Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85450.t1 | XP_003624062.1 | 95.5 | 1057 | 46 | 2 | 1 | 1055 | 1 | 1057 | 0.00E+00 | 1813.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85450.t1 | G7L6M3 | 95.5 | 1057 | 46 | 2 | 1 | 1055 | 1 | 1057 | 0.0e+00 | 1813.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051662 | MS.gene85450 | -0.811191 | 7.92E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene85450 | 0.824148 | 9.44E-54 | -1.69E-46 |
| MS.gene055815 | MS.gene85450 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene055816 | MS.gene85450 | 0.825919 | 3.60E-54 | -1.69E-46 |
| MS.gene058661 | MS.gene85450 | 0.8577 | 1.36E-62 | -1.69E-46 |
| MS.gene059033 | MS.gene85450 | 0.806171 | 9.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85450.t1 | MTR_7g078820 | 98.297 | 1057 | 16 | 2 | 1 | 1055 | 1 | 1057 | 0.0 | 2111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85450.t1 | AT4G01290 | 41.457 | 714 | 365 | 21 | 1 | 690 | 2 | 686 | 3.18e-125 | 407 |
| MS.gene85450.t1 | AT4G01290 | 36.644 | 292 | 142 | 16 | 782 | 1055 | 724 | 990 | 4.71e-25 | 113 |
| MS.gene85450.t1 | AT4G01290 | 40.140 | 715 | 374 | 22 | 1 | 690 | 2 | 687 | 1.21e-123 | 402 |
| MS.gene85450.t1 | AT4G01290 | 36.860 | 293 | 140 | 17 | 782 | 1055 | 725 | 991 | 4.40e-25 | 113 |
Find 280 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGGGGAACCCATGGAAAA+TGG | 0.159786 | 7.2:-26920922 | MS.gene85450:CDS |
| CTCTTCAAATCTATTTGATT+TGG | 0.179124 | 7.2:+26914870 | None:intergenic |
| CTATCACAAGTTGGTGAAAA+TGG | 0.182902 | 7.2:-26915366 | MS.gene85450:CDS |
| ATAATTGAGCTAACCTTATA+TGG | 0.226948 | 7.2:+26920462 | None:intergenic |
| TCCAACCAACCGTCAATTTC+CGG | 0.228998 | 7.2:-26914371 | MS.gene85450:CDS |
| GATATCCCCAACATTAAAAT+TGG | 0.243593 | 7.2:-26916240 | MS.gene85450:CDS |
| AAATGGGATTCTCGCTCTTC+TGG | 0.244314 | 7.2:-26920905 | MS.gene85450:CDS |
| CATGAGCTAGACTTGGGTTT+TGG | 0.258332 | 7.2:-26913632 | MS.gene85450:CDS |
| ATGAGTGTTTGAGGATATTT+TGG | 0.264602 | 7.2:+26917601 | None:intergenic |
| CAACTTAATGCTGAAGTAAA+AGG | 0.265763 | 7.2:-26916144 | MS.gene85450:CDS |
| GAAATCAAGTTATCTTCTTC+AGG | 0.268072 | 7.2:+26914742 | None:intergenic |
| CCTGAGCATGATGGACTTCT+AGG | 0.280439 | 7.2:-26920600 | MS.gene85450:CDS |
| AGAGGTTCAATTGGATCTTC+AGG | 0.285185 | 7.2:-26915018 | MS.gene85450:CDS |
| TCTTCAAATCTATTTGATTT+GGG | 0.286002 | 7.2:+26914871 | None:intergenic |
| CTCGTGGTCCTTATGATATA+AGG | 0.286943 | 7.2:-26914561 | MS.gene85450:CDS |
| CGAATTTCCAACAGATAAAA+AGG | 0.287503 | 7.2:+26914699 | None:intergenic |
| TCTTTCAATGATGAAACTTT+TGG | 0.293053 | 7.2:-26920236 | MS.gene85450:CDS |
| AAAAGCCTCTGAAGTGCTTC+TGG | 0.301885 | 7.2:+26913722 | None:intergenic |
| TCTCAATCGGAATGGGATTC+AGG | 0.308473 | 7.2:-26920860 | MS.gene85450:intron |
| TCATCCTCCTTGCCCATATA+AGG | 0.309912 | 7.2:-26920475 | MS.gene85450:intron |
| AATACCAGCCATCGGATTAC+TGG | 0.312749 | 7.2:+26914186 | None:intergenic |
| TTACCTTGCAATTGCATTCC+AGG | 0.315595 | 7.2:+26914097 | None:intergenic |
| ACAGATTCTGGAAAACGTTT+TGG | 0.322097 | 7.2:-26920651 | MS.gene85450:intron |
