Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85381.t1 | XP_003595135.2 | 83.2 | 297 | 50 | 0 | 1 | 297 | 6 | 302 | 2.70E-122 | 448.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85381.t1 | Q9SZI6 | 35.6 | 267 | 128 | 9 | 66 | 291 | 89 | 352 | 1.5e-20 | 101.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85381.t1 | G7IIE3 | 83.2 | 297 | 50 | 0 | 1 | 297 | 1 | 297 | 1.9e-122 | 448.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene85381.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050809 | MS.gene85381 | -0.815229 | 1.03E-51 | -1.69E-46 |
MS.gene052870 | MS.gene85381 | 0.82375 | 1.17E-53 | -1.69E-46 |
MS.gene052872 | MS.gene85381 | 0.812036 | 5.19E-51 | -1.69E-46 |
MS.gene05494 | MS.gene85381 | 0.819174 | 1.33E-52 | -1.69E-46 |
MS.gene056903 | MS.gene85381 | 0.814567 | 1.44E-51 | -1.69E-46 |
MS.gene060818 | MS.gene85381 | 0.812908 | 3.35E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85381.t1 | MTR_2g038720 | 91.582 | 297 | 25 | 0 | 1 | 297 | 1 | 297 | 2.06e-179 | 496 |
MS.gene85381.t1 | MTR_4g126350 | 43.807 | 331 | 137 | 16 | 3 | 291 | 4 | 327 | 1.11e-47 | 162 |
MS.gene85381.t1 | MTR_1g016170 | 62.195 | 82 | 25 | 2 | 147 | 228 | 170 | 245 | 1.26e-25 | 103 |
MS.gene85381.t1 | MTR_4g121110 | 62.000 | 50 | 19 | 0 | 159 | 208 | 25 | 74 | 3.19e-17 | 77.0 |
MS.gene85381.t1 | MTR_7g112330 | 75.000 | 36 | 9 | 0 | 164 | 199 | 22 | 57 | 5.18e-14 | 68.2 |
MS.gene85381.t1 | MTR_5g020230 | 44.706 | 85 | 41 | 1 | 122 | 200 | 74 | 158 | 3.01e-13 | 68.2 |
MS.gene85381.t1 | MTR_1g116010 | 64.865 | 37 | 13 | 0 | 163 | 199 | 163 | 199 | 1.04e-11 | 63.9 |
MS.gene85381.t1 | MTR_8g077510 | 65.789 | 38 | 13 | 0 | 163 | 200 | 124 | 161 | 7.22e-11 | 61.6 |
MS.gene85381.t1 | MTR_1g006650 | 42.647 | 68 | 38 | 1 | 164 | 230 | 234 | 301 | 8.37e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85381.t1 | AT4G26150 | 35.714 | 294 | 141 | 10 | 44 | 291 | 61 | 352 | 8.26e-27 | 107 |
MS.gene85381.t1 | AT5G56860 | 34.826 | 201 | 82 | 9 | 46 | 197 | 63 | 263 | 3.54e-19 | 87.4 |
MS.gene85381.t1 | AT5G49300 | 62.500 | 56 | 20 | 1 | 147 | 201 | 18 | 73 | 6.23e-18 | 79.0 |
MS.gene85381.t1 | AT5G26930 | 73.171 | 41 | 11 | 0 | 161 | 201 | 23 | 63 | 1.99e-17 | 77.0 |
MS.gene85381.t1 | AT3G06740 | 63.830 | 47 | 17 | 0 | 156 | 202 | 33 | 79 | 5.42e-15 | 71.2 |
