Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056715.t1 | RHN39973.1 | 96.5 | 282 | 10 | 0 | 1 | 282 | 1 | 282 | 2.30E-152 | 548.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056715.t1 | Q9M2E2 | 55.8 | 285 | 123 | 3 | 1 | 282 | 1 | 285 | 8.6e-87 | 321.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056715.t1 | A0A396GH94 | 96.5 | 282 | 10 | 0 | 1 | 282 | 1 | 282 | 1.7e-152 | 548.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene056715 | 0.847193 | 1.35E-59 | -1.69E-46 |
| MS.gene054277 | MS.gene056715 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene056714 | MS.gene056715 | 0.848991 | 4.31E-60 | -1.69E-46 |
| MS.gene056715 | MS.gene056920 | 0.815031 | 1.14E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene059955 | 0.807069 | 6.05E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene060087 | 0.831182 | 1.93E-55 | -1.69E-46 |
| MS.gene056715 | MS.gene063988 | 0.807384 | 5.19E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene065724 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene06593 | 0.804908 | 1.72E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene066602 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene06805 | 0.804539 | 2.06E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene069482 | 0.801339 | 9.44E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene073526 | 0.806297 | 8.81E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene24862 | 0.805329 | 1.41E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene28548 | 0.819692 | 1.02E-52 | -1.69E-46 |
| MS.gene056715 | MS.gene28594 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene38435 | 0.812732 | 3.66E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene42005 | 0.841503 | 4.57E-58 | -1.69E-46 |
| MS.gene056715 | MS.gene44958 | 0.80328 | 3.76E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene47721 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene50420 | 0.814518 | 1.48E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene54029 | 0.815224 | 1.03E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene54577 | 0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene056715 | MS.gene60581 | 0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene64584 | 0.806946 | 6.42E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene71342 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene71346 | 0.803056 | 4.18E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene75472 | 0.801328 | 9.48E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene78818 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene80293 | 0.81478 | 1.29E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene80468 | 0.814164 | 1.77E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene80744 | 0.8326 | 8.62E-56 | -1.69E-46 |
| MS.gene056715 | MS.gene81504 | 0.829533 | 4.88E-55 | -1.69E-46 |
| MS.gene056715 | MS.gene81505 | 0.832927 | 7.15E-56 | -1.69E-46 |
| MS.gene056715 | MS.gene81506 | 0.829137 | 6.09E-55 | -1.69E-46 |
| MS.gene056715 | MS.gene81770 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene81774 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene84761 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene87056 | 0.80776 | 4.32E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene87222 | 0.813806 | 2.12E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene87346 | 0.808811 | 2.58E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene87750 | 0.801675 | 8.05E-49 | -1.69E-46 |
