AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060818


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060818.t1 MTR_4g105460 96.183 262 8 1 1 260 1 262 0.0 512
MS.gene060818.t1 MTR_4g105450 79.771 262 49 3 1 260 1 260 1.90e-152 425
MS.gene060818.t1 MTR_4g105460 94.146 205 9 2 1 203 1 204 4.60e-136 382
MS.gene060818.t1 MTR_6g037460 55.556 117 35 3 142 257 2 102 2.22e-30 110
MS.gene060818.t1 MTR_3g098530 33.537 164 105 3 68 229 66 227 5.17e-25 100
MS.gene060818.t1 MTR_8g096180 29.878 164 113 2 67 229 45 207 3.59e-24 97.8
MS.gene060818.t1 MTR_8g096170 29.268 164 114 2 67 229 48 210 1.61e-23 96.3
MS.gene060818.t1 MTR_8g096180 29.885 174 110 3 67 229 45 217 9.20e-23 94.4
MS.gene060818.t1 MTR_3g074050 28.662 157 110 1 75 231 55 209 1.08e-21 92.4
MS.gene060818.t1 MTR_3g074050 28.025 157 110 1 75 231 55 208 5.18e-21 90.5
MS.gene060818.t1 MTR_5g062310 29.341 167 113 3 75 239 52 215 1.93e-19 86.3
MS.gene060818.t1 MTR_3g074050 28.873 142 99 1 90 231 2 141 4.05e-19 84.3
MS.gene060818.t1 MTR_7g087500 29.560 159 110 1 72 230 47 203 2.06e-17 80.5
MS.gene060818.t1 MTR_5g062310 29.032 155 105 3 90 242 2 153 8.97e-17 78.2
MS.gene060818.t1 MTR_1g022185 28.042 189 125 5 75 255 49 234 9.22e-16 75.5
MS.gene060818.t1 MTR_8g077700 27.320 194 126 6 75 258 49 237 2.05e-14 71.6
MS.gene060818.t1 MTR_8g077700 26.923 156 105 3 75 226 77 227 5.49e-14 70.9
MS.gene060818.t1 MTR_1g032580 26.486 185 127 5 51 229 12 193 7.91e-14 69.7
MS.gene060818.t1 MTR_1g032580 27.132 129 88 3 105 229 19 145 3.15e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060818.t1 AT5G63060 65.164 244 80 1 16 259 24 262 5.07e-121 346
MS.gene060818.t1 AT5G63060 70.046 217 65 0 43 259 11 227 8.35e-118 336
MS.gene060818.t1 AT4G08690 27.778 162 115 1 69 230 43 202 2.57e-20 88.6
MS.gene060818.t1 AT4G08690 27.778 162 115 1 69 230 43 202 2.57e-20 88.6
MS.gene060818.t1 AT4G08690 27.778 162 115 1 69 230 43 202 2.57e-20 88.6
MS.gene060818.t1 AT1G01630 25.389 193 131 4 68 258 49 230 1.21e-18 83.2
MS.gene060818.t1 AT4G36640 26.702 191 131 4 75 258 47 235 2.80e-15 74.3
MS.gene060818.t1 AT4G36640 26.702 191 131 4 75 258 47 235 2.80e-15 74.3
MS.gene060818.t1 AT1G75170 27.317 205 139 6 62 258 36 238 4.31e-15 73.9
MS.gene060818.t1 AT1G75170 27.317 205 139 6 62 258 36 238 4.31e-15 73.9
MS.gene060818.t1 AT1G22180 26.994 163 117 1 72 234 49 209 9.02e-15 73.2
MS.gene060818.t1 AT1G22180 26.994 163 117 1 72 234 49 209 9.02e-15 73.2
MS.gene060818.t1 AT1G22180 26.897 145 104 1 90 234 2 144 5.89e-13 67.0
MS.gene060818.t1 AT1G22180 26.897 145 104 1 90 234 2 144 5.89e-13 67.0
MS.gene060818.t1 AT3G22410 26.316 171 123 3 68 236 30 199 2.17e-12 66.6
MS.gene060818.t1 AT1G05370 24.865 185 132 2 45 223 12 195 1.92e-11 63.9

Find 46 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACCACAAACTTGGTTCTA+AGG 0.250088 8.2:+19526046 None:intergenic
TCTTAAATACTTAACGTTCT+TGG 0.272685 8.2:-19524336 MS.gene060818:intron
AACTTTCAATCTCTGAAGTT+TGG 0.282042 8.2:+19523058 None:intergenic
ATATTTGATCTCAGAGGTTT+TGG 0.288687 8.2:-19524374 MS.gene060818:CDS
ATGATGAAGATATGATATTA+TGG 0.341339 8.2:-19525769 MS.gene060818:CDS
GGCTTGGTAAGCTGCCAAAT+TGG 0.365127 8.2:+19524079 None:intergenic
GTTAAAATCATATGCTTCTC+TGG 0.375363 8.2:-19524053 MS.gene060818:intron
AACATCTTTAACAGATTCTT+CGG 0.397936 8.2:+19524887 None:intergenic
TGGATTGCATTTGGAGTTGA+AGG 0.404989 8.2:+19526010 None:intergenic
AAGTACCTTGCGTGAGTCAT+TGG 0.409730 8.2:+19525990 None:intergenic
AGTCTTCCCGTTGGTAGAAA+TGG 0.413730 8.2:-19525797 MS.gene060818:CDS
GCATTGAGTAAGCTTCCAAC+TGG 0.432756 8.2:-19524416 MS.gene060818:CDS
