Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85301.t1 | XP_024631911.1 | 82 | 355 | 42 | 4 | 1 | 334 | 230 | 583 | 3.20E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85301.t1 | A0A3Q7XGP6 | 57.3 | 255 | 77 | 8 | 50 | 282 | 2 | 246 | 2.5e-65 | 258.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052519 | MS.gene85301 | 0.807457 | 5.01E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene85301 | 0.809479 | 1.85E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene85301 | 0.810376 | 1.19E-50 | -1.69E-46 |
| MS.gene053512 | MS.gene85301 | 0.805737 | 1.16E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene85301 | 0.815006 | 1.15E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85301.t1 | MTR_0125s0060 | 89.344 | 122 | 13 | 0 | 213 | 334 | 9 | 130 | 1.28e-70 | 216 |
| MS.gene85301.t1 | MTR_2g035110 | 79.528 | 127 | 26 | 0 | 213 | 339 | 9 | 135 | 3.18e-62 | 195 |
| MS.gene85301.t1 | MTR_8g066845 | 60.377 | 106 | 22 | 3 | 235 | 339 | 1 | 87 | 2.14e-26 | 100 |
| MS.gene85301.t1 | MTR_4g012560 | 79.630 | 54 | 6 | 1 | 252 | 305 | 24 | 72 | 1.69e-16 | 73.9 |
| MS.gene85301.t1 | MTR_4g029740 | 39.506 | 81 | 48 | 1 | 98 | 178 | 124 | 203 | 7.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTTCAAGGAAAATTT+TGG | 0.165653 | 2.4:+45373168 | MS.gene85301:CDS |
| TGAAACAGTTGGAGGTTAAA+TGG | 0.204653 | 2.4:+45373824 | MS.gene85301:CDS |
| CACCCATCTGGTTTCCCTTT+TGG | 0.239901 | 2.4:-45374095 | None:intergenic |
| AATTGACAATGATATTTATA+TGG | 0.247121 | 2.4:+45374298 | MS.gene85301:CDS |
| AACAAGAAGGGGCGCATATT+TGG | 0.259894 | 2.4:+45374338 | MS.gene85301:CDS |
| ATAGATCAGATGGACGAATT+TGG | 0.296416 | 2.4:+45373000 | MS.gene85301:CDS |
| TCTATGCACTCTAGCAGATA+TGG | 0.296666 | 2.4:-45373932 | None:intergenic |
| TGAATTGAAGTGTTCATATT+AGG | 0.299166 | 2.4:-45374563 | None:intergenic |
| GCACTCCTCACTACCTCTTT+TGG | 0.305095 | 2.4:-45373138 | None:intergenic |
| TCATTGTCAATTTCTTCAAT+AGG | 0.337923 | 2.4:-45374287 | None:intergenic |
| CCATTATCACCTTCTCCTTC+CGG | 0.338322 | 2.4:-45374587 | None:intergenic |
| ATATTTATATGGAAATTGTT+GGG | 0.361325 | 2.4:+45374309 | MS.gene85301:CDS |
| TAGGATGATATATCTATATC+TGG | 0.362151 | 2.4:-45372945 | None:intergenic |
| CTATGACTAATAAACAAAAT+AGG | 0.370881 | 2.4:+45373872 | MS.gene85301:CDS |
| AAGGGGCGCATATTTGGATT+AGG | 0.373630 | 2.4:+45374344 | MS.gene85301:CDS |
| GACCACTACGCACCTTGAAC+AGG | 0.382747 | 2.4:-45373768 | None:intergenic |
| ACACACCAAATAACATCAAA+TGG | 0.383913 | 2.4:+45372967 | MS.gene85301:CDS |
| GTTTCTCAAACGTTTGAGTT+TGG | 0.397323 | 2.4:-45374234 | None:intergenic |