| MS.gene056715 | MS.gene98920 | 0.844203 | 8.75E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056715.t1 | MTR_8g031900 | 96.454 | 282 | 10 | 0 | 1 | 282 | 1 | 282 | 0.0 | 559 |
| MS.gene056715.t1 | MTR_8g031850 | 81.915 | 282 | 13 | 1 | 1 | 282 | 1 | 244 | 4.97e-165 | 458 |
| MS.gene056715.t1 | MTR_7g076665 | 67.606 | 284 | 90 | 2 | 1 | 282 | 1 | 284 | 5.15e-133 | 378 |
| MS.gene056715.t1 | MTR_8g032000 | 57.840 | 287 | 116 | 2 | 1 | 282 | 1 | 287 | 5.69e-118 | 340 |
| MS.gene056715.t1 | MTR_8g032010 | 57.491 | 287 | 117 | 2 | 1 | 282 | 1 | 287 | 1.95e-117 | 339 |
| MS.gene056715.t1 | MTR_8g031990 | 57.143 | 287 | 118 | 2 | 1 | 282 | 1 | 287 | 1.15e-116 | 337 |
| MS.gene056715.t1 | MTR_7g076660 | 58.865 | 282 | 109 | 3 | 1 | 282 | 1 | 275 | 2.04e-116 | 336 |
| MS.gene056715.t1 | MTR_7g076660 | 58.696 | 276 | 107 | 3 | 7 | 282 | 8 | 276 | 4.61e-114 | 330 |
| MS.gene056715.t1 | MTR_7g076655 | 57.092 | 282 | 114 | 3 | 1 | 282 | 1 | 275 | 3.19e-112 | 325 |
| MS.gene056715.t1 | MTR_8g032020 | 56.643 | 286 | 118 | 3 | 3 | 282 | 4 | 289 | 2.47e-111 | 323 |
| MS.gene056715.t1 | MTR_8g031630 | 57.143 | 287 | 117 | 4 | 1 | 282 | 1 | 286 | 6.00e-109 | 317 |
| MS.gene056715.t1 | MTR_8g031910 | 56.537 | 283 | 115 | 4 | 1 | 282 | 1 | 276 | 6.34e-109 | 317 |
| MS.gene056715.t1 | MTR_8g031600 | 55.903 | 288 | 120 | 3 | 1 | 282 | 1 | 287 | 1.16e-108 | 317 |
| MS.gene056715.t1 | MTR_8g031960 | 55.160 | 281 | 121 | 2 | 7 | 282 | 8 | 288 | 3.85e-107 | 313 |
| MS.gene056715.t1 | MTR_8g031980 | 54.007 | 287 | 127 | 2 | 1 | 282 | 1 | 287 | 7.99e-107 | 312 |
| MS.gene056715.t1 | MTR_8g031940 | 54.514 | 288 | 125 | 3 | 1 | 282 | 1 | 288 | 1.13e-106 | 311 |
| MS.gene056715.t1 | MTR_7g076660 | 58.366 | 257 | 100 | 3 | 26 | 282 | 2 | 251 | 1.40e-104 | 305 |
| MS.gene056715.t1 | MTR_8g031610 | 55.714 | 280 | 117 | 4 | 8 | 282 | 6 | 283 | 1.35e-102 | 301 |
| MS.gene056715.t1 | MTR_8g031650 | 56.475 | 278 | 115 | 4 | 10 | 282 | 104 | 380 | 2.24e-101 | 301 |
| MS.gene056715.t1 | MTR_8g031650 | 52.941 | 102 | 46 | 2 | 165 | 264 | 2 | 103 | 3.03e-27 | 109 |
| MS.gene056715.t1 | MTR_5g062280 | 52.982 | 285 | 130 | 2 | 1 | 282 | 1 | 284 | 1.36e-100 | 296 |
| MS.gene056715.t1 | MTR_8g031650 | 56.877 | 269 | 111 | 3 | 1 | 264 | 1 | 269 | 6.05e-100 | 303 |
| MS.gene056715.t1 | MTR_8g031650 | 56.475 | 278 | 115 | 4 | 10 | 282 | 270 | 546 | 1.02e-99 | 303 |
| MS.gene056715.t1 | MTR_3g079320 | 50.000 | 288 | 133 | 4 | 5 | 282 | 9 | 295 | 6.20e-90 | 270 |
| MS.gene056715.t1 | MTR_5g083430 | 60.622 | 193 | 56 | 1 | 90 | 282 | 1 | 173 | 1.20e-77 | 234 |
| MS.gene056715.t1 | MTR_7g106800 | 45.907 | 281 | 97 | 3 | 7 | 282 | 9 | 239 | 3.58e-75 | 231 |
| MS.gene056715.t1 | MTR_8g032030 | 54.854 | 206 | 79 | 5 | 1 | 197 | 1 | 201 | 4.24e-63 | 198 |
| MS.gene056715.t1 | MTR_3g098470 | 37.895 | 285 | 145 | 5 | 9 | 282 | 37 | 300 | 1.25e-58 | 189 |
| MS.gene056715.t1 | MTR_1g031180 | 36.491 | 285 | 149 | 5 | 9 | 282 | 42 | 305 | 7.66e-55 | 180 |
| MS.gene056715.t1 | MTR_8g096060 | 32.982 | 285 | 156 | 5 | 9 | 282 | 39 | 299 | 1.70e-46 | 158 |
| MS.gene056715.t1 | MTR_4g087460 | 35.517 | 290 | 151 | 9 | 9 | 282 | 24 | 293 | 5.92e-45 | 154 |
| MS.gene056715.t1 | MTR_6g041980 | 30.380 | 158 | 81 | 3 | 10 | 162 | 70 | 203 | 3.32e-11 | 63.2 |
