Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85078.t1 | XP_013455406.1 | 97.1 | 1059 | 31 | 0 | 1 | 1059 | 1 | 1059 | 0.00E+00 | 1914 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85078.t1 | Q9FII7 | 54.7 | 1051 | 473 | 2 | 11 | 1059 | 8 | 1057 | 2.0e-309 | 1063.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85078.t1 | A0A072UIF4 | 97.1 | 1059 | 31 | 0 | 1 | 1059 | 1 | 1059 | 0.0e+00 | 1914.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85078 | MS.gene015611 | PPI |
| MS.gene95862 | MS.gene85078 | PPI |
| MS.gene85078 | MS.gene058555 | PPI |
| MS.gene85078 | MS.gene62647 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85078.t1 | MTR_4g036760 | 98.017 | 1059 | 21 | 0 | 1 | 1059 | 1 | 1059 | 0.0 | 2147 |
| MS.gene85078.t1 | MTR_4g061050 | 80.359 | 1059 | 207 | 1 | 1 | 1059 | 1 | 1058 | 0.0 | 1724 |
| MS.gene85078.t1 | MTR_1g018410 | 67.647 | 68 | 16 | 2 | 160 | 225 | 8 | 71 | 7.59e-19 | 82.4 |
| MS.gene85078.t1 | MTR_4g115050 | 22.562 | 523 | 332 | 17 | 22 | 518 | 10 | 485 | 2.99e-12 | 71.6 |
| MS.gene85078.t1 | MTR_5g036370 | 24.221 | 417 | 245 | 15 | 22 | 425 | 22 | 380 | 7.32e-12 | 70.5 |
| MS.gene85078.t1 | MTR_3g033470 | 23.282 | 524 | 325 | 18 | 23 | 518 | 22 | 496 | 1.94e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85078.t1 | AT5G07660 | 56.058 | 1040 | 454 | 2 | 22 | 1059 | 20 | 1058 | 0.0 | 1151 |
| MS.gene85078.t1 | AT5G61460 | 56.209 | 1055 | 454 | 3 | 12 | 1059 | 4 | 1057 | 0.0 | 1144 |
| MS.gene85078.t1 | AT5G15920 | 21.657 | 531 | 343 | 18 | 14 | 518 | 12 | 495 | 7.35e-12 | 70.5 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATCGTTGCTTCTTATT+TGG | 0.126513 | 4.2:+67018682 | None:intergenic |
| CGAGACACGCGAGGTCTTTC+AGG | 0.151748 | 4.2:-67011072 | MS.gene85078:intron |
| GGATGAATTCGATGTCTTTA+TGG | 0.159745 | 4.2:-67009617 | MS.gene85078:intron |
| GGGAATCATCTTCTTCTTCT+AGG | 0.168454 | 4.2:-67031453 | MS.gene85078:CDS |
| AGTTGCTTAATGGTAATAAA+TGG | 0.218798 | 4.2:-67022245 | MS.gene85078:CDS |
| TTTCCTGAAGATCTGCTTTC+CGG | 0.220234 | 4.2:+67027714 | None:intergenic |
| TTCATTCTGACAGCAAATTA+TGG | 0.237863 | 4.2:+67013197 | None:intergenic |
| TCAGCAAGTCAATGATCTTC+TGG | 0.239388 | 4.2:-67027114 | MS.gene85078:CDS |
| AATTCATCCATTGCTCTAAA+TGG | 0.247481 | 4.2:+67009631 | None:intergenic |
| ATTGATGGATGGTTTGTATT+AGG | 0.264261 | 4.2:+67021931 | None:intergenic |
| TATGATTTAGACTTTCTAAT+TGG | 0.286407 | 4.2:+67013124 | None:intergenic |
| ACTGCATTGTGTGTGGCTTT+TGG | 0.288433 | 4.2:-67030117 | MS.gene85078:CDS |
| GCAAAAGCAGATGATCTTAA+AGG | 0.288494 | 4.2:-67014702 | MS.gene85078:CDS |
| AAGTCGTAGATGAGTATAAA+TGG | 0.303064 | 4.2:-67018594 | MS.gene85078:CDS |
| GTTTGACAGAAGTTGCTTAA+TGG | 0.303618 | 4.2:-67022255 | MS.gene85078:intron |