| GATATTTATATGGAAATTGT+TGG | 0.403426 | 2.4:+45374308 | MS.gene85301:CDS |
| CACACCAAATAACATCAAAT+GGG | 0.403815 | 2.4:+45372968 | MS.gene85301:CDS |
| TTATACCGATGTAGATTCTT+CGG | 0.406193 | 2.4:+45374415 | MS.gene85301:CDS |
| GAGCGCTTGGAGCAAATGAT+TGG | 0.408396 | 2.4:+45374530 | MS.gene85301:CDS |
| GAAACAGTTGGAGGTTAAAT+GGG | 0.415071 | 2.4:+45373825 | MS.gene85301:CDS |
| ATAAGGATGTACCGTTGCTT+TGG | 0.415338 | 2.4:+45373226 | MS.gene85301:CDS |
| CCGGAAGGAGAAGGTGATAA+TGG | 0.416904 | 2.4:+45374587 | MS.gene85301:CDS |
| GTGCGTAGTGGTCATGATAA+AGG | 0.417897 | 2.4:+45373778 | MS.gene85301:CDS |
| GACAAACTTCATATACCAAA+AGG | 0.436212 | 2.4:+45374080 | MS.gene85301:CDS |
| TATCTGGATTTGCTTGTGAA+TGG | 0.449039 | 2.4:-45372929 | None:intergenic |
| CAAAATAGGCAGTCTAAAGT+TGG | 0.454140 | 2.4:+45373886 | MS.gene85301:CDS |
| GTTTCATTAAACCACCCATC+TGG | 0.467331 | 2.4:-45374107 | None:intergenic |
| TTAGAGAGTGGAATTGGATA+GGG | 0.471643 | 2.4:+45374034 | MS.gene85301:intron |
| TTTAGAGAGTGGAATTGGAT+AGG | 0.476342 | 2.4:+45374033 | MS.gene85301:intron |
| TTTGATGTTATTTGGTGTGT+AGG | 0.478152 | 2.4:-45372964 | None:intergenic |
| GAAAGATGCAAAAGAAGATA+AGG | 0.498753 | 2.4:+45373209 | MS.gene85301:CDS |
| AGAAACGCTAAAACTGAAGA+TGG | 0.499466 | 2.4:+45374508 | MS.gene85301:CDS |
| AAAACTGAAGATGGAGCGCT+TGG | 0.500382 | 2.4:+45374517 | MS.gene85301:CDS |
| TTAAATGGGAAGAAGAGAAA+TGG | 0.501205 | 2.4:+45373839 | MS.gene85301:CDS |
| GGATATGCCACAAGATCCTT+CGG | 0.501411 | 2.4:+45372899 | MS.gene85301:CDS |
| ACAAACTTCATATACCAAAA+GGG | 0.522555 | 2.4:+45374081 | MS.gene85301:CDS |
| TCTACATCGGTATAAATTGA+AGG | 0.523085 | 2.4:-45374407 | None:intergenic |
| TATTTATATGGAAATTGTTG+GGG | 0.525609 | 2.4:+45374310 | MS.gene85301:CDS |
| AGCGCTTGGAGCAAATGATT+GGG | 0.526657 | 2.4:+45374531 | MS.gene85301:CDS |
| TTGGTGGGGCGTGGTCATGC+TGG | 0.531975 | 2.4:+45373187 | MS.gene85301:CDS |
| TATGAACACTTCAATTCAGC+CGG | 0.533653 | 2.4:+45374568 | MS.gene85301:CDS |
| GTGGTCATGATAAAGGTGAA+TGG | 0.542038 | 2.4:+45373785 | MS.gene85301:CDS |
| ATTTGGATAAGATCAGAACT+TGG | 0.551009 | 2.4:+45373017 | MS.gene85301:CDS |
| TCAATTCAGCCGGAAGGAGA+AGG | 0.553755 | 2.4:+45374578 | MS.gene85301:CDS |
| TACCAAAAGGGAAACCAGAT+GGG | 0.568542 | 2.4:+45374093 | MS.gene85301:CDS |
| TTTATCCAAAAGAGGTAGTG+AGG | 0.570766 | 2.4:+45373133 | MS.gene85301:CDS |
| TGTAGACAACTTGAAACAGT+TGG | 0.574219 | 2.4:+45373813 | MS.gene85301:CDS |
| ATACCAAAAGGGAAACCAGA+TGG | 0.583648 | 2.4:+45374092 | MS.gene85301:CDS |
| CATGATAAAGGTGAATGGAT+TGG | 0.585265 | 2.4:+45373790 | MS.gene85301:CDS |
