Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85559.t1 | XP_013468729.1 | 99.7 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 4.40E-182 | 647.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85559.t1 | Q9FSF0 | 92.5 | 332 | 25 | 0 | 1 | 332 | 1 | 332 | 9.2e-173 | 607.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85559.t1 | A0A072VMC4 | 99.7 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 3.2e-182 | 647.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85559 | MS.gene68423 | PPI |
| MS.gene85559 | MS.gene21413 | PPI |
| MS.gene85559 | MS.gene032247 | PPI |
| MS.gene85559 | MS.gene005767 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85559.t1 | MTR_1g076130 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 680 |
| MS.gene85559.t1 | MTR_1g043040 | 93.373 | 332 | 22 | 0 | 1 | 332 | 1 | 332 | 0.0 | 622 |
| MS.gene85559.t1 | MTR_8g005980 | 85.106 | 329 | 49 | 0 | 3 | 331 | 85 | 413 | 0.0 | 562 |
| MS.gene85559.t1 | MTR_1g090730 | 39.818 | 329 | 191 | 4 | 3 | 328 | 92 | 416 | 5.37e-74 | 235 |
| MS.gene85559.t1 | MTR_1g090730 | 41.852 | 270 | 153 | 1 | 3 | 272 | 92 | 357 | 2.29e-62 | 204 |
| MS.gene85559.t1 | MTR_7g037650 | 73.913 | 46 | 12 | 0 | 15 | 60 | 24 | 69 | 7.01e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85559.t1 | AT1G04410 | 90.060 | 332 | 33 | 0 | 1 | 332 | 1 | 332 | 0.0 | 605 |
| MS.gene85559.t1 | AT5G43330 | 90.060 | 332 | 33 | 0 | 1 | 332 | 1 | 332 | 0.0 | 600 |
| MS.gene85559.t1 | AT5G56720 | 72.892 | 332 | 90 | 0 | 1 | 332 | 40 | 371 | 0.0 | 512 |
| MS.gene85559.t1 | AT5G58330 | 41.641 | 329 | 185 | 4 | 3 | 328 | 96 | 420 | 6.18e-79 | 248 |
| MS.gene85559.t1 | AT5G58330 | 41.641 | 329 | 185 | 4 | 3 | 328 | 97 | 421 | 6.93e-79 | 248 |
| MS.gene85559.t1 | AT5G58330 | 41.587 | 315 | 177 | 4 | 17 | 328 | 2 | 312 | 5.59e-76 | 237 |
Find 91 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCATTCCCTCTTCTTAA+AGG | 0.234412 | 1.3:+54546309 | MS.gene85559:CDS |
| TGGAGGATCACGGGCTGGTC+AGG | 0.252087 | 1.3:-54546225 | None:intergenic |
| ATCACTGAACGGTGTTAAAA+TGG | 0.283888 | 1.3:+54546275 | MS.gene85559:CDS |
| CACATTAGAGATTGGGTTCT+AGG | 0.308508 | 1.3:+54547926 | MS.gene85559:CDS |
| ATCAAGGCATTGGTGTTTGC+TGG | 0.326876 | 1.3:-54547443 | None:intergenic |
| TGACCAGACTGGACCATAAC+AGG | 0.343288 | 1.3:+54547513 | MS.gene85559:CDS |
| TTTGACCCAGTGCCCTGTTA+TGG | 0.361476 | 1.3:-54547526 | None:intergenic |
| TGCAATATCATCAGGGAACC+TGG | 0.363492 | 1.3:+54548040 | MS.gene85559:intron |
| TGGAGTCAATATTGCTGTTA+TGG | 0.370670 | 1.3:+54546501 | MS.gene85559:CDS |
| CTCTTGTCCCTATGATTGCC+AGG | 0.371373 | 1.3:+54546187 | MS.gene85559:CDS |
| ACAGTTGCGTGGTTGACATC+AGG | 0.383245 | 1.3:-54547626 | None:intergenic |
| TGATTGCAGCACCCCGTTGT+TGG | 0.384508 | 1.3:-54547850 | None:intergenic |
| CATTGCCACCGTCCAACAAC+GGG | 0.390186 | 1.3:+54547838 | MS.gene85559:CDS |
| GGCATTGGTGTTTGCTGGGT+TGG | 0.393777 | 1.3:-54547438 | None:intergenic |
| ATCACTCCCCTGGCAATCAT+AGG | 0.399565 | 1.3:-54546195 | None:intergenic |
| GCTTTCTGAGGAGAAGGCTT+TGG | 0.399799 | 1.3:+54548397 | MS.gene85559:CDS |
| CTTGTGACCACATTAGAGAT+TGG | 0.400822 | 1.3:+54547918 | MS.gene85559:CDS |
| CACCAATGCCTTGATCTTGA+AGG | 0.415103 | 1.3:+54547451 | MS.gene85559:CDS |
| TTTAACACCGTTCAGTGATT+CGG | 0.419237 | 1.3:-54546271 | None:intergenic |
| CCTGTTCGTGTTCTTGTCAC+TGG | 0.433814 | 1.3:+54545465 | MS.gene85559:CDS |
| CCAGTGACAAGAACACGAAC+AGG | 0.438629 | 1.3:-54545465 | None:intergenic |