MS.gene85381.t1 | AT3G16870 | 68.293 | 41 | 13 | 0 | 161 | 201 | 39 | 79 | 2.27e-14 | 70.5 |
MS.gene85381.t1 | AT4G16141 | 65.854 | 41 | 14 | 0 | 161 | 201 | 34 | 74 | 4.15e-14 | 70.1 |
MS.gene85381.t1 | AT1G08010 | 42.857 | 84 | 47 | 1 | 147 | 229 | 203 | 286 | 1.74e-13 | 70.1 |
MS.gene85381.t1 | AT1G08010 | 42.857 | 84 | 47 | 1 | 147 | 229 | 203 | 286 | 1.74e-13 | 70.1 |
MS.gene85381.t1 | AT1G08010 | 42.857 | 84 | 47 | 1 | 147 | 229 | 203 | 286 | 1.74e-13 | 70.1 |
MS.gene85381.t1 | AT3G50870 | 61.538 | 52 | 19 | 1 | 163 | 214 | 151 | 201 | 1.39e-12 | 67.4 |
MS.gene85381.t1 | AT1G08000 | 40.698 | 86 | 47 | 2 | 115 | 199 | 171 | 253 | 1.40e-12 | 67.4 |
MS.gene85381.t1 | AT1G08000 | 40.698 | 86 | 47 | 2 | 115 | 199 | 171 | 253 | 1.40e-12 | 67.4 |
MS.gene85381.t1 | AT4G36620 | 59.184 | 49 | 20 | 0 | 159 | 207 | 70 | 118 | 3.95e-12 | 64.7 |
MS.gene85381.t1 | AT2G18380 | 70.732 | 41 | 11 | 1 | 164 | 203 | 92 | 132 | 4.82e-12 | 64.3 |
MS.gene85381.t1 | AT2G45050 | 37.500 | 80 | 49 | 1 | 152 | 230 | 167 | 246 | 1.26e-11 | 64.3 |
MS.gene85381.t1 | AT3G60530 | 32.407 | 108 | 67 | 2 | 131 | 237 | 130 | 232 | 1.62e-11 | 63.5 |
MS.gene85381.t1 | AT4G32890 | 36.458 | 96 | 59 | 2 | 164 | 257 | 197 | 292 | 1.96e-11 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATCTTCTGGCTTGCTTAA+TGG | 0.177324 | 2.1:-47598340 | MS.gene85381:CDS |
ATCTTGTTTGATCTTGATTT+TGG | 0.229038 | 2.1:+47599954 | None:intergenic |
CTACTCATGGCTTTATCTTC+TGG | 0.251698 | 2.1:-47598352 | MS.gene85381:CDS |
TTTCAAACAACAACACTGTT+AGG | 0.256322 | 2.1:-47599403 | MS.gene85381:CDS |
TTAATCATTCTCTTCTTTGA+TGG | 0.270861 | 2.1:+47599530 | None:intergenic |
TCCTCAGTTCTTACTAGATT+TGG | 0.275505 | 2.1:+47599443 | None:intergenic |
ATCAAACAAGATCTTATTCT+TGG | 0.275784 | 2.1:-47599943 | MS.gene85381:CDS |
GGATCATCAAGAAGTGAAAA+AGG | 0.339108 | 2.1:-47599627 | MS.gene85381:CDS |
AACTTCTTTCCCTTCACATA+TGG | 0.359398 | 2.1:+47598541 | None:intergenic |
CACCATTTGCAGCGGCTGCA+AGG | 0.367222 | 2.1:+47598587 | None:intergenic |
CATCTTGAGGGAAAACTTGA+TGG | 0.376163 | 2.1:+47598392 | None:intergenic |
GCCCTTGCAGCCGCTGCAAA+TGG | 0.402224 | 2.1:-47598589 | MS.gene85381:CDS |
CTCTGGAGAAGTGGACCAAC+TGG | 0.407869 | 2.1:-47599347 | MS.gene85381:CDS |
ACCATTTGCAGCGGCTGCAA+GGG | 0.414991 | 2.1:+47598588 | None:intergenic |
TTGTAACTTCTGGTGAATCA+TGG | 0.418749 | 2.1:-47599649 | MS.gene85381:CDS |
