AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85943

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85943.t1 MTR_2g104500 82.105 285 38 4 1 282 1 275 5.21e-166 461
MS.gene85943.t1 MTR_2g104530 63.423 298 70 9 1 281 1 276 8.55e-116 334
MS.gene85943.t1 MTR_2g104550 43.046 302 143 11 1 278 15 311 1.47e-59 192
MS.gene85943.t1 MTR_2g104490 42.617 298 142 9 2 277 16 306 2.17e-58 189
MS.gene85943.t1 MTR_4g009540 43.277 238 124 4 50 279 97 331 1.39e-52 174
MS.gene85943.t1 MTR_2g104490 42.294 279 132 9 2 258 16 287 2.50e-51 170
MS.gene85943.t1 MTR_4g009110 42.324 241 126 3 50 279 112 350 5.45e-51 171
MS.gene85943.t1 MTR_8g009020 48.087 183 87 4 103 279 143 323 1.82e-44 154
MS.gene85943.t1 MTR_4g009540 41.935 217 115 4 50 258 97 310 1.05e-43 151
MS.gene85943.t1 MTR_2g104560 44.693 179 88 4 104 279 55 225 1.85e-41 143
MS.gene85943.t1 MTR_2g104590 43.678 174 77 3 101 274 67 219 3.12e-34 124
MS.gene85943.t1 MTR_5g014600 39.785 186 102 2 103 278 149 334 3.16e-34 127
MS.gene85943.t1 MTR_8g069740 35.185 270 145 8 9 257 5 265 1.98e-33 123
MS.gene85943.t1 MTR_5g014520 39.106 179 106 1 96 274 150 325 2.48e-33 124
MS.gene85943.t1 MTR_7g080780 37.021 235 124 5 54 279 97 316 8.28e-32 120
MS.gene85943.t1 MTR_7g080780 37.021 235 124 5 54 279 110 329 9.53e-32 120
MS.gene85943.t1 MTR_0250s0040 36.517 178 108 2 103 279 88 261 2.24e-31 117
MS.gene85943.t1 MTR_2g010450 36.364 187 112 3 89 274 166 346 3.27e-31 119
MS.gene85943.t1 MTR_5g014640 34.862 218 132 4 62 278 115 323 7.76e-31 117
MS.gene85943.t1 MTR_2g104650 35.789 285 141 9 8 274 4 264 8.71e-31 116
MS.gene85943.t1 MTR_0011s0260 37.640 178 106 3 103 279 183 356 2.38e-30 117
MS.gene85943.t1 MTR_6g047570 33.197 244 147 4 43 279 98 332 4.73e-30 115
MS.gene85943.t1 MTR_4g092700 36.628 172 106 1 103 274 158 326 5.18e-30 115
MS.gene85943.t1 MTR_0011s0210 35.028 177 112 1 103 279 183 356 1.08e-29 115
MS.gene85943.t1 MTR_0246s0020 34.746 236 129 7 67 279 142 375 1.74e-29 115
MS.gene85943.t1 MTR_4g097940 37.222 180 106 2 99 277 151 324 3.05e-28 110
MS.gene85943.t1 MTR_4g066460 35.149 202 113 5 83 279 137 325 3.33e-28 110
MS.gene85943.t1 MTR_8g009010 41.040 173 62 3 103 274 134 267 3.58e-28 110
MS.gene85943.t1 MTR_5g014560 35.204 196 119 2 89 279 112 304 3.87e-27 107
MS.gene85943.t1 MTR_4g067010 34.715 193 118 4 87 279 133 317 3.97e-27 107
MS.gene85943.t1 MTR_0246s0050 30.603 232 145 4 49 279 101 317 1.35e-26 106
MS.gene85943.t1 MTR_4g098035 30.603 232 145 4 49 279 122 338 1.66e-26 106
MS.gene85943.t1 MTR_4g009510 38.323 167 84 4 114 277 53 203 3.53e-26 102