| CGAAGACCTCCTTCAAATTT+CGG | 0.309986 | 4.2:+67021002 | None:intergenic |
| TGGAAGCAGACCACAGCTTT+TGG | 0.314236 | 4.2:-67022922 | MS.gene85078:intron |
| GGTAATGGAGCTTGCGGATT+CGG | 0.321397 | 4.2:+67029607 | None:intergenic |
| AAATAACAAAGATAAATTTA+AGG | 0.322875 | 4.2:-67027228 | MS.gene85078:intron |
| CAGGGTCCTACATGATATTA+AGG | 0.331502 | 4.2:-67014342 | MS.gene85078:CDS |
| AATCTCATCACTGGTCAAAA+TGG | 0.331708 | 4.2:-67031334 | MS.gene85078:CDS |
| AATTGGCCGCTGATTTGCTC+TGG | 0.331929 | 4.2:+67013141 | None:intergenic |
| TTCCTGAAGATCTGCTTTCC+GGG | 0.332608 | 4.2:+67027715 | None:intergenic |
| AGCCCTGTTTGATGCATCTT+GGG | 0.348212 | 4.2:+67011098 | None:intergenic |
| TTCAAAGGCAACAACCTTCC+CGG | 0.349359 | 4.2:+67021033 | None:intergenic |
| AAGAACGAAAGATTATTAAA+AGG | 0.350056 | 4.2:-67012879 | MS.gene85078:CDS |
| ATCTCAAGCGTCAACTTTGT+TGG | 0.350601 | 4.2:-67011507 | MS.gene85078:CDS |
| GAAAGCTGAGAGTGAACTTA+TGG | 0.364480 | 4.2:-67014520 | MS.gene85078:CDS |
| TACTTCTAAGAAGCTAGCTT+TGG | 0.372920 | 4.2:-67015555 | MS.gene85078:CDS |
| CAGCCCTGTTTGATGCATCT+TGG | 0.378810 | 4.2:+67011097 | None:intergenic |
| GCTTTCAAGCCTGATATATA+TGG | 0.392651 | 4.2:-67029659 | MS.gene85078:CDS |
| CCCGAACTCAGTTTCATGAT+TGG | 0.393545 | 4.2:+67031366 | None:intergenic |
| TAAGAAGATGAATTCTATAA+AGG | 0.394677 | 4.2:-67018533 | MS.gene85078:intron |
| GAAGGCTTGCCAGAGGGCTT+TGG | 0.395157 | 4.2:-67011566 | MS.gene85078:intron |
| CCAAATAAGAAGCAACGATA+TGG | 0.395539 | 4.2:-67018682 | MS.gene85078:CDS |
| GTATTAGGAAGCATGTCTTC+TGG | 0.396628 | 4.2:+67021946 | None:intergenic |
| CACCCGGAAAGCAGATCTTC+AGG | 0.397151 | 4.2:-67027717 | MS.gene85078:CDS |
| GCTTGGTGAAGGCAGGGAAC+AGG | 0.398821 | 4.2:-67009002 | MS.gene85078:CDS |
| TGGTCCAATTGGTGCCCATC+TGG | 0.400458 | 4.2:-67022830 | MS.gene85078:intron |
| CGAACCTTGGTGATCTTTCA+AGG | 0.404536 | 4.2:+67029586 | None:intergenic |
| TTGAAGGATTTCATTAAAAC+CGG | 0.406277 | 4.2:-67030060 | MS.gene85078:CDS |
| ATTGGCCGCTGATTTGCTCT+GGG | 0.407159 | 4.2:+67013142 | None:intergenic |
| TGCCCCAAGATGCATCAAAC+AGG | 0.408283 | 4.2:-67011101 | MS.gene85078:CDS |
| GGAGGCAGAGGAGCACTGTC+TGG | 0.409604 | 4.2:-67014321 | MS.gene85078:CDS |
| ATAACATCACCATATATATC+AGG | 0.411189 | 4.2:+67029650 | None:intergenic |
| TTGGTGATCTTTCAAGGTAA+TGG | 0.411963 | 4.2:+67029592 | None:intergenic |
| TCAAAGAGCATCTACTTTGA+AGG | 0.417335 | 4.2:-67030076 | MS.gene85078:CDS |
| AAGCCTCCCATTGGTCCAAT+TGG | 0.417367 | 4.2:-67022841 | MS.gene85078:CDS |
| GGAATCATCTTCTTCTTCTA+GGG | 0.420390 | 4.2:-67031452 | MS.gene85078:CDS |
| CGTTGAACAAATTTCCATAC+AGG | 0.420583 | 4.2:-67026973 | MS.gene85078:CDS |
| ACGTGCAGTAGTTGTTTCAA+TGG | 0.421660 | 4.2:+67027082 | None:intergenic |
| TCCAATCATGAAACTGAGTT+CGG | 0.423761 | 4.2:-67031367 | MS.gene85078:CDS |