| TTGTGACCACATTAGAGATT+GGG | 0.444343 | 1.3:+54547919 | MS.gene85559:CDS |
| TGCCCTGTTATGGTCCAGTC+TGG | 0.449293 | 1.3:-54547516 | None:intergenic |
| CCGTTCAGTGATTCGGCTGC+TGG | 0.450461 | 1.3:-54546264 | None:intergenic |
| TCGCCATTGCGAGTTGTGAC+AGG | 0.451805 | 1.3:-54548126 | None:intergenic |
| AATATTGCTGTTATGGTTGG+TGG | 0.454064 | 1.3:+54546508 | MS.gene85559:CDS |
| TTCAGTGATTCGGCTGCTGG+TGG | 0.473142 | 1.3:-54546261 | None:intergenic |
| CATTACTTGTTTGACCAGAC+TGG | 0.477459 | 1.3:+54547502 | MS.gene85559:CDS |
| GTCAATATTGCTGTTATGGT+TGG | 0.483183 | 1.3:+54546505 | MS.gene85559:CDS |
| GGAGGATCACGGGCTGGTCA+GGG | 0.487190 | 1.3:-54546224 | None:intergenic |
| AACTCGTAGCTGATGATGCC+TGG | 0.493691 | 1.3:+54547681 | MS.gene85559:CDS |
| GTTCTTGTCACTGGTGCTGC+AGG | 0.494198 | 1.3:+54545474 | MS.gene85559:CDS |
| GGCGAATGGCAAATAGTTCA+AGG | 0.495465 | 1.3:+54548144 | MS.gene85559:CDS |
| TTCCTTCAAGATCAAGGCAT+TGG | 0.495936 | 1.3:-54547453 | None:intergenic |
| TGCTACAACTGATGTGGTTG+AGG | 0.501828 | 1.3:+54546471 | MS.gene85559:CDS |
| AGGGCCGAGCATCACTCCCC+TGG | 0.504498 | 1.3:-54546205 | None:intergenic |
| AGAAGAGCTTTCTGAGGAGA+AGG | 0.511032 | 1.3:+54548391 | MS.gene85559:CDS |
| AGCGAATTCCTTCAAGATCA+AGG | 0.519920 | 1.3:-54547459 | None:intergenic |
| ATATTGCTGTTATGGTTGGT+GGG | 0.521566 | 1.3:+54546509 | MS.gene85559:CDS |
| TCAGGGAACCTGGGTATCGA+TGG | 0.524300 | 1.3:+54548050 | MS.gene85559:intron |
| CGGTGTTAAAATGGAGTTGG+TGG | 0.529018 | 1.3:+54546284 | MS.gene85559:CDS |
| TCAAGCATGTGGAGGATCAC+GGG | 0.532929 | 1.3:-54546234 | None:intergenic |
| CGCCATTGCGAGTTGTGACA+GGG | 0.533982 | 1.3:-54548125 | None:intergenic |
| CATCATCAGCTACGAGTTCA+CGG | 0.539286 | 1.3:-54547676 | None:intergenic |
| TCGATGGGAGTTTATTCTGA+TGG | 0.539461 | 1.3:+54548066 | MS.gene85559:CDS |
| GTCAAGCATGTGGAGGATCA+CGG | 0.540541 | 1.3:-54546235 | None:intergenic |
| TCAAGGCATTGGTGTTTGCT+GGG | 0.541276 | 1.3:-54547442 | None:intergenic |
| CAGTTGCGTGGTTGACATCA+GGG | 0.541284 | 1.3:-54547625 | None:intergenic |
| CTGGACCATAACAGGGCACT+GGG | 0.542029 | 1.3:+54547521 | MS.gene85559:CDS |
| ACTGGACCATAACAGGGCAC+TGG | 0.543003 | 1.3:+54547520 | MS.gene85559:CDS |
| AACTCAAACCTTTAAGAAGA+GGG | 0.552886 | 1.3:-54546317 | None:intergenic |
| TCACTCCCCTGGCAATCATA+GGG | 0.553376 | 1.3:-54546194 | None:intergenic |
| GGTGGGTTCCCTAGAAAAGA+AGG | 0.553608 | 1.3:+54546526 | MS.gene85559:CDS |
| GTTCCCTAGAAAAGAAGGTA+TGG | 0.561966 | 1.3:+54546531 | MS.gene85559:CDS |
| GGATCTTACAATGTACCCGC+TGG | 0.562224 | 1.3:+54548087 | MS.gene85559:CDS |
| GACAGCAGAAGAGCTTTCTG+AGG | 0.563983 | 1.3:+54548385 | MS.gene85559:CDS |
| TCACAACTCGCAATGGCGAA+TGG | 0.564475 | 1.3:+54548130 | MS.gene85559:CDS |
| TTCCCTGTCACAACTCGCAA+TGG | 0.566100 | 1.3:+54548123 | MS.gene85559:CDS |
| ATTGCCAGGGGAGTGATGCT+CGG | 0.570606 | 1.3:+54546201 | MS.gene85559:CDS |
| AAACTCAAACCTTTAAGAAG+AGG | 0.571371 | 1.3:-54546318 | None:intergenic |
| TGCAGCACCCCGTTGTTGGA+CGG | 0.573461 | 1.3:-54547846 | None:intergenic |
| TCTTGTCCCTATGATTGCCA+GGG | 0.574263 | 1.3:+54546188 | MS.gene85559:CDS |
| GCATGTGGAGGATCACGGGC+TGG | 0.580601 | 1.3:-54546230 | None:intergenic |
| TCAGTGATTCGGCTGCTGGT+GGG | 0.585206 | 1.3:-54546260 | None:intergenic |
| GATGTGGTTGAGGGATGCAC+TGG | 0.588132 | 1.3:+54546481 | MS.gene85559:CDS |
| CAGGGAACCTGGGTATCGAT+GGG | 0.588520 | 1.3:+54548051 | MS.gene85559:intron |