MS.gene85943.t1 MTR_7g050350 41.216 148 62 3 133 274 2 130 6.64e-26 99.8
MS.gene85943.t1 MTR_7g451650 41.216 148 62 3 133 274 2 130 6.64e-26 99.8
MS.gene85943.t1 MTR_7g451650 41.333 150 63 3 131 274 62 192 7.48e-26 101
MS.gene85943.t1 MTR_4g097920 36.111 180 108 2 99 277 136 309 2.48e-25 102
MS.gene85943.t1 MTR_4g097920 36.111 180 108 2 99 277 151 324 2.87e-25 102
MS.gene85943.t1 MTR_0246s0020 34.101 217 118 6 67 260 142 356 4.82e-25 102
MS.gene85943.t1 MTR_4g097950 35.079 191 100 3 103 279 70 250 2.19e-23 96.3
MS.gene85943.t1 MTR_4g009420 37.267 161 79 3 114 274 54 192 8.01e-23 93.6
MS.gene85943.t1 MTR_7g451650 42.029 138 55 3 131 262 62 180 2.86e-22 91.7
MS.gene85943.t1 MTR_4g066380 33.668 199 115 3 89 279 133 322 5.43e-22 94.0
MS.gene85943.t1 MTR_4g009420 37.107 159 73 4 114 267 54 190 3.26e-19 84.0
MS.gene85943.t1 MTR_5g014550 34.615 130 74 2 132 257 53 175 6.00e-14 69.3
MS.gene85943.t1 MTR_8g098275 24.883 213 123 6 78 258 279 486 7.33e-12 65.9
MS.gene85943.t1 MTR_8g098275 24.883 213 123 6 78 258 372 579 9.06e-12 65.5
MS.gene85943.t1 MTR_1g072320 24.615 195 119 5 101 277 468 652 9.21e-12 65.5
MS.gene85943.t1 MTR_8g098275 24.883 213 123 6 78 258 215 422 1.14e-11 65.1
MS.gene85943.t1 MTR_6g047550 31.852 135 79 3 43 170 112 240 3.02e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85943.t1 AT4G37850 39.205 176 103 3 103 277 152 324 5.23e-31 118
MS.gene85943.t1 AT4G37850 39.205 176 103 3 103 277 152 324 5.23e-31 118
MS.gene85943.t1 AT2G22760 37.356 174 106 3 103 274 119 291 1.03e-29 114
MS.gene85943.t1 AT2G22760 36.943 157 97 2 103 258 119 274 1.06e-25 103
MS.gene85943.t1 AT2G22770 34.783 184 108 2 103 274 132 315 1.09e-25 103
MS.gene85943.t1 AT2G22750 34.239 184 96 3 103 273 126 297 8.86e-21 90.1
MS.gene85943.t1 AT2G22750 34.239 184 96 3 103 273 150 321 1.39e-20 90.1
MS.gene85943.t1 AT2G22750 34.239 184 96 3 103 273 154 325 1.44e-20 90.1
MS.gene85943.t1 AT2G22750 34.239 184 95 4 103 273 126 296 2.59e-19 86.3
MS.gene85943.t1 AT2G22750 34.239 184 95 4 103 273 154 324 3.70e-19 86.3
MS.gene85943.t1 AT4G09820 35.766 137 54 5 102 234 362 468 2.34e-13 70.1
MS.gene85943.t1 AT1G63650 29.730 148 89 2 103 235 405 552 2.05e-12 67.4
MS.gene85943.t1 AT1G63650 29.730 148 89 2 103 235 405 552 2.05e-12 67.4
MS.gene85943.t1 AT1G63650 29.730 148 89 2 103 235 405 552 2.05e-12 67.4
MS.gene85943.t1 AT5G41315 27.329 161 97 3 95 235 438 598 9.39e-12 65.5
MS.gene85943.t1 AT5G41315 27.329 161 97 3 95 235 441 601 9.41e-12 65.5
MS.gene85943.t1 AT5G41315 27.329 161 97 3 95 235 433 593 9.54e-12 65.5