GTTAAAGATGTTGCTCAAAC+CGG 0.436945 8.2:-19524876 MS.gene060818:CDS
ATCCCTTAGAACCAAGTTTG+TGG 0.438222 8.2:-19526049 MS.gene060818:CDS
CAAATTGGTTTAAACACAAA+AGG 0.442517 8.2:+19524094 None:intergenic
TACAATGGCTTTAGTCAACT+TGG 0.445382 8.2:+19525706 None:intergenic
TCCCTACCATTTCTACCAAC+GGG 0.451381 8.2:+19525791 None:intergenic
GTGAGTCATTGGATTGCATT+TGG 0.453042 8.2:+19526001 None:intergenic
ATCTAGAAAGTCATGAATAT+AGG 0.466876 8.2:+19524848 None:intergenic
TTTCAATCTCTGAAGTTTGG+TGG 0.495937 8.2:+19523061 None:intergenic
TGAAGAAAGACGAGGAAGAG+TGG 0.506217 8.2:+19526071 None:intergenic
CATAACTTCTCATCGTCCGC+AGG 0.519330 8.2:+19524458 None:intergenic
ACTGGGAAAGAACAGATACT+TGG 0.523097 8.2:-19524398 MS.gene060818:CDS
GTAGTTAATTCTGGAAGTGA+AGG 0.524383 8.2:-19525843 MS.gene060818:intron
AGTACTTGAGACAGTCGCTT+CGG 0.526049 8.2:+19524130 None:intergenic
CTCTGCAGAGACGGTGAGGA+AGG 0.526947 8.2:-19523107 MS.gene060818:CDS
AGAGCTTCGAACCACAAACT+TGG 0.531030 8.2:+19526038 None:intergenic
GCTGCGACCACCACAAGCAC+AGG 0.533870 8.2:+19524813 None:intergenic
AAGACTGAATTGAATGGCGC+TGG 0.535827 8.2:-19526115 None:intergenic
AACCACAAACTTGGTTCTAA+GGG 0.538296 8.2:+19526047 None:intergenic
AGTATCTGTTCTTTCCCAGT+TGG 0.541349 8.2:+19524401 None:intergenic
ATCCCTACCATTTCTACCAA+CGG 0.547504 8.2:+19525790 None:intergenic
TCCCGTTGGTAGAAATGGTA+GGG 0.573606 8.2:-19525792 MS.gene060818:CDS
CTTGGAATATTTGATCTCAG+AGG 0.594486 8.2:-19524380 MS.gene060818:CDS
TTCCCGTTGGTAGAAATGGT+AGG 0.597951 8.2:-19525793 MS.gene060818:CDS
ACTGTCTCAAGTACTATTTG+CGG 0.613984 8.2:-19524122 MS.gene060818:CDS
ATAACTTCTCATCGTCCGCA+GGG 0.626723 8.2:+19524459 None:intergenic
CATTGAGTAAGCTTCCAACT+GGG 0.632302 8.2:-19524415 MS.gene060818:CDS
CAATGACAGACCTGTGCTTG+TGG 0.634407 8.2:-19524823 MS.gene060818:CDS
GAATACTATAGTCTTCCCGT+TGG 0.641212 8.2:-19525806 MS.gene060818:CDS
TTTGCTCTGCAGAGACGGTG+AGG 0.644052 8.2:-19523111 MS.gene060818:CDS
GCAATCCAATGACTCACGCA+AGG 0.664895 8.2:-19525995 MS.gene060818:intron
TGACAGACCTGTGCTTGTGG+TGG 0.674493 8.2:-19524820 MS.gene060818:CDS
AGAAAGACGAGGAAGAGTGG+TGG 0.678032 8.2:+19526074 None:intergenic
GTCACAGGCACAGGACCCTG+CGG 0.691722 8.2:-19524474 MS.gene060818:intron
CTAAGGGATGAAGAAAGACG+AGG 0.703850 8.2:+19526063 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATATTTATATTGGT+GGG - chr8.2:19525842-19525861 MS.gene060818:CDS 10.0%
!! ACCAATATAAATATAAATTT+GGG + chr8.2:19525842-19525861 None:intergenic 10.0%
!! ATAAAATTTATAAACATAGA+GGG + chr8.2:19524193-19524212 None:intergenic 10.0%
!! GATATAAAGTAATTATAAAA+GGG + chr8.2:19524436-19524455 None:intergenic 10.0%
!! TAATAAAAATCAATATTAAC+AGG + chr8.2:19524116-19524135 None:intergenic 10.0%
!! TGATATAAAGTAATTATAAA+AGG + chr8.2:19524437-19524456 None:intergenic 10.0%
!! AATTTATATTTATATTGGTG+GGG - chr8.2:19525843-19525862 MS.gene060818:intron 15.0%
!! ATGAACATAAATTTATAAGT+GGG - chr8.2:19523898-19523917 MS.gene060818:intron 15.0%
!! ATTAGTATATATTATGCTAA+GGG - chr8.2:19525760-19525779 MS.gene060818:CDS 15.0%
!! CAAATTTATATTTATATTGG+TGG - chr8.2:19525841-19525860 MS.gene060818:CDS 15.0%
!! CACCAATATAAATATAAATT+TGG + chr8.2:19525843-19525862 None:intergenic 15.0%
!! CATAAAATTTATAAACATAG+AGG + chr8.2:19524194-19524213 None:intergenic 15.0%
!! TATAATTAATAATTTCTCCT+GGG - chr8.2:19524578-19524597 MS.gene060818:intron 15.0%
!! TATTAGTATATATTATGCTA+AGG - chr8.2:19525759-19525778 MS.gene060818:CDS 15.0%
!! TCCCAAATTTATATTTATAT+TGG - chr8.2:19525838-19525857 MS.gene060818:CDS 15.0%
!! TTATAATTAATAATTTCTCC+TGG - chr8.2:19524577-19524596 MS.gene060818:intron 15.0%
