89.7 |
| MS.gene84517.t1 | MTR_7g050640 | 43.158 | 95 | 52 | 1 | 11 | 103 | 12 | 106 | 8.71e-20 | 83.2 |
| MS.gene84517.t1 | MTR_3g005460 | 26.599 | 297 | 174 | 8 | 1 | 284 | 251 | 516 | 1.01e-19 | 89.4 |
| MS.gene84517.t1 | MTR_3g005460 | 38.525 | 122 | 71 | 3 | 12 | 129 | 25 | 146 | 2.08e-16 | 79.3 |
| MS.gene84517.t1 | MTR_1g035440 | 43.137 | 102 | 55 | 2 | 10 | 108 | 13 | 114 | 1.32e-18 | 83.2 |
| MS.gene84517.t1 | MTR_1g033740 | 34.965 | 143 | 84 | 4 | 10 | 146 | 20 | 159 | 6.54e-18 | 80.1 |
| MS.gene84517.t1 | MTR_3g005495 | 28.205 | 273 | 142 | 7 | 12 | 278 | 243 | 467 | 1.22e-17 | 82.8 |
| MS.gene84517.t1 | MTR_3g005495 | 41.667 | 84 | 49 | 0 | 25 | 108 | 28 | 111 | 7.91e-15 | 74.7 |
| MS.gene84517.t1 | MTR_1g035650 | 28.125 | 192 | 123 | 4 | 11 | 195 | 8 | 191 | 1.44e-17 | 79.7 |
| MS.gene84517.t1 | MTR_1g034210 | 39.623 | 106 | 60 | 2 | 8 | 111 | 3 | 106 | 1.80e-17 | 81.3 |
| MS.gene84517.t1 | MTR_1g034210 | 39.623 | 106 | 60 | 2 | 8 | 111 | 3 | 106 | 3.11e-17 | 81.3 |
| MS.gene84517.t1 | MTR_1g050845 | 24.476 | 286 | 183 | 9 | 12 | 288 | 9 | 270 | 1.77e-16 | 79.7 |
| MS.gene84517.t1 | MTR_1g021360 | 24.567 | 289 | 199 | 8 | 9 | 281 | 181 | 466 | 2.35e-16 | 79.3 |
| MS.gene84517.t1 | MTR_1g035510 | 35.862 | 145 | 86 | 4 | 26 | 170 | 2 | 139 | 3.32e-16 | 76.3 |
| MS.gene84517.t1 | MTR_3g005440 | 32.174 | 115 | 78 | 0 | 13 | 127 | 23 | 137 | 8.26e-16 | 77.4 |
| MS.gene84517.t1 | MTR_3g005440 | 32.258 | 124 | 82 | 1 | 22 | 143 | 254 | 377 | 2.12e-13 | 70.5 |
| MS.gene84517.t1 | MTR_1g035480 | 34.586 | 133 | 77 | 4 | 10 | 135 | 15 | 144 | 9.44e-16 | 73.9 |
| MS.gene84517.t1 | MTR_1g035470 | 40.000 | 115 | 60 | 4 | 26 | 135 | 2 | 112 | 4.03e-15 | 71.2 |
| MS.gene84517.t1 | MTR_1g035500 | 34.028 | 144 | 85 | 4 | 10 | 146 | 23 | 163 | 8.14e-15 | 71.6 |
| MS.gene84517.t1 | MTR_1g021410 | 21.795 | 312 | 192 | 7 | 22 | 284 | 34 | 342 | 2.81e-14 | 72.4 |
| MS.gene84517.t1 | MTR_1g021435 | 23.054 | 334 | 170 | 13 | 22 | 283 | 34 | 352 | 4.66e-13 | 68.9 |
| MS.gene84517.t1 | MTR_3g005420 | 37.000 | 100 | 60 | 2 | 12 | 108 | 21 | 120 | 9.58e-13 | 68.6 |
| MS.gene84517.t1 | MTR_1g021380 | 21.538 | 325 | 190 | 12 | 9 | 283 | 19 | 328 | 6.06e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84517.t1 | AT3G18990 | 26.488 | 336 | 178 | 9 | 12 | 284 | 6 | 335 | 6.95e-34 | 126 |
| MS.gene84517.t1 | AT3G18990 | 26.488 | 336 | 178 | 9 | 12 | 284 | 6 | 335 | 1.63e-33 | 126 |
| MS.gene84517.t1 | AT1G49475 | 39.286 | 140 | 70 | 4 | 11 | 137 | 33 | 170 | 3.94e-19 | 83.6 |