Find 51 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTCCTTCACTCGTTTC+TGG 0.173101 2.1:+1183985 None:intergenic
TAGAGCTTGCATTATCTCTT+TGG 0.266677 2.1:-1184885 MS.gene85943:CDS
ATCAATTGTGAGAAGGAAAA+TGG 0.286777 2.1:-1183789 MS.gene85943:CDS
ACAACGTGGTGGTTTGGATT+TGG 0.302005 2.1:+1184826 None:intergenic
CTGGAGTTGCTCCACGTAAT+TGG 0.302982 2.1:+1184004 None:intergenic
TGGCATTCAACACAAAATAT+TGG 0.325928 2.1:-1183769 MS.gene85943:CDS
CAAAATGACACTGCTGGATT+TGG 0.327464 2.1:-1182983 MS.gene85943:CDS
AGAGATCTAATAATTGCTTT+TGG 0.331987 2.1:+1184761 None:intergenic
ATGAATCTTGACAATTATCT+TGG 0.345786 2.1:-1183873 MS.gene85943:CDS
AGACTTCCTTTGTGACTTCA+TGG 0.350365 2.1:-1185002 MS.gene85943:CDS
GCAATGGCAGCTCCAGCTAC+TGG 0.359273 2.1:+1184974 None:intergenic
GACAAAGCTTCTATCGTTGC+TGG 0.389114 2.1:-1184032 MS.gene85943:CDS
CCGTTTGGCAATTCAACTCT+TGG 0.391384 2.1:-1183699 MS.gene85943:CDS
ACATCAGGAAGCAATTCATT+TGG 0.411022 2.1:+1183849 None:intergenic
ATCATGTTGCATCTTTCAAC+AGG 0.411699 2.1:+1182941 None:intergenic
TTCTTATTGAGAAGTATCAT+TGG 0.433422 2.1:+1183933 None:intergenic
AATGACACTGCTGGATTTGG+CGG 0.437820 2.1:-1182980 MS.gene85943:CDS
GACACTTTCACTTTGACATC+AGG 0.450201 2.1:+1183834 None:intergenic
TGGATTTGGCGGACAACATA+AGG 0.452584 2.1:-1182969 MS.gene85943:CDS
TGTGGGACAACGTGGTGGTT+TGG 0.461838 2.1:+1184820 None:intergenic
AGCACTAGCACATTGCCGTT+TGG 0.467143 2.1:-1183714 MS.gene85943:CDS
TTCATGGCACAGCCAGTAGC+TGG 0.474815 2.1:-1184986 MS.gene85943:CDS
ACGCAATGGGAGAGAGGAAA+AGG 0.480162 2.1:-1184733 MS.gene85943:CDS
TTGGATTTGGACATCACAGC+TGG 0.517868 2.1:+1184839 None:intergenic
GTGGACGGAGGAAGAAGCTC+CGG 0.531427 2.1:+1184914 None:intergenic
AATGCAAGCTCTAGAGGATG+TGG 0.535694 2.1:+1184895 None:intergenic
AGATCTCTAGATCACGCAAT+GGG 0.542864 2.1:-1184746 MS.gene85943:CDS
AAAGGAAGTCTTCATCTTCG+TGG 0.550705 2.1:+1185014 None:intergenic
AAGATTCATTTCACTAGATG+TGG 0.558723 2.1:+1183887 None:intergenic
AGAGATAATGCAAGCTCTAG+AGG 0.565903 2.1:+1184889 None:intergenic
ACGCTCGGTAGCAGCAGCAA+TGG 0.570572 2.1:+1184958 None:intergenic
CCAAGAGTTGAATTGCCAAA+CGG 0.575048 2.1:+1183699 None:intergenic
TGTAGTCTCTGATGAGTCAC+CGG 0.575944 2.1:-1184933 MS.gene85943:CDS
ATTAGTACCTTGTTTGAGCG+AGG 0.577779 2.1:+1184665 None:intergenic
AGCTGGTAACAGTATCTTCG+CGG 0.585382 2.1:+1184856 None:intergenic
ATCAGAGACTACAATACGCT+CGG 0.591680 2.1:+1184943 None:intergenic
CATTTACATCAATTGTGAGA+AGG 0.601314 2.1:-1183796 MS.gene85943:CDS
AAACGGCAATGTGCTAGTGC+TGG 0.603776 2.1:+1183716 None:intergenic
TGCATACAAAATGACACTGC+TGG 0.605032 2.1:-1182989 MS.gene85943:CDS
TATTATTCCTCGCTCAAACA+AGG 0.615369 2.1:-1184672 MS.gene85943:intron