!!! AAAATTTTTCAATTTTATGC+AGG - chr8.2:19524546-19524565 MS.gene060818:intron 15.0%
!!! TAAGTTGAATAATTGTTATT+GGG + chr8.2:19523231-19523250 None:intergenic 15.0%
!! AAATATACATCTATAAGTGA+GGG - chr8.2:19523702-19523721 MS.gene060818:intron 20.0%
!! AATCAAAGAGAATATAAATG+TGG - chr8.2:19524481-19524500 MS.gene060818:intron 20.0%
!! ATGATGAAGATATGATATTA+TGG - chr8.2:19523396-19523415 MS.gene060818:intron 20.0%
!! ATTTATATTTATATTGGTGG+GGG - chr8.2:19525844-19525863 MS.gene060818:intron 20.0%
!! CATGAACATAAATTTATAAG+TGG - chr8.2:19523897-19523916 MS.gene060818:intron 20.0%
!! CCTGTAAAAGAAAATAAAAA+TGG + chr8.2:19526028-19526047 None:intergenic 20.0%
!! GGACACAAATATTAAAATTT+GGG + chr8.2:19523973-19523992 None:intergenic 20.0%
!! GTCATAGATCTTAAATTTAA+GGG - chr8.2:19524636-19524655 MS.gene060818:intron 20.0%
!! TAAATATACATCTATAAGTG+AGG - chr8.2:19523701-19523720 MS.gene060818:intron 20.0%
!! TATATTCTCTTTGATTGTTT+CGG + chr8.2:19524477-19524496 None:intergenic 20.0%
!! TGAACATAAATTTATAAGTG+GGG - chr8.2:19523899-19523918 MS.gene060818:intron 20.0%
!! TGGACACAAATATTAAAATT+TGG + chr8.2:19523974-19523993 None:intergenic 20.0%
!! TGTCATAGATCTTAAATTTA+AGG - chr8.2:19524635-19524654 MS.gene060818:intron 20.0%
!!! CCATTTTTATTTTCTTTTAC+AGG - chr8.2:19526025-19526044 MS.gene060818:CDS 20.0%
!!! GAGTTCTAACTATAAATATT+TGG + chr8.2:19524874-19524893 None:intergenic 20.0%
!!! GTAAGTTGAATAATTGTTAT+TGG + chr8.2:19523232-19523251 None:intergenic 20.0%
!!! TGATATTTTGTAGTTAATTC+TGG - chr8.2:19523313-19523332 MS.gene060818:intron 20.0%
!!! TTTTCTATATAAGAGAAAAC+AGG - chr8.2:19525163-19525182 MS.gene060818:intron 20.0%
! AAAAAGATTGGAGTGATATA+AGG + chr8.2:19525884-19525903 None:intergenic 25.0%
! AAAAGTCAAACATAACAAGT+AGG + chr8.2:19525273-19525292 None:intergenic 25.0%
! AAACTCTCTTAACATCTAAA+AGG - chr8.2:19523258-19523277 MS.gene060818:intron 25.0%
! AAAGTCAAACATAACAAGTA+GGG + chr8.2:19525272-19525291 None:intergenic 25.0%
! AACATCTTTAACAGATTCTT+CGG + chr8.2:19524281-19524300 None:intergenic 25.0%
! AACTCTCTTAACATCTAAAA+GGG - chr8.2:19523259-19523278 MS.gene060818:intron 25.0%
! ATCTAGAAAGTCATGAATAT+AGG + chr8.2:19524320-19524339 None:intergenic 25.0%
! ATGAAAGTAATCAAATGTGT+CGG + chr8.2:19524017-19524036 None:intergenic 25.0%
! CACATAAATAATTATGTCAC+AGG - chr8.2:19524676-19524695 MS.gene060818:intron 25.0%
! CCATTTCTAATAATGTAGAA+GGG + chr8.2:19524230-19524249 None:intergenic 25.0%
! CTAACATGTTTCTTTACTTT+GGG - chr8.2:19524985-19525004 MS.gene060818:intron 25.0%
! CTATAATTATGATGAGAAGA+AGG + chr8.2:19523486-19523505 None:intergenic 25.0%
! GAACATAAATTTATAAGTGG+GGG - chr8.2:19523900-19523919 MS.gene060818:intron 25.0%
! TATTTATAGTTAGAACTCCA+CGG - chr8.2:19524876-19524895 MS.gene060818:CDS 25.0%
! TCTTAAATACTTAACGTTCT+TGG - chr8.2:19524829-19524848 MS.gene060818:CDS 25.0%
! TTGTTTGATGAAGTTATTCA+TGG - chr8.2:19525354-19525373 MS.gene060818:intron 25.0%
! TTTATATTTATATTGGTGGG+GGG - chr8.2:19525845-19525864 MS.gene060818:intron 25.0%
!! ATGTGTTTTCTTAATTGAGA+AGG - chr8.2:19524727-19524746 MS.gene060818:intron 25.0%
!! ATTTAGAGTTTGCTTTATTG+AGG - chr8.2:19523536-19523555 MS.gene060818:intron 25.0%
!! CAAATTGGTTTAAACACAAA+AGG + chr8.2:19525074-19525093 None:intergenic 25.0%
!! CTTTTGTGTTTAAACCAATT+TGG - chr8.2:19525072-19525091 MS.gene060818:intron 25.0%
!! GAATAATTGTTATTGGGATA+TGG + chr8.2:19523225-19523244 None:intergenic 25.0%
!!! ATCTTATAAGTTGGTATTGT+AGG - chr8.2:19523931-19523950 MS.gene060818:intron 25.0%
!!! GAAGCATATGATTTTAACAT+CGG + chr8.2:19525110-19525129 None:intergenic 25.0%