| MS.gene056715.t1 | MTR_6g041980 | 30.380 | 158 | 81 | 3 | 10 | 162 | 70 | 203 | 4.24e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056715.t1 | AT3G61220 | 55.789 | 285 | 123 | 3 | 1 | 282 | 1 | 285 | 1.54e-112 | 327 |
| MS.gene056715.t1 | AT3G61220 | 56.272 | 279 | 119 | 3 | 7 | 282 | 14 | 292 | 1.03e-110 | 322 |
| MS.gene056715.t1 | AT3G61220 | 56.272 | 279 | 119 | 3 | 7 | 282 | 38 | 316 | 2.62e-110 | 322 |
| MS.gene056715.t1 | AT2G24190 | 54.035 | 285 | 128 | 3 | 1 | 282 | 1 | 285 | 3.23e-108 | 315 |
| MS.gene056715.t1 | AT2G24190 | 54.122 | 279 | 125 | 3 | 7 | 282 | 12 | 290 | 3.39e-106 | 311 |
| MS.gene056715.t1 | AT1G01800 | 53.357 | 283 | 128 | 3 | 4 | 282 | 2 | 284 | 3.49e-102 | 300 |
| MS.gene056715.t1 | AT1G01800 | 51.282 | 195 | 93 | 1 | 90 | 282 | 55 | 249 | 8.54e-65 | 204 |
| MS.gene056715.t1 | AT5G51030 | 35.986 | 289 | 153 | 5 | 5 | 282 | 36 | 303 | 7.79e-56 | 182 |
| MS.gene056715.t1 | AT3G59710 | 38.462 | 273 | 144 | 6 | 9 | 278 | 21 | 272 | 2.73e-54 | 178 |
| MS.gene056715.t1 | AT3G59710 | 38.462 | 273 | 144 | 6 | 9 | 278 | 31 | 282 | 4.19e-54 | 177 |
| MS.gene056715.t1 | AT3G59710 | 38.462 | 273 | 144 | 6 | 9 | 278 | 50 | 301 | 1.25e-53 | 177 |
| MS.gene056715.t1 | AT5G61830 | 37.410 | 278 | 144 | 4 | 9 | 275 | 39 | 297 | 4.09e-49 | 165 |
| MS.gene056715.t1 | AT5G61830 | 37.410 | 278 | 144 | 4 | 9 | 275 | 39 | 297 | 4.09e-49 | 165 |
| MS.gene056715.t1 | AT5G50600 | 32.680 | 153 | 84 | 4 | 10 | 162 | 51 | 184 | 3.16e-12 | 66.2 |
| MS.gene056715.t1 | AT5G50700 | 32.680 | 153 | 84 | 4 | 10 | 162 | 51 | 184 | 3.16e-12 | 66.2 |
Find 56 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGCCAACATTTGTTTC+TGG | 0.189389 | 8.4:+65208449 | MS.gene056715:CDS |
| TTATGGGATATGCAAGAAAT+TGG | 0.259442 | 8.4:+65206830 | MS.gene056715:CDS |
| GAGTTCATCAAAATCAAATT+TGG | 0.260925 | 8.4:+65207002 | MS.gene056715:CDS |
| ACTAAAGAAGAAACACTTAT+AGG | 0.263056 | 8.4:-65206978 | None:intergenic |
| TGGAGAGAATGTTGTTAAAA+AGG | 0.269327 | 8.4:+65207165 | MS.gene056715:CDS |
| ATTTGGAAAACTTGATATCT+TGG | 0.275930 | 8.4:+65207019 | MS.gene056715:CDS |
| TTGCCAGATGATGGCCCTTC+TGG | 0.284677 | 8.4:+65208644 | MS.gene056715:CDS |
| GCTAATAAAGGAATTGGTTA+TGG | 0.301681 | 8.4:+65206813 | MS.gene056715:CDS |
| GTGAACAATGCTGGTGTTGC+TGG | 0.318704 | 8.4:+65207130 | MS.gene056715:CDS |
| ATATCAGTCTTAACAAAATC+AGG | 0.322498 | 8.4:-65208557 | None:intergenic |
| TGTGTTGAAATAAACTTCTT+TGG | 0.327150 | 8.4:+65207958 | MS.gene056715:CDS |
| TCTAGGTATGCGGTTGTAAC+AGG | 0.331207 | 8.4:+65206789 | MS.gene056715:intron |
| ACTCCTCTTGCCCATTCATT+TGG | 0.361116 | 8.4:-65208332 | None:intergenic |
| TTCAGTTTATGCCAAATGAA+TGG | 0.364367 | 8.4:+65208321 | MS.gene056715:intron |
| GTTGGGCCTTTCTGACTTTG+TGG | 0.371903 | 8.4:+65206929 | MS.gene056715:CDS |
| CTAAAGAAGAAACACTTATA+GGG | 0.376231 | 8.4:-65206977 | None:intergenic |
| ATTGGCTTCAAGAGGTGTTA+TGG | 0.387557 | 8.4:+65206848 | MS.gene056715:CDS |
| CAATGACAGAAGCATCAAAA+AGG | 0.391122 | 8.4:+65206653 | None:intergenic |
| ACAGGAGCTAATAAAGGAAT+TGG | 0.406883 | 8.4:+65206807 | MS.gene056715:CDS |
| GTAGAAAGTTTGAAAGAGTT+GGG | 0.428961 | 8.4:+65206912 | MS.gene056715:CDS |
| TCAGTTTATGCCAAATGAAT+GGG | 0.430236 | 8.4:+65208322 | MS.gene056715:intron |
| GTTTATTTCAACACATTCTT+CGG | 0.435982 | 8.4:-65207950 | None:intergenic |