| TCGTAAATCTCAAACCATGT+TGG | 0.585577 | 2.4:-45374059 | None:intergenic |
| TCGGTATAAATTGAAGGCGA+TGG | 0.585759 | 2.4:-45374401 | None:intergenic |
| GGGTCAAAGGATAGATCAGA+TGG | 0.593228 | 2.4:+45372990 | MS.gene85301:CDS |
| CGTTTGAGAAACACTCAAAG+TGG | 0.613596 | 2.4:+45374245 | MS.gene85301:CDS |
| ACACCAAATAACATCAAATG+GGG | 0.617705 | 2.4:+45372969 | MS.gene85301:CDS |
| AGACAACTTGAAACAGTTGG+AGG | 0.617756 | 2.4:+45373816 | MS.gene85301:CDS |
| TGTGAATGGTTATCAACCGA+AGG | 0.620011 | 2.4:-45372915 | None:intergenic |
| AACACTTCAATTCAGCCGGA+AGG | 0.621409 | 2.4:+45374572 | MS.gene85301:CDS |
| ACCACTACGCACCTTGAACA+GGG | 0.621820 | 2.4:-45373767 | None:intergenic |
| GGACACAATGTGCATAGTGA+AGG | 0.626654 | 2.4:+45373907 | MS.gene85301:CDS |
| ATTTATATGGAAATTGTTGG+GGG | 0.632380 | 2.4:+45374311 | MS.gene85301:CDS |
| TTATCAACCGAAGGATCTTG+TGG | 0.634142 | 2.4:-45372906 | None:intergenic |
| AATTGGATAGGGAACCAACA+TGG | 0.651250 | 2.4:+45374045 | MS.gene85301:CDS |
| AAATCATTAAACCAAAGCAA+CGG | 0.653753 | 2.4:-45373237 | None:intergenic |
| GCCCTGTTCAAGGTGCGTAG+TGG | 0.664644 | 2.4:+45373766 | MS.gene85301:CDS |
| CAAAAGGGAAACCAGATGGG+TGG | 0.673959 | 2.4:+45374096 | MS.gene85301:CDS |
| CACCAAATAACATCAAATGG+GGG | 0.717165 | 2.4:+45372970 | MS.gene85301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATGATATCTTATAGT+TGG | + | chr2.4:45373381-45373400 | MS.gene85301:intron | 15.0% |
| !! | AATTGACAATGATATTTATA+TGG | + | chr2.4:45374298-45374317 | MS.gene85301:CDS | 15.0% |
| !! | ATATTTATATGGAAATTGTT+GGG | + | chr2.4:45374309-45374328 | MS.gene85301:CDS | 15.0% |
| !!! | ATTAAAAAGCTTTAATAGTA+GGG | + | chr2.4:45373723-45373742 | MS.gene85301:CDS | 15.0% |
| !! | AAAAAAAACCTGATAGTATT+TGG | + | chr2.4:45373459-45373478 | MS.gene85301:intron | 20.0% |
| !! | ACAAATGTAGTTACATAAAT+AGG | + | chr2.4:45373323-45373342 | MS.gene85301:intron | 20.0% |
| !! | CATAATTTCACAATATTCAT+TGG | - | chr2.4:45373369-45373388 | None:intergenic | 20.0% |
| !! | CTATGACTAATAAACAAAAT+AGG | + | chr2.4:45373872-45373891 | MS.gene85301:CDS | 20.0% |
| !! | GATATTTATATGGAAATTGT+TGG | + | chr2.4:45374308-45374327 | MS.gene85301:CDS | 20.0% |
| !! | TATTTATATGGAAATTGTTG+GGG | + | chr2.4:45374310-45374329 | MS.gene85301:CDS | 20.0% |
| !! | TCATATCATATAAGTCAAAT+AGG | - | chr2.4:45373584-45373603 | None:intergenic | 20.0% |
| !!! | AAAATCTTCAAGGAAAATTT+TGG | + | chr2.4:45373168-45373187 | MS.gene85301:CDS | 20.0% |
| !!! | CATTAAAAAGCTTTAATAGT+AGG | + | chr2.4:45373722-45373741 | MS.gene85301:CDS | 20.0% |
| !!! | TTAAAAAGCTTTAATAGTAG+GGG | + | chr2.4:45373724-45373743 | MS.gene85301:CDS | 20.0% |