!!! TCTTATAAGTTGGTATTGTA+GGG - chr8.2:19523932-19523951 MS.gene060818:intron 25.0%
AAAGACTATTCAAGATCCAT+TGG - chr8.2:19523793-19523812 MS.gene060818:intron 30.0%
AAGACTATTCAAGATCCATT+GGG - chr8.2:19523794-19523813 MS.gene060818:intron 30.0%
AGACACTTAACAACAAACAT+TGG + chr8.2:19523660-19523679 None:intergenic 30.0%
AGATATTGAGGTTGTTAAGA+TGG - chr8.2:19525326-19525345 MS.gene060818:intron 30.0%
AGTATATATTATGCTAAGGG+TGG - chr8.2:19525763-19525782 MS.gene060818:CDS 30.0%
ATGAAACCAAAACTTTCTCT+AGG - chr8.2:19524512-19524531 MS.gene060818:intron 30.0%
ATGCCAAAATAGGAGTTATA+AGG + chr8.2:19525932-19525951 None:intergenic 30.0%
ATTACCTTGCTGGAAATAAA+TGG - chr8.2:19524935-19524954 MS.gene060818:intron 30.0%
ATTTATAAACATAGAGGGTC+TGG + chr8.2:19524188-19524207 None:intergenic 30.0%
CAACAATCTTATGCCAAAAT+AGG + chr8.2:19525942-19525961 None:intergenic 30.0%
CAAGTATACTCAAGATATTG+AGG - chr8.2:19525314-19525333 MS.gene060818:intron 30.0%
CAATACCAACTTATAAGATG+AGG + chr8.2:19523930-19523949 None:intergenic 30.0%
CCAAAGTAAAGAAACATGTT+AGG + chr8.2:19524987-19525006 None:intergenic 30.0%
CCCTTCTACATTATTAGAAA+TGG - chr8.2:19524227-19524246 MS.gene060818:intron 30.0%
CCTAACATGTTTCTTTACTT+TGG - chr8.2:19524984-19525003 MS.gene060818:intron 30.0%
CTAACTCAACCAAACAATAT+CGG + chr8.2:19523746-19523765 None:intergenic 30.0%
GCCATTTCTAATAATGTAGA+AGG + chr8.2:19524231-19524250 None:intergenic 30.0%
GGGATATAAAGTTAACTTAG+TGG + chr8.2:19525822-19525841 None:intergenic 30.0%
GTATATATTATGCTAAGGGT+GGG - chr8.2:19525764-19525783 MS.gene060818:CDS 30.0%
GTTAAAATCATATGCTTCTC+TGG - chr8.2:19525112-19525131 MS.gene060818:intron 30.0%
TAACCTTCTACACTTACTTT+AGG + chr8.2:19524388-19524407 None:intergenic 30.0%
TACCATGATAAAGTTTGAGT+TGG + chr8.2:19523771-19523790 None:intergenic 30.0%
TATAACCGATCTCTATGTAT+CGG - chr8.2:19524044-19524063 MS.gene060818:intron 30.0%
TATATATTATGCTAAGGGTG+GGG - chr8.2:19525765-19525784 MS.gene060818:CDS 30.0%
TTTCCTAAAGTAAGTGTAGA+AGG - chr8.2:19524382-19524401 MS.gene060818:CDS 30.0%
! ACCATGATAAAGTTTGAGTT+GGG + chr8.2:19523770-19523789 None:intergenic 30.0%
! ATATTTGATCTCAGAGGTTT+TGG - chr8.2:19524791-19524810 MS.gene060818:intron 30.0%
! GACTTTTGCGTTTTTAATCA+TGG - chr8.2:19525286-19525305 MS.gene060818:intron 30.0%
! TCACCTTATAACTCCTATTT+TGG - chr8.2:19525926-19525945 MS.gene060818:intron 30.0%
!! ATATGATTTTAACATCGGCT+TGG + chr8.2:19525105-19525124 None:intergenic 30.0%
!!! CTATTTTGGCATAAGATTGT+TGG - chr8.2:19525940-19525959 MS.gene060818:intron 30.0%
AAGTGTGGCTTATATATGTC+TGG - chr8.2:19525205-19525224 MS.gene060818:intron 35.0%
AATAATTATGTCACAGGCAC+AGG - chr8.2:19524682-19524701 MS.gene060818:intron 35.0%
AATTCACAAGGTGAATGGTA+TGG + chr8.2:19525468-19525487 None:intergenic 35.0%
ACATACCGATACATAGAGAT+CGG + chr8.2:19524052-19524071 None:intergenic 35.0%
ACATAGAGATCGGTTATACA+AGG + chr8.2:19524042-19524061 None:intergenic 35.0%
ACCCAACTCAAACTTTATCA+TGG - chr8.2:19523766-19523785 MS.gene060818:intron 35.0%
ACTGGGAAATGAGTGAAAAT+TGG - chr8.2:19523566-19523585 MS.gene060818:intron 35.0%
ACTGTCTCAAGTACTATTTG+CGG - chr8.2:19525043-19525062 MS.gene060818:intron 35.0%
ACTTGAACCTCAAATTCACA+AGG + chr8.2:19525480-19525499 None:intergenic 35.0%
ATTCAAATCGAGACGTCATT+GGG - chr8.2:19525382-19525401 MS.gene060818:intron 35.0%
CCAAAACTTTCTCTAGGTAA+AGG - chr8.2:19524518-19524537 MS.gene060818:intron 35.0%
CTTGGAATATTTGATCTCAG+AGG - chr8.2:19524785-19524804 MS.gene060818:intron 35.0%
GAGTTATAAGGTGAATGAGT+TGG + chr8.2:19525920-19525939 None:intergenic 35.0%
GCAATCCTCATCTTATAAGT+TGG - chr8.2:19523922-19523941 MS.gene060818:intron 35.0%