| CTCTAGACGTGGAAAATTCA+AGG | 0.435985 | 8.4:+65208053 | MS.gene056715:CDS |
| CTAATAAAGGAATTGGTTAT+GGG | 0.437393 | 8.4:+65206814 | MS.gene056715:CDS |
| AGAGGAGACATTAACAATCC+TGG | 0.437672 | 8.4:-65208034 | None:intergenic |
| AGACCAGAAGGGCCATCATC+TGG | 0.442885 | 8.4:-65208647 | None:intergenic |
| GGCAACAATGCTAGGTTGAC+AGG | 0.464101 | 8.4:-65208626 | None:intergenic |
| CTGATATTAATGAGATGAAA+GGG | 0.465202 | 8.4:+65208573 | MS.gene056715:CDS |
| TGTAGAAAGTTTGAAAGAGT+TGG | 0.478130 | 8.4:+65206911 | MS.gene056715:CDS |
| TGAAGTAGATAGTTGGAGAA+GGG | 0.484408 | 8.4:-65208010 | None:intergenic |
| CATCATCTGGCAACAATGCT+AGG | 0.501037 | 8.4:-65208634 | None:intergenic |
| ACTGCTAGAAATGAGAAAAG+AGG | 0.505341 | 8.4:+65206879 | MS.gene056715:CDS |
| GTTGTAACAGGAGCTAATAA+AGG | 0.508918 | 8.4:+65206801 | MS.gene056715:CDS |
| TCCTGGGTGAAGTAGATAGT+TGG | 0.511882 | 8.4:-65208017 | None:intergenic |
| CTAGCATTGTTGCCAGATGA+TGG | 0.516858 | 8.4:+65208635 | MS.gene056715:CDS |
| ACACAATTTATGCGGAAATG+AGG | 0.520903 | 8.4:-65208530 | None:intergenic |
| TAAGGGGTGAAATATCTGAT+TGG | 0.521800 | 8.4:+65207896 | MS.gene056715:CDS |
| AGATTACAAAGAAGGAGCAT+TGG | 0.531996 | 8.4:+65208418 | MS.gene056715:CDS |
| GAGGAGACATTAACAATCCT+GGG | 0.537675 | 8.4:-65208033 | None:intergenic |
| CACAATTTATGCGGAAATGA+GGG | 0.551118 | 8.4:-65208529 | None:intergenic |
| CAGCTTTAAATTCTTACACA+AGG | 0.553733 | 8.4:+65208489 | MS.gene056715:CDS |
| ACTGATATTAATGAGATGAA+AGG | 0.556446 | 8.4:+65208572 | MS.gene056715:CDS |
| GTGAAGTAGATAGTTGGAGA+AGG | 0.564346 | 8.4:-65208011 | None:intergenic |
| GAAGTAGATAGTTGGAGAAG+GGG | 0.573620 | 8.4:-65208009 | None:intergenic |
| GTACCGTAGGTGAACAATGC+TGG | 0.579073 | 8.4:+65207121 | MS.gene056715:intron |
| TAATCTTGTTTCTAGGTATG+CGG | 0.581054 | 8.4:+65206779 | MS.gene056715:intron |
| TATCAGTCTTAACAAAATCA+GGG | 0.582226 | 8.4:-65208556 | None:intergenic |
| TGCAAGAAATTGGCTTCAAG+AGG | 0.591172 | 8.4:+65206840 | MS.gene056715:CDS |
| ATTTGTTTCTGGTTACACAA+TGG | 0.603998 | 8.4:+65208460 | MS.gene056715:CDS |
| ATGCCAAATGAATGGGCAAG+AGG | 0.607172 | 8.4:+65208329 | MS.gene056715:CDS |
| GTTGCTGGAGGAATAGTGAA+TGG | 0.611511 | 8.4:+65207145 | MS.gene056715:CDS |
| TCCAACTATCTACTTCACCC+AGG | 0.646857 | 8.4:+65208016 | MS.gene056715:CDS |
| GTGTAACCAGAAACAAATGT+TGG | 0.648385 | 8.4:-65208455 | None:intergenic |
| AACAATGCTGGTGTTGCTGG+AGG | 0.655043 | 8.4:+65207133 | MS.gene056715:CDS |
| CAGGGCATACACAATTTATG+CGG | 0.666585 | 8.4:-65208538 | None:intergenic |
| GTTAATGTCTCCTCTAGACG+TGG | 0.681942 | 8.4:+65208042 | MS.gene056715:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAGTTTATTTATATT+TGG | + | chr8.4:65207090-65207109 | MS.gene056715:intron | 10.0% |
| !! | CTATTTATAAAAATTATTAC+CGG | - | chr8.4:65208188-65208207 | None:intergenic | 10.0% |
| !! | TTACATTTATATATACTTTA+AGG | - | chr8.4:65208755-65208774 | None:intergenic | 10.0% |
| !!! | ATAAAGTTTTAAGTTTTAAA+TGG | + | chr8.4:65207699-65207718 | MS.gene056715:intron | 10.0% |
| !!! | CTACTTATTTTATATATTTA+AGG | + | chr8.4:65208887-65208906 | MS.gene056715:intron | 10.0% |
| !!! | TTTGAGTAATAAATTTTAAA+TGG | + | chr8.4:65207633-65207652 | MS.gene056715:intron | 10.0% |
| !! | TATATATTTAAGGACTAAAT+TGG | + | chr8.4:65208897-65208916 | MS.gene056715:intron | 15.0% |
| !! | TCAATAATATATATTTGTGT+TGG | + | chr8.4:65207732-65207751 | MS.gene056715:intron | 15.0% |