| ! | AAATCATTAAACCAAAGCAA+CGG | - | chr2.4:45373240-45373259 | None:intergenic | 25.0% |
| ! | AATTTCCTATCATGTAGAAT+AGG | + | chr2.4:45373290-45373309 | MS.gene85301:intron | 25.0% |
| ! | ACAAACTTCATATACCAAAA+GGG | + | chr2.4:45374081-45374100 | MS.gene85301:CDS | 25.0% |
| ! | ATGAAGCTATGTATTTGAAA+AGG | - | chr2.4:45373648-45373667 | None:intergenic | 25.0% |
| ! | ATTTATATGGAAATTGTTGG+GGG | + | chr2.4:45374311-45374330 | MS.gene85301:CDS | 25.0% |
| ! | CAGAGGAAAGTTATATAAAT+AGG | + | chr2.4:45373502-45373521 | MS.gene85301:intron | 25.0% |
| ! | TAGGATGATATATCTATATC+TGG | - | chr2.4:45372948-45372967 | None:intergenic | 25.0% |
| ! | TATTTCCTATTCTACATGAT+AGG | - | chr2.4:45373298-45373317 | None:intergenic | 25.0% |
| ! | TCATTGTCAATTTCTTCAAT+AGG | - | chr2.4:45374290-45374309 | None:intergenic | 25.0% |
| ! | TGCTATAACAAAAATCTTCA+AGG | + | chr2.4:45373158-45373177 | MS.gene85301:CDS | 25.0% |
| !! | TAAAAAGCTTTAATAGTAGG+GGG | + | chr2.4:45373725-45373744 | MS.gene85301:CDS | 25.0% |
| !! | TGAATTGAAGTGTTCATATT+AGG | - | chr2.4:45374566-45374585 | None:intergenic | 25.0% |
| !!! | CATACTAATTTGTTGTTTGT+TGG | + | chr2.4:45374004-45374023 | MS.gene85301:intron | 25.0% |
| !!! | CATGACATTTTTTTGTTTGT+AGG | + | chr2.4:45373665-45373684 | MS.gene85301:intron | 25.0% |
| !!! | GCTTTGGTTTAATGATTTTA+AGG | + | chr2.4:45373242-45373261 | MS.gene85301:CDS | 25.0% |
| !!! | TAATAGTAACTCTTTTTTGC+AGG | + | chr2.4:45374204-45374223 | MS.gene85301:intron | 25.0% |
| AAAAGAGAAGCAATTCCAAT+AGG | - | chr2.4:45373559-45373578 | None:intergenic | 30.0% | |
| ACACACCAAATAACATCAAA+TGG | + | chr2.4:45372967-45372986 | MS.gene85301:CDS | 30.0% | |
| ACACCAAATAACATCAAATG+GGG | + | chr2.4:45372969-45372988 | MS.gene85301:CDS | 30.0% | |
| ATTAAAAAATGCCCTGTTCA+AGG | + | chr2.4:45373756-45373775 | MS.gene85301:CDS | 30.0% | |
| ATTTGGATAAGATCAGAACT+TGG | + | chr2.4:45373017-45373036 | MS.gene85301:CDS | 30.0% | |
| CACACCAAATAACATCAAAT+GGG | + | chr2.4:45372968-45372987 | MS.gene85301:CDS | 30.0% | |
| CTAGAGTGCATAGAAAAAAA+TGG | + | chr2.4:45373941-45373960 | MS.gene85301:CDS | 30.0% | |
| GAAAGATGCAAAAGAAGATA+AGG | + | chr2.4:45373209-45373228 | MS.gene85301:CDS | 30.0% | |
| GACAAACTTCATATACCAAA+AGG | + | chr2.4:45374080-45374099 | MS.gene85301:CDS | 30.0% | |
| TATGTGTAACATGATCCTAT+TGG | + | chr2.4:45373541-45373560 | MS.gene85301:intron | 30.0% | |
| TCTACATCGGTATAAATTGA+AGG | - | chr2.4:45374410-45374429 | None:intergenic | 30.0% | |
| TTAAATGGGAAGAAGAGAAA+TGG | + | chr2.4:45373839-45373858 | MS.gene85301:CDS | 30.0% | |