GTTAAAGATGTTGCTCAAAC+CGG - chr8.2:19524289-19524308 MS.gene060818:intron 35.0%
TATTCAAATCGAGACGTCAT+TGG - chr8.2:19525381-19525400 MS.gene060818:intron 35.0%
TGATGAGAAGAAGGATACAA+TGG + chr8.2:19523477-19523496 None:intergenic 35.0%
TGTAGTGTAACTCGTGTTAA+TGG + chr8.2:19523994-19524013 None:intergenic 35.0%
TGTTGTTAAGTGTCTCACTT+TGG - chr8.2:19523665-19523684 MS.gene060818:intron 35.0%
TTAAGATCTATGACACACAC+TGG + chr8.2:19524630-19524649 None:intergenic 35.0%
! ATTTTCAGCACTGTTTGACA+TGG - chr8.2:19525997-19526016 MS.gene060818:CDS 35.0%
! CCTTTACCTAGAGAAAGTTT+TGG + chr8.2:19524521-19524540 None:intergenic 35.0%
! GTAGTTAATTCTGGAAGTGA+AGG - chr8.2:19523322-19523341 MS.gene060818:intron 35.0%
! GTCATGAATATAGGCTTTTC+CGG + chr8.2:19524311-19524330 None:intergenic 35.0%
! TAGAGTTTGCTTTATTGAGG+AGG - chr8.2:19523539-19523558 MS.gene060818:intron 35.0%
! TTGCGTTTTTAATCATGGCA+TGG - chr8.2:19525291-19525310 MS.gene060818:intron 35.0%
!! AACCACAAACTTGGTTCTAA+GGG + chr8.2:19523121-19523140 None:intergenic 35.0%
!! ATAAGGTGAATGAGTTGGTT+TGG + chr8.2:19525915-19525934 None:intergenic 35.0%
!! TAAGGTGAATGAGTTGGTTT+GGG + chr8.2:19525914-19525933 None:intergenic 35.0%
!! TACAATGGCTTTAGTCAACT+TGG + chr8.2:19523462-19523481 None:intergenic 35.0%
!!! GCATCAATTTTTAAGACCGA+AGG - chr8.2:19523629-19523648 MS.gene060818:intron 35.0%
AAGCCACACTTCAGTACAAA+GGG + chr8.2:19525196-19525215 None:intergenic 40.0%
ACAAACATTGGACATGCCTT+CGG + chr8.2:19523648-19523667 None:intergenic 40.0%
ACTGGGAAAGAACAGATACT+TGG - chr8.2:19524767-19524786 MS.gene060818:intron 40.0%
ACTTTCTCTAGGTAAAGGAC+AGG - chr8.2:19524523-19524542 MS.gene060818:intron 40.0%
AGAACCTCCCTATTAAGATC+AGG - chr8.2:19525503-19525522 MS.gene060818:intron 40.0%
AGTATCTGTTCTTTCCCAGT+TGG + chr8.2:19524767-19524786 None:intergenic 40.0%
ATAAACATAGAGGGTCTGGT+TGG + chr8.2:19524184-19524203 None:intergenic 40.0%
ATCCCTACCATTTCTACCAA+CGG + chr8.2:19523378-19523397 None:intergenic 40.0%
ATCCCTTAGAACCAAGTTTG+TGG - chr8.2:19523116-19523135 MS.gene060818:CDS 40.0%
CATGAACTACATTACCTTGC+TGG - chr8.2:19524925-19524944 MS.gene060818:intron 40.0%
CATTGAGTAAGCTTCCAACT+GGG - chr8.2:19524750-19524769 MS.gene060818:intron 40.0%
CCATTCACCTTGTGAATTTG+AGG - chr8.2:19525470-19525489 MS.gene060818:intron 40.0%
CCTCAAATTCACAAGGTGAA+TGG + chr8.2:19525473-19525492 None:intergenic 40.0%
CCTTACAAGCCGATATTGTT+TGG - chr8.2:19523734-19523753 MS.gene060818:intron 40.0%
GAATACTATAGTCTTCCCGT+TGG - chr8.2:19523359-19523378 MS.gene060818:intron 40.0%
GATCTGTCTCACTGAATCAT+AGG - chr8.2:19524081-19524100 MS.gene060818:CDS 40.0%
GGAACCACCTGATCTTAATA+GGG + chr8.2:19525513-19525532 None:intergenic 40.0%
GGAACCATTTATTTCCAGCA+AGG + chr8.2:19524942-19524961 None:intergenic 40.0%
GTGAGTCATTGGATTGCATT+TGG + chr8.2:19523167-19523186 None:intergenic 40.0%
TAAGCCACACTTCAGTACAA+AGG + chr8.2:19525197-19525216 None:intergenic 40.0%
TGGAACCACCTGATCTTAAT+AGG + chr8.2:19525514-19525533 None:intergenic 40.0%
TGGTATTGTAGGGTTGAGTT+AGG - chr8.2:19523942-19523961 MS.gene060818:intron 40.0%
TGGTTCGAGTGAAAGAGTTA+AGG + chr8.2:19525802-19525821 None:intergenic 40.0%
TTATAGTTAGAACTCCACGG+TGG - chr8.2:19524879-19524898 MS.gene060818:CDS 40.0%
TTCAAATCGAGACGTCATTG+GGG - chr8.2:19525383-19525402 MS.gene060818:intron 40.0%
TTGGGGGAGAGAAAAAAGAT+TGG + chr8.2:19525896-19525915 None:intergenic 40.0%
TTTATTGAGGAGGTGGAACT+GGG - chr8.2:19523549-19523568 MS.gene060818:intron 40.0%
! AAGATTTTGCTCTGCAGAGA+CGG - chr8.2:19526049-19526068 MS.gene060818:CDS 40.0%
! AGTTTGCTTTATTGAGGAGG+TGG - chr8.2:19523542-19523561 MS.gene060818:intron 40.0%