| TGATCATGCTAAGTCCGAAT+TGG | 0.424449 | 4.2:-67024146 | MS.gene85078:CDS |
| AAAAGAAACTTGCATGGTCA+TGG | 0.425831 | 4.2:-67026938 | MS.gene85078:CDS |
| CTTCGTTAGGAGGTTGTGAT+GGG | 0.432626 | 4.2:-67013170 | MS.gene85078:CDS |
| TGATCACCCCGCATGATACT+AGG | 0.435502 | 4.2:-67009430 | MS.gene85078:intron |
| TATTTGGAGGAAGAGTTGTC+TGG | 0.438542 | 4.2:+67018698 | None:intergenic |
| AATCACAGGTGATCAAGAAC+GGG | 0.441397 | 4.2:+67008954 | None:intergenic |
| CAAAAGCAGATGATCTTAAA+GGG | 0.444375 | 4.2:-67014701 | MS.gene85078:CDS |
| CAGAATGAACTTGCTTCGTT+AGG | 0.445536 | 4.2:-67013183 | MS.gene85078:CDS |
| GCTTCGTTAGGAGGTTGTGA+TGG | 0.447998 | 4.2:-67013171 | MS.gene85078:CDS |
| AAATCAAAACCTATCCAATT+CGG | 0.451467 | 4.2:+67024132 | None:intergenic |
| TTCTAGATTGAAAGAAGAAG+AGG | 0.454972 | 4.2:-67024031 | MS.gene85078:intron |
| TGTAAGACGGAAAGAATTGA+TGG | 0.456250 | 4.2:+67021916 | None:intergenic |
| CCAATCATGAAACTGAGTTC+GGG | 0.456356 | 4.2:-67031366 | MS.gene85078:CDS |
| AGCTAAGATTGATAAACAAC+TGG | 0.459010 | 4.2:-67026838 | MS.gene85078:intron |
| GTTGCTTAATGGTAATAAAT+GGG | 0.459559 | 4.2:-67022244 | MS.gene85078:CDS |
| ATTACCAGATGGGCACCAAT+TGG | 0.462087 | 4.2:+67022826 | None:intergenic |
| CTTGTGATCAGTCACTATAA+AGG | 0.466397 | 4.2:+67022182 | None:intergenic |
| ATGATTCCCGCTTCGAGACT+CGG | 0.473613 | 4.2:+67031424 | None:intergenic |
| TTCGAAACTCCAAAGCCCTC+TGG | 0.473982 | 4.2:+67011557 | None:intergenic |
| TATCGTTGCTTCTTATTTGG+AGG | 0.474228 | 4.2:+67018685 | None:intergenic |
| CTTGTTAACGACTATAATAC+CGG | 0.476476 | 4.2:-67021052 | MS.gene85078:CDS |
| TACATTCAGTTTCTGTCGAA+GGG | 0.478793 | 4.2:+67012840 | None:intergenic |
| AATGAACTTGCTTCGTTAGG+AGG | 0.480699 | 4.2:-67013180 | MS.gene85078:CDS |
| ATTTCGGATCCTTTGTTCAA+AGG | 0.481427 | 4.2:+67021018 | None:intergenic |
| AGATGGCACAACAGTTGAAA+AGG | 0.482076 | 4.2:-67024455 | MS.gene85078:CDS |
| ACAAAGGATCCGAAATTTGA+AGG | 0.483560 | 4.2:-67021011 | MS.gene85078:CDS |
| AAAATTTACCTCAATCGATA+AGG | 0.484478 | 4.2:+67011308 | None:intergenic |
| TGGGCACCAATTGGACCAAT+GGG | 0.486609 | 4.2:+67022835 | None:intergenic |
| TAGAGACTTTGTGTAACTGC+TGG | 0.491101 | 4.2:-67015587 | MS.gene85078:CDS |
| CTTCATGCCTCCTCTGCTCA+AGG | 0.492997 | 4.2:+67014730 | None:intergenic |
| CGTCTAAGTAGTTCTGTTGA+AGG | 0.493088 | 4.2:-67018658 | MS.gene85078:CDS |
| GTTCAATGTCTTAGTCGATC+TGG | 0.493459 | 4.2:-67021875 | MS.gene85078:intron |
| TTTAAGTCGCTCTATGTCCT+TGG | 0.495627 | 4.2:-67025749 | MS.gene85078:intron |
| TTTATCAATCTTAGCTTGGC+AGG | 0.496904 | 4.2:+67026845 | None:intergenic |
| GTTGCTGTTGAACATGCCAT+TGG | 0.496940 | 4.2:-67022219 | MS.gene85078:CDS |
| ACTGTCTGGAGCTTACAAAA+AGG | 0.500073 | 4.2:-67014307 | MS.gene85078:CDS |
| CATGTTGAAATTCAAAATGA+AGG | 0.503039 | 4.2:-67029689 | MS.gene85078:CDS |