| TTATACCGATGTAGATTCTT+CGG | + | chr2.4:45374415-45374434 | MS.gene85301:CDS | 30.0% | |
| ! | ATCTTCAAGGAAAATTTTGG+TGG | + | chr2.4:45373171-45373190 | MS.gene85301:CDS | 30.0% |
| ! | ATGAAGCTTCATTGTTACTT+AGG | + | chr2.4:45373607-45373626 | MS.gene85301:intron | 30.0% |
| ! | TGATAGTATTTGGTAGCATA+GGG | + | chr2.4:45373469-45373488 | MS.gene85301:intron | 30.0% |
| ! | TTTCAGCTTTTATCCAAAAG+AGG | + | chr2.4:45373125-45373144 | MS.gene85301:intron | 30.0% |
| ! | TTTTTCCGAAGAATCTACAT+CGG | - | chr2.4:45374423-45374442 | None:intergenic | 30.0% |
| !! | TCTTCAAGGAAAATTTTGGT+GGG | + | chr2.4:45373172-45373191 | MS.gene85301:CDS | 30.0% |
| !! | TTTGATGTTATTTGGTGTGT+AGG | - | chr2.4:45372967-45372986 | None:intergenic | 30.0% |
| !!! | TATGTTTTAGAGAGTGGAAT+TGG | + | chr2.4:45374028-45374047 | MS.gene85301:intron | 30.0% |
| AGAAACGCTAAAACTGAAGA+TGG | + | chr2.4:45374508-45374527 | MS.gene85301:CDS | 35.0% | |
| ATAGATCAGATGGACGAATT+TGG | + | chr2.4:45373000-45373019 | MS.gene85301:CDS | 35.0% | |
| CACCAAATAACATCAAATGG+GGG | + | chr2.4:45372970-45372989 | MS.gene85301:CDS | 35.0% | |
| CATGATAAAGGTGAATGGAT+TGG | + | chr2.4:45373790-45373809 | MS.gene85301:CDS | 35.0% | |
| CTATGCTACCAAATACTATC+AGG | - | chr2.4:45373470-45373489 | None:intergenic | 35.0% | |
| GAAACAGTTGGAGGTTAAAT+GGG | + | chr2.4:45373825-45373844 | MS.gene85301:CDS | 35.0% | |
| GTTTGTAGGCTAAATTCAAG+TGG | + | chr2.4:45373679-45373698 | MS.gene85301:intron | 35.0% | |
| TATGAACACTTCAATTCAGC+CGG | + | chr2.4:45374568-45374587 | MS.gene85301:CDS | 35.0% | |
| TCGTAAATCTCAAACCATGT+TGG | - | chr2.4:45374062-45374081 | None:intergenic | 35.0% | |
| TGAAACAGTTGGAGGTTAAA+TGG | + | chr2.4:45373824-45373843 | MS.gene85301:CDS | 35.0% | |
| TGTAGACAACTTGAAACAGT+TGG | + | chr2.4:45373813-45373832 | MS.gene85301:CDS | 35.0% | |
| TTAGAGAGTGGAATTGGATA+GGG | + | chr2.4:45374034-45374053 | MS.gene85301:intron | 35.0% | |
| TTTAGAGAGTGGAATTGGAT+AGG | + | chr2.4:45374033-45374052 | MS.gene85301:intron | 35.0% | |
| TTTATCCAAAAGAGGTAGTG+AGG | + | chr2.4:45373133-45373152 | MS.gene85301:CDS | 35.0% | |
| ! | CAAAATAGGCAGTCTAAAGT+TGG | + | chr2.4:45373886-45373905 | MS.gene85301:CDS | 35.0% |
| ! | CTGATAGTATTTGGTAGCAT+AGG | + | chr2.4:45373468-45373487 | MS.gene85301:intron | 35.0% |
| ! | GATAGTATTTGGTAGCATAG+GGG | + | chr2.4:45373470-45373489 | MS.gene85301:intron | 35.0% |
| ! | GTTTCTCAAACGTTTGAGTT+TGG | - | chr2.4:45374237-45374256 | None:intergenic | 35.0% |
| ! | TATCTGGATTTGCTTGTGAA+TGG | - | chr2.4:45372932-45372951 | None:intergenic | 35.0% |