TAGATCACGCAATGGGAGAG+AGG 0.615416 2.1:-1184739 MS.gene85943:CDS
TAGATCTCTAGATCACGCAA+TGG 0.625523 2.1:-1184747 MS.gene85943:CDS
TGGCATAACTATCATCGCCA+AGG 0.626059 2.1:-1183679 MS.gene85943:intron
GAAGTACAACAAAACAAGAG+AGG 0.647529 2.1:-1183963 MS.gene85943:CDS
TGCTGGCGCAACCAATTACG+TGG 0.650808 2.1:-1184015 MS.gene85943:CDS
GACTTCTGAGAATCGAAACA+TGG 0.657951 2.1:-1184786 MS.gene85943:CDS
TGATGTCAAAGTGAAAGTGT+CGG 0.659461 2.1:-1183832 MS.gene85943:CDS
GCAACTCCAGAAACGAGTGA+AGG 0.675689 2.1:-1183991 MS.gene85943:CDS
CAAGCTCTAGAGGATGTGGA+CGG 0.686043 2.1:+1184899 None:intergenic
GCTCTAGAGGATGTGGACGG+AGG 0.694196 2.1:+1184902 None:intergenic
GCTGTGCCATGAAGTCACAA+AGG 0.700598 2.1:+1184996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAATACATTAATAATTT+GGG + chr2.1:1183916-1183935 None:intergenic 10.0%
!! TTGTAAATACATTAATAATT+TGG + chr2.1:1183917-1183936 None:intergenic 10.0%
!!! TTATTTAATCATTTTTTGAT+AGG + chr2.1:1184736-1184755 None:intergenic 10.0%
!! TTCAATAGTTAATGAAAATT+TGG + chr2.1:1184341-1184360 None:intergenic 15.0%
!!! ATTATTTTTTTGATAAGCAA+AGG + chr2.1:1183379-1183398 None:intergenic 15.0%
!!! CCATTTTAAAACATTTTTTA+AGG + chr2.1:1183768-1183787 None:intergenic 15.0%
!!! CCTTAAAAAATGTTTTAAAA+TGG - chr2.1:1183765-1183784 MS.gene85943:CDS 15.0%
!!! TGAAATGAATATGTTTTTAA+GGG - chr2.1:1184357-1184376 MS.gene85943:intron 15.0%
!!! TTGAAATGAATATGTTTTTA+AGG - chr2.1:1184356-1184375 MS.gene85943:intron 15.0%
!! AACAACTTTGTAAAACAAAA+TGG + chr2.1:1184656-1184675 None:intergenic 20.0%
!! TAGAAAATAAAGACCAATAT+AGG - chr2.1:1183742-1183761 MS.gene85943:CDS 20.0%
!! TTAATCATATATACCACATA+TGG + chr2.1:1184707-1184726 None:intergenic 20.0%
!! TTATTGTGAAGTTTGTAATT+AGG - chr2.1:1183465-1183484 MS.gene85943:intron 20.0%
!!! TATTTATTGCATTAACTTGA+TGG - chr2.1:1184958-1184977 MS.gene85943:CDS 20.0%
!!! TGGCATTTATATTAGTTTAT+AGG + chr2.1:1184687-1184706 None:intergenic 20.0%
! ACTAATATAAATGCCATATG+TGG - chr2.1:1184691-1184710 MS.gene85943:CDS 25.0%
! ATGAATCTTGACAATTATCT+TGG - chr2.1:1184112-1184131 MS.gene85943:intron 25.0%
! CTCAATAAGAAAAATTCTTG+TGG - chr2.1:1184064-1184083 MS.gene85943:intron 25.0%
! TAACATAATACCATTCTTCA+GGG - chr2.1:1183557-1183576 MS.gene85943:intron 25.0%
! TTAACATAATACCATTCTTC+AGG - chr2.1:1183556-1183575 MS.gene85943:intron 25.0%
!! AGAGATCTAATAATTGCTTT+TGG + chr2.1:1183227-1183246 None:intergenic 25.0%
!! TAATTTGGGATGTCTAATAT+CGG + chr2.1:1183902-1183921 None:intergenic 25.0%
!!! ACATTTTTTAAGGCCTATAT+TGG + chr2.1:1183758-1183777 None:intergenic 25.0%
