Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84761.t1 | XP_003627593.1 | 98.5 | 262 | 4 | 0 | 1 | 262 | 32 | 293 | 2.90E-144 | 521.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84761.t1 | Q9M2E2 | 54.5 | 264 | 117 | 3 | 2 | 262 | 33 | 296 | 1.5e-77 | 290.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84761.t1 | G7LBT1 | 98.5 | 262 | 4 | 0 | 1 | 262 | 32 | 293 | 2.1e-144 | 521.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene84761 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene84761 | 0.800014 | 1.76E-48 | -1.69E-46 |
| MS.gene054742 | MS.gene84761 | 0.818649 | 1.76E-52 | -1.69E-46 |
| MS.gene055240 | MS.gene84761 | 0.815023 | 1.14E-51 | -1.69E-46 |
| MS.gene056714 | MS.gene84761 | 0.82493 | 6.18E-54 | -1.69E-46 |
| MS.gene056715 | MS.gene84761 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene84761 | 0.816038 | 6.80E-52 | -1.69E-46 |
| MS.gene059955 | MS.gene84761 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene84761 | 0.800184 | 1.62E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84761.t1 | MTR_8g031900 | 98.473 | 262 | 4 | 0 | 1 | 262 | 32 | 293 | 0.0 | 530 |
| MS.gene84761.t1 | MTR_8g031850 | 82.443 | 262 | 8 | 1 | 1 | 262 | 32 | 255 | 3.88e-152 | 424 |
| MS.gene84761.t1 | MTR_7g076665 | 65.152 | 264 | 90 | 2 | 1 | 262 | 32 | 295 | 1.86e-117 | 338 |
| MS.gene84761.t1 | MTR_7g076660 | 57.471 | 261 | 104 | 3 | 2 | 262 | 9 | 262 | 6.81e-107 | 310 |
| MS.gene84761.t1 | MTR_8g031990 | 55.263 | 266 | 114 | 2 | 2 | 262 | 33 | 298 | 6.90e-107 | 311 |
| MS.gene84761.t1 | MTR_8g032010 | 55.639 | 266 | 113 | 2 | 2 | 262 | 33 | 298 | 7.78e-107 | 311 |
| MS.gene84761.t1 | MTR_7g076660 | 57.471 | 261 | 104 | 3 | 2 | 262 | 33 | 286 | 1.09e-106 | 310 |
| MS.gene84761.t1 | MTR_7g076660 | 57.471 | 261 | 104 | 3 | 2 | 262 | 34 | 287 | 1.87e-106 | 310 |
| MS.gene84761.t1 | MTR_8g032000 | 55.639 | 266 | 113 | 2 | 2 | 262 | 33 | 298 | 2.37e-105 | 308 |
| MS.gene84761.t1 | MTR_7g076655 | 55.939 | 261 | 108 | 3 | 2 | 262 | 33 | 286 | 9.75e-104 | 303 |
| MS.gene84761.t1 | MTR_8g032020 | 55.056 | 267 | 114 | 3 | 2 | 262 | 34 | 300 | 5.64e-102 | 299 |
| MS.gene84761.t1 | MTR_8g031960 | 53.962 | 265 | 117 | 2 | 2 | 261 | 34 | 298 | 6.02e-99 | 291 |
| MS.gene84761.t1 | MTR_8g031910 | 55.344 | 262 | 109 | 4 | 2 | 262 | 33 | 287 | 2.43e-97 | 287 |
| MS.gene84761.t1 | MTR_8g031980 | 52.256 | 266 | 122 | 2 | 2 | 262 | 33 | 298 | 5.10e-96 | 284 |
| MS.gene84761.t1 | MTR_8g031940 | 53.184 | 267 | 119 | 3 | 2 | 262 | 33 | 299 | 1.08e-95 | 283 |
| MS.gene84761.t1 | MTR_8g031600 | 54.753 | 263 | 112 | 3 | 2 | 258 | 33 | 294 | 4.61e-94 | 279 |
| MS.gene84761.t1 | MTR_8g031630 | 54.962 | 262 | 112 | 4 | 2 | 258 | 33 | 293 | 5.58e-92 | 273 |