| MS.gene84517.t1 | AT3G18960 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 9.43e-17 | 77.0 |
| MS.gene84517.t1 | AT3G18960 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 1.02e-16 | 77.4 |
| MS.gene84517.t1 | AT4G01580 | 36.283 | 113 | 66 | 2 | 11 | 117 | 29 | 141 | 1.18e-16 | 76.6 |
| MS.gene84517.t1 | AT4G33280 | 23.762 | 303 | 196 | 10 | 10 | 284 | 23 | 318 | 2.44e-14 | 72.8 |
| MS.gene84517.t1 | AT3G18960 | 41.667 | 84 | 49 | 0 | 25 | 108 | 8 | 91 | 4.03e-14 | 69.3 |
| MS.gene84517.t1 | AT1G49480 | 28.324 | 173 | 106 | 6 | 123 | 284 | 55 | 220 | 5.13e-13 | 67.4 |
| MS.gene84517.t1 | AT1G49480 | 28.324 | 173 | 106 | 6 | 123 | 284 | 55 | 220 | 5.13e-13 | 67.4 |
| MS.gene84517.t1 | AT1G49480 | 28.324 | 173 | 106 | 6 | 123 | 284 | 55 | 220 | 5.13e-13 | 67.4 |
Find 61 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATGTACCAAGTTTAAA+AGG | 0.192490 | 3.1:-45779347 | MS.gene84517:CDS |
| TGATGAATCAGTTGAGATTT+TGG | 0.207341 | 3.1:-45779821 | MS.gene84517:CDS |
| ACACAAAATGGAAAATTTAT+TGG | 0.211795 | 3.1:-45780053 | MS.gene84517:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.285020 | 3.1:-45779567 | MS.gene84517:CDS |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3.1:+45780429 | None:intergenic |
| AAGAATGGGGTGCTTCAAAT+TGG | 0.305697 | 3.1:-45779305 | MS.gene84517:CDS |
| AGACTCCTGATGACACAAAA+TGG | 0.311302 | 3.1:-45780065 | MS.gene84517:CDS |
| AGTCTATTTCTACTGCATTC+TGG | 0.333088 | 3.1:+45779899 | None:intergenic |
| CTCTCTTGGACGTGGCTGTT+TGG | 0.347123 | 3.1:-45779971 | MS.gene84517:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3.1:-45779985 | MS.gene84517:CDS |
| TCTCATAAAGCCTAATCATT+TGG | 0.386440 | 3.1:-45779479 | MS.gene84517:CDS |
| CTTTGCAAACAACGACCAAC+CGG | 0.388975 | 3.1:+45779217 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.404488 | 3.1:-45780019 | MS.gene84517:CDS |
| TTGGTTGTGTTTGAATATAA+AGG | 0.407121 | 3.1:-45779952 | MS.gene84517:CDS |
| CGAAATTTCTTATGTGGTTG+AGG | 0.409501 | 3.1:+45779748 | None:intergenic |
| AAAGGAAAGTGGACTGCAAC+CGG | 0.409884 | 3.1:-45779198 | MS.gene84517:CDS |
| CGATTTGCTACCAAATGATT+AGG | 0.413689 | 3.1:+45779469 | None:intergenic |
| TGTCTCCTTGTAAACTTAGT+TGG | 0.417262 | 3.1:+45780120 | None:intergenic |
| TTGAGAACAAGGAGAAGAAT+GGG | 0.434824 | 3.1:-45779319 | MS.gene84517:CDS |
| AGAATGTACCAAGTTTAAAA+GGG | 0.440224 | 3.1:-45779346 | MS.gene84517:CDS |
| AAACCTCGAAATTTCTTATG+TGG | 0.440475 | 3.1:+45779742 | None:intergenic |