| GTTGTTTATCAATCTTAGCT+TGG | 0.509132 | 4.2:+67026841 | None:intergenic |
| GTTCACTCTCAGCTTTCTCA+AGG | 0.510647 | 4.2:+67014526 | None:intergenic |
| CAGATACTCTGAATCTATTG+AGG | 0.510872 | 4.2:-67012926 | MS.gene85078:CDS |
| TCGTTAAGCTCCTTCTCTAT+AGG | 0.511385 | 4.2:+67027026 | None:intergenic |
| GCGGGGTGATCAATATCCAC+TGG | 0.511870 | 4.2:+67009441 | None:intergenic |
| AAAGAAACTTGCATGGTCAT+GGG | 0.520535 | 4.2:-67026937 | MS.gene85078:CDS |
| TCGCACATTGTTTCAAAAGA+CGG | 0.525566 | 4.2:+67022154 | None:intergenic |
| AATTAGTGACATACAGAAGA+TGG | 0.525628 | 4.2:-67024472 | MS.gene85078:CDS |
| CTTTATAGTGACTGATCACA+AGG | 0.528146 | 4.2:-67022181 | MS.gene85078:CDS |
| TTGCTGTTGAACATGCCATT+GGG | 0.528218 | 4.2:-67022218 | MS.gene85078:CDS |
| AAATTGAAAAGCTGAAGAAT+CGG | 0.528467 | 4.2:-67026875 | MS.gene85078:CDS |
| GGAGGAAGAGTTGTCTGGAC+CGG | 0.533903 | 4.2:+67018703 | None:intergenic |
| TTTGTTTCCTCCAAAAGCTG+TGG | 0.534002 | 4.2:+67022912 | None:intergenic |
| AATTAAACAGTTCTTCTACA+AGG | 0.535209 | 4.2:-67027147 | MS.gene85078:intron |
| AAGGAGGTCTTCGCTGTGGA+TGG | 0.536962 | 4.2:-67020992 | MS.gene85078:CDS |
| TTGCATGTGCAGCTTGGTGA+AGG | 0.537366 | 4.2:-67009013 | MS.gene85078:intron |
| ATCACAAGTCAAGCAAATGA+AGG | 0.539154 | 4.2:-67025776 | MS.gene85078:CDS |
| ATGGGCACCAATTGGACCAA+TGG | 0.539785 | 4.2:+67022834 | None:intergenic |
| ATGTGCAGCTTGGTGAAGGC+AGG | 0.540551 | 4.2:-67009009 | MS.gene85078:intron |
| TGTAATACCTAGTATCATGC+GGG | 0.543861 | 4.2:+67009423 | None:intergenic |
| ATGCTAAGTCCGAATTGGAT+AGG | 0.544206 | 4.2:-67024141 | MS.gene85078:intron |
| ATTTCATTAAAACCGGTGCT+AGG | 0.545899 | 4.2:-67030053 | MS.gene85078:intron |
| AAGGCTTGAAGTACGAATGC+AGG | 0.545965 | 4.2:-67024436 | MS.gene85078:CDS |
| TTCAATAAGACCTATAGAGA+AGG | 0.546249 | 4.2:-67027036 | MS.gene85078:CDS |
| ATACATTCAGTTTCTGTCGA+AGG | 0.549046 | 4.2:+67012839 | None:intergenic |
| AGAGGGCTTTGGAGTTTCGA+AGG | 0.549906 | 4.2:-67011555 | MS.gene85078:CDS |
| AGAGTCTCCATTTAGAGCAA+TGG | 0.551198 | 4.2:-67009638 | MS.gene85078:CDS |
| TAGAAGACCTTGAGCAGAGG+AGG | 0.552531 | 4.2:-67014737 | MS.gene85078:CDS |
| GAGACTCTGTCATTTCATGA+AGG | 0.554710 | 4.2:+67009653 | None:intergenic |
| TATACTTCTTGTCATGATCT+CGG | 0.555494 | 4.2:+67023112 | None:intergenic |
| AAATCACAGGTGATCAAGAA+CGG | 0.556108 | 4.2:+67008953 | None:intergenic |
| CACTTAGGCGTGAGAGCCGA+AGG | 0.556583 | 4.2:-67013101 | MS.gene85078:intron |
| AGGTTGTTGCCTTTGAACAA+AGG | 0.562112 | 4.2:-67021027 | MS.gene85078:CDS |
| CTTAATATCATGTAGGACCC+TGG | 0.565032 | 4.2:+67014343 | None:intergenic |
| TCAATCTTAGCTTGGCAGGT+AGG | 0.567601 | 4.2:+67026849 | None:intergenic |
| GCAGAGGAGGCATGAAGCAG+TGG | 0.569889 | 4.2:-67014724 | MS.gene85078:CDS |
| TCTTGACTCATAATCACGCA+TGG | 0.570641 | 4.2:+67027278 | None:intergenic |