| MS.gene84761.t1 | MTR_8g031610 | 54.198 | 262 | 113 | 4 | 2 | 258 | 31 | 290 | 2.00e-90 | 270 |
| MS.gene84761.t1 | MTR_8g031650 | 54.962 | 262 | 112 | 4 | 2 | 258 | 127 | 387 | 2.13e-90 | 273 |
| MS.gene84761.t1 | MTR_8g031650 | 51.961 | 102 | 47 | 2 | 134 | 233 | 2 | 103 | 5.21e-27 | 108 |
| MS.gene84761.t1 | MTR_8g031650 | 54.962 | 262 | 112 | 4 | 2 | 258 | 293 | 553 | 8.70e-89 | 274 |
| MS.gene84761.t1 | MTR_8g031650 | 54.852 | 237 | 102 | 3 | 2 | 233 | 33 | 269 | 1.84e-80 | 252 |
| MS.gene84761.t1 | MTR_5g062280 | 52.273 | 264 | 122 | 2 | 2 | 262 | 33 | 295 | 2.49e-88 | 264 |
| MS.gene84761.t1 | MTR_5g083430 | 59.314 | 204 | 63 | 1 | 59 | 262 | 1 | 184 | 1.11e-80 | 241 |
| MS.gene84761.t1 | MTR_3g079320 | 46.125 | 271 | 135 | 4 | 2 | 262 | 37 | 306 | 2.25e-76 | 234 |
| MS.gene84761.t1 | MTR_7g106800 | 43.609 | 266 | 95 | 3 | 2 | 262 | 35 | 250 | 1.33e-64 | 203 |
| MS.gene84761.t1 | MTR_3g098470 | 35.294 | 272 | 144 | 5 | 2 | 262 | 61 | 311 | 9.74e-51 | 169 |
| MS.gene84761.t1 | MTR_8g032030 | 57.746 | 142 | 54 | 2 | 2 | 137 | 33 | 174 | 1.04e-46 | 155 |
| MS.gene84761.t1 | MTR_1g031180 | 34.191 | 272 | 147 | 5 | 2 | 262 | 66 | 316 | 1.33e-45 | 155 |
| MS.gene84761.t1 | MTR_8g096060 | 30.147 | 272 | 155 | 5 | 2 | 262 | 63 | 310 | 1.20e-38 | 137 |
| MS.gene84761.t1 | MTR_4g087460 | 34.074 | 270 | 142 | 9 | 2 | 255 | 48 | 297 | 6.40e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84761.t1 | AT3G61220 | 54.545 | 264 | 117 | 3 | 2 | 262 | 33 | 296 | 1.41e-99 | 293 |
| MS.gene84761.t1 | AT3G61220 | 54.545 | 264 | 117 | 3 | 2 | 262 | 40 | 303 | 3.17e-99 | 292 |
| MS.gene84761.t1 | AT3G61220 | 54.545 | 264 | 117 | 3 | 2 | 262 | 64 | 327 | 9.84e-99 | 292 |
| MS.gene84761.t1 | AT2G24190 | 53.030 | 264 | 121 | 3 | 2 | 262 | 33 | 296 | 2.33e-94 | 280 |
| MS.gene84761.t1 | AT2G24190 | 53.030 | 264 | 121 | 3 | 2 | 262 | 38 | 301 | 3.22e-94 | 280 |
| MS.gene84761.t1 | AT1G01800 | 52.918 | 257 | 117 | 3 | 2 | 254 | 31 | 287 | 4.96e-91 | 271 |
| MS.gene84761.t1 | AT1G01800 | 51.515 | 198 | 94 | 1 | 59 | 254 | 55 | 252 | 1.35e-67 | 210 |
| MS.gene84761.t1 | AT5G51030 | 34.191 | 272 | 147 | 5 | 2 | 262 | 64 | 314 | 5.18e-48 | 162 |
| MS.gene84761.t1 | AT3G59710 | 36.015 | 261 | 142 | 7 | 2 | 258 | 55 | 294 | 4.70e-45 | 154 |
| MS.gene84761.t1 | AT3G59710 | 36.047 | 258 | 140 | 7 | 2 | 255 | 45 | 281 | 6.09e-45 | 153 |
| MS.gene84761.t1 | AT3G59710 | 36.015 | 261 | 142 | 7 | 2 | 258 | 74 | 313 | 1.32e-44 | 153 |
| MS.gene84761.t1 | AT5G61830 | 35.531 | 273 | 145 | 5 | 2 | 262 | 63 | 316 | 4.50e-42 | 146 |
| MS.gene84761.t1 | AT5G61830 | 35.531 | 273 | 145 | 5 | 2 | 262 | 63 | 316 | 4.50e-42 | 146 |