!!! TTCTTATTGAGAAGTATCAT+TGG + chr2.1:1184055-1184074 None:intergenic 25.0%
AAAACATCTCTTCAAATCGT+TGG - chr2.1:1183517-1183536 MS.gene85943:intron 30.0%
AAGATTCATTTCACTAGATG+TGG + chr2.1:1184101-1184120 None:intergenic 30.0%
AATGAGACCTAGTAATTTGA+AGG - chr2.1:1184523-1184542 MS.gene85943:intron 30.0%
AGTAGAATCTACCTTTAAAC+CGG - chr2.1:1183875-1183894 MS.gene85943:CDS 30.0%
ATCAATTGTGAGAAGGAAAA+TGG - chr2.1:1184196-1184215 MS.gene85943:intron 30.0%
CATTTACATCAATTGTGAGA+AGG - chr2.1:1184189-1184208 MS.gene85943:intron 30.0%
CTAGTAATTTGAAGGTTAGT+CGG - chr2.1:1184531-1184550 MS.gene85943:intron 30.0%
GAATGAATGTTGAGAAGTTT+AGG - chr2.1:1184390-1184409 MS.gene85943:intron 30.0%
GTATCAACAACAAATGTTGA+GGG + chr2.1:1183608-1183627 None:intergenic 30.0%
GTGCTACAATAAAAGAATAG+CGG + chr2.1:1184811-1184830 None:intergenic 30.0%
TGGCATTCAACACAAAATAT+TGG - chr2.1:1184216-1184235 MS.gene85943:intron 30.0%
! TAGTAATTTGAAGGTTAGTC+GGG - chr2.1:1184532-1184551 MS.gene85943:intron 30.0%
!! TAACTTGATGGATTACAGAT+GGG - chr2.1:1184970-1184989 MS.gene85943:CDS 30.0%
!! TTAACTTGATGGATTACAGA+TGG - chr2.1:1184969-1184988 MS.gene85943:CDS 30.0%
!! TTGTTAACTCGAGTTTTTAG+TGG - chr2.1:1184500-1184519 MS.gene85943:intron 30.0%
!!! AGAAGTCATCATCTTTTTTG+TGG + chr2.1:1183186-1183205 None:intergenic 30.0%
!!! GAAGTCATCATCTTTTTTGT+GGG + chr2.1:1183185-1183204 None:intergenic 30.0%
!!! TTTTTTGATAAGCAAAGGCA+AGG + chr2.1:1183374-1183393 None:intergenic 30.0%
ACAATAAAAGAATAGCGGTC+CGG + chr2.1:1184806-1184825 None:intergenic 35.0%
ACATCAGGAAGCAATTCATT+TGG + chr2.1:1184139-1184158 None:intergenic 35.0%
CACCATATGACAGATTATTC+AGG + chr2.1:1184613-1184632 None:intergenic 35.0%
CATATTCAAACCCTGAAGAA+TGG + chr2.1:1183570-1183589 None:intergenic 35.0%
CGACTAACCTTCAAATTACT+AGG + chr2.1:1184533-1184552 None:intergenic 35.0%
CTCCTGAATAATCTGTCATA+TGG - chr2.1:1184608-1184627 MS.gene85943:intron 35.0%
CTGAATAATCTGTCATATGG+TGG - chr2.1:1184611-1184630 MS.gene85943:intron 35.0%
GAAGTACAACAAAACAAGAG+AGG - chr2.1:1184022-1184041 MS.gene85943:CDS 35.0%
GGTATCAACAACAAATGTTG+AGG + chr2.1:1183609-1183628 None:intergenic 35.0%
GTAAAACAAAATGGCTCAAG+TGG + chr2.1:1184647-1184666 None:intergenic 35.0%
TAGAGCTTGCATTATCTCTT+TGG - chr2.1:1183100-1183119 MS.gene85943:intron 35.0%
TATTATTCCTCGCTCAAACA+AGG - chr2.1:1183313-1183332 MS.gene85943:intron 35.0%
! TGATGTCAAAGTGAAAGTGT+CGG - chr2.1:1184153-1184172 MS.gene85943:intron 35.0%
!! AATGAGTGTTGAGTTTGGAA+GGG + chr2.1:1183651-1183670 None:intergenic 35.0%
AAAGGAAGTCTTCATCTTCG+TGG + chr2.1:1182974-1182993 None:intergenic 40.0%
ACTACTTTCCCGAAATCATC+CGG - chr2.1:1184784-1184803 MS.gene85943:CDS 40.0%