| ACTGAAGGGGCTTCGAGATG+AGG | 0.571274 | 4.2:-67024170 | MS.gene85078:CDS |
| ACATGATATTAAGGAGGCAG+AGG | 0.571752 | 4.2:-67014333 | MS.gene85078:CDS |
| AGAGGCAGATCTCAAGCTTG+AGG | 0.572006 | 4.2:-67018563 | MS.gene85078:CDS |
| AAAGTCTAAATCATACACTT+AGG | 0.572201 | 4.2:-67013116 | MS.gene85078:CDS |
| CTTGGTGAAGGCAGGGAACA+GGG | 0.574391 | 4.2:-67009001 | MS.gene85078:CDS |
| TTTCAAGGTAATGGAGCTTG+CGG | 0.574874 | 4.2:+67029601 | None:intergenic |
| TTCACTCTCAGCTTTCTCAA+GGG | 0.574997 | 4.2:+67014527 | None:intergenic |
| ATGATAATGTCATGAAAACC+AGG | 0.575198 | 4.2:-67014361 | MS.gene85078:CDS |
| CAGGGTAAAGAAGATGCAAA+TGG | 0.576301 | 4.2:-67008983 | MS.gene85078:CDS |
| GCAGATGACCTTATCGATTG+AGG | 0.578588 | 4.2:-67011316 | MS.gene85078:intron |
| CAGGAAAGAAAGTTTGCACC+CGG | 0.579247 | 4.2:-67027733 | MS.gene85078:CDS |
| GTTTCGCCGAGTCTCGAAGC+GGG | 0.581393 | 4.2:-67031430 | MS.gene85078:CDS |
| CTGCCTCCTTAATATCATGT+AGG | 0.582341 | 4.2:+67014336 | None:intergenic |
| GGAATTGAGCATTCTCCCAA+TGG | 0.582916 | 4.2:+67022203 | None:intergenic |
| CACAAACTATATTACCAGAT+GGG | 0.585651 | 4.2:+67022816 | None:intergenic |
| ACTCAGTTTCATGATTGGAA+TGG | 0.585770 | 4.2:+67031371 | None:intergenic |
| AATACTTACTGCATTGTGTG+TGG | 0.586273 | 4.2:-67030124 | MS.gene85078:CDS |
| AGTCACGTTAATCTCATCAC+TGG | 0.586442 | 4.2:-67031343 | MS.gene85078:CDS |
| AGACGGAAAGAATTGATGGA+TGG | 0.589022 | 4.2:+67021920 | None:intergenic |
| CGGGGTGATCAATATCCACT+GGG | 0.589200 | 4.2:+67009442 | None:intergenic |
| AGGTTTAAGAAGCCTCCCAT+TGG | 0.592949 | 4.2:-67022850 | MS.gene85078:CDS |
| GGGAAATTTGACGAATTGTG+TGG | 0.593007 | 4.2:-67014681 | MS.gene85078:intron |
| GTATAAATGGAATAAGAGAG+AGG | 0.595109 | 4.2:-67018581 | MS.gene85078:CDS |
| CTGAATCTATTGAGGATCTG+AGG | 0.595165 | 4.2:-67012918 | MS.gene85078:CDS |
| GCCCTGTTTGATGCATCTTG+GGG | 0.595878 | 4.2:+67011099 | None:intergenic |
| TGAAATTCAAAATGAAGGAG+AGG | 0.598068 | 4.2:-67029684 | MS.gene85078:CDS |
| TTTATTGAAGGCTTGCCAGA+GGG | 0.599754 | 4.2:-67011572 | MS.gene85078:intron |
| AATCAAAAGGATTGATGATG+AGG | 0.600262 | 4.2:-67023971 | MS.gene85078:intron |
| GCAGAATAAAATTAAAACGA+TGG | 0.604147 | 4.2:-67027000 | MS.gene85078:CDS |
| ATATGGCATTTACCTAGCAC+CGG | 0.604173 | 4.2:+67030041 | None:intergenic |
| ATATTGAGAGATGTCATCAA+AGG | 0.607533 | 4.2:-67022870 | MS.gene85078:CDS |
| GTGATTATCGCATTGTAAGA+CGG | 0.609075 | 4.2:+67021903 | None:intergenic |
| AGACTCTGTCATTTCATGAA+GGG | 0.615851 | 4.2:+67009654 | None:intergenic |
| ACTGCAGGTGAATCTTGAGA+AGG | 0.616302 | 4.2:-67013223 | MS.gene85078:intron |
| GTTTATTGAAGGCTTGCCAG+AGG | 0.620811 | 4.2:-67011573 | MS.gene85078:intron |
| TGACGTGGACAAGAAACTTG+AGG | 0.624480 | 4.2:-67026910 | MS.gene85078:CDS |
| TGAAGCGTGCTAGAAGCACA+TGG | 0.626036 | 4.2:-67031474 | MS.gene85078:CDS |