Find 0 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTATTATTTTTAATT+CGG | - | 56129:244796-244815 | MS.gene84761:intergenic | 0.0% |
| !!! | CTATTTTTAAAAATTATTGA+CGG | - | 56129:244600-244619 | MS.gene84761:intergenic | 10.0% |
| !! | AATGCAAAAAATAATTATAG+AGG | - | 56129:244735-244754 | MS.gene84761:intergenic | 15.0% |
| !! | ATGCAAAAAATAATTATAGA+GGG | - | 56129:244734-244753 | MS.gene84761:intergenic | 15.0% |
| !! | ATTAAGTTTATTTACACATT+TGG | + | 56129:242792-242811 | MS.gene84761:intron | 15.0% |
| !!! | AAATTTTCAAAAGCATATAT+AGG | + | 56129:243624-243643 | MS.gene84761:intron | 15.0% |
| !!! | ATTTATTTTTATAGAACACA+AGG | + | 56129:243699-243718 | MS.gene84761:intron | 15.0% |
| !!! | TACAACTTGTTAAAAAAAAT+AGG | - | 56129:243587-243606 | MS.gene84761:intergenic | 15.0% |
| !! | AAAGACAAAAAATGATTACA+TGG | + | 56129:244227-244246 | MS.gene84761:intron | 20.0% |
| !! | AACAAACATGAAACAATTAA+AGG | + | 56129:243543-243562 | MS.gene84761:intron | 20.0% |
| !! | AAGATTCAAAATTGCATTAT+TGG | + | 56129:244652-244671 | MS.gene84761:intron | 20.0% |
| !! | AATTTGATGAATTCTTATAG+TGG | - | 56129:244627-244646 | MS.gene84761:intergenic | 20.0% |
| !! | ACAAGTTAAGAAGAAAAAAT+CGG | - | 56129:242766-242785 | MS.gene84761:intergenic | 20.0% |
| !! | ATCGTAAGATAAATATAGTT+TGG | - | 56129:243974-243993 | MS.gene84761:intergenic | 20.0% |
| !! | GAAAATAATAAATTACTGTC+TGG | - | 56129:244853-244872 | MS.gene84761:intergenic | 20.0% |
| !!! | AAGTGATTTTGATTTTAACT+AGG | + | 56129:243859-243878 | MS.gene84761:intron | 20.0% |
| !!! | TGATTATTTTCTAGACAAAA+TGG | - | 56129:244477-244496 | MS.gene84761:intergenic | 20.0% |
| !!! | TTTTTGAAAGATTACAAAGA+AGG | + | 56129:244975-244994 | MS.gene84761:CDS | 20.0% |
| ! | AACGTTACAAATGAAAAACT+TGG | + | 56129:244936-244955 | MS.gene84761:CDS | 25.0% |
| ! | AAGGTTGTGAATATTCATAA+AGG | + | 56129:243718-243737 | MS.gene84761:intron | 25.0% |
| ! | AGTTCATCAAAATCCAATTT+GGG | + | 56129:242705-242724 | MS.gene84761:CDS | 25.0% |
| ! | ATATAAAAGATGACTAGAGA+TGG | - | 56129:243086-243105 | MS.gene84761:intergenic | 25.0% |
| ! | ATGATGATAAATAGTAGTCA+GGG | + | 56129:243787-243806 | MS.gene84761:intron | 25.0% |
| ! | ATTCAAAATTGCATTATTGG+CGG | + | 56129:244655-244674 | MS.gene84761:intron | 25.0% |
| ! | CATCAAATAATGAATTGTTC+TGG | + | 56129:243910-243929 | MS.gene84761:intron | 25.0% |
| ! | GATATATCAGCTTTACTTAA+CGG | - | 56129:243279-243298 | MS.gene84761:intergenic | 25.0% |
| ! | TAAACTGAAAGGATAAAAGA+AGG | - | 56129:244875-244894 | MS.gene84761:intergenic | 25.0% |
| ! | TCACAAATAAAACTTACTTG+CGG | - | 56129:244140-244159 | MS.gene84761:intergenic | 25.0% |
| ! | TGAATAATCCTTCATAATGT+AGG | + | 56129:244761-244780 | MS.gene84761:intron | 25.0% |