AGACTTCCTTTGTGACTTCA+TGG - chr2.1:1182983-1183002 MS.gene85943:CDS 40.0%
AGATCTCTAGATCACGCAAT+GGG - chr2.1:1183239-1183258 MS.gene85943:intron 40.0%
ATCAGAGACTACAATACGCT+CGG + chr2.1:1183045-1183064 None:intergenic 40.0%
ATCGCGAACATAAAATGCAG+TGG + chr2.1:1184884-1184903 None:intergenic 40.0%
CAAAATGACACTGCTGGATT+TGG - chr2.1:1185002-1185021 MS.gene85943:CDS 40.0%
CCAAGAGTTGAATTGCCAAA+CGG + chr2.1:1184289-1184308 None:intergenic 40.0%
CTAATATCGGTCCGGTTTAA+AGG + chr2.1:1183889-1183908 None:intergenic 40.0%
GACACTTTCACTTTGACATC+AGG + chr2.1:1184154-1184173 None:intergenic 40.0%
TAGATCTCTAGATCACGCAA+TGG - chr2.1:1183238-1183257 MS.gene85943:intron 40.0%
TGCATACAAAATGACACTGC+TGG - chr2.1:1184996-1185015 MS.gene85943:CDS 40.0%
! AGAGATAATGCAAGCTCTAG+AGG + chr2.1:1183099-1183118 None:intergenic 40.0%
! ATTAGTACCTTGTTTGAGCG+AGG + chr2.1:1183323-1183342 None:intergenic 40.0%
! GACTTCTGAGAATCGAAACA+TGG - chr2.1:1183199-1183218 MS.gene85943:intron 40.0%
! TAATTTGAAGGTTAGTCGGG+AGG - chr2.1:1184535-1184554 MS.gene85943:intron 40.0%
!! AAATTTGGTGATGCGAACCT+TGG + chr2.1:1184326-1184345 None:intergenic 40.0%
!! CAATGAGTGTTGAGTTTGGA+AGG + chr2.1:1183652-1183671 None:intergenic 40.0%
!! CTTGCAATGAGTGTTGAGTT+TGG + chr2.1:1183656-1183675 None:intergenic 40.0%
!!! ATCTTTTTTGTGGGACAACG+TGG + chr2.1:1183176-1183195 None:intergenic 40.0%
AAGGGAAGAATGAGGAGGTT+TGG + chr2.1:1183633-1183652 None:intergenic 45.0%
AATAGCGGTCCGGATGATTT+CGG + chr2.1:1184796-1184815 None:intergenic 45.0%
AATGACACTGCTGGATTTGG+CGG - chr2.1:1185005-1185024 MS.gene85943:CDS 45.0%
AGCTGGTAACAGTATCTTCG+CGG + chr2.1:1183132-1183151 None:intergenic 45.0%
CCGTTTGGCAATTCAACTCT+TGG - chr2.1:1184286-1184305 MS.gene85943:intron 45.0%
CTAACTCCTTCACTCGTTTC+TGG + chr2.1:1184003-1184022 None:intergenic 45.0%
GACAAAGCTTCTATCGTTGC+TGG - chr2.1:1183953-1183972 MS.gene85943:CDS 45.0%
GAGTTTGGAAGGGAAGAATG+AGG + chr2.1:1183641-1183660 None:intergenic 45.0%
GCGAACATAAAATGCAGTGG+TGG + chr2.1:1184881-1184900 None:intergenic 45.0%
TGGCATAACTATCATCGCCA+AGG - chr2.1:1184306-1184325 MS.gene85943:intron 45.0%
TGGGATGTCTAATATCGGTC+CGG + chr2.1:1183897-1183916 None:intergenic 45.0%
TGTAGTCTCTGATGAGTCAC+CGG - chr2.1:1183052-1183071 MS.gene85943:intron 45.0%
TTGGATTTGGACATCACAGC+TGG + chr2.1:1183149-1183168 None:intergenic 45.0%
TTTGGAAGGGAAGAATGAGG+AGG + chr2.1:1183638-1183657 None:intergenic 45.0%
! ACAACGTGGTGGTTTGGATT+TGG + chr2.1:1183162-1183181 None:intergenic 45.0%
! TGGATTTGGCGGACAACATA+AGG - chr2.1:1185016-1185035 MS.gene85943:CDS 45.0%