| AATGAATAGATTAGTCCAGC+GGG | 0.591914 | 1.3:-54548102 | None:intergenic |
| GTGGTCACAAGCAGCGCTAG+CGG | 0.592624 | 1.3:-54547906 | None:intergenic |
| CAGGGTATTGACTTGACGAA+TGG | 0.595251 | 1.3:-54547607 | None:intergenic |
| AGCACCCCGTTGTTGGACGG+TGG | 0.598020 | 1.3:-54547843 | None:intergenic |
| GCTACAACTGATGTGGTTGA+GGG | 0.599906 | 1.3:+54546472 | MS.gene85559:CDS |
| TCATTGCCACCGTCCAACAA+CGG | 0.602969 | 1.3:+54547837 | MS.gene85559:CDS |
| ATAAACTCCCATCGATACCC+AGG | 0.604419 | 1.3:-54548058 | None:intergenic |
| CTGGTGGGATGTCAAGCATG+TGG | 0.608538 | 1.3:-54546245 | None:intergenic |
| TTCTGAAAGACTGAACGTTG+AGG | 0.610807 | 1.3:+54547550 | MS.gene85559:CDS |
| CTAGAACCCAATCTCTAATG+TGG | 0.612432 | 1.3:-54547925 | None:intergenic |
| ACATGCTGCTGCAAACTGCA+AGG | 0.624025 | 1.3:+54546618 | MS.gene85559:CDS |
| GCAATATCATCAGGGAACCT+GGG | 0.624982 | 1.3:+54548041 | MS.gene85559:intron |
| TCAGCTACGAGTTCACGGAC+AGG | 0.633683 | 1.3:-54547671 | None:intergenic |
| GAACGGTGTTAAAATGGAGT+TGG | 0.636523 | 1.3:+54546281 | MS.gene85559:CDS |
| GACCAGACTGGACCATAACA+GGG | 0.642184 | 1.3:+54547514 | MS.gene85559:CDS |
| TTGGGTTCTAGGAACTCCTG+AGG | 0.644314 | 1.3:+54547937 | MS.gene85559:CDS |
| GGAAACAAGCTGTCTAAGAG+AGG | 0.644922 | 1.3:-54548430 | None:intergenic |
| CTTGTCCCTATGATTGCCAG+GGG | 0.651791 | 1.3:+54546189 | MS.gene85559:CDS |
| CCAGCAGCCGAATCACTGAA+CGG | 0.657663 | 1.3:+54546264 | MS.gene85559:CDS |
| CTAGAAAAGAAGGTATGGAG+AGG | 0.663254 | 1.3:+54546536 | MS.gene85559:CDS |
| TGTCGTTGCTACAACTGATG+TGG | 0.674756 | 1.3:+54546465 | MS.gene85559:CDS |
| GAATGAATAGATTAGTCCAG+CGG | 0.674762 | 1.3:-54548103 | None:intergenic |
| GTGGGATGTCAAGCATGTGG+AGG | 0.682561 | 1.3:-54546242 | None:intergenic |
| CAGTGACAAGAACACGAACA+GGG | 0.694789 | 1.3:-54545464 | None:intergenic |
| ATTGCCACCGTCCAACAACG+GGG | 0.778592 | 1.3:+54547839 | MS.gene85559:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAAATAAATTCAATAC+AGG | - | chr1.3:54547103-54547122 | None:intergenic | 15.0% |
| !! | AGAAAATTGCATAATTATAA+GGG | - | chr1.3:54545800-54545819 | None:intergenic | 15.0% |
| !! | ATGTGAAAAATGTTATAATT+TGG | + | chr1.3:54547579-54547598 | MS.gene85559:CDS | 15.0% |
| !! | TAAAGAAATGTAAATATTTC+AGG | - | chr1.3:54547385-54547404 | None:intergenic | 15.0% |
| !! | TGTGAAAAATGTTATAATTT+GGG | + | chr1.3:54547580-54547599 | MS.gene85559:CDS | 15.0% |
| !! | TTCAAATTCTTTATATTGAA+TGG | + | chr1.3:54547986-54548005 | MS.gene85559:intron | 15.0% |
| !!! | AGATTTTGATAAATTATTAC+TGG | + | chr1.3:54548169-54548188 | MS.gene85559:intron | 15.0% |
| !!! | TATTTTTTTGACATAAAATG+CGG | - | chr1.3:54546704-54546723 | None:intergenic | 15.0% |
| !!! | TTGTTTTATATAGCAAATAA+AGG | + | chr1.3:54548269-54548288 | MS.gene85559:intron | 15.0% |
| !! | ACAACTTAATTAAATTCGTA+TGG | - | chr1.3:54547004-54547023 | None:intergenic | 20.0% |
| !! | ATTTCAACATAAAATCTTTG+AGG | + | chr1.3:54546108-54546127 | MS.gene85559:intron | 20.0% |
| !! | ATTTCTATAAACTCTCAAAT+AGG | - | chr1.3:54545851-54545870 | None:intergenic | 20.0% |
| !! | CAGAAAATTGCATAATTATA+AGG | - | chr1.3:54545801-54545820 | None:intergenic | 20.0% |
| !! | GTGAAAAATGTTATAATTTG+GGG | + | chr1.3:54547581-54547600 | MS.gene85559:CDS | 20.0% |
| !! | GTTTCCAAAAATATGTAAAA+AGG | - | chr1.3:54547340-54547359 | None:intergenic | 20.0% |
| !! | TATAGAAATAACATATGACA+TGG | + | chr1.3:54545862-54545881 | MS.gene85559:intron | 20.0% |