| !! | TTGACTAAAAAAAAACTTAA+GGG | - | chr8.4:65208815-65208834 | None:intergenic | 15.0% |
| !!! | AAAACTTAAAACTTTATTTG+AGG | - | chr8.4:65207696-65207715 | None:intergenic | 15.0% |
| !!! | ATATACTTTAAGGATTAAAT+TGG | - | chr8.4:65208745-65208764 | None:intergenic | 15.0% |
| !!! | TAATAAATTTTAAATGGTAG+AGG | + | chr8.4:65207639-65207658 | MS.gene056715:intron | 15.0% |
| !!! | TTATTTATATTTGGAATCAT+TGG | + | chr8.4:65207099-65207118 | MS.gene056715:intron | 15.0% |
| !! | AACGTTACAAATGAAAAATT+TGG | + | chr8.4:65208371-65208390 | MS.gene056715:CDS | 20.0% |
| !! | AACTTAAGGAAAAAAACTTA+AGG | + | chr8.4:65208839-65208858 | MS.gene056715:intron | 20.0% |
| !! | AAGACAAAAAAATGATTACA+TGG | + | chr8.4:65207853-65207872 | MS.gene056715:intron | 20.0% |
| !! | ACTTAAGGAAAAAAACTTAA+GGG | + | chr8.4:65208840-65208859 | MS.gene056715:intron | 20.0% |
| !! | CTTGACTAAAAAAAAACTTA+AGG | - | chr8.4:65208816-65208835 | None:intergenic | 20.0% |
| !! | GGAGATAGAAAATTAATTTA+GGG | + | chr8.4:65208918-65208937 | MS.gene056715:intron | 20.0% |
| !! | GTGTCAAATAACATATATAT+TGG | + | chr8.4:65209089-65209108 | MS.gene056715:intron | 20.0% |
| !! | TAATTGCATACATATATGAA+AGG | - | chr8.4:65206719-65206738 | None:intergenic | 20.0% |
| !! | TGGAGATAGAAAATTAATTT+AGG | + | chr8.4:65208917-65208936 | MS.gene056715:intron | 20.0% |
| !!! | ACAAAATTGATGATTTCTTT+TGG | + | chr8.4:65208941-65208960 | MS.gene056715:intron | 20.0% |
| !!! | TTTTAGTCAAGTAAAACTTA+AGG | + | chr8.4:65208825-65208844 | MS.gene056715:intron | 20.0% |
| !!! | TTTTTGAAAGATTACAAAGA+AGG | + | chr8.4:65208410-65208429 | MS.gene056715:CDS | 20.0% |
| ! | AAACATCGTTTAATCTTGAT+CGG | + | chr8.4:65207261-65207280 | MS.gene056715:intron | 25.0% |
| ! | ACTAAAGAAGAAACACTTAT+AGG | - | chr8.4:65206981-65207000 | None:intergenic | 25.0% |
| ! | ACTGATATTAATGAGATGAA+AGG | + | chr8.4:65208572-65208591 | MS.gene056715:CDS | 25.0% |
| ! | ATATCAGTCTTAACAAAATC+AGG | - | chr8.4:65208560-65208579 | None:intergenic | 25.0% |
| ! | ATTAAACGATGTTTATATGC+CGG | - | chr8.4:65207255-65207274 | None:intergenic | 25.0% |
| ! | ATTTGGAAAACTTGATATCT+TGG | + | chr8.4:65207019-65207038 | MS.gene056715:CDS | 25.0% |
| ! | CTAAAGAAGAAACACTTATA+GGG | - | chr8.4:65206980-65206999 | None:intergenic | 25.0% |
| ! | CTAATAAAGGAATTGGTTAT+GGG | + | chr8.4:65206814-65206833 | MS.gene056715:CDS | 25.0% |
| ! | CTGATATTAATGAGATGAAA+GGG | + | chr8.4:65208573-65208592 | MS.gene056715:CDS | 25.0% |
| ! | GAGTTCATCAAAATCAAATT+TGG | + | chr8.4:65207002-65207021 | MS.gene056715:CDS | 25.0% |
| ! | GTTTATTTCAACACATTCTT+CGG | - | chr8.4:65207953-65207972 | None:intergenic | 25.0% |
| ! | TATCAGTCTTAACAAAATCA+GGG | - | chr8.4:65208559-65208578 | None:intergenic | 25.0% |
| ! | TCACAATTAAAACTTACTTG+AGG | - | chr8.4:65207765-65207784 | None:intergenic | 25.0% |
| ! | TGTGTTGAAATAAACTTCTT+TGG | + | chr8.4:65207958-65207977 | MS.gene056715:CDS | 25.0% |
| !! | AAATTTTAAATGGTAGAGGA+TGG | + | chr8.4:65207643-65207662 | MS.gene056715:intron | 25.0% |
| !! | TATTGACTAACAAGTTAAGA+AGG | - | chr8.4:65207075-65207094 | None:intergenic | 25.0% |
| !!! | AAGTTTTAAATGGTAGAGTT+GGG | + | chr8.4:65207709-65207728 | MS.gene056715:intron | 25.0% |
| !!! | CTGCAATCAAAAGATTTTTT+TGG | + | chr8.4:65207827-65207846 | MS.gene056715:intron | 25.0% |
| !!! | TAAGTTTTAAATGGTAGAGT+TGG | + | chr8.4:65207708-65207727 | MS.gene056715:intron | 25.0% |