| ! | TGTAAAAAAAATAGACCAGA+AGG | - | 56129:245227-245246 | MS.gene84761:intergenic | 25.0% |
| ! | TGTGTAGAAATAAACTTCTT+TGG | + | 56129:244332-244351 | MS.gene84761:CDS | 25.0% |
| !! | AATTGTTGAGATTTTCTACA+TGG | - | 56129:243662-243681 | MS.gene84761:intergenic | 25.0% |
| !! | ACATAAAAACTTTGGCTTAA+CGG | - | 56129:243256-243275 | MS.gene84761:intergenic | 25.0% |
| !! | ATTTACACATTTGGAATCAT+TGG | + | 56129:242801-242820 | MS.gene84761:intron | 25.0% |
| !! | CTTAATTTTGTAAGATCCTA+AGG | + | 56129:244522-244541 | MS.gene84761:intron | 25.0% |
| !! | TCTGAAACTTAGAAACTTAA+AGG | + | 56129:243510-243529 | MS.gene84761:intron | 25.0% |
| !!! | ACAAATCAATTTTGGCTTAA+CGG | + | 56129:243376-243395 | MS.gene84761:intron | 25.0% |
| !!! | GTTTATTTCTACACATTCTT+CGG | - | 56129:244327-244346 | MS.gene84761:intergenic | 25.0% |
| !!! | TGATTTGATTTTGTAGGTAA+GGG | + | 56129:244253-244272 | MS.gene84761:intron | 25.0% |
| !!! | TGGTATTGATTTGATTTTGT+AGG | + | 56129:244247-244266 | MS.gene84761:intron | 25.0% |
| !!! | TTGATTTGATTTTGTAGGTA+AGG | + | 56129:244252-244271 | MS.gene84761:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | - | 56129:243423-243442 | MS.gene84761:intergenic | 25.0% |
| ACTAAAGAAGAAACACTTGT+AGG | - | 56129:242683-242702 | MS.gene84761:intergenic | 30.0% | |
| ACTACTTTCCTACATTATGA+AGG | - | 56129:244772-244791 | MS.gene84761:intergenic | 30.0% | |
| ACTGATATTAACGAGATGAA+AGG | + | 56129:245137-245156 | MS.gene84761:CDS | 30.0% | |
| ATATCAGTCTTAACAAAGTC+AGG | - | 56129:245125-245144 | MS.gene84761:intergenic | 30.0% | |
| ATGAAACAATTAAAGGACCT+GGG | + | 56129:243550-243569 | MS.gene84761:intron | 30.0% | |
| ATTTAGACCCTCAGTAATTA+CGG | + | 56129:244678-244697 | MS.gene84761:intron | 30.0% | |
| CAAATTAATCTTCAGATTGC+AGG | - | 56129:244204-244223 | MS.gene84761:intergenic | 30.0% | |
| CATGATGATAAATAGTAGTC+AGG | + | 56129:243786-243805 | MS.gene84761:intron | 30.0% | |
| CTAAAGAAGAAACACTTGTA+GGG | - | 56129:242682-242701 | MS.gene84761:intergenic | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | 56129:243451-243470 | MS.gene84761:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | - | 56129:243470-243451 | MS.gene84761:intergenic | 30.0% | |
| CTGATATTAACGAGATGAAA+GGG | + | 56129:245138-245157 | MS.gene84761:CDS | 30.0% | |
| CTGCAATCTGAAGATTAATT+TGG | + | 56129:244202-244221 | MS.gene84761:intron | 30.0% | |
| GAAACAAACGTGAAACTTAA+AGG | - | 56129:243152-243171 | MS.gene84761:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | 56129:243422-243441 | MS.gene84761:intron | 30.0% | |
| GAGTTCATCAAAATCCAATT+TGG | + | 56129:242704-242723 | MS.gene84761:CDS | 30.0% | |
| GTAAGATCCTAAGGTTTATT+TGG | + | 56129:244531-244550 | MS.gene84761:intron | 30.0% | |