! ATGGTTGGCTACCAACATTA+GGG + chr8.2:19525449-19525468 None:intergenic 40.0%
! CACGAGTTCCTCTTTTCTTT+GGG - chr8.2:19525572-19525591 MS.gene060818:intron 40.0%
! GAAATGGCGTCAAGATTTTG+AGG - chr8.2:19524243-19524262 MS.gene060818:intron 40.0%
! TATGGTTGGCTACCAACATT+AGG + chr8.2:19525450-19525469 None:intergenic 40.0%
! TCTAGCTCACATGATGATTC+TGG + chr8.2:19525539-19525558 None:intergenic 40.0%
! TGGATTGCATTTGGAGTTGA+AGG + chr8.2:19523158-19523177 None:intergenic 40.0%
!! AAGGTGAATGAGTTGGTTTG+GGG + chr8.2:19525913-19525932 None:intergenic 40.0%
!! AATATCGGCTTGTAAGGTGA+GGG + chr8.2:19523731-19523750 None:intergenic 40.0%
!! AGTTCCTCTTTTCTTTGGGA+TGG - chr8.2:19525576-19525595 MS.gene060818:intron 40.0%
!! CCAAACAATATCGGCTTGTA+AGG + chr8.2:19523737-19523756 None:intergenic 40.0%
!! GAACCACAAACTTGGTTCTA+AGG + chr8.2:19523122-19523141 None:intergenic 40.0%
AAGTACCTTGCGTGAGTCAT+TGG + chr8.2:19523178-19523197 None:intergenic 45.0%
AATTGTGATGGCCTGATAGC+AGG + chr8.2:19523823-19523842 None:intergenic 45.0%
ACACTCCAGATGTCCATTTC+TGG - chr8.2:19523848-19523867 MS.gene060818:intron 45.0%
ACCACCTGATCTTAATAGGG+AGG + chr8.2:19525510-19525529 None:intergenic 45.0%
ACCTCCCTATTAAGATCAGG+TGG - chr8.2:19525506-19525525 MS.gene060818:intron 45.0%
AGAGCTTCGAACCACAAACT+TGG + chr8.2:19523130-19523149 None:intergenic 45.0%
AGTACTTGAGACAGTCGCTT+CGG + chr8.2:19525038-19525057 None:intergenic 45.0%
ATAACTTCTCATCGTCCGCA+GGG + chr8.2:19524709-19524728 None:intergenic 45.0%
CACAAGGTGAATGGTATGGT+TGG + chr8.2:19525464-19525483 None:intergenic 45.0%
CACTCCAGATGTCCATTTCT+GGG - chr8.2:19523849-19523868 MS.gene060818:intron 45.0%
CATTGGGGGTAGAGAGAAAT+AGG - chr8.2:19525398-19525417 MS.gene060818:intron 45.0%
CCAAAGAAAAGAGGAACTCG+TGG + chr8.2:19525574-19525593 None:intergenic 45.0%
CTAAGGGATGAAGAAAGACG+AGG + chr8.2:19523105-19523124 None:intergenic 45.0%
CTCACATGATGATTCTGGCA+TGG + chr8.2:19525534-19525553 None:intergenic 45.0%
CTTCCCTTTGTACTGAAGTG+TGG - chr8.2:19525190-19525209 MS.gene060818:intron 45.0%
CTTGCCATCCCAAAGAAAAG+AGG + chr8.2:19525583-19525602 None:intergenic 45.0%
CTTTATTGAGGAGGTGGAAC+TGG - chr8.2:19523548-19523567 MS.gene060818:intron 45.0%
GAAAAGAGGAACTCGTGGAT+AGG + chr8.2:19525569-19525588 None:intergenic 45.0%
GAAATTAGGACTGGAACAGG+TGG + chr8.2:19524150-19524169 None:intergenic 45.0%
GATCTATGACACACACTGGT+AGG + chr8.2:19524626-19524645 None:intergenic 45.0%
GCATTGAGTAAGCTTCCAAC+TGG - chr8.2:19524749-19524768 MS.gene060818:intron 45.0%
GCTATCAGGCCATCACAATT+GGG - chr8.2:19523823-19523842 MS.gene060818:intron 45.0%
GTGGAAATTAGGACTGGAAC+AGG + chr8.2:19524153-19524172 None:intergenic 45.0%
TCAAATCGAGACGTCATTGG+GGG - chr8.2:19525384-19525403 MS.gene060818:intron 45.0%
TCCCTACCATTTCTACCAAC+GGG + chr8.2:19523377-19523396 None:intergenic 45.0%
TGAAGAAAGACGAGGAAGAG+TGG + chr8.2:19523097-19523116 None:intergenic 45.0%
TGCTATCAGGCCATCACAAT+TGG - chr8.2:19523822-19523841 MS.gene060818:intron 45.0%
TGGTTGAGCAGGTGGAAATT+AGG + chr8.2:19524164-19524183 None:intergenic 45.0%
TGTTGGGGTAACCCTAATGT+TGG - chr8.2:19525435-19525454 MS.gene060818:intron 45.0%
! AGAAATGGACATCTGGAGTG+TGG + chr8.2:19523849-19523868 None:intergenic 45.0%
! AGTCTTCCCGTTGGTAGAAA+TGG - chr8.2:19523368-19523387 MS.gene060818:intron 45.0%
! ATGTCCATTTCTGGGAGTGA+AGG - chr8.2:19523857-19523876 MS.gene060818:intron 45.0%
! CCACGAGTTCCTCTTTTCTT+TGG - chr8.2:19525571-19525590 MS.gene060818:intron 45.0%
! GGGCGAGAGTGTACATAATT+TGG + chr8.2:19525252-19525271 None:intergenic 45.0%
! TCCCGTTGGTAGAAATGGTA+GGG - chr8.2:19523373-19523392 MS.gene060818:intron 45.0%