| !! | CTTCAAGGAAAATTTTGGTG+GGG | + | chr2.4:45373173-45373192 | MS.gene85301:CDS | 35.0% |
| !!! | GTTGGTTATGTTTTAGAGAG+TGG | + | chr2.4:45374022-45374041 | MS.gene85301:intron | 35.0% |
| AATTGGATAGGGAACCAACA+TGG | + | chr2.4:45374045-45374064 | MS.gene85301:CDS | 40.0% | |
| AGACAACTTGAAACAGTTGG+AGG | + | chr2.4:45373816-45373835 | MS.gene85301:CDS | 40.0% | |
| ATAAGGATGTACCGTTGCTT+TGG | + | chr2.4:45373226-45373245 | MS.gene85301:CDS | 40.0% | |
| ATACCAAAAGGGAAACCAGA+TGG | + | chr2.4:45374092-45374111 | MS.gene85301:CDS | 40.0% | |
| CGTTTGAGAAACACTCAAAG+TGG | + | chr2.4:45374245-45374264 | MS.gene85301:CDS | 40.0% | |
| CTTTAATAGTAGGGGGTCTT+TGG | + | chr2.4:45373732-45373751 | MS.gene85301:CDS | 40.0% | |
| GACCCCCATTTGATGTTATT+TGG | - | chr2.4:45372975-45372994 | None:intergenic | 40.0% | |
| GTGGTCATGATAAAGGTGAA+TGG | + | chr2.4:45373785-45373804 | MS.gene85301:CDS | 40.0% | |
| GTTTCATTAAACCACCCATC+TGG | - | chr2.4:45374110-45374129 | None:intergenic | 40.0% | |
| TAACATCAAATGGGGGTCAA+AGG | + | chr2.4:45372977-45372996 | MS.gene85301:CDS | 40.0% | |
| TACCAAAAGGGAAACCAGAT+GGG | + | chr2.4:45374093-45374112 | MS.gene85301:CDS | 40.0% | |
| TCGGTATAAATTGAAGGCGA+TGG | - | chr2.4:45374404-45374423 | None:intergenic | 40.0% | |
| TCTATGCACTCTAGCAGATA+TGG | - | chr2.4:45373935-45373954 | None:intergenic | 40.0% | |
| TGTGAATGGTTATCAACCGA+AGG | - | chr2.4:45372918-45372937 | None:intergenic | 40.0% | |
| TTATCAACCGAAGGATCTTG+TGG | - | chr2.4:45372909-45372928 | None:intergenic | 40.0% | |
| TTCGGAAAAAGTTGCTGCTA+TGG | + | chr2.4:45374433-45374452 | MS.gene85301:CDS | 40.0% | |
| AACACTTCAATTCAGCCGGA+AGG | + | chr2.4:45374572-45374591 | MS.gene85301:CDS | 45.0% | |
| AGCGCTTGGAGCAAATGATT+GGG | + | chr2.4:45374531-45374550 | MS.gene85301:CDS | 45.0% | |
| CATAGGGGATATACAAGCAG+AGG | + | chr2.4:45373485-45373504 | MS.gene85301:intron | 45.0% | |
| CCATTATCACCTTCTCCTTC+CGG | - | chr2.4:45374590-45374609 | None:intergenic | 45.0% | |
| GGAAAAAGTTGCTGCTATGG+AGG | + | chr2.4:45374436-45374455 | MS.gene85301:CDS | 45.0% | |
| GGACACAATGTGCATAGTGA+AGG | + | chr2.4:45373907-45373926 | MS.gene85301:CDS | 45.0% | |
| GGATATGCCACAAGATCCTT+CGG | + | chr2.4:45372899-45372918 | MS.gene85301:CDS | 45.0% | |
| GGGTCAAAGGATAGATCAGA+TGG | + | chr2.4:45372990-45373009 | MS.gene85301:CDS | 45.0% | |
| GTGCGTAGTGGTCATGATAA+AGG | + | chr2.4:45373778-45373797 | MS.gene85301:CDS | 45.0% | |
| ! | AAAACTGAAGATGGAGCGCT+TGG | + | chr2.4:45374517-45374536 | MS.gene85301:CDS | 45.0% |
| ! | AACAAGAAGGGGCGCATATT+TGG | + | chr2.4:45374338-45374357 | MS.gene85301:CDS | 45.0% |