| CAACCAAGCAGTGTTGTAAC+TGG | 0.326835 | 7.2:-26914322 | MS.gene85450:CDS |
| AAGGGCGGGCTGCAGGTTTC+CGG | 0.329800 | 7.2:-26915570 | MS.gene85450:CDS |
| TAATTAGCTCCTGCGGTTGC+TGG | 0.342802 | 7.2:-26913758 | MS.gene85450:intron |
| GAAGAGCAGTGGTTAGGTTA+TGG | 0.343168 | 7.2:-26914853 | MS.gene85450:CDS |
| AATGAGCAAACTTTGAAGAT+TGG | 0.360892 | 7.2:+26915788 | None:intergenic |
| AACATTGAGCTTGCAAAACC+TGG | 0.363542 | 7.2:+26917641 | None:intergenic |
| TCAAAGCCAATCCATCCTTC+AGG | 0.372259 | 7.2:-26913677 | MS.gene85450:CDS |
| CGGTGAAAAGGGCGGGCTGC+AGG | 0.378394 | 7.2:-26915577 | MS.gene85450:CDS |
| TGGTCCAATGTTGAATCAAC+TGG | 0.378775 | 7.2:-26914464 | MS.gene85450:CDS |
| GCATCGGCGTTTGCTTCCTC+TGG | 0.379318 | 7.2:+26915135 | None:intergenic |
| TTATTGACGATGATTCAAAA+AGG | 0.380479 | 7.2:-26917778 | MS.gene85450:CDS |
| AGACCACCTGGGTATGCGCC+TGG | 0.382875 | 7.2:-26920561 | MS.gene85450:CDS |
| GGCGCATACCCAGGTGGTCT+TGG | 0.384351 | 7.2:+26920564 | None:intergenic |
| GGGAAGCCTTGCATTGGGTT+TGG | 0.387762 | 7.2:+26914154 | None:intergenic |
| CCAACCAACCGTCAATTTCC+GGG | 0.388733 | 7.2:-26914370 | MS.gene85450:CDS |
| TCTGTTCAAAGAGGTTCAAT+TGG | 0.389156 | 7.2:-26915027 | MS.gene85450:CDS |
| CTAAGGCTAGTGGTTTCAAT+AGG | 0.390299 | 7.2:-26914783 | MS.gene85450:CDS |
| AATCTTCAAAGTTTGCTCAT+TGG | 0.391747 | 7.2:-26915786 | MS.gene85450:CDS |
| CTCTGCTGCATGAGTGTTTG+AGG | 0.394869 | 7.2:+26917592 | None:intergenic |
| ACTTATTGTTGGCGGTGAAA+AGG | 0.395533 | 7.2:-26915589 | MS.gene85450:CDS |
| AAAGACTTTGGTGCAAAGAC+TGG | 0.396711 | 7.2:-26915315 | MS.gene85450:CDS |
| CTCAATGTTGGAAAGGAATA+CGG | 0.404826 | 7.2:-26917627 | MS.gene85450:CDS |
| GTCTGCTCTTTCAGAAGCCT+TGG | 0.406626 | 7.2:-26916193 | MS.gene85450:CDS |
| GGCCAGCAGCATCCTAGTTT+AGG | 0.407883 | 7.2:-26914124 | MS.gene85450:CDS |
| TTGGATCAAGCAACTGATAG+TGG | 0.411182 | 7.2:-26921461 | MS.gene85450:CDS |
| GGATGCTGCTGGCCACCAAA+TGG | 0.413397 | 7.2:+26914133 | None:intergenic |
| GGGCACAGCCAGGGGATTCA+TGG | 0.419832 | 7.2:-26913656 | MS.gene85450:CDS |
| AGGATCCTTACATAAAGATA+TGG | 0.420659 | 7.2:-26915235 | MS.gene85450:CDS |
| CCAATGCAAGGCTTCCCATT+TGG | 0.421719 | 7.2:-26914148 | MS.gene85450:CDS |
| TGTTGAGATTACTAGAAAAC+TGG | 0.421998 | 7.2:-26914647 | MS.gene85450:CDS |
| CGCTTGAAGGACAAAGACTT+TGG | 0.422648 | 7.2:-26915327 | MS.gene85450:CDS |
| GCTCATTGGTTTACTGAAGA+AGG | 0.422822 | 7.2:-26915772 | MS.gene85450:intron |
| TTTGTTATCGTTTAGTGGAT+TGG | 0.423321 | 7.2:-26921294 | MS.gene85450:CDS |
| TTGGAGTTGTGAAGGTCGGT+GGG | 0.430824 | 7.2:+26914507 | None:intergenic |
| TACGGCTCATTAGATCGATT+TGG | 0.431926 | 7.2:+26920498 | None:intergenic |
| GACTTGCTCTCACTTATTGT+TGG | 0.432283 | 7.2:-26915600 | MS.gene85450:CDS |
| GGATTACAATAAGTAAAATT+CGG | 0.434881 | 7.2:+26915522 | None:intergenic |
| TTCATATCCCCTCTGGTTGG+AGG | 0.439074 | 7.2:+26920953 | None:intergenic |
| CTTATTGTTGGCGGTGAAAA+GGG | 0.439662 | 7.2:-26915588 | MS.gene85450:CDS |
| TGAACCTCTTTGAACAGAAA+GGG | 0.440701 | 7.2:+26915032 | None:intergenic |
| GGGGCATTGTGGCACCCCTT+GGG | 0.441303 | 7.2:+26914215 | None:intergenic |
