AlfalfaGEDB | MS.gene85784

M. sativa cultivar XinJiangDaYe / MS.gene85784

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85784.t1	KEH25922.1	76.8	1198	245	6	1	1172	15	1205	0.00E+00	1181.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85784.t1	Q6JN46	35.5	1167	556	20	6	1158	17	1000	3.4e-52	208.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85784.t1	A0A072U8E0	76.8	1198	245	6	1	1172	15	1205	0.0e+00	1181.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050640	MS.gene85784	0.805353	1.39E-49	-1.69E-46
MS.gene054183	MS.gene85784	0.804946	1.69E-49	-1.69E-46
MS.gene058220	MS.gene85784	0.802325	5.92E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85784.t1	MTR_6g039180	80.017	1176	222	5	1	1171	18	1185	0.0	1831
MS.gene85784.t1	MTR_6g037750	77.713	1198	234	6	1	1172	15	1205	0.0	1810
MS.gene85784.t1	MTR_6g038730	76.405	1174	239	5	1	1172	16	1153	0.0	1716
MS.gene85784.t1	MTR_6g038700	72.453	1227	275	5	1	1172	18	1236	0.0	1694
MS.gene85784.t1	MTR_6g038940	73.645	1199	193	6	1	1172	18	1120	0.0	1635
MS.gene85784.t1	MTR_6g038670	71.332	1186	246	8	1	1171	15	1121	0.0	1605
MS.gene85784.t1	MTR_6g038910	76.168	1070	204	4	102	1167	48	1070	0.0	1565
MS.gene85784.t1	MTR_6g038910	29.012	941	440	33	74	874	120	972	2.70e-47	185
MS.gene85784.t1	MTR_6g039110	67.319	1175	281	9	1	1171	12	1087	0.0	1463
MS.gene85784.t1	MTR_6g038790	86.234	632	81	2	536	1167	1	626	0.0	1083

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85784.t1	AT2G34930	33.875	862	446	23	299	1099	104	902	1.36e-99	337
MS.gene85784.t1	AT2G34930	28.794	962	481	36	21	881	32	890	2.92e-65	239
MS.gene85784.t1	AT3G05660	32.456	798	443	28	390	1148	113	853	4.21e-75	268
MS.gene85784.t1	AT3G05660	29.211	849	455	31	22	826	30	776	1.87e-52	200
MS.gene85784.t1	AT1G74190	28.635	901	445	25	415	1162	105	960	5.61e-75	269
MS.gene85784.t1	AT1G74190	27.809	899	498	31	22	826	27	868	5.92e-50	192
MS.gene85784.t1	AT1G74190	27.950	483	263	17	105	543	439	880	7.69e-19	93.2
MS.gene85784.t1	AT2G32680	32.372	763	436	26	361	1103	122	824	9.35e-75	267
MS.gene85784.t1	AT2G32680	28.471	850	472	30	19	826	34	789	3.04e-45	177
MS.gene85784.t1	AT2G33060	32.737	727	403	23	432	1133	92	757	5.41e-74	263