| GTAGAAAGTTTGAAAGAGTT+GGG | + | 56129:242614-242633 | MS.gene84761:CDS | 30.0% | |
| TATCAGTCTTAACAAAGTCA+GGG | - | 56129:245124-245143 | MS.gene84761:intergenic | 30.0% | |
| TATGTTAACTTTCCGATTCT+CGG | - | 56129:244025-244044 | MS.gene84761:intergenic | 30.0% | |
| TGATGATAAATAGTAGTCAG+GGG | + | 56129:243788-243807 | MS.gene84761:intron | 30.0% | |
| TGGAGAGAATGTTGTTAAAA+AGG | + | 56129:242864-242883 | MS.gene84761:CDS | 30.0% | |
| TGTAGAAAGTTTGAAAGAGT+TGG | + | 56129:242613-242632 | MS.gene84761:CDS | 30.0% | |
| TTAACTAGGTTATTAAGCTC+AGG | + | 56129:243873-243892 | MS.gene84761:intron | 30.0% | |
| TTCCACCTAAAAATTGAACT+CGG | - | 56129:243941-243960 | MS.gene84761:intergenic | 30.0% | |
| ! | AGATTCCGAGTTCAATTTTT+AGG | + | 56129:243933-243952 | MS.gene84761:intron | 30.0% |
| ! | AGGGTTTTTCTGCATTATTT+AGG | - | 56129:244715-244734 | MS.gene84761:intergenic | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | 56129:243174-243193 | MS.gene84761:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | 56129:243193-243174 | MS.gene84761:intergenic | 30.0% |
| ! | CAAAAGCATATATAGGTTGT+TGG | + | 56129:243631-243650 | MS.gene84761:intron | 30.0% |
| ! | CTTAACGGACATAAAAACTT+TGG | - | 56129:243264-243283 | MS.gene84761:intergenic | 30.0% |
| ! | GGGTTTTTCTGCATTATTTA+GGG | - | 56129:244714-244733 | MS.gene84761:intergenic | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | 56129:243185-243204 | MS.gene84761:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | 56129:243204-243185 | MS.gene84761:intergenic | 30.0% |
| !! | CTTAACGGACAAATCAATTT+TGG | + | 56129:243368-243387 | MS.gene84761:intron | 30.0% |
| !! | GATTTGATTTTGTAGGTAAG+GGG | + | 56129:244254-244273 | MS.gene84761:intron | 30.0% |
| AAGCATATATAGGTTGTTGG+AGG | + | 56129:243634-243653 | MS.gene84761:intron | 35.0% | |
| AAGCTGATATATCCGTTAAG+TGG | + | 56129:243286-243305 | MS.gene84761:intron | 35.0% | |
| ACTGCTAGAAATGAGAAAAG+AGG | + | 56129:242581-242600 | MS.gene84761:CDS | 35.0% | |
| AGATATCAAGCTTCCCAAAT+TGG | - | 56129:242721-242740 | MS.gene84761:intergenic | 35.0% | |
| AGCTGATATATCCGTTAAGT+GGG | + | 56129:243287-243306 | MS.gene84761:intron | 35.0% | |
| ATGTTAACTTTCCGATTCTC+GGG | - | 56129:244024-244043 | MS.gene84761:intergenic | 35.0% | |
| ATTTGGGAAGCTTGATATCT+TGG | + | 56129:242721-242740 | MS.gene84761:CDS | 35.0% | |
| CATGAAACAATTAAAGGACC+TGG | + | 56129:243549-243568 | MS.gene84761:intron | 35.0% | |
| CCAAAACAAACTCGAAACTT+AGG | - | 56129:243212-243231 | MS.gene84761:intergenic | 35.0% | |
| CTCATTTGGCATAAACTGAA+AGG | - | 56129:244886-244905 | MS.gene84761:intergenic | 35.0% | |
| GAAAAACCACAAAGTCAGAA+AGG | - | 56129:242640-242659 | MS.gene84761:intergenic | 35.0% | |