| GGAGGACGAAGCATATTTCC+CGG | 0.442904 | 7.2:+26914352 | None:intergenic |
| CCTGGCTGTGCCCTGAAGGA+TGG | 0.446297 | 7.2:+26913666 | None:intergenic |
| TTGTCATTAGCTCGAAACTT+AGG | 0.447857 | 7.2:+26920528 | None:intergenic |
| CAGGCTGGGCAACTTGTGCC+TGG | 0.448280 | 7.2:-26916426 | MS.gene85450:CDS |
| ATCATCTCAGCAGCGCTTGA+AGG | 0.449011 | 7.2:-26915340 | MS.gene85450:CDS |
| TCGTGGTCCTTATGATATAA+GGG | 0.450375 | 7.2:-26914560 | MS.gene85450:CDS |
| TGTCTCATCTGCTTTAGTAT+CGG | 0.450797 | 7.2:+26915828 | None:intergenic |
| GTCTCATCTGCTTTAGTATC+GGG | 0.453861 | 7.2:+26915829 | None:intergenic |
| AAGAACTGCTTGTAAAATCT+CGG | 0.454918 | 7.2:+26915416 | None:intergenic |
| GGGAAGTCCACTTCAATTGA+TGG | 0.455011 | 7.2:-26915294 | MS.gene85450:CDS |
| GTTGGAGTTGTGAAGGTCGG+TGG | 0.456717 | 7.2:+26914506 | None:intergenic |
| GCGGGGAACCCATGGAAAAT+GGG | 0.458861 | 7.2:-26920921 | MS.gene85450:CDS |
| GCATATTTCCCGGAAATTGA+CGG | 0.459444 | 7.2:+26914362 | None:intergenic |
| CAAATGGGAAGCCTTGCATT+GGG | 0.459980 | 7.2:+26914149 | None:intergenic |
| CTTCTTTCTTTGTTACAGAA+AGG | 0.460019 | 7.2:-26915255 | MS.gene85450:CDS |
| ACACTGCTTGGTTGATGAAA+AGG | 0.461348 | 7.2:+26914331 | None:intergenic |
| TAGTTCCATATCTTTATGTA+AGG | 0.463486 | 7.2:+26915230 | None:intergenic |
| GGTTGATGAGTTTGTTCTGA+TGG | 0.463518 | 7.2:+26914892 | None:intergenic |
| ACATGCTCACCAGCGGGTTC+AGG | 0.464434 | 7.2:+26915501 | None:intergenic |
| CATCCTAGTTTAGGTGGCCC+TGG | 0.466019 | 7.2:-26914115 | MS.gene85450:CDS |
| AGAACTGCTTGTAAAATCTC+GGG | 0.466853 | 7.2:+26915417 | None:intergenic |
| CCAAATGGGAAGCCTTGCAT+TGG | 0.468577 | 7.2:+26914148 | None:intergenic |
| TCGTTATCCACTTGCTTGGT+TGG | 0.468654 | 7.2:+26916345 | None:intergenic |
| AGATTTGAAGAGCAGTGGTT+AGG | 0.471742 | 7.2:-26914859 | MS.gene85450:CDS |
| AAACGAAGATCAGAGCTTGT+TGG | 0.471779 | 7.2:-26921480 | MS.gene85450:CDS |
| ATAAGTGAGAGCAAGTCATT+TGG | 0.474963 | 7.2:+26915606 | None:intergenic |
| TCATATCCCCTCTGGTTGGA+GGG | 0.477019 | 7.2:+26920954 | None:intergenic |
| TTTCCTCATCAATTCGAAAG+AGG | 0.477961 | 7.2:+26917865 | None:intergenic |
| TAACAAAGAAAGAAGGTGTT+CGG | 0.478062 | 7.2:+26915263 | None:intergenic |
| TGGAGTGTACAAACGAGGAC+AGG | 0.479619 | 7.2:-26920208 | MS.gene85450:CDS |
| CCATCCTTCAGGGCACAGCC+AGG | 0.480710 | 7.2:-26913666 | MS.gene85450:CDS |
| CCAGGTTCCCTTATATCATA+AGG | 0.480967 | 7.2:+26914553 | None:intergenic |
| CTGTGCCCTGAAGGATGGAT+TGG | 0.481159 | 7.2:+26913671 | None:intergenic |
| CAGCGATTCTCAATCGGAAT+GGG | 0.483746 | 7.2:-26920867 | MS.gene85450:CDS |
| CCCGGAAATTGACGGTTGGT+TGG | 0.486337 | 7.2:+26914370 | None:intergenic |
| TATGAAGCATGCGGCTTCTG+AGG | 0.487883 | 7.2:-26914413 | MS.gene85450:CDS |
| TTGAACCTCTTTGAACAGAA+AGG | 0.488275 | 7.2:+26915031 | None:intergenic |
| GGAGTTGTGAAGGTCGGTGG+GGG | 0.491483 | 7.2:+26914509 | None:intergenic |
| GATGCTGCTGGCCACCAAAT+GGG | 0.492530 | 7.2:+26914134 | None:intergenic |
| GAGGTTCAATTGGATCTTCA+GGG | 0.494178 | 7.2:-26915017 | MS.gene85450:CDS |
| AAATCAAGTTATCTTCTTCA+GGG | 0.497846 | 7.2:+26914743 | None:intergenic |