| CAACCACATAAGAAATTTCG+AGG | 0.448613 | 3.1:-45779745 | MS.gene84517:intron |
| TCCTTTGAAGATTAGTTTGG+AGG | 0.466963 | 3.1:+45780432 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3.1:-45780014 | MS.gene84517:CDS |
| TCCTGAGCTCTAGCATCCCT+TGG | 0.476761 | 3.1:+45779544 | None:intergenic |
| ATTGAGAACAAGGAGAAGAA+TGG | 0.479617 | 3.1:-45779320 | MS.gene84517:CDS |
| AAGGGTCGCTGGCTTTCGTC+CGG | 0.479732 | 3.1:-45779236 | MS.gene84517:CDS |
| AGAATGGGGTGCTTCAAATT+GGG | 0.486287 | 3.1:-45779304 | MS.gene84517:CDS |
| AAAAGGGGTTATTGAGAACA+AGG | 0.491715 | 3.1:-45779330 | MS.gene84517:CDS |
| CTAATCATTTGGTAGCAAAT+CGG | 0.496212 | 3.1:-45779468 | MS.gene84517:CDS |
| CTGTTGGTACAACCACACTA+AGG | 0.500363 | 3.1:-45779255 | MS.gene84517:CDS |
| GGAGGATGATCTTGAAGAAA+CGG | 0.501786 | 3.1:+45780450 | None:intergenic |
| GTCGCTGGCTTTCGTCCGGT+TGG | 0.501854 | 3.1:-45779232 | MS.gene84517:CDS |
| TTCAAATTGGGAAAAGATCA+TGG | 0.505109 | 3.1:-45779292 | MS.gene84517:CDS |
| GCCAAGGGATGCTAGAGCTC+AGG | 0.513948 | 3.1:-45779545 | MS.gene84517:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.518476 | 3.1:-45780018 | MS.gene84517:CDS |
| CGGTTGGTCGTTGTTTGCAA+AGG | 0.518916 | 3.1:-45779216 | MS.gene84517:CDS |
| TCGTTGTTTGCAAAGGAAAG+TGG | 0.519381 | 3.1:-45779209 | MS.gene84517:CDS |
| TCAGGAGTCTTTATCACCAC+AGG | 0.520726 | 3.1:+45780078 | None:intergenic |
| CTTCATCAATAAATTGGCCA+AGG | 0.530612 | 3.1:-45779561 | MS.gene84517:CDS |
| TCCTCCAAACTAATCTTCAA+AGG | 0.552905 | 3.1:-45780433 | MS.gene84517:CDS |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3.1:+45779924 | None:intergenic |
| AAATACCAACTAAGTTTACA+AGG | 0.559571 | 3.1:-45780125 | MS.gene84517:CDS |
| ACAACCACACTAAGGGTCGC+TGG | 0.574129 | 3.1:-45779247 | MS.gene84517:CDS |
| GGAATGTGAAATTGCTCTGT+TGG | 0.576259 | 3.1:-45779271 | MS.gene84517:CDS |
| TCAAAGACACAAACATCTCC+CGG | 0.581806 | 3.1:+45779179 | None:intergenic |
| TGAACGGCTTAATCGGAAGA+AGG | 0.583690 | 3.1:-45779797 | MS.gene84517:CDS |
| TCATTTGGTAGCAAATCGGC+AGG | 0.586374 | 3.1:-45779464 | MS.gene84517:intron |
| TGATCTTGAAGAAACGGACG+AGG | 0.601322 | 3.1:+45780456 | None:intergenic |
| GAATGTACCAAGTTTAAAAG+GGG | 0.611239 | 3.1:-45779345 | MS.gene84517:CDS |
| AAGGAAAGTGGACTGCAACC+GGG | 0.612688 | 3.1:-45779197 | MS.gene84517:CDS |
| TGTTGGTACAACCACACTAA+GGG | 0.614040 | 3.1:-45779254 | MS.gene84517:CDS |
| GAAAATTACTCTCTTGGACG+TGG | 0.618806 | 3.1:-45779979 | MS.gene84517:CDS |