| !! | TGCCTTAATACAAATAAAAA+CGG | - | chr1.3:54548246-54548265 | None:intergenic | 20.0% |
| !! | TTGTGATAATTATTTGTTTC+AGG | + | chr1.3:54546442-54546461 | MS.gene85559:intron | 20.0% |
| !! | TTTAGAAATAGAACTATGTT+TGG | + | chr1.3:54545629-54545648 | MS.gene85559:intron | 20.0% |
| !! | TTTCTATAAACTCTCAAATA+GGG | - | chr1.3:54545850-54545869 | None:intergenic | 20.0% |
| !!! | AAAAATGTTTTGCCAATTTT+AGG | + | chr1.3:54546150-54546169 | MS.gene85559:intron | 20.0% |
| !!! | ATTTGTCTAATTTTTTAACC+AGG | + | chr1.3:54548323-54548342 | MS.gene85559:intron | 20.0% |
| !!! | CTTTTGTTTTGTTTTGTTTA+AGG | + | chr1.3:54545535-54545554 | MS.gene85559:intron | 20.0% |
| !!! | GTAAACATTTTAACCATATT+TGG | - | chr1.3:54546074-54546093 | None:intergenic | 20.0% |
| !!! | TACGAATTTAATTAAGTTGT+TGG | + | chr1.3:54547004-54547023 | MS.gene85559:intron | 20.0% |
| !!! | TAGTCCTTTTTACATATTTT+TGG | + | chr1.3:54547333-54547352 | MS.gene85559:intron | 20.0% |
| ! | AGGTAACCATAATAAATTCT+GGG | + | chr1.3:54545494-54545513 | MS.gene85559:intron | 25.0% |
| ! | ATACTTCAGTAAATGCAAAA+TGG | - | chr1.3:54547781-54547800 | None:intergenic | 25.0% |
| ! | ATTCAATACAGGTAATATGT+TGG | - | chr1.3:54547092-54547111 | None:intergenic | 25.0% |
| ! | GAAATTTCACTTAACTAAGT+TGG | + | chr1.3:54547211-54547230 | MS.gene85559:intron | 25.0% |
| ! | GAATGTTTCACAAGATTAAA+AGG | + | chr1.3:54546417-54546436 | MS.gene85559:intron | 25.0% |
| ! | TATCCAATTTGTCCTAAAAT+TGG | - | chr1.3:54546165-54546184 | None:intergenic | 25.0% |
| ! | TGAAGTTGTTTATCCAAATA+TGG | + | chr1.3:54546058-54546077 | MS.gene85559:intron | 25.0% |
| ! | TTTATTTCCATAATCTCTCT+AGG | + | chr1.3:54545902-54545921 | MS.gene85559:intron | 25.0% |
| !! | AAACAAGTAATGTTTTTCTC+AGG | - | chr1.3:54547494-54547513 | None:intergenic | 25.0% |
| !! | TGATGTAATTTTCATTGTCA+AGG | + | chr1.3:54547801-54547820 | MS.gene85559:intron | 25.0% |
| !! | TTGAAAGGATATGTGTATTT+TGG | + | chr1.3:54547242-54547261 | MS.gene85559:intron | 25.0% |
| !! | TTTCAATTGATGAGTTTTCA+AGG | + | chr1.3:54548348-54548367 | MS.gene85559:CDS | 25.0% |
| !! | TTTTCATTGCAATATCATCA+GGG | + | chr1.3:54548033-54548052 | MS.gene85559:intron | 25.0% |
| !!! | GTCCGTTTTTATTTGTATTA+AGG | + | chr1.3:54548241-54548260 | MS.gene85559:intron | 25.0% |
| !!! | TGAGTTTTCAAGGAAAAAAT+TGG | + | chr1.3:54548358-54548377 | MS.gene85559:CDS | 25.0% |
| AAGTTATCCTAGAGAGATTA+TGG | - | chr1.3:54545912-54545931 | None:intergenic | 30.0% | |
| AATGCATTTGGATAATCCAT+AGG | + | chr1.3:54547152-54547171 | MS.gene85559:intron | 30.0% | |
| ATATTGAATGGCTTCAACTA+AGG | + | chr1.3:54547998-54548017 | MS.gene85559:intron | 30.0% | |
| ATGAAAGAGATGCATGAAAA+AGG | - | chr1.3:54546752-54546771 | None:intergenic | 30.0% | |
| ATGCATTTGGATAATCCATA+GGG | + | chr1.3:54547153-54547172 | MS.gene85559:intron | 30.0% | |
| CAATCAAGAAACATGATACA+AGG | - | chr1.3:54545603-54545622 | None:intergenic | 30.0% | |
| CAGGTAACCATAATAAATTC+TGG | + | chr1.3:54545493-54545512 | MS.gene85559:intron | 30.0% | |
| CTTGTATCATGTTTCTTGAT+TGG | + | chr1.3:54545601-54545620 | MS.gene85559:intron | 30.0% | |
| GAGAAACCCAGAATTTATTA+TGG | - | chr1.3:54545503-54545522 | None:intergenic | 30.0% | |
| TAGGGAAAATACTACAATTG+AGG | - | chr1.3:54545832-54545851 | None:intergenic | 30.0% | |
| TGAAAGAGATGCATGAAAAA+GGG | - | chr1.3:54546751-54546770 | None:intergenic | 30.0% | |
| ! | AAACTCAAACCTTTAAGAAG+AGG | - | chr1.3:54546321-54546340 | None:intergenic | 30.0% |