! TGTCCATTTCTGGGAGTGAA+GGG - chr8.2:19523858-19523877 MS.gene060818:intron 45.0%
! TGTTACTAATCAGAGTGCCC+AGG + chr8.2:19524598-19524617 None:intergenic 45.0%
! TTCCCGTTGGTAGAAATGGT+AGG - chr8.2:19523372-19523391 MS.gene060818:intron 45.0%
!! AGGTGAATGAGTTGGTTTGG+GGG + chr8.2:19525912-19525931 None:intergenic 45.0%
!! CAATATCGGCTTGTAAGGTG+AGG + chr8.2:19523732-19523751 None:intergenic 45.0%
AGAAAGACGAGGAAGAGTGG+TGG + chr8.2:19523094-19523113 None:intergenic 50.0%
AGGAGGTAACTGCTCACTGT+TGG - chr8.2:19525418-19525437 MS.gene060818:intron 50.0%
CAAGTTAAGCAATGCCACCG+TGG + chr8.2:19524896-19524915 None:intergenic 50.0%
CAATGACAGACCTGTGCTTG+TGG - chr8.2:19524342-19524361 MS.gene060818:CDS 50.0%
CACTCCCAGAAATGGACATC+TGG + chr8.2:19523856-19523875 None:intergenic 50.0%
CATAACTTCTCATCGTCCGC+AGG + chr8.2:19524710-19524729 None:intergenic 50.0%
GAGCAGGTGGAAATTAGGAC+TGG + chr8.2:19524159-19524178 None:intergenic 50.0%
GAGGTAACTGCTCACTGTTG+GGG - chr8.2:19525420-19525439 MS.gene060818:intron 50.0%
GCAATCCAATGACTCACGCA+AGG - chr8.2:19523170-19523189 MS.gene060818:intron 50.0%
GGAGGTAACTGCTCACTGTT+GGG - chr8.2:19525419-19525438 MS.gene060818:intron 50.0%
TGGGGGTAGAGAGAAATAGG+AGG - chr8.2:19525401-19525420 MS.gene060818:intron 50.0%
TTCATGACGCTGTCAGCTCT+TGG + chr8.2:19524963-19524982 None:intergenic 50.0%
! GGCTTGGTAAGCTGCCAAAT+TGG + chr8.2:19525089-19525108 None:intergenic 50.0%
! GTCCATTTCTGGGAGTGAAG+GGG - chr8.2:19523859-19523878 MS.gene060818:intron 50.0%
CACCCCTTCACTCCCAGAAA+TGG + chr8.2:19523864-19523883 None:intergenic 55.0%
GGAGTGTGGCCCAATTGTGA+TGG + chr8.2:19523835-19523854 None:intergenic 55.0%
TGACAGACCTGTGCTTGTGG+TGG - chr8.2:19524345-19524364 MS.gene060818:CDS 55.0%
TGTGATGGCCTGATAGCAGG+TGG + chr8.2:19523820-19523839 None:intergenic 55.0%
TTTGCTCTGCAGAGACGGTG+AGG - chr8.2:19526054-19526073 MS.gene060818:CDS 55.0%
! TGAAGGGGTGTGTCGAGAGT+AGG - chr8.2:19523874-19523893 MS.gene060818:intron 55.0%
CCATTGGGCCACCTGCTATC+AGG - chr8.2:19523809-19523828 MS.gene060818:intron 60.0%
CCTGATAGCAGGTGGCCCAA+TGG + chr8.2:19523812-19523831 None:intergenic 60.0%
CTCTGCAGAGACGGTGAGGA+AGG - chr8.2:19526058-19526077 MS.gene060818:CDS 60.0%
! GAGGGTCTGGTTGGTTGAGC+AGG + chr8.2:19524175-19524194 None:intergenic 60.0%
! GGTCTGGTTGGTTGAGCAGG+TGG + chr8.2:19524172-19524191 None:intergenic 60.0%
GCTGCGACCACCACAAGCAC+AGG + chr8.2:19524355-19524374 None:intergenic 65.0%
GTCACAGGCACAGGACCCTG+CGG - chr8.2:19524691-19524710 MS.gene060818:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 19523063 19526124 19523063 ID=MS.gene060818
chr8.2 mRNA 19523063 19526124 19523063 ID=MS.gene060818.t1;Parent=MS.gene060818
chr8.2 exon 19525996 19526124 19525996 ID=MS.gene060818.t1.exon1;Parent=MS.gene060818.t1
chr8.2 CDS 19525996 19526124 19525996 ID=cds.MS.gene060818.t1;Parent=MS.gene060818.t1
chr8.2 exon 19525709 19525861 19525709 ID=MS.gene060818.t1.exon2;Parent=MS.gene060818.t1
chr8.2 CDS 19525709 19525861 19525709 ID=cds.MS.gene060818.t1;Parent=MS.gene060818.t1
chr8.2 exon 19524797 19524943 19524797 ID=MS.gene060818.t1.exon3;Parent=MS.gene060818.t1
chr8.2 CDS 19524797 19524943 19524797 ID=cds.MS.gene060818.t1;Parent=MS.gene060818.t1
chr8.2 exon 19524337 19524489 19524337 ID=MS.gene060818.t1.exon4;Parent=MS.gene060818.t1
chr8.2 CDS 19524337 19524489 19524337 ID=cds.MS.gene060818.t1;Parent=MS.gene060818.t1
chr8.2 exon 19524054 19524176 19524054 ID=MS.gene060818.t1.exon5;Parent=MS.gene060818.t1
chr8.2 CDS 19524054 19524176 19524054 ID=cds.MS.gene060818.t1;Parent=MS.gene060818.t1