!! AATGCAAGCTCTAGAGGATG+TGG + chr2.1:1183093-1183112 None:intergenic 45.0%
!!! TTTTTTGTGGGACAACGTGG+TGG + chr2.1:1183173-1183192 None:intergenic 45.0%
!! AAAAAAAAAAAACATAAAAT+AGG + chr2.1:1184854-1184873 None:intergenic 5.0%
!! AAAAATGATTAAATAATTAA+AGG - chr2.1:1184740-1184759 MS.gene85943:CDS 5.0%
AAACGGCAATGTGCTAGTGC+TGG + chr2.1:1184272-1184291 None:intergenic 50.0%
AATAGGACCCTTGCCATGCA+TGG + chr2.1:1184837-1184856 None:intergenic 50.0%
ACGCAATGGGAGAGAGGAAA+AGG - chr2.1:1183252-1183271 MS.gene85943:intron 50.0%
AGCACTAGCACATTGCCGTT+TGG - chr2.1:1184271-1184290 MS.gene85943:intron 50.0%
ATAGCGGTCCGGATGATTTC+GGG + chr2.1:1184795-1184814 None:intergenic 50.0%
ATAGGACCCTTGCCATGCAT+GGG + chr2.1:1184836-1184855 None:intergenic 50.0%
ATTGTAGCACCTCCCATGCA+TGG - chr2.1:1184821-1184840 MS.gene85943:CDS 50.0%
CTGGAGTTGCTCCACGTAAT+TGG + chr2.1:1183984-1184003 None:intergenic 50.0%
GCAACTCCAGAAACGAGTGA+AGG - chr2.1:1183994-1184013 MS.gene85943:CDS 50.0%
GCTGTGCCATGAAGTCACAA+AGG + chr2.1:1182992-1183011 None:intergenic 50.0%
GGAAGAATGAGGAGGTTTGG+TGG + chr2.1:1183630-1183649 None:intergenic 50.0%
TAGATCACGCAATGGGAGAG+AGG - chr2.1:1183246-1183265 MS.gene85943:intron 50.0%
!! CAAGCTCTAGAGGATGTGGA+CGG + chr2.1:1183089-1183108 None:intergenic 50.0%
TGCTGGCGCAACCAATTACG+TGG - chr2.1:1183970-1183989 MS.gene85943:CDS 55.0%
TGTGGGACAACGTGGTGGTT+TGG + chr2.1:1183168-1183187 None:intergenic 55.0%
TTCATGGCACAGCCAGTAGC+TGG - chr2.1:1182999-1183018 MS.gene85943:CDS 55.0%
ACGCTCGGTAGCAGCAGCAA+TGG + chr2.1:1183030-1183049 None:intergenic 60.0%
AGCACCTCCCATGCATGGCA+AGG - chr2.1:1184826-1184845 MS.gene85943:CDS 60.0%
GCAATGGCAGCTCCAGCTAC+TGG + chr2.1:1183014-1183033 None:intergenic 60.0%
GCACCTCCCATGCATGGCAA+GGG - chr2.1:1184827-1184846 MS.gene85943:CDS 60.0%
GTGGACGGAGGAAGAAGCTC+CGG + chr2.1:1183074-1183093 None:intergenic 60.0%
!! GCTCTAGAGGATGTGGACGG+AGG + chr2.1:1183086-1183105 None:intergenic 60.0%
GGACCCTTGCCATGCATGGG+AGG + chr2.1:1184833-1184852 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 1182942 1185065 1182942 ID=MS.gene85943
chr2.1 mRNA 1182942 1185065 1182942 ID=MS.gene85943.t1;Parent=MS.gene85943
chr2.1 exon 1184673 1185065 1184673 ID=MS.gene85943.t1.exon1;Parent=MS.gene85943.t1
chr2.1 CDS 1184673 1185065 1184673 ID=cds.MS.gene85943.t1;Parent=MS.gene85943.t1
chr2.1 exon 1183680 1184057 1183680 ID=MS.gene85943.t1.exon2;Parent=MS.gene85943.t1
chr2.1 CDS 1183680 1184057 1183680 ID=cds.MS.gene85943.t1;Parent=MS.gene85943.t1
chr2.1 exon 1182942 1183019 1182942 ID=MS.gene85943.t1.exon3;Parent=MS.gene85943.t1