| GTTATCAAATCCAACCAAGA+TGG | + | 56129:243034-243053 | MS.gene84761:intron | 35.0% | |
| GTTTCACGTTTGTTTCAGAT+AGG | + | 56129:243156-243175 | MS.gene84761:intron | 35.0% | |
| TAAGGGGTGAAATATCTGAT+TGG | + | 56129:244270-244289 | MS.gene84761:CDS | 35.0% | |
| TCAGTTTATGCCAAATGAGT+GGG | + | 56129:244887-244906 | MS.gene84761:intron | 35.0% | |
| TGAAACAATTAAAGGACCTG+GGG | + | 56129:243551-243570 | MS.gene84761:intron | 35.0% | |
| TGTTGTGCCAAATAAACCTT+AGG | - | 56129:244541-244560 | MS.gene84761:intergenic | 35.0% | |
| TTCAGTTTATGCCAAATGAG+TGG | + | 56129:244886-244905 | MS.gene84761:intron | 35.0% | |
| TTTAGACCCTCAGTAATTAC+GGG | + | 56129:244679-244698 | MS.gene84761:intron | 35.0% | |
| ! | AACAAACGTTGGCCAATTTT+TGG | - | 56129:245012-245031 | MS.gene84761:intergenic | 35.0% |
| ! | ACATTTGGAATCATTGGTGT+AGG | + | 56129:242807-242826 | MS.gene84761:intron | 35.0% |
| ! | AGATTACAAAGAAGGAGCAT+TGG | + | 56129:244983-245002 | MS.gene84761:CDS | 35.0% |
| ! | TAAAAACTTTGGCTTAACGG+AGG | - | 56129:243253-243272 | MS.gene84761:intergenic | 35.0% |
| !! | AAGCATCGTTTAGTCTTGAT+CGG | + | 56129:242947-242966 | MS.gene84761:intron | 35.0% |
| !! | GAGCATTGGAAACCAAAAAT+TGG | + | 56129:244997-245016 | MS.gene84761:CDS | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | - | 56129:243418-243437 | MS.gene84761:intergenic | 35.0% |
| !! | GTTTGTTTCTGGTTACACAA+TGG | + | 56129:245025-245044 | MS.gene84761:CDS | 35.0% |
| !! | TTCCGAGTTCAATTTTTAGG+TGG | + | 56129:243936-243955 | MS.gene84761:intron | 35.0% |
| !!! | CCTAAGTTTCGAGTTTGTTT+TGG | + | 56129:243209-243228 | MS.gene84761:intron | 35.0% |
| !!! | GGGTTTTTAAGCATTGATGA+AGG | + | 56129:245158-245177 | MS.gene84761:CDS | 35.0% |
| AATTGGCCAACGTTTGTTTC+TGG | + | 56129:245014-245033 | MS.gene84761:CDS | 40.0% | |
| ACACAATTTATGCGGAAACG+AGG | - | 56129:245098-245117 | MS.gene84761:intergenic | 40.0% | |
| AGAGGAGACATTAACAATCC+TGG | - | 56129:244411-244430 | MS.gene84761:intergenic | 40.0% | |
| ATATATCCGTTAAGTGGGTG+AGG | + | 56129:243292-243311 | MS.gene84761:intron | 40.0% | |
| ATGCTGACAACAAGAATGCA+TGG | - | 56129:242925-242944 | MS.gene84761:intergenic | 40.0% | |
| ATGTGTCAGTAGCATATCCA+CGG | - | 56129:244571-244590 | MS.gene84761:intergenic | 40.0% | |
| CACAATTTATGCGGAAACGA+GGG | - | 56129:245097-245116 | MS.gene84761:intergenic | 40.0% | |
| CAGGGCATACACAATTTATG+CGG | - | 56129:245106-245125 | MS.gene84761:intergenic | 40.0% | |
| GAAGTAGATAGTTGGAGCAA+GGG | - | 56129:244386-244405 | MS.gene84761:intergenic | 40.0% | |
| GAGGAGACATTAACAATCCT+GGG | - | 56129:244410-244429 | MS.gene84761:intergenic | 40.0% | |
| GGTTTATTTGGCACAACACA+CGG | + | 56129:244543-244562 | MS.gene84761:intron | 40.0% | |