| TTTGTTAATTAGGTGGAGAG+CGG | 0.626794 | 4.2:-67009705 | MS.gene85078:intron |
| TTGGCCGCTGATTTGCTCTG+GGG | 0.632156 | 4.2:+67013143 | None:intergenic |
| GCCCCAAGATGCATCAAACA+GGG | 0.632464 | 4.2:-67011100 | MS.gene85078:CDS |
| TTCAACAATCTCATCAACTG+AGG | 0.632884 | 4.2:+67015484 | None:intergenic |
| GCAGGCTGAAGAATCTGACA+TGG | 0.634034 | 4.2:-67024200 | MS.gene85078:intron |
| TTCGTTAGGAGGTTGTGATG+GGG | 0.637500 | 4.2:-67013169 | MS.gene85078:CDS |
| TGTGCGAAGGAAGCAAACTA+CGG | 0.638310 | 4.2:-67022138 | MS.gene85078:CDS |
| GTGTAATACCTAGTATCATG+CGG | 0.643316 | 4.2:+67009422 | None:intergenic |
| ATTGACTTGCTGAAGAAGTG+TGG | 0.645872 | 4.2:+67027124 | None:intergenic |
| AAGGGCTAATGCAAAGCACA+AGG | 0.650919 | 4.2:+67009672 | None:intergenic |
| TTTGAAGGAGGTCTTCGCTG+TGG | 0.651154 | 4.2:-67020996 | MS.gene85078:CDS |
| GCTTAATGGTAATAAATGGG+CGG | 0.653794 | 4.2:-67022241 | MS.gene85078:CDS |
| TGTTAGAAGACCTTGAGCAG+AGG | 0.654613 | 4.2:-67014740 | MS.gene85078:CDS |
| GCACCAATTGGACCAATGGG+AGG | 0.661539 | 4.2:+67022838 | None:intergenic |
| ATCTCATCAACTGAGGACAA+AGG | 0.661907 | 4.2:+67015491 | None:intergenic |
| GCAACCCCAGAGCAAATCAG+CGG | 0.664298 | 4.2:-67013147 | MS.gene85078:CDS |
| TCAACAACAGCAAAGCAACA+AGG | 0.665018 | 4.2:-67023061 | MS.gene85078:intron |
| ATGTTATCATTGTAGAACGT+AGG | 0.666781 | 4.2:-67029634 | MS.gene85078:CDS |
| ATTGAAACAACTACTGCACG+TGG | 0.668807 | 4.2:-67027080 | MS.gene85078:CDS |
| TGTGCAGCTTGGTGAAGGCA+GGG | 0.670551 | 4.2:-67009008 | MS.gene85078:intron |
| GGCTGAAGAATCTGACATGG+AGG | 0.674024 | 4.2:-67024197 | MS.gene85078:CDS |
| TAACGACTATAATACCGGGA+AGG | 0.678686 | 4.2:-67021047 | MS.gene85078:CDS |
| TTGTTAACGACTATAATACC+GGG | 0.685701 | 4.2:-67021051 | MS.gene85078:CDS |
| AAGGATCCGAAATTTGAAGG+AGG | 0.689328 | 4.2:-67021008 | MS.gene85078:CDS |
| GGTCCTACATGATATTAAGG+AGG | 0.691180 | 4.2:-67014339 | MS.gene85078:CDS |
| AGGGCTGTTCGAGACACGCG+AGG | 0.693040 | 4.2:-67011081 | MS.gene85078:CDS |
| TGATAATGTCATGAAAACCA+GGG | 0.697105 | 4.2:-67014360 | MS.gene85078:CDS |
| GGTTTCGCCGAGTCTCGAAG+CGG | 0.701358 | 4.2:-67031431 | MS.gene85078:CDS |
| CTGAGGCACAAGGATCCCAG+TGG | 0.705015 | 4.2:-67009457 | MS.gene85078:CDS |
| GAAGCGTGCTAGAAGCACAT+GGG | 0.710966 | 4.2:-67031473 | MS.gene85078:CDS |
| GTAATACCTAGTATCATGCG+GGG | 0.719878 | 4.2:+67009424 | None:intergenic |
| ATGGTCATGGGTTTATGACG+TGG | 0.730606 | 4.2:-67026925 | MS.gene85078:CDS |
| ATTACCTTGAAAGATCACCA+AGG | 0.730985 | 4.2:-67029590 | MS.gene85078:intron |
| ATCACAGGTGATCAAGAACG+GGG | 0.733694 | 4.2:+67008955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 67008966 | 67031497 | 67008966 | ID=MS.gene85078 |
| chr4.2 | mRNA | 67008966 | 67031497 | 67008966 | ID=MS.gene85078.t1;Parent=MS.gene85078 |