CAAAGAAGAGAATGATTAAG+AGG | 0.444414 | 2.1:-47599526 | MS.gene85381:CDS |
TCAAACAAGATCTTATTCTT+GGG | 0.457205 | 2.1:-47599942 | MS.gene85381:CDS |
TTCAAACAACAACACTGTTA+GGG | 0.464863 | 2.1:-47599402 | MS.gene85381:CDS |
GAGAATGATTAAGAGGATGA+TGG | 0.470043 | 2.1:-47599519 | MS.gene85381:CDS |
TAGAGAAGAAGATGAAGAAG+TGG | 0.474019 | 2.1:+47599997 | None:intergenic |
TTGAAGATTTGATAACAAGT+TGG | 0.482551 | 2.1:-47598432 | MS.gene85381:CDS |
AGTTGCAAGTCAGAAGGAAA+AGG | 0.484061 | 2.1:-47598522 | MS.gene85381:CDS |
CTACACCATCACTTAATATG+TGG | 0.485834 | 2.1:+47599912 | None:intergenic |
GAGGATGATGGAAGATCAAA+GGG | 0.487515 | 2.1:-47599507 | MS.gene85381:CDS |
TGTAACTTCTGGTGAATCAT+GGG | 0.493931 | 2.1:-47599648 | MS.gene85381:CDS |
GATGCAGAATAACGATAAGT+TGG | 0.493962 | 2.1:+47600094 | None:intergenic |
TTGGTCCACTTCTCCAGAGA+GGG | 0.496789 | 2.1:+47599351 | None:intergenic |
ATAACGATAAGTTGGTATCA+TGG | 0.500444 | 2.1:+47600102 | None:intergenic |
AACAAGTTGGAGCAACAACT+TGG | 0.506773 | 2.1:-47598419 | MS.gene85381:CDS |
ACACAACTAAGACCCCTCTC+TGG | 0.508622 | 2.1:-47599364 | MS.gene85381:CDS |
AATGTGCACCACAATTGAAA+AGG | 0.511689 | 2.1:-47598486 | MS.gene85381:CDS |
AAAATTTAGCATTCATCAGA+AGG | 0.513032 | 2.1:+47598313 | None:intergenic |
CAGCCTCCTTCACATCTTGA+GGG | 0.514868 | 2.1:+47598380 | None:intergenic |
GTTGATTAGTATTGAAGAGA+TGG | 0.528693 | 2.1:+47600023 | None:intergenic |
AGAGGATGATGGAAGATCAA+AGG | 0.536944 | 2.1:-47599508 | MS.gene85381:CDS |
GCAGCCTCCTTCACATCTTG+AGG | 0.537105 | 2.1:+47598379 | None:intergenic |
AGTCACTTTGCAATGCCTGC+GGG | 0.545864 | 2.1:-47598636 | MS.gene85381:CDS |
AAGACCCCTCTCTGGAGAAG+TGG | 0.553472 | 2.1:-47599356 | MS.gene85381:CDS |
GAAAGAAGTTGCAAGTCAGA+AGG | 0.562695 | 2.1:-47598528 | MS.gene85381:CDS |
CATATTAAGTGATGGTGTAG+AGG | 0.563231 | 2.1:-47599909 | MS.gene85381:intron |
GGCAGAGAAACCATATGTGA+AGG | 0.565007 | 2.1:-47598551 | MS.gene85381:CDS |
TGCACCACAATTGAAAAGGA+AGG | 0.566431 | 2.1:-47598482 | MS.gene85381:CDS |
GGAGGCTGCTATTCTACTCA+TGG | 0.567161 | 2.1:-47598365 | MS.gene85381:CDS |
AAGTGGACCAACTGGTCCCA+AGG | 0.591915 | 2.1:-47599339 | MS.gene85381:intron |
TGCAAATGGTGAAACTCTTG+TGG | 0.595671 | 2.1:-47598575 | MS.gene85381:CDS |
AGAGAGGGGTCTTAGTTGTG+TGG | 0.598153 | 2.1:+47599366 | None:intergenic |
ATCTTGAGGGAAAACTTGAT+GGG | 0.607027 | 2.1:+47598393 | None:intergenic |