| ! | AACTCAAACCTTTAAGAAGA+GGG | - | chr1.3:54546320-54546339 | None:intergenic | 30.0% |
| ! | AGTAATGTTTTTCTCAGGAA+TGG | - | chr1.3:54547489-54547508 | None:intergenic | 30.0% |
| ! | CTTTTCATTGCAATATCATC+AGG | + | chr1.3:54548032-54548051 | MS.gene85559:intron | 30.0% |
| ! | GATTTGAGTTTGAATGCATT+TGG | + | chr1.3:54547140-54547159 | MS.gene85559:intron | 30.0% |
| ! | GCTTGATGATTCAGAATTAA+AGG | - | chr1.3:54546648-54546667 | None:intergenic | 30.0% |
| ! | TTGTCATAGTTTTTGTGTGA+TGG | + | chr1.3:54547052-54547071 | MS.gene85559:intron | 30.0% |
| ! | TTTTCATTGTCAAGGTTGAA+TGG | + | chr1.3:54547809-54547828 | MS.gene85559:intron | 30.0% |
| !!! | ATGTGTATTTTGGTCATGTA+TGG | + | chr1.3:54547252-54547271 | MS.gene85559:intron | 30.0% |
| !!! | TTGCCAATTTTAGGACAAAT+TGG | + | chr1.3:54546159-54546178 | MS.gene85559:intron | 30.0% |
| AACTCATCAATTGAAAGTCC+TGG | - | chr1.3:54548344-54548363 | None:intergenic | 35.0% | |
| ACGTCTTGAACAACCATATT+TGG | + | chr1.3:54546365-54546384 | MS.gene85559:intron | 35.0% | |
| AGAAACAGATTTCACCAGAA+TGG | - | chr1.3:54547294-54547313 | None:intergenic | 35.0% | |
| CCAAATCAACAAAATCCCTA+TGG | - | chr1.3:54547171-54547190 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTAC+AGG | + | chr1.3:54546885-54546904 | MS.gene85559:intron | 35.0% | |
| GAAAGAGATGCATGAAAAAG+GGG | - | chr1.3:54546750-54546769 | None:intergenic | 35.0% | |
| GCATCTCTTTCATATCTGTT+TGG | + | chr1.3:54546759-54546778 | MS.gene85559:intron | 35.0% | |
| TAAACTCTGTATCATCATGC+AGG | + | chr1.3:54547403-54547422 | MS.gene85559:intron | 35.0% | |
| TATTTGTCCATCAACATACC+AGG | - | chr1.3:54547702-54547721 | None:intergenic | 35.0% | |
| TTGTGACCACATTAGAGATT+GGG | + | chr1.3:54547919-54547938 | MS.gene85559:CDS | 35.0% | |
| TTTAACACCGTTCAGTGATT+CGG | - | chr1.3:54546274-54546293 | None:intergenic | 35.0% | |
| ! | AAGTTGGCTTCTTGTTTGAA+AGG | + | chr1.3:54547227-54547246 | MS.gene85559:intron | 35.0% |
| ! | AATATTGCTGTTATGGTTGG+TGG | + | chr1.3:54546508-54546527 | MS.gene85559:CDS | 35.0% |
| ! | AATGAATAGATTAGTCCAGC+GGG | - | chr1.3:54548105-54548124 | None:intergenic | 35.0% |
| ! | AGCTTGAAGTTGGTTTATGT+TGG | + | chr1.3:54546388-54546407 | MS.gene85559:intron | 35.0% |
| ! | ATATTGCTGTTATGGTTGGT+GGG | + | chr1.3:54546509-54546528 | MS.gene85559:CDS | 35.0% |
| ! | ATCACTGAACGGTGTTAAAA+TGG | + | chr1.3:54546275-54546294 | MS.gene85559:CDS | 35.0% |
| ! | ATGTTTTTCTCAGGAATGGA+TGG | - | chr1.3:54547485-54547504 | None:intergenic | 35.0% |
| ! | GAATGAATAGATTAGTCCAG+CGG | - | chr1.3:54548106-54548125 | None:intergenic | 35.0% |
| ! | GTCAATATTGCTGTTATGGT+TGG | + | chr1.3:54546505-54546524 | MS.gene85559:CDS | 35.0% |
| ! | TCTCCATACCTTCTTTTCTA+GGG | - | chr1.3:54546537-54546556 | None:intergenic | 35.0% |
| ! | TGGAGTCAATATTGCTGTTA+TGG | + | chr1.3:54546501-54546520 | MS.gene85559:CDS | 35.0% |
| !! | AAGAGATTTTAACAGTTGCG+TGG | - | chr1.3:54547640-54547659 | None:intergenic | 35.0% |
| !! | CCATAGGGATTTTGTTGATT+TGG | + | chr1.3:54547168-54547187 | MS.gene85559:intron | 35.0% |
| !! | TGTTGATTTGGTCATGTACT+AGG | + | chr1.3:54547180-54547199 | MS.gene85559:intron | 35.0% |
| AAGCTATCCTGTAGAGCTTA+TGG | - | chr1.3:54546895-54546914 | None:intergenic | 40.0% | |
| AAGTCCTTGTGATTCCATTC+TGG | + | chr1.3:54547277-54547296 | MS.gene85559:intron | 40.0% | |
| AGCGAATTCCTTCAAGATCA+AGG | - | chr1.3:54547462-54547481 | None:intergenic | 40.0% | |
| CACATTAGAGATTGGGTTCT+AGG | + | chr1.3:54547926-54547945 | MS.gene85559:CDS | 40.0% | |