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Find 205 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATTTAAAGAACGTA+AGG	0.555511	6.4:+13586909	None:intergenic
AAACTTAGTTCTCTCAGTTT+TGG	0.313081	6.4:+13587378	None:intergenic
AAAGTTGAATGCTTTGTAGA+TGG	0.390264	6.4:+13585513	None:intergenic
AAATAATAAATTGAAGGGTG+TGG	0.523569	6.4:-13586959	MS.gene85784:CDS
AACAATGTTTCTCATGTGTT+TGG	0.396075	6.4:-13588225	None:intergenic
AACTATCATCAAAAGAGTGT+TGG	0.498657	6.4:-13586090	MS.gene85784:CDS
AACTGCAAGCATTACTATTG+AGG	0.482917	6.4:-13585721	MS.gene85784:CDS
AACTTATGTTTGACAATGAC+TGG	0.422377	6.4:+13587082	None:intergenic
AACTTATGTTTGACACCCAC+TGG	0.430289	6.4:+13587235	None:intergenic
AAGATTATCTTCATAAGATG+AGG	0.592979	6.4:+13584986	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGAATGCTTTGTAGA+TGG	+	chr6.4:13587436-13587455	None:intergenic	30.0%
AACTTATGTTTGACAATGAC+TGG	+	chr6.4:13585867-13585886	None:intergenic	30.0%
AATGAGAATATTGAGAGATC+AGG	+	chr6.4:13586480-13586499	None:intergenic	30.0%
AATTATATCCCAGGTTTCTT+GGG	-	chr6.4:13585079-13585098	MS.gene85784:CDS	30.0%
AATTGAATGCATTCTTGACA+TGG	-	chr6.4:13587603-13587622	MS.gene85784:CDS	30.0%
ACAGTTAGTAATGCTAGATT+TGG	-	chr6.4:13587295-13587314	MS.gene85784:CDS	30.0%
ACATTGACATACCAGAAAAA+TGG	+	chr6.4:13586629-13586648	None:intergenic	30.0%
ATAATGTGAAGTTGAAATGG+CGG	+	chr6.4:13586711-13586730	None:intergenic	30.0%
ATATTTCAATCAAGTGCAGA+TGG	-	chr6.4:13588206-13588225	MS.gene85784:CDS	30.0%
ATCTAATAGTTGGTTGCAAA+TGG	-	chr6.4:13585534-13585553	MS.gene85784:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	13584725	13588243	13584725	ID=MS.gene85784
chr6.4	mRNA	13584725	13588243	13584725	ID=MS.gene85784.t1;Parent=MS.gene85784
chr6.4	exon	13584725	13588243	13584725	ID=MS.gene85784.t1.exon1;Parent=MS.gene85784.t1
chr6.4	CDS	13584725	13588243	13584725	ID=cds.MS.gene85784.t1;Parent=MS.gene85784.t1