ATATGTACCTTGGGACCAGT+TGG | 0.609719 | 2.1:+47599332 | None:intergenic |
CAGTCACTTTGCAATGCCTG+CGG | 0.611660 | 2.1:-47598637 | MS.gene85381:CDS |
TCAAACCACATATTAAGTGA+TGG | 0.619574 | 2.1:-47599917 | MS.gene85381:CDS |
TGGTCCACTTCTCCAGAGAG+GGG | 0.626088 | 2.1:+47599352 | None:intergenic |
GCAGAGAAACCATATGTGAA+GGG | 0.631828 | 2.1:-47598550 | MS.gene85381:CDS |
GCACCACAATTGAAAAGGAA+GGG | 0.634758 | 2.1:-47598481 | MS.gene85381:CDS |
TTTCCCTCAAGATGTGAAGG+AGG | 0.643884 | 2.1:-47598383 | MS.gene85381:CDS |
AAGAGTTTCACCATTTGCAG+CGG | 0.647090 | 2.1:+47598579 | None:intergenic |
AAATGGTGAAACTCTTGTGG+TGG | 0.679475 | 2.1:-47598572 | MS.gene85381:CDS |
GTTGGTCCACTTCTCCAGAG+AGG | 0.682429 | 2.1:+47599350 | None:intergenic |
ACCAAATCTAGTAAGAACTG+AGG | 0.700207 | 2.1:-47599444 | MS.gene85381:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATAATTTTTTTTTAATTA+TGG | - | chr2.1:47599488-47599507 | MS.gene85381:CDS | 0.0% |
!!! | ATATATATATAAAATTTTAA+AGG | + | chr2.1:47598583-47598602 | None:intergenic | 0.0% |
!!! | TATATATATAAAATTTTAAA+GGG | + | chr2.1:47598582-47598601 | None:intergenic | 0.0% |
!! | AGTAGTAATAAAAAAAAAAT+TGG | + | chr2.1:47599255-47599274 | None:intergenic | 10.0% |
!! | TCATTATTTAGATCAAAAAA+AGG | + | chr2.1:47598363-47598382 | None:intergenic | 15.0% |
!! | TACAAAATTCTTAACCTAAA+AGG | + | chr2.1:47598754-47598773 | None:intergenic | 20.0% |
!!! | TTAGAGAAATGTTTTAAAGA+TGG | - | chr2.1:47599193-47599212 | MS.gene85381:intron | 20.0% |
! | ATCAAACAAGATCTTATTCT+TGG | - | chr2.1:47598475-47598494 | MS.gene85381:CDS | 25.0% |
! | GAGTTCGAGATTAATTAATT+TGG | - | chr2.1:47599215-47599234 | MS.gene85381:intron | 25.0% |
! | TCAAACAAGATCTTATTCTT+GGG | - | chr2.1:47598476-47598495 | MS.gene85381:CDS | 25.0% |
! | TGAAAAAGGATGAAAAAGAT+TGG | - | chr2.1:47598805-47598824 | MS.gene85381:intron | 25.0% |
! | TTAATCATTCTCTTCTTTGA+TGG | + | chr2.1:47598891-47598910 | None:intergenic | 25.0% |
!! | GTTAAGAATTTTGTAACTTC+TGG | - | chr2.1:47598759-47598778 | MS.gene85381:intron | 25.0% |
!! | TTCATGATTAAGCTCTTTTA+TGG | - | chr2.1:47599635-47599654 | MS.gene85381:CDS | 25.0% |
!! | TTGAAGATTTGATAACAAGT+TGG | - | chr2.1:47599986-47600005 | MS.gene85381:CDS | 25.0% |
!! | TTTAGATCAAAAAAAGGCAT+AGG | + | chr2.1:47598357-47598376 | None:intergenic | 25.0% |