| ACTGTCATCTGATGCTTCCA+AGG | 0.499157 | 7.2:+26916176 | None:intergenic |
| AAAGTTATTCATATCCCCTC+TGG | 0.499206 | 7.2:+26920946 | None:intergenic |
| CTATTGAAACCACTAGCCTT+AGG | 0.500651 | 7.2:+26914784 | None:intergenic |
| ATCTATTACGAGGTTTCCCA+AGG | 0.502668 | 7.2:-26914231 | MS.gene85450:CDS |
| AGTTTCCAAGTGGGTTTGAT+CGG | 0.504136 | 7.2:-26921259 | MS.gene85450:CDS |
| ATGAAGGAGCTGCAATCAGT+TGG | 0.505416 | 7.2:-26915060 | MS.gene85450:CDS |
| CTGTTTAGTGAAAGCTCGGC+AGG | 0.505573 | 7.2:+26914934 | None:intergenic |
| TTGATCGTTATCCACTTGCT+TGG | 0.506155 | 7.2:+26916341 | None:intergenic |
| CCTCATCAGCTGAATCACTT+TGG | 0.507083 | 7.2:-26914484 | MS.gene85450:CDS |
| TAAAATTCGGTGCAACGTGA+TGG | 0.507927 | 7.2:+26915535 | None:intergenic |
| CCTTATGATATAAGGGAACC+TGG | 0.508824 | 7.2:-26914553 | MS.gene85450:CDS |
| ATGCAAGGCTTCCCATTTGG+TGG | 0.509725 | 7.2:-26914145 | MS.gene85450:CDS |
| AGGATAGACTCGGAACTCTC+AGG | 0.509726 | 7.2:+26916093 | None:intergenic |
| GAAGATAACTTGATTTCTGC+CGG | 0.511057 | 7.2:-26914736 | MS.gene85450:CDS |
| AACCCAGTTACAACACTGCT+TGG | 0.512369 | 7.2:+26914319 | None:intergenic |
| GACCACCTGGGTATGCGCCT+GGG | 0.514165 | 7.2:-26920560 | MS.gene85450:CDS |
| CCATCGGATTACTGGGATGA+GGG | 0.514306 | 7.2:+26914194 | None:intergenic |
| CAGAGACAGCGATTCTCAAT+CGG | 0.516768 | 7.2:-26920873 | MS.gene85450:CDS |
| TTAGCTCCTGCGGTTGCTGG+TGG | 0.516807 | 7.2:-26913755 | MS.gene85450:intron |
| TCATGGTCATGAGCTAGACT+TGG | 0.517201 | 7.2:-26913639 | MS.gene85450:CDS |
| ATCCCCTGGCTGTGCCCTGA+AGG | 0.517737 | 7.2:+26913662 | None:intergenic |
| TACCTTGCAATTGCATTCCA+GGG | 0.518267 | 7.2:+26914098 | None:intergenic |
| CTTATAGCTGCTAAAGTCAA+AGG | 0.519919 | 7.2:+26917719 | None:intergenic |
| TTGCTCTCACTTATTGTTGG+CGG | 0.520004 | 7.2:-26915597 | MS.gene85450:CDS |
| AAACGAGGACAGGGCAGAAG+AGG | 0.520289 | 7.2:-26920198 | MS.gene85450:CDS |
| CAAAGCCAATCCATCCTTCA+GGG | 0.520384 | 7.2:-26913676 | MS.gene85450:CDS |
| ATTCCAGGGCCACCTAAACT+AGG | 0.523489 | 7.2:+26914112 | None:intergenic |
| AGCAAACTTTGAAGATTGGA+AGG | 0.524543 | 7.2:+26915792 | None:intergenic |
| CGATCAACAAAATCTTCAAA+AGG | 0.526211 | 7.2:-26916325 | MS.gene85450:CDS |
| TCTGAGGGCATGGTTCATCA+TGG | 0.526272 | 7.2:-26914397 | MS.gene85450:CDS |
| GTTGCCACATGCTCACCAGC+GGG | 0.527738 | 7.2:+26915495 | None:intergenic |
| GAGAGCAAGTCATTTGGCCT+AGG | 0.528904 | 7.2:+26915612 | None:intergenic |
| TTGCAAGCTCAATGTTGGAA+AGG | 0.529138 | 7.2:-26917634 | MS.gene85450:CDS |
| TTCATATAAGAACTAATATG+AGG | 0.529628 | 7.2:+26914430 | None:intergenic |
| AGTGAAAGCTCGGCAGGAGG+AGG | 0.534807 | 7.2:+26914940 | None:intergenic |
| TGTAACAGAGGGTGATGAGC+AGG | 0.535189 | 7.2:+26914289 | None:intergenic |
| AAAATTCGGTGCAACGTGAT+GGG | 0.535207 | 7.2:+26915536 | None:intergenic |
| CATATCCCCTCTGGTTGGAG+GGG | 0.538419 | 7.2:+26920955 | None:intergenic |
| TAATTGAGCTAACCTTATAT+GGG | 0.539010 | 7.2:+26920463 | None:intergenic |
| CATCGTCAATAAGTGAAGAA+AGG | 0.540697 | 7.2:+26917789 | None:intergenic |
| AAAGGACTGCAGAGGATCAC+CGG | 0.540765 | 7.2:+26914717 | None:intergenic |