Gene Sequence

>MS.gene85784

ATGTTTCTCATGTGTTTGGTGTTGCAAGCAGACCATCTTGTTTGTTCAAAAGAGGTTGTTAGATGCATTCAAAGTGAGAGGCAGGCACTTCTGCAATTCAAGGCTGGCATTGTTGATGAATTTGGCATGTTGTCATCTTGGACGACAGAAGATTGCTGCCAATGGTATGGAATTAGTTGCAACAACATCACTGGCCATGTACTTATGCTCGACCTTCATGGTGATTATAATTATTATGAATTCTATGGTTCTGATGATGACAATACATTTTATATCAGCGGTGATATCCACAAGTCACTGATAGAGTTGCAGCAATTAAAGTATTTGAAGCTCAGTGGAAATAATTTTGAAGGCAATTATATCCCAGGTTTCTTGGGATCTCTAAGAAACCTAAGATACCTTGATCTTTCACATTCTAATTTTTACGGACAAATTCCTGTTCAATTTGAGTATCTTTCACATTTGAAATACTTGAATCTTTCAGGGAATCTTCTAAATGGTTTGATTCCACATCAACTAGGAGATCTCTCCAACTTGCAATTTCTTGATCTCAGCTGGACTGGTTTGGAAGGAAGCATTCCATCTCAACTTGGAAATCTCTCCAACTTGCAATTTCTTGATCTCAGCTACAATGTTTTGAAAGGAAGCATTCCATCTCAACTTGGAAAGCTTACGAATCTACAAGAGCTTTATCTTGGAGGATTTAGTGCTCTAATAATTGACAGCGACGATCACAGTGGAGGTCAGTGGTTGTCTAATCTTACTTCTTTAACACATCTTCACATGTTGTCAATATCTAATCTTAATAAATCTAATAGTTGGTTGCAAATGGTTGGTAAGTTACCAAAACTGAGAGAACTAAGTTTAAGTAGTTGTGGCCTTTCTGATCATTTTATCCATTCATTGAGTCAATCCAAGTTCAACTTTTCCACTTCTCTTTCTATCCTTGATCTCTCTCAGAATAACTTTGCGTCATCTTCGATATTCCAGTGGGTGTCAAACATAAGTTCCAATCTTGTTGAGCTTGACCTTAGTTATAATCAAATGGTGGATTTCCCATCAAATCATTTTTCCTTTAGGATTCCAAAATTGAGAGAACTAAGATTATCTGATAACAACTTCACATCATTCATGATATTCCAGTCATTGTCAAACATAAGTTCCAATCTTGTTGAGCTTGACCTTTCTAACAACCACTTGGAGCCTCCCCTATCACATGGTTATGGCACAGTGATGAACTTGCTTCAGGTACTTGACATATCAAATAATAAATTGAAGGGTGTGGCATTTAAATCTTTCATGAGTTTATGCGCCTTACGTTCTTTAAATCTGTTTGCAAACAATTTCACAGAAGACCTTCAAACAATTCTTCAAAATTTGTCTAGTGGTTGTGTTAGAAACTCACTTCAAGTGTTATACCTCAGTTCTAATGGAATCACTGGAACACTACCCGACCTTTCCGCATTCACATCATTGAAAACATTGGATCTTTCTGATAATAAGCTGAGAGGAAAGATTCCTAAAGGTAGTAGCTTGCCATTTCAGTTGGAGAGTTTATCCATCAGTTACAACTCTTTGGAAGGGGGAATTCCAAAATCATTTTGGATGAATTCATGTAAGTTGAAATCAATGGACTTGTCCAATAACAGATTCAGTGGTGAGCTTCAAGTATTAATCCATCACTTATCTAAATGTGCAAGATACTCACTTCAACAATTAGATCTAAGAAGTAATCAAATCAATGGCACACTGCCTGATCTCTCAATATTCTCATTTTTGGAAATATTTGATATTTCTGAAAATAAGCTAAACGGGAAAGTAACTGAAGATATTCGATTTCCAACCAAACTAAGGAAACTAAAGATGGATTCGAACTCTTTGAATGGTGTGATCTCCGATGTCCATTTTTCTGGTATGTCAATGTTAAAGGAATTAGACTTGTCTGACAATTCACTAGCATTGACATTTACTGAAAATTGGGTCCCGCCATTTCAACTTCACATTATAGGATTGAGATCATGCAAACTTGGTCTTACATTTCCTAAATGGATTCAGACACAAAAATACTTGGATGATCTTGATATTTCTAATGCTGGAATTTCAGATAAGGTTCCAGAGTGGTTTTGGGCTAAACTATCATCAAAAGAGTGTTGGAGAATCAACATTTCATACAACAATCTCAAAGGATTAATTCCAAATCATCAAGTCAAAAATCATTGTTCTCTTTTATCTCTTTCATCAAATGAATTTGAAGGGCCTATTCCACCATTTCTACAAGGTTCTGCACTTATTGATTTGTCCAAAAACAAATTCTCAGATTCTCGCCAATTCCTATGTTCAAATGGTATAGATGAAATGTTAGGCCAGTTTGACCTTTCGAGTAATCAATTATCTGGACGAATTCCAGACTGTTGGAGCAATTTCAAGGCATTAGCTTATCTAGATTTGAGCCACAACAATTTTTCAGGAAAGATTCCTACTTCAATGGGATCACTTGTTAAACTGCAAGCATTACTATTGAGGAACAACATGCTAACAGAGGAGATCCCTTTCTCCTTAATGAACTGCACACAGTTAGTAATGCTAGATTTGGGAGAAAATAGATTAGAAGGACACATCCCTTATTGGATTGGAAGCGAATTAAAAGAGCTGCAAGTTTTAAGCTTACAAAGGAATCAATTCTTTGGAAGTTTACCATTGGAAGTCTGCCATCTACAAAGCATTCAACTTTTTGATCTCTCATTAAACAATCTATCTGGACGAATTCCCAAATGCATTAAAAATCTCACTTCAATGACTCAAAAAGCTTCATCACATGGTTTTACCAATCATTATTATGAAATAAGCCAAGGATATGTGCGTTATGGAGAACAATATGAATTGAATGCATTCTTGACATGGAAAGGTGTAGAACATGTGTTCAACAACAATGGATTGGATCTTCTAAAAGTCATAGATCTCTCAAGCAATCATTTTTCAGAAGAGATTCCACCTGAAATTGCAGATTTGATTCAATTGGTCTCATTGAATTTATCAAGAAACAACTTCATAGAGAAAATTCCATCAAATATTGGAAATCTAACCTCACTTGACTCTCTCGATTTGTCACGAAATAAGTTGCATGGTTCAATTCCTCCTAGTCTCTCTCATATCGACTGGCTTAGTGTGTTAGATCTGTCACATAATCAATTATCTGGAGAGATTCCAACGAGTACACAACTACAAAGTTTCAATGCCTCATCTTATGAAGATAATCTTGATCTTTGTGGTCCACCGCTTGTAAAATTGTGTGTTAAAGGGAAACCACCACATGAACCAAAAGTAGAAGTACAAGACGATGAAGATTTGCTTCTCAATCGTGGATTTTACATCAGTCTGACATTCGGATTTATCATAGGCTTCTGGGGAGTATTTGGCTCAATCCTAATCAAGCGTTCTTGGAGACATGCTTATTTCAGGTTCATGAACAATTTAGTGGATAATATTTCAATCAAGTGCAGATGGGGGCTCAAAGATTAA