!!! | ATCTTGTTTGATCTTGATTT+TGG | + | chr2.1:47598467-47598486 | None:intergenic | 25.0% |
ATATTAGATGTCAGTCTATG+AGG | - | chr2.1:47599329-47599348 | MS.gene85381:intron | 30.0% | |
CAAAGAAGAGAATGATTAAG+AGG | - | chr2.1:47598892-47598911 | MS.gene85381:intron | 30.0% | |
GAAAACTAAAGCCTCTATTA+TGG | + | chr2.1:47599373-47599392 | None:intergenic | 30.0% | |
GAACAAATCTTATACAAGCA+AGG | + | chr2.1:47599618-47599637 | None:intergenic | 30.0% | |
TCAAACCACATATTAAGTGA+TGG | - | chr2.1:47598501-47598520 | MS.gene85381:CDS | 30.0% | |
TTCAAACAACAACACTGTTA+GGG | - | chr2.1:47599016-47599035 | MS.gene85381:intron | 30.0% | |
TTGTTTCAGAACCATAATAG+AGG | - | chr2.1:47599359-47599378 | MS.gene85381:CDS | 30.0% | |
TTTCAAACAACAACACTGTT+AGG | - | chr2.1:47599015-47599034 | MS.gene85381:intron | 30.0% | |
! | AGACGAGTATGAAAGTTTTA+TGG | - | chr2.1:47598836-47598855 | MS.gene85381:intron | 30.0% |
! | ATTAAGCTCTTTTATGGCTT+AGG | - | chr2.1:47599641-47599660 | MS.gene85381:CDS | 30.0% |
! | GTTGATTAGTATTGAAGAGA+TGG | + | chr2.1:47598398-47598417 | None:intergenic | 30.0% |
!! | CTATTATGGTTCTGAAACAA+TGG | + | chr2.1:47599359-47599378 | None:intergenic | 30.0% |
AACTTCTTTCCCTTCACATA+TGG | + | chr2.1:47599880-47599899 | None:intergenic | 35.0% | |
AATGTGCACCACAATTGAAA+AGG | - | chr2.1:47599932-47599951 | MS.gene85381:CDS | 35.0% | |
ACCAAATCTAGTAAGAACTG+AGG | - | chr2.1:47598974-47598993 | MS.gene85381:intron | 35.0% | |
ATCTTGAGGGAAAACTTGAT+GGG | + | chr2.1:47600028-47600047 | None:intergenic | 35.0% | |
CTACACCATCACTTAATATG+TGG | + | chr2.1:47598509-47598528 | None:intergenic | 35.0% | |
GAGAATGATTAAGAGGATGA+TGG | - | chr2.1:47598899-47598918 | MS.gene85381:intron | 35.0% | |
GATGCAGAATAACGATAAGT+TGG | + | chr2.1:47598327-47598346 | None:intergenic | 35.0% | |
GGATCATCAAGAAGTGAAAA+AGG | - | chr2.1:47598791-47598810 | MS.gene85381:intron | 35.0% | |
TAGAGAAGAAGATGAAGAAG+TGG | + | chr2.1:47598424-47598443 | None:intergenic | 35.0% | |
TCCTCAGTTCTTACTAGATT+TGG | + | chr2.1:47598978-47598997 | None:intergenic | 35.0% | |
TGTAACTTCTGGTGAATCAT+GGG | - | chr2.1:47598770-47598789 | MS.gene85381:intron | 35.0% | |
TTGTAACTTCTGGTGAATCA+TGG | - | chr2.1:47598769-47598788 | MS.gene85381:intron | 35.0% | |
! | AGATCAAAAAAAGGCATAGG+AGG | + | chr2.1:47598354-47598373 | None:intergenic | 35.0% |
! | CATATTAAGTGATGGTGTAG+AGG | - | chr2.1:47598509-47598528 | MS.gene85381:CDS | 35.0% |