| CATCCCAGTAATCCGATGGC+TGG | 0.541345 | 7.2:-26914190 | MS.gene85450:CDS |
| ATCTGTTGGAAATTCGGCTA+AGG | 0.541935 | 7.2:-26914692 | MS.gene85450:CDS |
| CATGATGGACTTCTAGGTAG+TGG | 0.542210 | 7.2:-26920594 | MS.gene85450:CDS |
| CAGCCTCTTTCGAATTGATG+AGG | 0.542510 | 7.2:-26917868 | MS.gene85450:CDS |
| CATGGTCATGAGCTAGACTT+GGG | 0.542533 | 7.2:-26913638 | MS.gene85450:CDS |
| GCCATCGGATTACTGGGATG+AGG | 0.546106 | 7.2:+26914193 | None:intergenic |
| AACACTGAAGGAGTAACTAC+TGG | 0.546894 | 7.2:-26915174 | MS.gene85450:CDS |
| TTGTTGGCGGTGAAAAGGGC+GGG | 0.547662 | 7.2:-26915584 | MS.gene85450:CDS |
| CAGCAGCATCCTAGTTTAGG+TGG | 0.547812 | 7.2:-26914121 | MS.gene85450:CDS |
| TAGCTACCTCTGGTATCTCC+AGG | 0.552688 | 7.2:+26916408 | None:intergenic |
| ATGTCTGTTTAGTGAAAGCT+CGG | 0.553240 | 7.2:+26914930 | None:intergenic |
| ACAGCGATTCTCAATCGGAA+TGG | 0.553857 | 7.2:-26920868 | MS.gene85450:CDS |
| CTCCTGCGGTTGCTGGTGGA+AGG | 0.554479 | 7.2:-26913751 | MS.gene85450:CDS |
| ACTGAATACATAGCTACCTC+TGG | 0.554879 | 7.2:+26916398 | None:intergenic |
| ATTCCACTGTGAAGCATCGA+TGG | 0.555762 | 7.2:+26914808 | None:intergenic |
| ATGAAGCATGCGGCTTCTGA+GGG | 0.556349 | 7.2:-26914412 | MS.gene85450:CDS |
| ATACCAGCCATCGGATTACT+GGG | 0.556663 | 7.2:+26914187 | None:intergenic |
| ACATTGAGCTTGCAAAACCT+GGG | 0.558692 | 7.2:+26917642 | None:intergenic |
| CAAATAGATTTGAAGAGCAG+TGG | 0.558906 | 7.2:-26914864 | MS.gene85450:CDS |
| ATAAATCCTGAAAATAAAGA+AGG | 0.559114 | 7.2:-26916375 | MS.gene85450:CDS |
| GCTCATGACCATGAATCCCC+TGG | 0.559267 | 7.2:+26913648 | None:intergenic |
| CCCTCATCCCAGTAATCCGA+TGG | 0.560269 | 7.2:-26914194 | MS.gene85450:CDS |
| CCTAGAAGTCCATCATGCTC+AGG | 0.561191 | 7.2:+26920600 | None:intergenic |
| CCTCGTAATAGATGAGGTGG+AGG | 0.562711 | 7.2:+26914241 | None:intergenic |
| CACCTAAACTAGGATGCTGC+TGG | 0.563820 | 7.2:+26914122 | None:intergenic |
| TTCCTTCCACCAGCAACCGC+AGG | 0.564156 | 7.2:+26913749 | None:intergenic |
| ATCCTTCAGGGCACAGCCAG+GGG | 0.564325 | 7.2:-26913664 | MS.gene85450:CDS |
| AACCAAGCAGTGTTGTAACT+GGG | 0.566590 | 7.2:-26914321 | MS.gene85450:CDS |
| TATGGGCAAGGAGGATGATA+CGG | 0.568567 | 7.2:+26920480 | None:intergenic |
| GAAGAGGAAAGAAAGAGAAG+AGG | 0.570333 | 7.2:-26920182 | MS.gene85450:intron |
| AAGACTTTGGTGCAAAGACT+GGG | 0.570412 | 7.2:-26915314 | MS.gene85450:CDS |
| TTAGGTTATGGTGATTCTCA+TGG | 0.570575 | 7.2:-26914841 | MS.gene85450:CDS |
| CATCCTTCAGGGCACAGCCA+GGG | 0.571701 | 7.2:-26913665 | MS.gene85450:CDS |
| AGTGATTCAGCTGATGAGGT+TGG | 0.572491 | 7.2:+26914488 | None:intergenic |
| GCTTCACAGTGGAATTCCTA+AGG | 0.572729 | 7.2:-26914800 | MS.gene85450:CDS |
| TTATTCATATCCCCTCTGGT+TGG | 0.573170 | 7.2:+26920950 | None:intergenic |
| GACGACCCAGGCGCATACCC+AGG | 0.574337 | 7.2:+26920555 | None:intergenic |
| TCAATGTTGGAAAGGAATAC+GGG | 0.576407 | 7.2:-26917626 | MS.gene85450:CDS |
| CTTGCAATGATCTACGAGGC+TGG | 0.578206 | 7.2:+26920625 | None:intergenic |
| GCTCATTAGATCGATTTGGC+TGG | 0.578244 | 7.2:+26920502 | None:intergenic |
| TGAGTGATCAACTAAGAAAG+AGG | 0.579447 | 7.2:-26916215 | MS.gene85450:CDS |