| ! | AAGGGGCGCATATTTGGATT+AGG | + | chr2.4:45374344-45374363 | MS.gene85301:CDS | 45.0% |
| !! | GTTGGGGGCATTAACAAGAA+GGG | + | chr2.4:45374326-45374345 | MS.gene85301:CDS | 45.0% |
| !! | TGTTGGGGGCATTAACAAGA+AGG | + | chr2.4:45374325-45374344 | MS.gene85301:CDS | 45.0% |
| !! | TTGGGGGCATTAACAAGAAG+GGG | + | chr2.4:45374327-45374346 | MS.gene85301:CDS | 45.0% |
| ACCACTACGCACCTTGAACA+GGG | - | chr2.4:45373770-45373789 | None:intergenic | 50.0% | |
| CAAAAGGGAAACCAGATGGG+TGG | + | chr2.4:45374096-45374115 | MS.gene85301:CDS | 50.0% | |
| CCGGAAGGAGAAGGTGATAA+TGG | + | chr2.4:45374587-45374606 | MS.gene85301:CDS | 50.0% | |
| GAGCGCTTGGAGCAAATGAT+TGG | + | chr2.4:45374530-45374549 | MS.gene85301:CDS | 50.0% | |
| TCAATTCAGCCGGAAGGAGA+AGG | + | chr2.4:45374578-45374597 | MS.gene85301:CDS | 50.0% | |
| ! | GCACTCCTCACTACCTCTTT+TGG | - | chr2.4:45373141-45373160 | None:intergenic | 50.0% |
| !! | AGGAAAATTTTGGTGGGGCG+TGG | + | chr2.4:45373178-45373197 | MS.gene85301:CDS | 50.0% |
| !! | CACCCATCTGGTTTCCCTTT+TGG | - | chr2.4:45374098-45374117 | None:intergenic | 50.0% |
| GACCACTACGCACCTTGAAC+AGG | - | chr2.4:45373771-45373790 | None:intergenic | 55.0% | |
| GCCCTGTTCAAGGTGCGTAG+TGG | + | chr2.4:45373766-45373785 | MS.gene85301:CDS | 60.0% | |
| TTGGTGGGGCGTGGTCATGC+TGG | + | chr2.4:45373187-45373206 | MS.gene85301:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 45372897 | 45374634 | 45372897 | ID=MS.gene85301 |
| chr2.4 | mRNA | 45372897 | 45374634 | 45372897 | ID=MS.gene85301.t1;Parent=MS.gene85301 |
| chr2.4 | exon | 45372897 | 45373045 | 45372897 | ID=MS.gene85301.t1.exon1;Parent=MS.gene85301.t1 |
| chr2.4 | CDS | 45372897 | 45373045 | 45372897 | ID=cds.MS.gene85301.t1;Parent=MS.gene85301.t1 |
| chr2.4 | exon | 45373131 | 45373263 | 45373131 | ID=MS.gene85301.t1.exon2;Parent=MS.gene85301.t1 |
| chr2.4 | CDS | 45373131 | 45373263 | 45373131 | ID=cds.MS.gene85301.t1;Parent=MS.gene85301.t1 |
| chr2.4 | exon | 45373718 | 45373966 | 45373718 | ID=MS.gene85301.t1.exon3;Parent=MS.gene85301.t1 |
| chr2.4 | CDS | 45373718 | 45373966 | 45373718 | ID=cds.MS.gene85301.t1;Parent=MS.gene85301.t1 |
| chr2.4 | exon | 45374038 | 45374117 | 45374038 | ID=MS.gene85301.t1.exon4;Parent=MS.gene85301.t1 |
| chr2.4 | CDS | 45374038 | 45374117 | 45374038 | ID=cds.MS.gene85301.t1;Parent=MS.gene85301.t1 |
| chr2.4 | exon | 45374226 | 45374634 | 45374226 | ID=MS.gene85301.t1.exon5;Parent=MS.gene85301.t1 |
| chr2.4 | CDS | 45374226 | 45374634 | 45374226 | ID=cds.MS.gene85301.t1;Parent=MS.gene85301.t1 |
| Gene Sequence |
| Protein sequence |