| CATTACTTGTTTGACCAGAC+TGG | + | chr1.3:54547502-54547521 | MS.gene85559:CDS | 40.0% | |
| CCAACTTCAAGCTCCAAATA+TGG | - | chr1.3:54546381-54546400 | None:intergenic | 40.0% | |
| CTAGAACCCAATCTCTAATG+TGG | - | chr1.3:54547928-54547947 | None:intergenic | 40.0% | |
| CTTGTGACCACATTAGAGAT+TGG | + | chr1.3:54547918-54547937 | MS.gene85559:CDS | 40.0% | |
| GTTCCCTAGAAAAGAAGGTA+TGG | + | chr1.3:54546531-54546550 | MS.gene85559:CDS | 40.0% | |
| TCGATGGGAGTTTATTCTGA+TGG | + | chr1.3:54548066-54548085 | MS.gene85559:CDS | 40.0% | |
| TTCACCAGAATGGAATCACA+AGG | - | chr1.3:54547284-54547303 | None:intergenic | 40.0% | |
| TTCCTTCAAGATCAAGGCAT+TGG | - | chr1.3:54547456-54547475 | None:intergenic | 40.0% | |
| TTTGGTCATGTACTAGGTAG+AGG | + | chr1.3:54547186-54547205 | MS.gene85559:intron | 40.0% | |
| ! | CCATATTTGGAGCTTGAAGT+TGG | + | chr1.3:54546378-54546397 | MS.gene85559:intron | 40.0% |
| ! | CTAGAAAAGAAGGTATGGAG+AGG | + | chr1.3:54546536-54546555 | MS.gene85559:CDS | 40.0% |
| ! | CTCTCCATACCTTCTTTTCT+AGG | - | chr1.3:54546538-54546557 | None:intergenic | 40.0% |
| ! | GAACGGTGTTAAAATGGAGT+TGG | + | chr1.3:54546281-54546300 | MS.gene85559:CDS | 40.0% |
| ! | TTCTGAAAGACTGAACGTTG+AGG | + | chr1.3:54547550-54547569 | MS.gene85559:CDS | 40.0% |
| AAGCACTTGTGAGACTGCTT+GGG | + | chr1.3:54546816-54546835 | MS.gene85559:intron | 45.0% | |
| AGCAAGACATAACCAACCTC+AGG | - | chr1.3:54547956-54547975 | None:intergenic | 45.0% | |
| ATAAACTCCCATCGATACCC+AGG | - | chr1.3:54548061-54548080 | None:intergenic | 45.0% | |
| ATGCATGAAAAAGGGGAAGG+AGG | - | chr1.3:54546743-54546762 | None:intergenic | 45.0% | |
| CACCAATGCCTTGATCTTGA+AGG | + | chr1.3:54547451-54547470 | MS.gene85559:CDS | 45.0% | |
| CAGTGACAAGAACACGAACA+GGG | - | chr1.3:54545467-54545486 | None:intergenic | 45.0% | |
| CATCATCAGCTACGAGTTCA+CGG | - | chr1.3:54547679-54547698 | None:intergenic | 45.0% | |
| GAGATGCATGAAAAAGGGGA+AGG | - | chr1.3:54546746-54546765 | None:intergenic | 45.0% | |
| GATGATGCCTGGTATGTTGA+TGG | + | chr1.3:54547692-54547711 | MS.gene85559:intron | 45.0% | |
| GCAATATCATCAGGGAACCT+GGG | + | chr1.3:54548041-54548060 | MS.gene85559:intron | 45.0% | |
| GCTACAACTGATGTGGTTGA+GGG | + | chr1.3:54546472-54546491 | MS.gene85559:CDS | 45.0% | |
| GCTGCATTCCCTCTTCTTAA+AGG | + | chr1.3:54546309-54546328 | MS.gene85559:CDS | 45.0% | |
| GGCGAATGGCAAATAGTTCA+AGG | + | chr1.3:54548144-54548163 | MS.gene85559:CDS | 45.0% | |
| GGGGAAGGAGGAACATAAAA+CGG | - | chr1.3:54546731-54546750 | None:intergenic | 45.0% | |
| GTCTCACAAGTGCTTGCTTA+TGG | - | chr1.3:54546811-54546830 | None:intergenic | 45.0% | |
| TCTTGTCCCTATGATTGCCA+GGG | + | chr1.3:54546188-54546207 | MS.gene85559:CDS | 45.0% | |
| TGCAATATCATCAGGGAACC+TGG | + | chr1.3:54548040-54548059 | MS.gene85559:intron | 45.0% | |
| TGCTACAACTGATGTGGTTG+AGG | + | chr1.3:54546471-54546490 | MS.gene85559:CDS | 45.0% | |
| TGTCGTTGCTACAACTGATG+TGG | + | chr1.3:54546465-54546484 | MS.gene85559:CDS | 45.0% | |
| ! | AGAAGAGCTTTCTGAGGAGA+AGG | + | chr1.3:54548391-54548410 | MS.gene85559:CDS | 45.0% |
| ! | CGGTGTTAAAATGGAGTTGG+TGG | + | chr1.3:54546284-54546303 | MS.gene85559:CDS | 45.0% |
| !! | ATCAAGGCATTGGTGTTTGC+TGG | - | chr1.3:54547446-54547465 | None:intergenic | 45.0% |
| !! | CAGGGTATTGACTTGACGAA+TGG | - | chr1.3:54547610-54547629 | None:intergenic | 45.0% |
| !! | TCAAGGCATTGGTGTTTGCT+GGG | - | chr1.3:54547445-54547464 | None:intergenic | 45.0% |