| GTGTAACCAGAAACAAACGT+TGG | - | 56129:245023-245042 | MS.gene84761:intergenic | 40.0% | |
| TGAAGTAGATAGTTGGAGCA+AGG | - | 56129:244387-244406 | MS.gene84761:intergenic | 40.0% | |
| ! | CCAGATCAACTTTGGCTTAA+CGG | + | 56129:243353-243372 | MS.gene84761:intron | 40.0% |
| ! | TAAGCCAAAGTTGATCTGGT+CGG | - | 56129:243352-243371 | MS.gene84761:intergenic | 40.0% |
| !! | ATCGTTTAGTCTTGATCGGA+CGG | + | 56129:242951-242970 | MS.gene84761:intron | 40.0% |
| !! | CGATCGATTCGAGATTACTA+TGG | + | 56129:243990-244009 | MS.gene84761:intron | 40.0% |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | - | 56129:243478-243497 | MS.gene84761:intergenic | 40.0% |
| !! | TTTTTAGCCAAATACCTCGC+TGG | + | 56129:243124-243143 | MS.gene84761:intron | 40.0% |
| AACAATTAAAGGACCTGGGG+AGG | + | 56129:243554-243573 | MS.gene84761:intron | 45.0% | |
| AATAGGTCAAATACCTCCCC+AGG | - | 56129:243570-243589 | MS.gene84761:intergenic | 45.0% | |
| AGACCACCCGTAATTACTGA+GGG | - | 56129:244688-244707 | MS.gene84761:intergenic | 45.0% | |
| CATCATCTGGCAACAATGCT+AGG | - | 56129:245202-245221 | MS.gene84761:intergenic | 45.0% | |
| CTAGCATTGTTGCCAGATGA+TGG | + | 56129:245200-245219 | MS.gene84761:CDS | 45.0% | |
| CTCTAGACGTGGACAATTCA+AGG | + | 56129:244427-244446 | MS.gene84761:CDS | 45.0% | |
| CTTAACGGAGGTTGACAGAA+AGG | - | 56129:243241-243260 | MS.gene84761:intergenic | 45.0% | |
| CTTGAATTGTCCACGTCTAG+AGG | - | 56129:244429-244448 | MS.gene84761:intergenic | 45.0% | |
| GAAACTTAAAGGATCCAGCG+AGG | - | 56129:243141-243160 | MS.gene84761:intergenic | 45.0% | |
| GGGAAGCTTGATATCTTGGT+GGG | + | 56129:242725-242744 | MS.gene84761:intron | 45.0% | |
| GTTAATGTCTCCTCTAGACG+TGG | + | 56129:244416-244435 | MS.gene84761:CDS | 45.0% | |
| GTTGCTGGAGGAATAGTGAA+TGG | + | 56129:242844-242863 | MS.gene84761:CDS | 45.0% | |
| TAGACCACCCGTAATTACTG+AGG | - | 56129:244689-244708 | MS.gene84761:intergenic | 45.0% | |
| TCCAACTATCTACTTCACCC+AGG | + | 56129:244390-244409 | MS.gene84761:CDS | 45.0% | |
| TCCTGGGTGAAGTAGATAGT+TGG | - | 56129:244394-244413 | MS.gene84761:intergenic | 45.0% | |
| TGGGAAGCTTGATATCTTGG+TGG | + | 56129:242724-242743 | MS.gene84761:intron | 45.0% | |
| TGGTCATCTTTCCCGAGAAT+CGG | + | 56129:244010-244029 | MS.gene84761:intron | 45.0% | |
| TTGGTGTAGGTGAACAATGC+TGG | + | 56129:242820-242839 | MS.gene84761:intron | 45.0% | |
| ! | AAAGGATCCAGCGAGGTATT+TGG | - | 56129:243134-243153 | MS.gene84761:intergenic | 45.0% |
| ! | AAGCCAAAGTTGATCTGGTC+GGG | - | 56129:243351-243370 | MS.gene84761:intergenic | 45.0% |
| ! | AGATGACTTGCACACCATCT+TGG | - | 56129:243051-243070 | MS.gene84761:intergenic | 45.0% |
| ! | CCGTTAAGCCAAAGTTGATC+TGG | - | 56129:243356-243375 | MS.gene84761:intergenic | 45.0% |