! | CATGTGATTGTCATCCTTTT+AGG | - | chr2.1:47598737-47598756 | MS.gene85381:intron | 35.0% |
! | TTACCCTTCCTTTTCAATTG+TGG | + | chr2.1:47599943-47599962 | None:intergenic | 35.0% |
!! | GTATGAAAGTTTTATGGCTG+AGG | - | chr2.1:47598842-47598861 | MS.gene85381:intron | 35.0% |
!! | TTATCTTCTGGCTTGCTTAA+TGG | - | chr2.1:47600078-47600097 | MS.gene85381:CDS | 35.0% |
AAATGGTGAAACTCTTGTGG+TGG | - | chr2.1:47599846-47599865 | MS.gene85381:intron | 40.0% | |
AAGAGTTTCACCATTTGCAG+CGG | + | chr2.1:47599842-47599861 | None:intergenic | 40.0% | |
AGTTGCAAGTCAGAAGGAAA+AGG | - | chr2.1:47599896-47599915 | MS.gene85381:intron | 40.0% | |
CATCTTGAGGGAAAACTTGA+TGG | + | chr2.1:47600029-47600048 | None:intergenic | 40.0% | |
GAAAGAAGTTGCAAGTCAGA+AGG | - | chr2.1:47599890-47599909 | MS.gene85381:intron | 40.0% | |
GCACCACAATTGAAAAGGAA+GGG | - | chr2.1:47599937-47599956 | MS.gene85381:CDS | 40.0% | |
GCAGAGAAACCATATGTGAA+GGG | - | chr2.1:47599868-47599887 | MS.gene85381:intron | 40.0% | |
TGCAAATGGTGAAACTCTTG+TGG | - | chr2.1:47599843-47599862 | MS.gene85381:intron | 40.0% | |
TGCACCACAATTGAAAAGGA+AGG | - | chr2.1:47599936-47599955 | MS.gene85381:CDS | 40.0% | |
! | AACAAGTTGGAGCAACAACT+TGG | - | chr2.1:47599999-47600018 | MS.gene85381:CDS | 40.0% |
! | AGTTTTCCCTCAAGATGTGA+AGG | - | chr2.1:47600032-47600051 | MS.gene85381:CDS | 40.0% |
!! | AGAGGATGATGGAAGATCAA+AGG | - | chr2.1:47598910-47598929 | MS.gene85381:intron | 40.0% |
!! | CTACTCATGGCTTTATCTTC+TGG | - | chr2.1:47600066-47600085 | MS.gene85381:CDS | 40.0% |
!! | GAGGATGATGGAAGATCAAA+GGG | - | chr2.1:47598911-47598930 | MS.gene85381:intron | 40.0% |
ATATGTACCTTGGGACCAGT+TGG | + | chr2.1:47599089-47599108 | None:intergenic | 45.0% | |
CCCAAGGTACATATTGCTCA+CGG | - | chr2.1:47599095-47599114 | MS.gene85381:intron | 45.0% | |
CCGTGAGCAATATGTACCTT+GGG | + | chr2.1:47599098-47599117 | None:intergenic | 45.0% | |
GGCAGAGAAACCATATGTGA+AGG | - | chr2.1:47599867-47599886 | MS.gene85381:intron | 45.0% | |
TCCGTGAGCAATATGTACCT+TGG | + | chr2.1:47599099-47599118 | None:intergenic | 45.0% | |
TTTCCCTCAAGATGTGAAGG+AGG | - | chr2.1:47600035-47600054 | MS.gene85381:CDS | 45.0% | |
! | TTTTCTTTGTCGAATCCCGC+AGG | + | chr2.1:47599800-47599819 | None:intergenic | 45.0% |
!!! | ATATATATAAAATTTTAAAG+GGG | + | chr2.1:47598581-47598600 | None:intergenic | 5.0% |