| chr4.2 | exon | 67031332 | 67031497 | 67031332 | ID=MS.gene85078.t1.exon1;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67031332 | 67031497 | 67031332 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67030054 | 67030159 | 67030054 | ID=MS.gene85078.t1.exon2;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67030054 | 67030159 | 67030054 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67029591 | 67029724 | 67029591 | ID=MS.gene85078.t1.exon3;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67029591 | 67029724 | 67029591 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67027697 | 67027752 | 67027697 | ID=MS.gene85078.t1.exon4;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67027697 | 67027752 | 67027697 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67027229 | 67027315 | 67027229 | ID=MS.gene85078.t1.exon5;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67027229 | 67027315 | 67027229 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67026839 | 67027159 | 67026839 | ID=MS.gene85078.t1.exon6;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67026839 | 67027159 | 67026839 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67025750 | 67025863 | 67025750 | ID=MS.gene85078.t1.exon7;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67025750 | 67025863 | 67025750 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67024404 | 67024538 | 67024404 | ID=MS.gene85078.t1.exon8;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67024404 | 67024538 | 67024404 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67024142 | 67024218 | 67024142 | ID=MS.gene85078.t1.exon9;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67024142 | 67024218 | 67024142 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67023972 | 67024047 | 67023972 | ID=MS.gene85078.t1.exon10;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67023972 | 67024047 | 67023972 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67023062 | 67023136 | 67023062 | ID=MS.gene85078.t1.exon11;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67023062 | 67023136 | 67023062 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67022831 | 67022935 | 67022831 | ID=MS.gene85078.t1.exon12;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67022831 | 67022935 | 67022831 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67022099 | 67022268 | 67022099 | ID=MS.gene85078.t1.exon13;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67022099 | 67022268 | 67022099 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67021876 | 67021978 | 67021876 | ID=MS.gene85078.t1.exon14;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67021876 | 67021978 | 67021876 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67020983 | 67021095 | 