| !!! | TGATTTGATTTTGTAGGTAA+GGG | + | chr8.4:65207879-65207898 | MS.gene056715:intron | 25.0% |
| !!! | TGGTATTGATTTGATTTTGT+AGG | + | chr8.4:65207873-65207892 | MS.gene056715:intron | 25.0% |
| !!! | TTGATTTGATTTTGTAGGTA+AGG | + | chr8.4:65207878-65207897 | MS.gene056715:intron | 25.0% |
| AAAAAAGAGGCTAAGGAAAA+TGG | - | chr8.4:65206686-65206705 | None:intergenic | 30.0% | |
| ACCTAGAAACAAGATTAACA+AGG | - | chr8.4:65206776-65206795 | None:intergenic | 30.0% | |
| CAATTGTGTAAATATCGTGT+CGG | + | chr8.4:65208224-65208243 | MS.gene056715:intron | 30.0% | |
| CCAGAAACAACACATATAAT+AGG | - | chr8.4:65208992-65209011 | None:intergenic | 30.0% | |
| GATTTAGGGACAAAATTGAT+GGG | - | chr8.4:65208710-65208729 | None:intergenic | 30.0% | |
| GCTAATAAAGGAATTGGTTA+TGG | + | chr8.4:65206813-65206832 | MS.gene056715:CDS | 30.0% | |
| GTAAAAAGAATAGACCAGAA+GGG | - | chr8.4:65208661-65208680 | None:intergenic | 30.0% | |
| GTAGAAAGTTTGAAAGAGTT+GGG | + | chr8.4:65206912-65206931 | MS.gene056715:CDS | 30.0% | |
| TAACAACAAGCTTGATCATA+AGG | + | chr8.4:65206737-65206756 | MS.gene056715:intron | 30.0% | |
| TCAGTTTATGCCAAATGAAT+GGG | + | chr8.4:65208322-65208341 | MS.gene056715:intron | 30.0% | |
| TGATTTAGGGACAAAATTGA+TGG | - | chr8.4:65208711-65208730 | None:intergenic | 30.0% | |
| TGGAGAGAATGTTGTTAAAA+AGG | + | chr8.4:65207165-65207184 | MS.gene056715:CDS | 30.0% | |
| TGTAAAAAGAATAGACCAGA+AGG | - | chr8.4:65208662-65208681 | None:intergenic | 30.0% | |
| TGTAGAAAGTTTGAAAGAGT+TGG | + | chr8.4:65206911-65206930 | MS.gene056715:CDS | 30.0% | |
| TTATGGGATATGCAAGAAAT+TGG | + | chr8.4:65206830-65206849 | MS.gene056715:CDS | 30.0% | |
| TTCAGTTTATGCCAAATGAA+TGG | + | chr8.4:65208321-65208340 | MS.gene056715:intron | 30.0% | |
| ! | AACAAATGTTGGCCAATTTT+TGG | - | chr8.4:65208447-65208466 | None:intergenic | 30.0% |
| ! | ACCTTGTTAATCTTGTTTCT+AGG | + | chr8.4:65206772-65206791 | MS.gene056715:intron | 30.0% |
| !! | ATTTGTTTCTGGTTACACAA+TGG | + | chr8.4:65208460-65208479 | MS.gene056715:CDS | 30.0% |
| !! | CAGCTTTAAATTCTTACACA+AGG | + | chr8.4:65208489-65208508 | MS.gene056715:CDS | 30.0% |
| !! | CATGAATCGTTCTGAAAAAT+CGG | + | chr8.4:65207588-65207607 | MS.gene056715:intron | 30.0% |
| !! | CCTATTATATGTGTTGTTTC+TGG | + | chr8.4:65208989-65209008 | MS.gene056715:intron | 30.0% |
| !! | GATTTGATTTTGTAGGTAAG+GGG | + | chr8.4:65207880-65207899 | MS.gene056715:intron | 30.0% |
| !! | TAATCTTGTTTCTAGGTATG+CGG | + | chr8.4:65206779-65206798 | MS.gene056715:intron | 30.0% |
| AATTGGCCAACATTTGTTTC+TGG | + | chr8.4:65208449-65208468 | MS.gene056715:CDS | 35.0% | |
| ACACAATTTATGCGGAAATG+AGG | - | chr8.4:65208533-65208552 | None:intergenic | 35.0% | |
| ACAGGAGCTAATAAAGGAAT+TGG | + | chr8.4:65206807-65206826 | MS.gene056715:CDS | 35.0% | |
| ACATATAATAGGCCACAAGT+AGG | - | chr8.4:65208981-65209000 | None:intergenic | 35.0% | |
| ACGTCTTCAATCTCAAGTAT+CGG | + | chr8.4:65208262-65208281 | MS.gene056715:intron | 35.0% | |
| ACTGCTAGAAATGAGAAAAG+AGG | + | chr8.4:65206879-65206898 | MS.gene056715:CDS | 35.0% | |
| AGGTACCTTGAAGAAAAAAG+AGG | - | chr8.4:65206699-65206718 | None:intergenic | 35.0% | |
| ATAACTTGAGCTCAATCACT+TGG | - | chr8.4:65207558-65207577 | None:intergenic | 35.0% | |
| ATCGTTTAATCTTGATCGGA+CGG | + | chr8.4:65207265-65207284 | MS.gene056715:intron | 35.0% | |
| CACAATTTATGCGGAAATGA+GGG | - | chr8.4:65208532-65208551 | None:intergenic | 35.0% | |