| TTCATCAATAAATTGGCCAA+GGG | 0.622394 | 3.1:-45779560 | MS.gene84517:CDS |
| TTTACAAGGAGACATGGAGT+TGG | 0.631934 | 3.1:-45780111 | MS.gene84517:CDS |
| ACTAAGTTTACAAGGAGACA+TGG | 0.632567 | 3.1:-45780117 | MS.gene84517:CDS |
| TGTCTTTGAACTGATAAACA+AGG | 0.641859 | 3.1:-45779165 | MS.gene84517:CDS |
| TGTGGTTGAGGAGAAACAGA+AGG | 0.646974 | 3.1:+45779760 | None:intergenic |
| AAAGCCAGCGACCCTTAGTG+TGG | 0.674774 | 3.1:+45779243 | None:intergenic |
| TGAGAACAAGGAGAAGAATG+GGG | 0.717831 | 3.1:-45779318 | MS.gene84517:CDS |
| AGTTGGTCTATCAAATCCTG+TGG | 0.752396 | 3.1:-45780094 | MS.gene84517:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAACTTCATCAATAAAT+TGG | - | chr3.1:45780033-45780052 | MS.gene84517:CDS | 20.0% |
| !! | ACACAAAATGGAAAATTTAT+TGG | - | chr3.1:45779547-45779566 | MS.gene84517:CDS | 20.0% |
| !! | ATTTATTGGAAAAAAATCGA+TGG | - | chr3.1:45779561-45779580 | MS.gene84517:CDS | 20.0% |
| !! | CTAAAGTAAATAGTACTAAT+AGG | + | chr3.1:45779205-45779224 | None:intergenic | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | + | chr3.1:45780110-45780129 | None:intergenic | 20.0% |
| ! | AAATACCAACTAAGTTTACA+AGG | - | chr3.1:45779475-45779494 | MS.gene84517:CDS | 25.0% |
| ! | AGAATGTACCAAGTTTAAAA+GGG | - | chr3.1:45780254-45780273 | MS.gene84517:intron | 25.0% |
| ! | TAGCACTAGAAAGTTTATTA+TGG | - | chr3.1:45779339-45779358 | MS.gene84517:CDS | 25.0% |
| ! | TTGGTTGTGTTTGAATATAA+AGG | - | chr3.1:45779648-45779667 | MS.gene84517:intron | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3.1:45779615-45779634 | MS.gene84517:intron | 25.0% |
| !! | TAAAGTTCATGTTTTCGAAA+GGG | - | chr3.1:45780471-45780490 | MS.gene84517:CDS | 25.0% |
| !! | TTAAAGTTCATGTTTTCGAA+AGG | - | chr3.1:45780470-45780489 | MS.gene84517:CDS | 25.0% |
| !!! | AGTGTTTTATTCCTATAGAA+GGG | - | chr3.1:45779395-45779414 | MS.gene84517:intron | 25.0% |
| AAAAAATCGATGGTGAGATT+TGG | - | chr3.1:45779571-45779590 | MS.gene84517:CDS | 30.0% | |
| AAACCTCGAAATTTCTTATG+TGG | + | chr3.1:45779861-45779880 | None:intergenic | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | + | chr3.1:45779679-45779698 | None:intergenic | 30.0% | |
| AATATAAACACCCCTTCTAT+AGG | + | chr3.1:45779409-45779428 | None:intergenic | 30.0% | |
| ACATAAGAAATTTCGAGGTT+TGG | - | chr3.1:45779860-45779879 | MS.gene84517:CDS | 30.0% | |
| CAGAATGTACCAAGTTTAAA+AGG | - | chr3.1:45780253-45780272 | MS.gene84517:intron | 30.0% | |
| GAATGTACCAAGTTTAAAAG+GGG | - | chr3.1:45780255-45780274 | MS.gene84517:intron | 30.0% | |