chr2.1 CDS 1182942 1183019 1182942 ID=cds.MS.gene85943.t1;Parent=MS.gene85943.t1
Gene Sequence

>MS.gene85943

ATGGATGTGGAATATTTGTTAGAGATGTGCCACGAAGATGAAGACTTCCTTTGTGACTTCATGGCACAGCCAGTAGCTGGAGCTGCCATTGCTGCTGCTACCGAGCGTATTGTAGTCTCTGATGAGTCACCGGAGCTTCTTCCTCCGTCCACATCCTCTAGAGCTTGCATTATCTCTTTGGATAATTCCGCGAAGATACTGTTACCAGCTGTGATGTCCAAATCCAAACCACCACGTTGTCCCACAAAAAAGATGATGACTTCTGAGAATCGAAACATGGAACCAAAAGCAATTATTAGATCTCTAGATCACGCAATGGGAGAGAGGAAAAGGAGACTTGAACTTGCACACAAATTCATAGAGCTTTCAGCTATTATTCCTCGCTCAAACAAGGTACTAATATTTTCACAAATTATTTACTCATTTATTCCTTGCCTTTGCTTATCAAAAAAATAATATGAAATCAGCAAACAGATGAACTTGTTATGAGATAAATACTATTCTCAGCTTAGTTTGTTAGATTTTATTGTGAAGTTTGTAATTAGGAGAACTAAGTTTGTTAGATCTGTATGAACAAAACATCTCTTCAAATCGTTGGTTGATGAACAAAATCGTTAACATAATACCATTCTTCAGGGTTTGAATATGTTGTTGTTAACTGAACCCTCAACATTTGTTGTTGATACCACCAAACCTCCTCATTCTTCCCTTCCAAACTCAACACTCATTGCAAGAAAAATTTGAAAAATATATTTCTTTGACAAAAATTTGAAAAATATGTTAAAAAAAATTGTTTAGTATAGAAAATAAAGACCAATATAGGCCTTAAAAAATGTTTTAAAATGGACTTTTATTAATTTTATTTAAAAAATGAATTTTATGATTAAAAAAAGTGTAGAACAAAAACAAAATTCTATTAAAATTAATTTAAAAAGTAGAATCTACCTTTAAACCGGACCGATATTAGACATCCCAAATTATTAATGTATTTACAATTTTTTTGTATAGACAGACAAAGCTTCTATCGTTGCTGGCGCAACCAATTACGTGGAGCAACTCCAGAAACGAGTGAAGGAGTTAGAAGTACAACAAAACAAGAGAGGTAAAGAACCAATGATACTTCTCAATAAGAAAAATTCTTGTGGAGTTTCACGTACCACATCTAGTGAAATGAATCTTGACAATTATCTTGGACCAAATGAATTGCTTCCTGATGTCAAAGTGAAAGTGTCGGAGAATAATATACTCATTTACATCAATTGTGAGAAGGAAAATGGCATTCAACACAAAATATTGGACATGCTTCAAAATCTTCATTTGTTTGTCACCAGCACTAGCACATTGCCGTTTGGCAATTCAACTCTTGGCATAACTATCATCGCCAAGGTTCGCATCACCAAATTTTCATTAACTATTGAAATGAATATGTTTTTAAGGGAAATGTTGTTGAATGAATGTTGAGAAGTTTAGGATGTTTAAATATCATTTTTTTTTACAAGTAATTAATATAATTGTTTTCATGAAAATAGTTTAAATATAGTCATCGTTAATTTTATTTTTGTTAACTCGAGTTTTTAGTGGAATGAGACCTAGTAATTTGAAGGTTAGTCGGGAGGTTAGTAAAGTTTAGCTAAAGATTGTTCTATTTAGTTATCAAACTCAAATTCTCCTGAATAATCTGTCATATGGTGGAGTTAATTAACCACTTGAGCCATTTTGTTTTACAAAGTTGTTAAGTTATTCCTATAAACTAATATAAATGCCATATGTGGTATATATGATTAATTAATTCCTATCAAAAAATGATTAAATAATTAAAGGATTATGCTGTTTAAAGTGAAAACTACTTTCCCGAAATCATCCGGACCGCTATTCTTTTATTGTAGCACCTCCCATGCATGGCAAGGGTCCTATTTTATGTTTTTTTTTTTTTTTGCCACCACTGCATTTTATGTTCGCGATATATTCTTGAGAAACTTGCTCGCGACAAATAGCATTGTCGATAATTAAACAATGTATTTATTGCATTAACTTGATGGATTACAGATGGGTGATGCATACAAAATGACACTGCTGGATTTGGCGGACAACATAAGGCAATTCCTGTTGAAAGATGCAACATGA
Protein sequence

>MS.gene85943.t1

MDVEYLLEMCHEDEDFLCDFMAQPVAGAAIAAATERIVVSDESPELLPPSTSSRACIISLDNSAKILLPAVMSKSKPPRCPTKKMMTSENRNMEPKAIIRSLDHAMGERKRRLELAHKFIELSAIIPRSNKTDKASIVAGATNYVEQLQKRVKELEVQQNKRGKEPMILLNKKNSCGVSRTTSSEMNLDNYLGPNELLPDVKVKVSENNILIYINCEKENGIQHKILDMLQNLHLFVTSTSTLPFGNSTLGITIIAKMGDAYKMTLLDLADNIRQFLLKDAT