Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85540.t1 | XP_003624056.1 | 99.5 | 426 | 2 | 0 | 1 | 426 | 1 | 426 | 4.80E-242 | 846.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85540.t1 | Q8RX88 | 83.8 | 421 | 68 | 0 | 1 | 421 | 1 | 421 | 2.9e-203 | 709.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85540.t1 | G7L6L7 | 99.5 | 426 | 2 | 0 | 1 | 426 | 1 | 426 | 3.5e-242 | 846.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050076 | MS.gene85540 | -0.807577 | 4.72E-50 | -1.69E-46 |
| MS.gene058657 | MS.gene85540 | 0.863099 | 3.17E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85540.t1 | MTR_7g078760 | 99.531 | 426 | 2 | 0 | 1 | 426 | 1 | 426 | 0.0 | 869 |
| MS.gene85540.t1 | MTR_8g028680 | 59.132 | 438 | 157 | 5 | 1 | 421 | 1 | 433 | 1.93e-167 | 477 |
| MS.gene85540.t1 | MTR_4g065940 | 63.158 | 95 | 4 | 1 | 246 | 340 | 15 | 78 | 2.93e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85540.t1 | AT4G01320 | 83.848 | 421 | 68 | 0 | 1 | 421 | 1 | 421 | 0.0 | 730 |
| MS.gene85540.t1 | AT4G01320 | 84.108 | 409 | 65 | 0 | 13 | 421 | 1 | 409 | 0.0 | 711 |
| MS.gene85540.t1 | AT4G01320 | 84.108 | 409 | 65 | 0 | 13 | 421 | 1 | 409 | 0.0 | 711 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50232 | gene | 3387 | 10985 | 3387 | ID=MS.gene85540 |
| 50232 | mRNA | 3387 | 10985 | 3387 | ID=MS.gene85540.t1;Parent=MS.gene85540 |
| 50232 | exon | 10955 | 10985 | 10955 | ID=MS.gene85540.t1.exon1;Parent=MS.gene85540.t1 |
| 50232 | CDS | 10955 | 10985 | 10955 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 9726 | 9873 | 9726 | ID=MS.gene85540.t1.exon2;Parent=MS.gene85540.t1 |
| 50232 | CDS | 9726 | 9873 | 9726 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 9480 | 9564 | 9480 | ID=MS.gene85540.t1.exon3;Parent=MS.gene85540.t1 |
| 50232 | CDS | 9480 | 9564 | 9480 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 9301 | 9396 | 9301 | ID=MS.gene85540.t1.exon4;Parent=MS.gene85540.t1 |
| 50232 | CDS | 9301 | 9396 | 9301 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 8979 | 9044 | 8979 | ID=MS.gene85540.t1.exon5;Parent=MS.gene85540.t1 |
| 50232 | CDS | 8979 | 9044 | 8979 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 8730 | 8828 | 8730 | ID=MS.gene85540.t1.exon6;Parent=MS.gene85540.t1 |
| 50232 | CDS | 8730 | 8828 | 8730 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 8421 | 8534 | 8421 | ID=MS.gene85540.t1.exon7;Parent=MS.gene85540.t1 |
| 50232 | CDS | 8421 | 8534 | 8421 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 7177 | 7287 | 7177 | ID=MS.gene85540.t1.exon8;Parent=MS.gene85540.t1 |
| 50232 | CDS | 7177 | 7287 | 7177 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 6956 | 7018 | 6956 | ID=MS.gene85540.t1.exon9;Parent=MS.gene85540.t1 |
| 50232 | CDS | 6956 | 7018 | 6956 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 5789 | 5881 | 5789 | ID=MS.gene85540.t1.exon10;Parent=MS.gene85540.t1 |
| 50232 | CDS | 5789 | 5881 | 5789 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 5245 | 5358 | 5245 | ID=MS.gene85540.t1.exon11;Parent=MS.gene85540.t1 |
| 50232 | CDS | 5245 | 5358 | 5245 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 3855 | 3926 | 3855 | ID=MS.gene85540.t1.exon12;Parent=MS.gene85540.t1 |
| 50232 | CDS | 3855 | 3926 | 3855 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 3599 | 3664 | 3599 | ID=MS.gene85540.t1.exon13;Parent=MS.gene85540.t1 |
| 50232 | CDS | 3599 | 3664 | 3599 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| 50232 | exon | 3387 | 3509 | 3387 | ID=MS.gene85540.t1.exon14;Parent=MS.gene85540.t1 |
| 50232 | CDS | 3387 | 3509 | 3387 | ID=cds.MS.gene85540.t1;Parent=MS.gene85540.t1 |
| Gene Sequence |
| Protein sequence |