| GTAAAAATCAAAAACCCCTT+TGG | + | chr3.1:45779452-45779471 | None:intergenic | 30.0% | |
| TACATTGCAAACATATATGC+AGG | - | chr3.1:45779990-45780009 | MS.gene84517:CDS | 30.0% | |
| TCTCATAAAGCCTAATCATT+TGG | - | chr3.1:45780121-45780140 | MS.gene84517:CDS | 30.0% | |
| TGAAATGCATATATGACTTG+TGG | + | chr3.1:45779260-45779279 | None:intergenic | 30.0% | |
| TGTCTTTGAACTGATAAACA+AGG | - | chr3.1:45780435-45780454 | MS.gene84517:CDS | 30.0% | |
| TGTTTGCAATGTAAAACTCA+TGG | + | chr3.1:45779983-45780002 | None:intergenic | 30.0% | |
| TTCAAATTGGGAAAAGATCA+TGG | - | chr3.1:45780308-45780327 | MS.gene84517:intron | 30.0% | |
| TTCATCAATAAATTGGCCAA+GGG | - | chr3.1:45780040-45780059 | MS.gene84517:CDS | 30.0% | |
| ! | ATTTTCCATTTTGTGTCATC+AGG | + | chr3.1:45779543-45779562 | None:intergenic | 30.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | + | chr3.1:45779174-45779193 | None:intergenic | 30.0% |
| ! | CTAATCATTTGGTAGCAAAT+CGG | - | chr3.1:45780132-45780151 | MS.gene84517:intron | 30.0% |
| ! | TCAATAACCCCTTTTAAACT+TGG | + | chr3.1:45780265-45780284 | None:intergenic | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | - | chr3.1:45779779-45779798 | MS.gene84517:CDS | 30.0% |
| !! | CAGTGTTTTATTCCTATAGA+AGG | - | chr3.1:45779394-45779413 | MS.gene84517:intron | 30.0% |
| !! | GTGTTTTATTCCTATAGAAG+GGG | - | chr3.1:45779396-45779415 | MS.gene84517:intron | 30.0% |
| AAAAGGGGTTATTGAGAACA+AGG | - | chr3.1:45780270-45780289 | MS.gene84517:intron | 35.0% | |
| ACTAAGTTTACAAGGAGACA+TGG | - | chr3.1:45779483-45779502 | MS.gene84517:CDS | 35.0% | |
| ATTGAGAACAAGGAGAAGAA+TGG | - | chr3.1:45780280-45780299 | MS.gene84517:intron | 35.0% | |
| CAACCACATAAGAAATTTCG+AGG | - | chr3.1:45779855-45779874 | MS.gene84517:CDS | 35.0% | |
| CGAAATTTCTTATGTGGTTG+AGG | + | chr3.1:45779855-45779874 | None:intergenic | 35.0% | |
| CTTCATCAATAAATTGGCCA+AGG | - | chr3.1:45780039-45780058 | MS.gene84517:CDS | 35.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | - | chr3.1:45779167-45779186 | MS.gene84517:CDS | 35.0% | |
| TGTCTCCTTGTAAACTTAGT+TGG | + | chr3.1:45779483-45779502 | None:intergenic | 35.0% | |
| TTGAGAACAAGGAGAAGAAT+GGG | - | chr3.1:45780281-45780300 | MS.gene84517:intron | 35.0% | |
| ! | AGAAATTTCGAGGTTTGGTT+TGG | - | chr3.1:45779865-45779884 | MS.gene84517:CDS | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+CGG | - | chr3.1:45779787-45779806 | MS.gene84517:CDS | 35.0% |