| !! | TAAAAAAAAAAAGTTTAAAT+TGG | - | chr1.3:54547725-54547744 | None:intergenic | 5.0% |
| ACAGTTGCGTGGTTGACATC+AGG | - | chr1.3:54547629-54547648 | None:intergenic | 50.0% | |
| ACATGCTGCTGCAAACTGCA+AGG | + | chr1.3:54546618-54546637 | MS.gene85559:CDS | 50.0% | |
| ATCACTCCCCTGGCAATCAT+AGG | - | chr1.3:54546198-54546217 | None:intergenic | 50.0% | |
| CAAGCACTTGTGAGACTGCT+TGG | + | chr1.3:54546815-54546834 | MS.gene85559:intron | 50.0% | |
| CAGTTGCGTGGTTGACATCA+GGG | - | chr1.3:54547628-54547647 | None:intergenic | 50.0% | |
| CCAGTGACAAGAACACGAAC+AGG | - | chr1.3:54545468-54545487 | None:intergenic | 50.0% | |
| CCTGTTCGTGTTCTTGTCAC+TGG | + | chr1.3:54545465-54545484 | MS.gene85559:CDS | 50.0% | |
| CTCTTGTCCCTATGATTGCC+AGG | + | chr1.3:54546187-54546206 | MS.gene85559:CDS | 50.0% | |
| CTTGTCCCTATGATTGCCAG+GGG | + | chr1.3:54546189-54546208 | MS.gene85559:CDS | 50.0% | |
| GACAGCAGAAGAGCTTTCTG+AGG | + | chr1.3:54548385-54548404 | MS.gene85559:CDS | 50.0% | |
| GACCAGACTGGACCATAACA+GGG | + | chr1.3:54547514-54547533 | MS.gene85559:CDS | 50.0% | |
| GGATCTTACAATGTACCCGC+TGG | + | chr1.3:54548087-54548106 | MS.gene85559:CDS | 50.0% | |
| GTCAAGCATGTGGAGGATCA+CGG | - | chr1.3:54546238-54546257 | None:intergenic | 50.0% | |
| TCAAGCATGTGGAGGATCAC+GGG | - | chr1.3:54546237-54546256 | None:intergenic | 50.0% | |
| TCACAACTCGCAATGGCGAA+TGG | + | chr1.3:54548130-54548149 | MS.gene85559:CDS | 50.0% | |
| TCACTCCCCTGGCAATCATA+GGG | - | chr1.3:54546197-54546216 | None:intergenic | 50.0% | |
| TCATTGCCACCGTCCAACAA+CGG | + | chr1.3:54547837-54547856 | MS.gene85559:CDS | 50.0% | |
| TGACCAGACTGGACCATAAC+AGG | + | chr1.3:54547513-54547532 | MS.gene85559:CDS | 50.0% | |
| TTCCCTGTCACAACTCGCAA+TGG | + | chr1.3:54548123-54548142 | MS.gene85559:CDS | 50.0% | |
| TTTGACCCAGTGCCCTGTTA+TGG | - | chr1.3:54547529-54547548 | None:intergenic | 50.0% | |
| ! | AACTCGTAGCTGATGATGCC+TGG | + | chr1.3:54547681-54547700 | MS.gene85559:CDS | 50.0% |
| ! | GCTTTCTGAGGAGAAGGCTT+TGG | + | chr1.3:54548397-54548416 | MS.gene85559:CDS | 50.0% |
| ! | GGTGGGTTCCCTAGAAAAGA+AGG | + | chr1.3:54546526-54546545 | MS.gene85559:CDS | 50.0% |
| !! | GTTCTAGGAACTCCTGAGGT+TGG | + | chr1.3:54547941-54547960 | MS.gene85559:intron | 50.0% |
| !! | TTGGGTTCTAGGAACTCCTG+AGG | + | chr1.3:54547937-54547956 | MS.gene85559:CDS | 50.0% |
| ACTGGACCATAACAGGGCAC+TGG | + | chr1.3:54547520-54547539 | MS.gene85559:CDS | 55.0% | |
| ATTGCCACCGTCCAACAACG+GGG | + | chr1.3:54547839-54547858 | MS.gene85559:CDS | 55.0% | |
| ATTGCCAGGGGAGTGATGCT+CGG | + | chr1.3:54546201-54546220 | MS.gene85559:CDS | 55.0% | |
| CATTGCCACCGTCCAACAAC+GGG | + | chr1.3:54547838-54547857 | MS.gene85559:CDS | 55.0% | |
| CCAGCAGCCGAATCACTGAA+CGG | + | chr1.3:54546264-54546283 | MS.gene85559:CDS | 55.0% | |
| CGCCATTGCGAGTTGTGACA+GGG | - | chr1.3:54548128-54548147 | None:intergenic | 55.0% | |
| CTGGTGGGATGTCAAGCATG+TGG | - | chr1.3:54546248-54546267 | None:intergenic | 55.0% | |
| GATGTGGTTGAGGGATGCAC+TGG | + | chr1.3:54546481-54546500 | MS.gene85559:CDS | 55.0% | |
| GTGGGATGTCAAGCATGTGG+AGG | - | chr1.3:54546245-54546264 | None:intergenic | 55.0% | |
| TCAGCTACGAGTTCACGGAC+AGG | - | chr1.3:54547674-54547693 | None:intergenic | 55.0% | |
| TCGCCATTGCGAGTTGTGAC+AGG | - | chr1.3:54548129-54548148 | None:intergenic | 55.0% | |
| TGATTGCAGCACCCCGTTGT+TGG | - | chr1.3:54547853-54547872 | None:intergenic | 55.0% | |
