AlfalfaGEDB | MS.gene86332

M. sativa cultivar XinJiangDaYe / MS.gene86332

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030247 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07645.18 PF07714.20 PF12947.10 PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86332.t1	RHN76863.1	88.7	753	82	2	1	750	9	761	0.00E+00	1355.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86332.t1	Q9LMN7	44.5	759	377	20	6	750	5	733	4.1e-160	566.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86332.t1	A0A396JKP2	88.7	753	82	2	1	750	9	761	0.0e+00	1355.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049409	MS.gene86332	0.819996	8.66E-53	-1.69E-46
MS.gene050780	MS.gene86332	0.807882	4.07E-50	-1.69E-46
MS.gene051744	MS.gene86332	0.804861	1.76E-49	-1.69E-46
MS.gene053641	MS.gene86332	0.811108	8.26E-51	-1.69E-46
MS.gene058477	MS.gene86332	0.828959	6.73E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene86332.t1	MTR_1g010220	82.517	715	113	4	1	713	5	709	1199
MS.gene86332.t1	MTR_1g027580	62.184	751	258	12	7	750	13	744	916
MS.gene86332.t1	MTR_1g027570	61.406	754	267	11	2	750	10	744	911
MS.gene86332.t1	MTR_1g027660	61.694	744	256	13	12	750	2	721	892
MS.gene86332.t1	MTR_1g010260	61.719	768	224	20	5	750	12	731	876
MS.gene86332.t1	MTR_1g027640	59.049	757	286	12	1	750	10	749	867
MS.gene86332.t1	MTR_1g027600	58.870	761	279	12	1	750	10	747	858
MS.gene86332.t1	MTR_1g027490	60.640	719	253	11	25	734	15	712	850
MS.gene86332.t1	MTR_1g010240	54.286	735	193	20	31	750	39	645	691
MS.gene86332.t1	MTR_1g010250	92.476	319	24	0	432	750	309	627	607

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86332.t1	AT1G21230	44.532	759	377	20	6	750	5	733	0.0	582
MS.gene86332.t1	AT1G21270	42.801	757	391	21	6	750	6	732	0.0	550
MS.gene86332.t1	AT1G21210	40.849	754	402	20	14	750	12	738	0.0	542
MS.gene86332.t1	AT1G21240	41.601	762	393	21	11	750	10	741	0.0	541
MS.gene86332.t1	AT1G21250	42.181	761	393	23	6	750	6	735	0.0	541
MS.gene86332.t1	AT1G16130	37.778	720	376	19	2	693	15	690	2.27e-147	449
MS.gene86332.t1	AT1G16120	39.056	699	359	18	28	693	39	703	3.55e-140	430
MS.gene86332.t1	AT1G69730	36.267	750	378	18	8	694	11	723	1.61e-139	430
MS.gene86332.t1	AT1G16260	37.411	703	370	16	4	693	10	655	6.89e-139	426
MS.gene86332.t1	AT1G79670	36.313	716	402	17	1	693	11	695	8.90e-139	427