Protein sequence

>MS.gene85784.t1

MFLMCLVLQADHLVCSKEVVRCIQSERQALLQFKAGIVDEFGMLSSWTTEDCCQWYGISCNNITGHVLMLDLHGDYNYYEFYGSDDDNTFYISGDIHKSLIELQQLKYLKLSGNNFEGNYIPGFLGSLRNLRYLDLSHSNFYGQIPVQFEYLSHLKYLNLSGNLLNGLIPHQLGDLSNLQFLDLSWTGLEGSIPSQLGNLSNLQFLDLSYNVLKGSIPSQLGKLTNLQELYLGGFSALIIDSDDHSGGQWLSNLTSLTHLHMLSISNLNKSNSWLQMVGKLPKLRELSLSSCGLSDHFIHSLSQSKFNFSTSLSILDLSQNNFASSSIFQWVSNISSNLVELDLSYNQMVDFPSNHFSFRIPKLRELRLSDNNFTSFMIFQSLSNISSNLVELDLSNNHLEPPLSHGYGTVMNLLQVLDISNNKLKGVAFKSFMSLCALRSLNLFANNFTEDLQTILQNLSSGCVRNSLQVLYLSSNGITGTLPDLSAFTSLKTLDLSDNKLRGKIPKGSSLPFQLESLSISYNSLEGGIPKSFWMNSCKLKSMDLSNNRFSGELQVLIHHLSKCARYSLQQLDLRSNQINGTLPDLSIFSFLEIFDISENKLNGKVTEDIRFPTKLRKLKMDSNSLNGVISDVHFSGMSMLKELDLSDNSLALTFTENWVPPFQLHIIGLRSCKLGLTFPKWIQTQKYLDDLDISNAGISDKVPEWFWAKLSSKECWRINISYNNLKGLIPNHQVKNHCSLLSLSSNEFEGPIPPFLQGSALIDLSKNKFSDSRQFLCSNGIDEMLGQFDLSSNQLSGRIPDCWSNFKALAYLDLSHNNFSGKIPTSMGSLVKLQALLLRNNMLTEEIPFSLMNCTQLVMLDLGENRLEGHIPYWIGSELKELQVLSLQRNQFFGSLPLEVCHLQSIQLFDLSLNNLSGRIPKCIKNLTSMTQKASSHGFTNHYYEISQGYVRYGEQYELNAFLTWKGVEHVFNNNGLDLLKVIDLSSNHFSEEIPPEIADLIQLVSLNLSRNNFIEKIPSNIGNLTSLDSLDLSRNKLHGSIPPSLSHIDWLSVLDLSHNQLSGEIPTSTQLQSFNASSYEDNLDLCGPPLVKLCVKGKPPHEPKVEVQDDEDLLLNRGFYISLTFGFIIGFWGVFGSILIKRSWRHAYFRFMNNLVDNISIKCRWGLKD