| ! | TTTTGGATGAACGGCTTAAT+CGG | - | chr3.1:45779796-45779815 | MS.gene84517:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3.1:45779586-45779605 | MS.gene84517:CDS | 35.0% |
| !! | AGTCTATTTCTACTGCATTC+TGG | + | chr3.1:45779704-45779723 | None:intergenic | 35.0% |
| !! | CGATTTGCTACCAAATGATT+AGG | + | chr3.1:45780134-45780153 | None:intergenic | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3.1:45779582-45779601 | MS.gene84517:CDS | 35.0% |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | + | chr3.1:45779171-45779190 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3.1:45779581-45779600 | MS.gene84517:CDS | 35.0% |
| AGACTCCTGATGACACAAAA+TGG | - | chr3.1:45779535-45779554 | MS.gene84517:CDS | 40.0% | |
| GAAAATTACTCTCTTGGACG+TGG | - | chr3.1:45779621-45779640 | MS.gene84517:intron | 40.0% | |
| GGAATGTGAAATTGCTCTGT+TGG | - | chr3.1:45780329-45780348 | MS.gene84517:intron | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | + | chr3.1:45779153-45779172 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | + | chr3.1:45780424-45780443 | None:intergenic | 40.0% | |
| TCGTTGTTTGCAAAGGAAAG+TGG | - | chr3.1:45780391-45780410 | MS.gene84517:intron | 40.0% | |
| TGAGAACAAGGAGAAGAATG+GGG | - | chr3.1:45780282-45780301 | MS.gene84517:intron | 40.0% | |
| TGTTGGTACAACCACACTAA+GGG | - | chr3.1:45780346-45780365 | MS.gene84517:intron | 40.0% | |
| TTTACAAGGAGACATGGAGT+TGG | - | chr3.1:45779489-45779508 | MS.gene84517:CDS | 40.0% | |
| ! | AAGAATGGGGTGCTTCAAAT+TGG | - | chr3.1:45780295-45780314 | MS.gene84517:intron | 40.0% |
| ! | ACCTTTTGCTTAGTGACCAA+AGG | - | chr3.1:45779433-45779452 | MS.gene84517:intron | 40.0% |
| ! | AGAATGGGGTGCTTCAAATT+GGG | - | chr3.1:45780296-45780315 | MS.gene84517:intron | 40.0% |
| ! | AGTTGGTCTATCAAATCCTG+TGG | - | chr3.1:45779506-45779525 | MS.gene84517:CDS | 40.0% |
| ! | CCTTTTGCTTAGTGACCAAA+GGG | - | chr3.1:45779434-45779453 | MS.gene84517:intron | 40.0% |
| ! | CTTTTGCTTAGTGACCAAAG+GGG | - | chr3.1:45779435-45779454 | MS.gene84517:intron | 40.0% |
| ! | GTTCATGTTTTCGAAAGGGT+CGG | - | chr3.1:45780475-45780494 | MS.gene84517:CDS | 40.0% |
| CCCTTTGGTCACTAAGCAAA+AGG | + | chr3.1:45779437-45779456 | None:intergenic | 45.0% | |
| CTGTTGGTACAACCACACTA+AGG | - | chr3.1:45780345-45780364 | MS.gene84517:intron | 45.0% | |
| CTTGTGGAATGTGTGATGTG+TGG | + | chr3.1:45779244-45779263 | None:intergenic | 45.0% | |
| CTTTGCAAACAACGACCAAC+CGG | + | chr3.1:45780386-45780405 | None:intergenic | 45.0% | |