chr8.2 exon 19523063 19523140 19523063 ID=MS.gene060818.t1.exon6;Parent=MS.gene060818.t1
chr8.2 CDS 19523063 19523140 19523063 ID=cds.MS.gene060818.t1;Parent=MS.gene060818.t1
Gene Sequence

>MS.gene060818

ATGGCGCTGGTTCGTGTGTTCTCAACAGCCACCACTCTTCCTCGTCTTTCTTCATCCCTTAGAACCAAGTTTGTGGTTCGAAGCTCTTCTAACCTTCAACTCCAAATGCAATCCAATGACTCACGCAAGGTACTTCTTTCTTTCTTTCACTCGTCTTTTCCATATCCCAATAACAATTATTCAACTTACAGAATGAAACTCTCTTAACATCTAAAAGGGTATATCAAAATGTGATTATTTTTTTGTTTGTTGATATTTTGTAGTTAATTCTGGAAGTGAAGGACAAGCTTGAAAAAGAATACTATAGTCTTCCCGTTGGTAGAAATGGTAGGGATGATGAAGATATGATATTATGGTTTCTGAAAGATCGCAAATTTGATGTTGAAGAAGCTGTTTCCAAGTTGACTAAAGCCATTGTATCCTTCTTCTCATCATAATTATAGCATCATTAATTTTCAATTTGTTTATTAGTAATTTAGAGTTTGCTTTATTGAGGAGGTGGAACTGGGAAATGAGTGAAAATTGGTGTATTTTAGTTTCTGCTTTCATATGTTATCATCTATGTAGCATCAATTTTTAAGACCGAAGGCATGTCCAATGTTTGTTGTTAAGTGTCTCACTTTGGATGAGATGAAGACTAAATATACATCTATAAGTGAGGGCAACCCTCACCTTACAAGCCGATATTGTTTGGTTGAGTTAGACCCAACTCAAACTTTATCATGGTATCAAAGACTATTCAAGATCCATTGGGCCACCTGCTATCAGGCCATCACAATTGGGCCACACTCCAGATGTCCATTTCTGGGAGTGAAGGGGTGTGTCGAGAGTAGGCATGAACATAAATTTATAAGTGGGGGCAATCCTCATCTTATAAGTTGGTATTGTAGGGTTGAGTTAGGCTCAACCCAAATTTTAATATTTGTGTCCATTAACACGAGTTACACTACACCGACACATTTGATTACTTTCATTTCCTTGTATAACCGATCTCTATGTATCGGTATGTGTCTTGTTTGATCTGTCTCACTGAATCATAGGTATCATACTCCTGTTAATATTGATTTTTATTATTCAAAATTTTCCACCTGTTCCAGTCCTAATTTCCACCTGCTCAACCAACCAGACCCTCTATGTTTATAAATTTTATGTACTTGTTACTTTCCCTTCTACATTATTAGAAATGGCGTCAAGATTTTGAGGTGTCTAAATTGACCGAAGAATCTGTTAAAGATGTTGCTCAAACCGGAAAAGCCTATATTCATGACTTTCTAGATATCAATGACAGACCTGTGCTTGTGGTGGTCGCAGCGAAGCATTTTCCTAAAGTAAGTGTAGAAGGTTATAAGTTGTAGTAGTTAATATTTCAACCCTTTTATAATTACTTTATATCATTCATTTTTTATATTCTCCGAAACAATCAAAGAGAATATAAATGTGGTTAAATGAATGAAACCAAAACTTTCTCTAGGTAAAGGACAGGAAAATTTTTCAATTTTATGCAGGCTAATTATTTATAATTAATAATTTCTCCTGGGCACTCTGATTAGTAACAACAAACCTACCAGTGTGTGTCATAGATCTTAAATTTAAGGGATGAGATTGCTTAACTTCACATAAATAATTATGTCACAGGCACAGGACCCTGCGGACGATGAGAAGTTATGTGTTTTCTTAATTGAGAAGGCATTGAGTAAGCTTCCAACTGGGAAAGAACAGATACTTGGAATATTTGATCTCAGAGGTTTTGGTACAGAAAATGCTGATCTTAAATACTTAACGTTCTTGGTATGTTTTTTAAATATCTGCCAAATATTTATAGTTAGAACTCCACGGTGGCATTGCTTAACTTGATTTGTGTTCATGAACTACATTACCTTGCTGGAAATAAATGGTTCCAAGAGCTGACAGCGTCATGAAACCTAACATGTTTCTTTACTTTGGGCAGTTTAATGTGTTCTATTATTACTATCCGAAGCGACTGTCTCAAGTACTATTTGCGGATGCTCCTTTTGTGTTTAAACCAATTTGGCAGCTTACCAAGCCGATGTTAAAATCATATGCTTCTCTGGTAAGTGTTACAGATTTTGAATGTTCATGTTTTCTATATAAGAGAAAACAGGTATTCTTCCCTTTGTACTGAAGTGTGGCTTATATATGTCTGGATCATTTTTTTATCTTTCTCACCAAATTATGTACACTCTCGCCCTACTTGTTATGTTTGACTTTTGCGTTTTTAATCATGGCATGGCAAGTATACTCAAGATATTGAGGTTGTTAAGATGGTTTTATTGTTTGATGAAGTTATTCATGGTCAATATTCAAATCGAGACGTCATTGGGGGTAGAGAGAAATAGGAGGTAACTGCTCACTGTTGGGGTAACCCTAATGTTGGTAGCCAACCATACCATTCACCTTGTGAATTTGAGGTTCAAGTCTTAGAACCTCCCTATTAAGATCAGGTGGTTCCATGCCAGAATCATCATGTGAGCTAGACAATGATCCTATCCACGAGTTCCTCTTTTCTTTGGGATGGCAAGCGTATTTATAATTTTTAATTGTGATCAGTGAGTCAATTAGAAGAATATCTTAGAGTAGTATTACTGCATTAGACATAACTTTTTTATTTAACAGAAAATGTCATACATTAGACATAGTAATACGTTGTACATAATTTTTGAAACGACAAATGTCAGTATTAGTATATATTATGCTAAGGGTGGGGATCGTACAGCTCCTTAACTCTTTCACTCGAACCACTAAGTTAACTTTATATCCCAAATTTATATTTATATTGGTGGGGGGAGTTGAACACTGACCTTATATCACTCCAATCTTTTTTCTCTCCCCCAAACCAACTCATTCACCTTATAACTCCTATTTTGGCATAAGATTGTTGGCTCACATTTTGAAGTGAAACAAAATCAAAAGATTATTTTCAGCACTGTTTGACATGGCTGCTCCATTTTTATTTTCTTTTACAGGTAAGATTTTGCTCTGCAGAGACGGTGAGGAAGGAATATTTTACAAATGAAACTTTGCCACCAAACTTCAGAGATTGA

Protein sequence

>MS.gene060818.t1

MALVRVFSTATTLPRLSSSLRTKFVVRSSSNLQLQMQSNDSRKLILEVKDKLEKEYYSLPVGRNGRDDEDMILWFLKDRKFDVEEAVSKLTKAIKWRQDFEVSKLTEESVKDVAQTGKAYIHDFLDINDRPVLVVVAAKHFPKAQDPADDEKLCVFLIEKALSKLPTGKEQILGIFDLRGFGTENADLKYLTFLFNVFYYYYPKRLSQVLFADAPFVFKPIWQLTKPMLKSYASLVRFCSAETVRKEYFTNETLPPNFRD