| CTGGATCGACAGAGAAGTAC+CGG | 0.580183 | 7.2:-26921022 | MS.gene85450:CDS |
| GAGCTAACCTTATATGGGCA+AGG | 0.580312 | 7.2:+26920468 | None:intergenic |
| CTCAAACACTCATGCAGCAG+AGG | 0.580829 | 7.2:-26917591 | MS.gene85450:intron |
| GAATCCAGTTGATTCAACAT+TGG | 0.580957 | 7.2:+26914460 | None:intergenic |
| GCACCCCTTTCTGTTCAAAG+AGG | 0.581665 | 7.2:-26915036 | MS.gene85450:CDS |
| CTAGGTGTCAAGTCATCCAT+CGG | 0.582629 | 7.2:+26915630 | None:intergenic |
| GCATGCGGCTTCTGAGGGCA+TGG | 0.583557 | 7.2:-26914407 | MS.gene85450:CDS |
| GTTCATCCCCTCCAACCAGA+GGG | 0.583668 | 7.2:-26920961 | MS.gene85450:CDS |
| CGATGGATGACTTGACACCT+AGG | 0.584610 | 7.2:-26915629 | MS.gene85450:CDS |
| CTTTCTGTAACAAAGAAAGA+AGG | 0.584776 | 7.2:+26915256 | None:intergenic |
| TGGAGTTGTGAAGGTCGGTG+GGG | 0.585709 | 7.2:+26914508 | None:intergenic |
| TGCATGACCATCAATTGAAG+TGG | 0.587415 | 7.2:+26915287 | None:intergenic |
| AAAATTACCAACCAAGCAAG+TGG | 0.588223 | 7.2:-26916352 | MS.gene85450:CDS |
| TGTTGCCACATGCTCACCAG+CGG | 0.588771 | 7.2:+26915494 | None:intergenic |
| TTTAAATTTATCATATGCTG+CGG | 0.590462 | 7.2:-26916262 | MS.gene85450:CDS |
| ATTTCCCGGAAATTGACGGT+TGG | 0.590872 | 7.2:+26914366 | None:intergenic |
| CCTCCACCTCATCTATTACG+AGG | 0.592361 | 7.2:-26914241 | MS.gene85450:CDS |
| ATTGTTGGCGGTGAAAAGGG+CGG | 0.596760 | 7.2:-26915585 | MS.gene85450:CDS |
| GTAATAGATGAGGTGGAGGA+AGG | 0.596835 | 7.2:+26914245 | None:intergenic |
| AGTGGAATTCCTAAGGCTAG+TGG | 0.597076 | 7.2:-26914793 | MS.gene85450:CDS |
| TGCTGAAGTAAAAGGAAAGG+AGG | 0.597363 | 7.2:-26916136 | MS.gene85450:CDS |
| GTAAAAGGAAAGGAGGCTGT+TGG | 0.598324 | 7.2:-26916129 | MS.gene85450:CDS |
| GAACCTCTTTGAACAGAAAG+GGG | 0.598984 | 7.2:+26915033 | None:intergenic |
| ATACTAAAGCAGATGAGACA+TGG | 0.599211 | 7.2:-26915825 | MS.gene85450:CDS |
| TTGCAAGGTCCTGAGCATGA+TGG | 0.599793 | 7.2:-26920609 | MS.gene85450:CDS |
| TAATGCTGAAGTAAAAGGAA+AGG | 0.600440 | 7.2:-26916139 | MS.gene85450:CDS |
| CATATCAACTAGTATTGTTG+AGG | 0.601051 | 7.2:-26916031 | MS.gene85450:intron |
| TTACAACAGATGCACATGCA+AGG | 0.601162 | 7.2:-26914271 | MS.gene85450:CDS |
| GGCCCTGGAATGCAATTGCA+AGG | 0.602349 | 7.2:-26914100 | MS.gene85450:intron |
| TTTGAAGATTGGAAGGCATG+TGG | 0.603658 | 7.2:+26915799 | None:intergenic |
| AAACCTCGTAATAGATGAGG+TGG | 0.606264 | 7.2:+26914238 | None:intergenic |
| CCAAAGTGATTCAGCTGATG+AGG | 0.606783 | 7.2:+26914484 | None:intergenic |
| GTCTTGCTGAAGCATGTGGA+AGG | 0.606912 | 7.2:+26917675 | None:intergenic |
| TACAACAGATGCACATGCAA+GGG | 0.611737 | 7.2:-26914270 | MS.gene85450:CDS |
| TCACTAAACAGACATGGAAG+TGG | 0.613172 | 7.2:-26914922 | MS.gene85450:CDS |
| GAGGTTGGAGTTGTGAAGGT+CGG | 0.613220 | 7.2:+26914503 | None:intergenic |
| GACATGGTGCACAACACTGA+AGG | 0.614444 | 7.2:-26915186 | MS.gene85450:CDS |
| TACTCGAAGCAATGATTCAG+TGG | 0.616577 | 7.2:-26917750 | MS.gene85450:CDS |
| CAGTCAATTCTATCACAAGT+TGG | 0.616774 | 7.2:-26915375 | MS.gene85450:CDS |
| TATTGTAATCCTGAACCCGC+TGG | 0.616833 | 7.2:-26915510 | MS.gene85450:CDS |