| TGCCCTGTTATGGTCCAGTC+TGG | - | chr1.3:54547519-54547538 | None:intergenic | 55.0% | |
| TGCTGCTGCAAACTGCAAGG+TGG | + | chr1.3:54546621-54546640 | MS.gene85559:intron | 55.0% | |
| TTGGGAGAGCTCGTGGAAAC+AGG | + | chr1.3:54546834-54546853 | MS.gene85559:intron | 55.0% | |
| ! | CTGGACCATAACAGGGCACT+GGG | + | chr1.3:54547521-54547540 | MS.gene85559:CDS | 55.0% |
| ! | TCAGTGATTCGGCTGCTGGT+GGG | - | chr1.3:54546263-54546282 | None:intergenic | 55.0% |
| ! | TTCAGTGATTCGGCTGCTGG+TGG | - | chr1.3:54546264-54546283 | None:intergenic | 55.0% |
| !! | CAGGGAACCTGGGTATCGAT+GGG | + | chr1.3:54548051-54548070 | MS.gene85559:intron | 55.0% |
| !! | GGCATTGGTGTTTGCTGGGT+TGG | - | chr1.3:54547441-54547460 | None:intergenic | 55.0% |
| !! | GTTCTTGTCACTGGTGCTGC+AGG | + | chr1.3:54545474-54545493 | MS.gene85559:CDS | 55.0% |
| !! | TCAGGGAACCTGGGTATCGA+TGG | + | chr1.3:54548050-54548069 | MS.gene85559:intron | 55.0% |
| AGACTGCTTGGGAGAGCTCG+TGG | + | chr1.3:54546827-54546846 | MS.gene85559:intron | 60.0% | |
| GTGGTCACAAGCAGCGCTAG+CGG | - | chr1.3:54547909-54547928 | None:intergenic | 60.0% | |
| TGCAGCACCCCGTTGTTGGA+CGG | - | chr1.3:54547849-54547868 | None:intergenic | 60.0% | |
| ! | CCGTTCAGTGATTCGGCTGC+TGG | - | chr1.3:54546267-54546286 | None:intergenic | 60.0% |
| AGCACCCCGTTGTTGGACGG+TGG | - | chr1.3:54547846-54547865 | None:intergenic | 65.0% | |
| GCATGTGGAGGATCACGGGC+TGG | - | chr1.3:54546233-54546252 | None:intergenic | 65.0% | |
| !! | GGAGGATCACGGGCTGGTCA+GGG | - | chr1.3:54546227-54546246 | None:intergenic | 65.0% |
| !! | TGGAGGATCACGGGCTGGTC+AGG | - | chr1.3:54546228-54546247 | None:intergenic | 65.0% |
| AGGGCCGAGCATCACTCCCC+TGG | - | chr1.3:54546208-54546227 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54545453 | 54548439 | 54545453 | ID=MS.gene85559 |
| chr1.3 | mRNA | 54545453 | 54548439 | 54545453 | ID=MS.gene85559.t1;Parent=MS.gene85559 |
| chr1.3 | exon | 54545453 | 54545495 | 54545453 | ID=MS.gene85559.t1.exon1;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54545453 | 54545495 | 54545453 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| chr1.3 | exon | 54546172 | 54546330 | 54546172 | ID=MS.gene85559.t1.exon2;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54546172 | 54546330 | 54546172 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| chr1.3 | exon | 54546464 | 54546639 | 54546464 | ID=MS.gene85559.t1.exon3;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54546464 | 54546639 | 54546464 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| chr1.3 | exon | 54547425 | 54547702 | 54547425 | ID=MS.gene85559.t1.exon4;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54547425 | 54547702 | 54547425 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| chr1.3 | exon | 54547823 | 54547958 | 54547823 | ID=MS.gene85559.t1.exon5;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54547823 | 54547958 | 54547823 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| chr1.3 | exon | 54548054 | 54548165 | 54548054 | ID=MS.gene85559.t1.exon6;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54548054 | 54548165 | 54548054 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| chr1.3 | exon | 54548345 | 54548439 | 54548345 | ID=MS.gene85559.t1.exon7;Parent=MS.gene85559.t1 |
| chr1.3 | CDS | 54548345 | 54548439 | 54548345 | ID=cds.MS.gene85559.t1;Parent=MS.gene85559.t1 |
| Gene Sequence |
| Protein sequence |