!!! | GAAAAAAATATTATTTTAAA+AGG | + | chr2.1:47599127-47599146 | None:intergenic | 5.0% |
ACACAACTAAGACCCCTCTC+TGG | - | chr2.1:47599054-47599073 | MS.gene85381:intron | 50.0% | |
AGAGAGGGGTCTTAGTTGTG+TGG | + | chr2.1:47599055-47599074 | None:intergenic | 50.0% | |
CAGCCTCCTTCACATCTTGA+GGG | + | chr2.1:47600041-47600060 | None:intergenic | 50.0% | |
GGAGGCTGCTATTCTACTCA+TGG | - | chr2.1:47600053-47600072 | MS.gene85381:CDS | 50.0% | |
TTGGTCCACTTCTCCAGAGA+GGG | + | chr2.1:47599070-47599089 | None:intergenic | 50.0% | |
! | AGTCACTTTGCAATGCCTGC+GGG | - | chr2.1:47599782-47599801 | MS.gene85381:intron | 50.0% |
! | CAGTCACTTTGCAATGCCTG+CGG | - | chr2.1:47599781-47599800 | MS.gene85381:intron | 50.0% |
AAGTGGACCAACTGGTCCCA+AGG | - | chr2.1:47599079-47599098 | MS.gene85381:intron | 55.0% | |
ACCATTTGCAGCGGCTGCAA+GGG | + | chr2.1:47599833-47599852 | None:intergenic | 55.0% | |
GCAGCCTCCTTCACATCTTG+AGG | + | chr2.1:47600042-47600061 | None:intergenic | 55.0% | |
GTTGGTCCACTTCTCCAGAG+AGG | + | chr2.1:47599071-47599090 | None:intergenic | 55.0% | |
TGGTCCACTTCTCCAGAGAG+GGG | + | chr2.1:47599069-47599088 | None:intergenic | 55.0% | |
! | AAGACCCCTCTCTGGAGAAG+TGG | - | chr2.1:47599062-47599081 | MS.gene85381:intron | 55.0% |
! | CTCTGGAGAAGTGGACCAAC+TGG | - | chr2.1:47599071-47599090 | MS.gene85381:intron | 55.0% |
CACCATTTGCAGCGGCTGCA+AGG | + | chr2.1:47599834-47599853 | None:intergenic | 60.0% | |
GCCCTTGCAGCCGCTGCAAA+TGG | - | chr2.1:47599829-47599848 | MS.gene85381:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 47598318 | 47600122 | 47598318 | ID=MS.gene85381 |
chr2.1 | mRNA | 47598318 | 47600122 | 47598318 | ID=MS.gene85381.t1;Parent=MS.gene85381 |
chr2.1 | exon | 47599910 | 47600122 | 47599910 | ID=MS.gene85381.t1.exon1;Parent=MS.gene85381.t1 |
chr2.1 | CDS | 47599910 | 47600122 | 47599910 | ID=cds.MS.gene85381.t1;Parent=MS.gene85381.t1 |
chr2.1 | exon | 47599340 | 47599681 | 47599340 | ID=MS.gene85381.t1.exon2;Parent=MS.gene85381.t1 |
chr2.1 | CDS | 47599340 | 47599681 | 47599340 | ID=cds.MS.gene85381.t1;Parent=MS.gene85381.t1 |
chr2.1 | exon | 47598318 | 47598656 | 47598318 | ID=MS.gene85381.t1.exon3;Parent=MS.gene85381.t1 |
chr2.1 | CDS | 47598318 | 47598656 | 47598318 | ID=cds.MS.gene85381.t1;Parent=MS.gene85381.t1 |
Gene Sequence |
Protein sequence |