67020983 | ID=MS.gene85078.t1.exon15;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67020983 | 67021095 | 67020983 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67018534 | 67018738 | 67018534 | ID=MS.gene85078.t1.exon16;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67018534 | 67018738 | 67018534 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67015475 | 67015606 | 67015475 | ID=MS.gene85078.t1.exon17;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67015475 | 67015606 | 67015475 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67014682 | 67014796 | 67014682 | ID=MS.gene85078.t1.exon18;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67014682 | 67014796 | 67014682 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67014488 | 67014573 | 67014488 | ID=MS.gene85078.t1.exon19;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67014488 | 67014573 | 67014488 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67014301 | 67014396 | 67014301 | ID=MS.gene85078.t1.exon20;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67014301 | 67014396 | 67014301 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67013102 | 67013238 | 67013102 | ID=MS.gene85078.t1.exon21;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67013102 | 67013238 | 67013102 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67012843 | 67012945 | 67012843 | ID=MS.gene85078.t1.exon22;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67012843 | 67012945 | 67012843 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67011505 | 67011584 | 67011505 | ID=MS.gene85078.t1.exon23;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67011505 | 67011584 | 67011505 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67011317 | 67011395 | 67011317 | ID=MS.gene85078.t1.exon24;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67011317 | 67011395 | 67011317 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67011073 | 67011130 | 67011073 | ID=MS.gene85078.t1.exon25;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67011073 | 67011130 | 67011073 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67009618 | 67009715 | 67009618 | ID=MS.gene85078.t1.exon26;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67009618 | 67009715 | 67009618 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67009431 | 67009525 | 67009431 | ID=MS.gene85078.t1.exon27;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67009431 | 67009525 | 67009431 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| chr4.2 | exon | 67008966 | 67009023 | 67008966 | ID=MS.gene85078.t1.exon28;Parent=MS.gene85078.t1 |
| chr4.2 | CDS | 67008966 | 67009023 | 67008966 | ID=cds.MS.gene85078.t1;Parent=MS.gene85078.t1 |
| Gene Sequence |
| Protein sequence |