| !! | TTTAAATAAATTTAAAAAGT+AGG | + | 56129:242999-243018 | MS.gene84761:intron | 5.0% |
| !!! | AAATGATTTTAAATTTTAAA+TGG | + | 56129:244051-244070 | MS.gene84761:intron | 5.0% |
| !!! | CAAAAAAAATAATTTTTTTT+AGG | - | 56129:244109-244128 | MS.gene84761:intergenic | 5.0% |
| !!! | CTAAAAAAAATTATTTTTTT+TGG | + | 56129:244107-244126 | MS.gene84761:intron | 5.0% |
| ACTCCTCTTGCCCACTCATT+TGG | - | 56129:244900-244919 | MS.gene84761:intergenic | 50.0% | |
| AGACCAGAAGGACCATCATC+TGG | - | 56129:245215-245234 | MS.gene84761:intergenic | 50.0% | |
| AGACCCTCAGTAATTACGGG+TGG | + | 56129:244682-244701 | MS.gene84761:intron | 50.0% | |
| AGGTGGTTCTCTCTGACACT+TGG | + | 56129:243312-243331 | MS.gene84761:intron | 50.0% | |
| ATGCCAAATGAGTGGGCAAG+AGG | + | 56129:244894-244913 | MS.gene84761:CDS | 50.0% | |
| GAACCACCTCACCCACTTAA+CGG | - | 56129:243301-243320 | MS.gene84761:intergenic | 50.0% | |
| GACTTGCACACCATCTTGGT+TGG | - | 56129:243047-243066 | MS.gene84761:intergenic | 50.0% | |
| GGCAACAATGCTAGGTTCAC+AGG | - | 56129:245194-245213 | MS.gene84761:intergenic | 50.0% | |
| GTTGGGCCTTTCTGACTTTG+TGG | + | 56129:242631-242650 | MS.gene84761:CDS | 50.0% | |
| TATCCGTTAAGTGGGTGAGG+TGG | + | 56129:243295-243314 | MS.gene84761:intron | 50.0% | |
| TTCCCCGACCAGATCAACTT+TGG | + | 56129:243345-243364 | MS.gene84761:intron | 50.0% | |
| ! | AGCCAAAGTTGATCTGGTCG+GGG | - | 56129:243350-243369 | MS.gene84761:intergenic | 50.0% |
| ! | TTGCCAGATGATGGTCCTTC+TGG | + | 56129:245209-245228 | MS.gene84761:CDS | 50.0% |
| !! | AACAATGCTGGTGTTGCTGG+AGG | + | 56129:242832-242851 | MS.gene84761:CDS | 50.0% |
| !! | GTGAACAATGCTGGTGTTGC+TGG | + | 56129:242829-242848 | MS.gene84761:CDS | 50.0% |
| TGGCACAACACACGGTACCG+TGG | + | 56129:244551-244570 | MS.gene84761:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56129 | gene | 242569 | 245271 | 242569 | ID=MS.gene84761 |
| 56129 | mRNA | 242569 | 245271 | 242569 | ID=MS.gene84761.t1;Parent=MS.gene84761 |
| 56129 | exon | 242569 | 242742 | 242569 | ID=MS.gene84761.t1.exon1;Parent=MS.gene84761.t1 |
| 56129 | CDS | 242569 | 242742 | 242569 | ID=cds.MS.gene84761.t1;Parent=MS.gene84761.t1 |
| 56129 | exon | 242829 | 242885 | 242829 | ID=MS.gene84761.t1.exon2;Parent=MS.gene84761.t1 |
| 56129 | CDS | 242829 | 242885 | 242829 | ID=cds.MS.gene84761.t1;Parent=MS.gene84761.t1 |
| 56129 | exon | 244269 | 244448 | 244269 | ID=MS.gene84761.t1.exon3;Parent=MS.gene84761.t1 |
| 56129 | CDS | 244269 | 244448 | 244269 | ID=cds.MS.gene84761.t1;Parent=MS.gene84761.t1 |
| 56129 | exon | 244891 | 245271 | 244891 | ID=MS.gene84761.t1.exon4;Parent=MS.gene84761.t1 |
| 56129 | CDS | 244891 | 245271 | 244891 | ID=cds.MS.gene84761.t1;Parent=MS.gene84761.t1 |
| Gene Sequence |
| Protein sequence |