| TCAGGAGTCTTTATCACCAC+AGG | + | chr3.1:45779525-45779544 | None:intergenic | 45.0% | |
| TGAACGGCTTAATCGGAAGA+AGG | - | chr3.1:45779803-45779822 | MS.gene84517:CDS | 45.0% | |
| TGATCTTGAAGAAACGGACG+AGG | + | chr3.1:45779147-45779166 | None:intergenic | 45.0% | |
| TGTGGTTGAGGAGAAACAGA+AGG | + | chr3.1:45779843-45779862 | None:intergenic | 45.0% | |
| ! | TCATTTGGTAGCAAATCGGC+AGG | - | chr3.1:45780136-45780155 | MS.gene84517:intron | 45.0% |
| !! | AAAGGAAAGTGGACTGCAAC+CGG | - | chr3.1:45780402-45780421 | MS.gene84517:intron | 45.0% |
| TGGTAGCAAATCGGCAGGTA+AGG | - | chr3.1:45780141-45780160 | MS.gene84517:intron | 50.0% | |
| ! | CGGTTGGTCGTTGTTTGCAA+AGG | - | chr3.1:45780384-45780403 | MS.gene84517:intron | 50.0% |
| !! | AAGGAAAGTGGACTGCAACC+GGG | - | chr3.1:45780403-45780422 | MS.gene84517:intron | 50.0% |
| AAAGCCAGCGACCCTTAGTG+TGG | + | chr3.1:45780360-45780379 | None:intergenic | 55.0% | |
| ACAACCACACTAAGGGTCGC+TGG | - | chr3.1:45780353-45780372 | MS.gene84517:intron | 55.0% | |
| CTCTCTTGGACGTGGCTGTT+TGG | - | chr3.1:45779629-45779648 | MS.gene84517:intron | 55.0% | |
| ! | TCCTGAGCTCTAGCATCCCT+TGG | + | chr3.1:45780059-45780078 | None:intergenic | 55.0% |
| GCCAAGGGATGCTAGAGCTC+AGG | - | chr3.1:45780055-45780074 | MS.gene84517:CDS | 60.0% | |
| !! | AAGGGTCGCTGGCTTTCGTC+CGG | - | chr3.1:45780364-45780383 | MS.gene84517:intron | 60.0% |
| !! | GTCGCTGGCTTTCGTCCGGT+TGG | - | chr3.1:45780368-45780387 | MS.gene84517:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45779121 | 45780501 | 45779121 | ID=MS.gene84517 |
| chr3.1 | mRNA | 45779121 | 45780501 | 45779121 | ID=MS.gene84517.t1;Parent=MS.gene84517 |
| chr3.1 | exon | 45780430 | 45780501 | 45780430 | ID=MS.gene84517.t1.exon1;Parent=MS.gene84517.t1 |
| chr3.1 | CDS | 45780430 | 45780501 | 45780430 | ID=cds.MS.gene84517.t1;Parent=MS.gene84517.t1 |
| chr3.1 | exon | 45779746 | 45780148 | 45779746 | ID=MS.gene84517.t1.exon2;Parent=MS.gene84517.t1 |
| chr3.1 | CDS | 45779746 | 45780148 | 45779746 | ID=cds.MS.gene84517.t1;Parent=MS.gene84517.t1 |
| chr3.1 | exon | 45779465 | 45779610 | 45779465 | ID=MS.gene84517.t1.exon3;Parent=MS.gene84517.t1 |
| chr3.1 | CDS | 45779465 | 45779610 | 45779465 | ID=cds.MS.gene84517.t1;Parent=MS.gene84517.t1 |
| chr3.1 | exon | 45779121 | 45779366 | 45779121 | ID=MS.gene84517.t1.exon4;Parent=MS.gene84517.t1 |
| chr3.1 | CDS | 45779121 | 45779366 | 45779121 | ID=cds.MS.gene84517.t1;Parent=MS.gene84517.t1 |
| Gene Sequence |
| Protein sequence |