| CATCGGATTACTGGGATGAG+GGG | 0.617494 | 7.2:+26914195 | None:intergenic |
| GGTTATTTAATTAGCTCCTG+CGG | 0.619583 | 7.2:-26913765 | MS.gene85450:intron |
| ATCATCCAGAAGCACTTCAG+AGG | 0.620079 | 7.2:-26913727 | MS.gene85450:CDS |
| AACTTAGGAGCAGACGACCC+AGG | 0.620756 | 7.2:+26920543 | None:intergenic |
| CAAGAACCAAACCCAATGCA+AGG | 0.621069 | 7.2:-26914160 | MS.gene85450:CDS |
| AATACTAGTTGATATGCCAC+TGG | 0.621435 | 7.2:+26916038 | None:intergenic |
| TAATGCAGAAAAGAAGCCGA+TGG | 0.623251 | 7.2:-26915646 | MS.gene85450:intron |
| TCTTGCATAATACCAGCCAT+CGG | 0.625481 | 7.2:+26914178 | None:intergenic |
| TAGTTCTTATATGAAGCATG+CGG | 0.630801 | 7.2:-26914422 | MS.gene85450:CDS |
| CGACTTATGAGAAATCAAGA+AGG | 0.632887 | 7.2:-26914595 | MS.gene85450:CDS |
| ATCGGATTACTGGGATGAGG+GGG | 0.633460 | 7.2:+26914196 | None:intergenic |
| GAATCCAGAAAAGAGTAAAG+CGG | 0.633508 | 7.2:-26917819 | MS.gene85450:CDS |
| GGAGTGTACAAACGAGGACA+GGG | 0.634080 | 7.2:-26920207 | MS.gene85450:CDS |
| AGGTTCAATTGGATCTTCAG+GGG | 0.635641 | 7.2:-26915016 | MS.gene85450:CDS |
| TGTTCGAGATTCTACTGACA+TGG | 0.638427 | 7.2:-26915202 | MS.gene85450:CDS |
| CAAATTTCTTGATAATCCAG+AGG | 0.639159 | 7.2:-26915151 | MS.gene85450:CDS |
| AACAGAGGGTGATGAGCAGG+AGG | 0.645933 | 7.2:+26914292 | None:intergenic |
| TTCTTTGGAGTGTACAAACG+AGG | 0.645940 | 7.2:-26920213 | MS.gene85450:CDS |
| CTGCTTGGTTGATGAAAAGG+AGG | 0.646171 | 7.2:+26914334 | None:intergenic |
| AGTGGTCTTGCTGAAGCATG+TGG | 0.647419 | 7.2:+26917671 | None:intergenic |
| TGAACCCGCTGGTGAGCATG+TGG | 0.647544 | 7.2:-26915499 | MS.gene85450:CDS |
| GGGAAACCTCGTAATAGATG+AGG | 0.647588 | 7.2:+26914235 | None:intergenic |
| AGTGACCGATCAAACCCACT+TGG | 0.648318 | 7.2:+26921254 | None:intergenic |
| ACTATGTGTTGACAGAGCAC+CGG | 0.649813 | 7.2:+26921003 | None:intergenic |
| TGATGAGGTTGGAGTTGTGA+AGG | 0.650251 | 7.2:+26914499 | None:intergenic |
| TTAGTTTCTCTACGCGAGTG+AGG | 0.650747 | 7.2:+26920263 | None:intergenic |
| GAGCTTTCACTAAACAGACA+TGG | 0.658732 | 7.2:-26914928 | MS.gene85450:CDS |
| CATTGAGCTTGCAAAACCTG+GGG | 0.660138 | 7.2:+26917643 | None:intergenic |
| CTATTACGAGGTTTCCCAAG+GGG | 0.661354 | 7.2:-26914229 | MS.gene85450:CDS |
| AAGCTTGTATAGGATAGACT+CGG | 0.661638 | 7.2:+26916083 | None:intergenic |
| TTTGCAAAGAGTTTCCAAGT+GGG | 0.664496 | 7.2:-26921268 | MS.gene85450:CDS |
| AGTTCATCCCCTCCAACCAG+AGG | 0.664892 | 7.2:-26920962 | MS.gene85450:CDS |
| TCTATTACGAGGTTTCCCAA+GGG | 0.667166 | 7.2:-26914230 | MS.gene85450:CDS |
| TTTAGTGAAAGCTCGGCAGG+AGG | 0.668631 | 7.2:+26914937 | None:intergenic |
| CTTATATCATAAGGACCACG+AGG | 0.671877 | 7.2:+26914562 | None:intergenic |
| CAGCCTCGTAGATCATTGCA+AGG | 0.673973 | 7.2:-26920624 | MS.gene85450:CDS |
| ATTTGCAAAGAGTTTCCAAG+TGG | 0.675462 | 7.2:-26921269 | MS.gene85450:CDS |
| AATGCTTCAACGCTAACCAG+TGG | 0.679995 | 7.2:-26916054 | MS.gene85450:CDS |
| TCGAAGCAATGATTCAGTGG+AGG | 0.680467 | 7.2:-26917747 | MS.gene85450:CDS |
| CTAACCTTATATGGGCAAGG+AGG | 0.686431 | 7.2:+26920471 | None:intergenic |
| TGTGCATCTGTTGTAACAGA+GGG | 0.689797 | 7.2:+26914278 | None:intergenic |