| CATATAATAGGCCACAAGTA+GGG | - | chr8.4:65208980-65208999 | None:intergenic | 35.0% | |
| CGACACGATATTTACACAAT+TGG | - | chr8.4:65208226-65208245 | None:intergenic | 35.0% | |
| CTGTTCCATATTGAAATCGT+AGG | + | chr8.4:65209112-65209131 | MS.gene056715:intron | 35.0% | |
| CTTGAAGAAAAAAGAGGCTA+AGG | - | chr8.4:65206693-65206712 | None:intergenic | 35.0% | |
| GAAAAACCACAAAGTCAGAA+AGG | - | chr8.4:65206938-65206957 | None:intergenic | 35.0% | |
| GGAAAACTTGATATCTTGGT+GGG | + | chr8.4:65207023-65207042 | MS.gene056715:intron | 35.0% | |
| GTGTAACCAGAAACAAATGT+TGG | - | chr8.4:65208458-65208477 | None:intergenic | 35.0% | |
| GTTATCAAATCCAACCAAGA+TGG | + | chr8.4:65207359-65207378 | MS.gene056715:intron | 35.0% | |
| GTTGTAACAGGAGCTAATAA+AGG | + | chr8.4:65206801-65206820 | MS.gene056715:CDS | 35.0% | |
| TAAGGGGTGAAATATCTGAT+TGG | + | chr8.4:65207896-65207915 | MS.gene056715:CDS | 35.0% | |
| TGAAGTAGATAGTTGGAGAA+GGG | - | chr8.4:65208013-65208032 | None:intergenic | 35.0% | |
| TGGAAAACTTGATATCTTGG+TGG | + | chr8.4:65207022-65207041 | MS.gene056715:intron | 35.0% | |
| ! | AGATTACAAAGAAGGAGCAT+TGG | + | chr8.4:65208418-65208437 | MS.gene056715:CDS | 35.0% |
| !! | AATCGTTCTGAAAAATCGGA+AGG | + | chr8.4:65207592-65207611 | MS.gene056715:intron | 35.0% |
| !! | GAGCATTGGAAACCAAAAAT+TGG | + | chr8.4:65208432-65208451 | MS.gene056715:CDS | 35.0% |
| !!! | CTTAGCCTCTTTTTTCTTCA+AGG | + | chr8.4:65206691-65206710 | MS.gene056715:intron | 35.0% |
| !!! | GGGTTTTTAAGCATTGATGA+AGG | + | chr8.4:65208593-65208612 | MS.gene056715:CDS | 35.0% |
| AGAGGAGACATTAACAATCC+TGG | - | chr8.4:65208037-65208056 | None:intergenic | 40.0% | |
| CAGGGCATACACAATTTATG+CGG | - | chr8.4:65208541-65208560 | None:intergenic | 40.0% | |
| CTCTAGACGTGGAAAATTCA+AGG | + | chr8.4:65208053-65208072 | MS.gene056715:CDS | 40.0% | |
| GAAGTAGATAGTTGGAGAAG+GGG | - | chr8.4:65208012-65208031 | None:intergenic | 40.0% | |
| GAGGAGACATTAACAATCCT+GGG | - | chr8.4:65208036-65208055 | None:intergenic | 40.0% | |
| GGATTAAATTGGAGAGAGAG+TGG | - | chr8.4:65208734-65208753 | None:intergenic | 40.0% | |
| GTGAAGTAGATAGTTGGAGA+AGG | - | chr8.4:65208014-65208033 | None:intergenic | 40.0% | |
| ! | AAAGATGACTTGCACCATCT+TGG | - | chr8.4:65207376-65207395 | None:intergenic | 40.0% |
| ! | CTTGAATTTTCCACGTCTAG+AGG | - | chr8.4:65208055-65208074 | None:intergenic | 40.0% |
| ! | TGCAAGAAATTGGCTTCAAG+AGG | + | chr8.4:65206840-65206859 | MS.gene056715:CDS | 40.0% |
| ! | TGTAAATATCGTGTCGGTGT+CGG | + | chr8.4:65208230-65208249 | MS.gene056715:intron | 40.0% |
| ! | TTTGGAATCATTGGTACCGT+AGG | + | chr8.4:65207108-65207127 | MS.gene056715:intron | 40.0% |
| !! | ATTGGCTTCAAGAGGTGTTA+TGG | + | chr8.4:65206848-65206867 | MS.gene056715:CDS | 40.0% |
| ACACCAGCATTGTTCACCTA+CGG | - | chr8.4:65207127-65207146 | None:intergenic | 45.0% | |
| ACTCCTCTTGCCCATTCATT+TGG | - | chr8.4:65208335-65208354 | None:intergenic | 45.0% | |
| ATGCCAAATGAATGGGCAAG+AGG | + | chr8.4:65208329-65208348 | MS.gene056715:CDS | 45.0% | |
| CATCATCTGGCAACAATGCT+AGG | - | chr8.4:65208637-65208656 | None:intergenic | 45.0% | |
| CTAGCATTGTTGCCAGATGA+TGG | + | chr8.4:65208635-65208654 | MS.gene056715:CDS | 45.0% | |
| CTTCCATGCATTCTTGTTGC+CGG | + | chr8.4:65207233-65207252 | MS.gene056715:intron | 45.0% | |
| GAGAGAGAGAGAGAGAAATG+TGG | - | chr8.4:65208090-65208109 | None:intergenic | 45.0% | |