| TCAAGTTATCTTCTTCAGGG+AGG | 0.696245 | 7.2:+26914746 | None:intergenic |
| GAAGGTCAAGCATACCCTCG+TGG | 0.700243 | 7.2:-26914577 | MS.gene85450:CDS |
| GTGATGGGTAGTCTCTACAC+CGG | 0.708428 | 7.2:+26915551 | None:intergenic |
| ATGTGCATCTGTTGTAACAG+AGG | 0.708955 | 7.2:+26914277 | None:intergenic |
| GACCCAGGCGCATACCCAGG+TGG | 0.710888 | 7.2:+26920558 | None:intergenic |
| TTCATCCCCTCCAACCAGAG+GGG | 0.715029 | 7.2:-26920960 | MS.gene85450:CDS |
| TCTTGCTGAAGCATGTGGAA+GGG | 0.717277 | 7.2:+26917676 | None:intergenic |
| CTTGTGCCTGGAGATACCAG+AGG | 0.725088 | 7.2:-26916414 | MS.gene85450:CDS |
| GGACCTTGCAATGATCTACG+AGG | 0.729062 | 7.2:+26920621 | None:intergenic |
| ATTGAGCTTGCAAAACCTGG+GGG | 0.731235 | 7.2:+26917644 | None:intergenic |
| AATCCATCGATGCTTCACAG+TGG | 0.764077 | 7.2:-26914811 | MS.gene85450:CDS |
| TTATATCATAAGGACCACGA+GGG | 0.766184 | 7.2:+26914563 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 26913622 | 26921513 | 26913622 | ID=MS.gene85450 |
| chr7.2 | mRNA | 26913622 | 26921513 | 26913622 | ID=MS.gene85450.t1;Parent=MS.gene85450 |
| chr7.2 | exon | 26921452 | 26921513 | 26921452 | ID=MS.gene85450.t1.exon1;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26921452 | 26921513 | 26921452 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26921248 | 26921346 | 26921248 | ID=MS.gene85450.t1.exon2;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26921248 | 26921346 | 26921248 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26920861 | 26921063 | 26920861 | ID=MS.gene85450.t1.exon3;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26920861 | 26921063 | 26920861 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26920476 | 26920669 | 26920476 | ID=MS.gene85450.t1.exon4;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26920476 | 26920669 | 26920476 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26920183 | 26920288 | 26920183 | ID=MS.gene85450.t1.exon5;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26920183 | 26920288 | 26920183 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26917592 | 26917887 | 26917592 | ID=MS.gene85450.t1.exon6;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26917592 | 26917887 | 26917592 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26916032 | 26916445 | 26916032 | ID=MS.gene85450.t1.exon7;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26916032 | 26916445 | 26916032 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26915773 | 26915854 | 26915773 | ID=MS.gene85450.t1.exon8;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26915773 | 26915854 | 26915773 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26914101 | 26915660 | 26914101 | ID=MS.gene85450.t1.exon9;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26914101 | 26915660 | 26914101 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| chr7.2 | exon | 26913622 | 26913773 | 26913622 | ID=MS.gene85450.t1.exon10;Parent=MS.gene85450.t1 |
| chr7.2 | CDS | 26913622 | 26913773 | 26913622 | ID=cds.MS.gene85450.t1;Parent=MS.gene85450.t1 |
| Gene Sequence |
| Protein sequence |