| GGAGAGAGAGTGGTGATTTA+GGG | - | chr8.4:65208724-65208743 | None:intergenic | 45.0% | |
| GTTAATGTCTCCTCTAGACG+TGG | + | chr8.4:65208042-65208061 | MS.gene056715:CDS | 45.0% | |
| GTTGCTGGAGGAATAGTGAA+TGG | + | chr8.4:65207145-65207164 | MS.gene056715:CDS | 45.0% | |
| TCATATGACTGCCCTACTTG+TGG | + | chr8.4:65208966-65208985 | MS.gene056715:intron | 45.0% | |
| TCCAACTATCTACTTCACCC+AGG | + | chr8.4:65208016-65208035 | MS.gene056715:CDS | 45.0% | |
| TCCTGGGTGAAGTAGATAGT+TGG | - | chr8.4:65208020-65208039 | None:intergenic | 45.0% | |
| TCTAGGTATGCGGTTGTAAC+AGG | + | chr8.4:65206789-65206808 | MS.gene056715:intron | 45.0% | |
| TGGAGAGAGAGTGGTGATTT+AGG | - | chr8.4:65208725-65208744 | None:intergenic | 45.0% | |
| ! | ATGACTTGCACCATCTTGGT+TGG | - | chr8.4:65207372-65207391 | None:intergenic | 45.0% |
| !! | TTTAAATAAATTTAAAAAGT+AGG | + | chr8.4:65207324-65207343 | MS.gene056715:intron | 5.0% |
| ATGCCGGCAACAAGAATGCA+TGG | - | chr8.4:65207239-65207258 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCACGGTAT+TGG | + | chr8.4:65208135-65208154 | MS.gene056715:intron | 50.0% | |
| CTCTCTCTCTCTCTCTCTCA+CGG | + | chr8.4:65208129-65208148 | MS.gene056715:intron | 50.0% | |
| GTACCGTAGGTGAACAATGC+TGG | + | chr8.4:65207121-65207140 | MS.gene056715:intron | 50.0% | |
| GTTGGGCCTTTCTGACTTTG+TGG | + | chr8.4:65206929-65206948 | MS.gene056715:CDS | 50.0% | |
| ! | GGCAACAATGCTAGGTTGAC+AGG | - | chr8.4:65208629-65208648 | None:intergenic | 50.0% |
| !! | AACAATGCTGGTGTTGCTGG+AGG | + | chr8.4:65207133-65207152 | MS.gene056715:CDS | 50.0% |
| !! | GTGAACAATGCTGGTGTTGC+TGG | + | chr8.4:65207130-65207149 | MS.gene056715:CDS | 50.0% |
| AGACCAGAAGGGCCATCATC+TGG | - | chr8.4:65208650-65208669 | None:intergenic | 55.0% | |
| CTGACACGTTGACACACTGC+CGG | + | chr8.4:65208166-65208185 | MS.gene056715:intron | 55.0% | |
| ! | TTGCCAGATGATGGCCCTTC+TGG | + | chr8.4:65208644-65208663 | MS.gene056715:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 65206655 | 65209138 | 65206655 | ID=MS.gene056715 |
| chr8.4 | mRNA | 65206655 | 65209138 | 65206655 | ID=MS.gene056715.t1;Parent=MS.gene056715 |
| chr8.4 | exon | 65206655 | 65206674 | 65206655 | ID=MS.gene056715.t1.exon1;Parent=MS.gene056715.t1 |
| chr8.4 | CDS | 65206655 | 65206674 | 65206655 | ID=cds.MS.gene056715.t1;Parent=MS.gene056715.t1 |
| chr8.4 | exon | 65206794 | 65207040 | 65206794 | ID=MS.gene056715.t1.exon2;Parent=MS.gene056715.t1 |
| chr8.4 | CDS | 65206794 | 65207040 | 65206794 | ID=cds.MS.gene056715.t1;Parent=MS.gene056715.t1 |
| chr8.4 | exon | 65207130 | 65207186 | 65207130 | ID=MS.gene056715.t1.exon3;Parent=MS.gene056715.t1 |
| chr8.4 | CDS | 65207130 | 65207186 | 65207130 | ID=cds.MS.gene056715.t1;Parent=MS.gene056715.t1 |
| chr8.4 | exon | 65207895 | 65208074 | 65207895 | ID=MS.gene056715.t1.exon4;Parent=MS.gene056715.t1 |
| chr8.4 | CDS | 65207895 | 65208074 | 65207895 | ID=cds.MS.gene056715.t1;Parent=MS.gene056715.t1 |
| chr8.4 | exon | 65208326 | 65208665 | 65208326 | ID=MS.gene056715.t1.exon5;Parent=MS.gene056715.t1 |
| chr8.4 | CDS | 65208326 | 65208665 | 65208326 | ID=cds.MS.gene056715.t1;Parent=MS.gene056715.t1 |
| chr8.4 | exon | 65209134 | 65209138 | 65209134 | ID=MS.gene056715.t1.exon6;Parent=MS.gene056715.t1 |
| chr8.4 | CDS | 65209134 | 65209138 | 65209134 | ID=cds.MS.gene056715.t1;Parent=MS.gene056715.t1 |
| Gene Sequence |
| Protein sequence |