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Find 149 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGTATTCGCTTCTT+TGG	0.280160	1.3:+9846361	None:intergenic
AAAAGTGATGTATATAGCTT+TGG	0.415407	1.3:-9844401	MS.gene86332:CDS
AAACAAACAAGAGATCAAGG+AGG	0.753887	1.3:-9844231	MS.gene86332:CDS
AAAGTGTTTGAGACTTAGAG+GGG	0.676284	1.3:-9844192	MS.gene86332:CDS
AAATTCTTTAGGCAGAACGG+AGG	0.683799	1.3:-9845061	MS.gene86332:CDS
AACAACTCAAAACTAATACG+TGG	0.715483	1.3:-9846482	MS.gene86332:CDS
AAGACCTAGTATGAAGGAAG+TGG	0.555792	1.3:-9844165	MS.gene86332:CDS
AAGGGTGCCACTTATTCAAC+TGG	0.396511	1.3:-9846248	MS.gene86332:CDS
AAGTTATTCAAGATGGTATG+TGG	0.467150	1.3:-9844262	MS.gene86332:CDS
AATAACACTGGAAAATGCAC+AGG	0.601342	1.3:-9846179	MS.gene86332:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACTCAAAACTAATACG+TGG	-	chr1.3:9844163-9844182	MS.gene86332:CDS	30.0%
AAGTTATTCAAGATGGTATG+TGG	-	chr1.3:9846383-9846402	MS.gene86332:CDS	30.0%
ACAAACTCATAAACCAACAA+AGG	+	chr1.3:9845911-9845930	None:intergenic	30.0%
AGAAAACAAACAAGAGATCA+AGG	-	chr1.3:9846411-9846430	MS.gene86332:CDS	30.0%
AGTGATAACATTCTCTTAGA+TGG	-	chr1.3:9846085-9846104	MS.gene86332:CDS	30.0%
ATACACACAAGAGATTTAAC+CGG	-	chr1.3:9845138-9845157	MS.gene86332:CDS	30.0%
ATTTCATTTCCATTTGACCT+TGG	+	chr1.3:9844219-9844238	None:intergenic	30.0%
ATTTGATATGCATTTCCATC+AGG	+	chr1.3:9845328-9845347	None:intergenic	30.0%
CAATGATGACATAAATGTAG+AGG	-	chr1.3:9846549-9846568	MS.gene86332:CDS	30.0%
GAAAACAAATTCATTACCGT+TGG	-	chr1.3:9844340-9844359	MS.gene86332:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	9843968	9846699	9843968	ID=MS.gene86332
chr1.3	mRNA	9843968	9846699	9843968	ID=MS.gene86332.t1;Parent=MS.gene86332
chr1.3	exon	9845823	9846699	9845823	ID=MS.gene86332.t1.exon1;Parent=MS.gene86332.t1
chr1.3	CDS	9845823	9846699	9845823	ID=cds.MS.gene86332.t1;Parent=MS.gene86332.t1
chr1.3	exon	9845303	9845476	9845303	ID=MS.gene86332.t1.exon2;Parent=MS.gene86332.t1
chr1.3	CDS	9845303	9845476	9845303	ID=cds.MS.gene86332.t1;Parent=MS.gene86332.t1
chr1.3	exon	9843968	9845169	9843968	ID=MS.gene86332.t1.exon3;Parent=MS.gene86332.t1
chr1.3	CDS	9843968	9845169	9843968	ID=cds.MS.gene86332.t1;Parent=MS.gene86332.t1

Gene Sequence

>MS.gene86332

ATGCTTGCTACATTAGCACTTTTGATAGAAGCAGTTCCATTTGCATTTGCATATGATCAACCTCAACAAGTTCTACCTGGCTGCAATTACACTTGTGGAGGTGTAAAAGTTCCATATCCATTTGGCATAGGAAATTCAACATCACAAAATCATACACCATGTTACATGAATTCCAAATTTTATCTCACTTGTGTAAACAACTCAAAACTAATACGTGGTAACAATATACAAGTCCTAGACATAAATCCCCAAGGTCAAATGGAAATGAAATTTTTCGTTTCACATCTCTGTACAAATAGTAGTAGTAGTAATAATACCAAAGAAGCGAATACACCTTTTCTCAGAGTTCCTTCACTCACAATTTCAAGCACGGAAAACAAATTCATTACCGTTGGTTGCGACAGTTACGGATATCACAACAGTAATTTCAAGGGTGCCACTTATTCAACTGGATGCTTAACAAGATGTTATGATTTTGATCCTAAAATGGTAATTGGGAATAACACTGGAAAATGCACAGGATTAGGGTGTTGTGAAGTTGATATTCCTCCACTTATGAAAAATATCACCATACAAGCATTTAAATTCCCAGCTTCTACACTGTCTATGGAAAATTCTTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAAATTTTCTGTAGAACATATAAAGAAACTACCTAATGGAACTTTCCCTATGGTTGTTAATTGGGCTATTACAAATGAATCGTGTCAAATAGCCCAAACTACAGATAACTATGCCTGCAAGGAAAATAGTGAATGTGTTGATAAAGATTCAGATTATGACGGTTACAGGTGCAAGTGTTTGGCAGGTTTTGAAGGAAATCCATACCTTCCCGGAGGCTGCAGAGGTAACTAACAGATCATAATTGTATACCGCAGTTTTTTTTTTCTTTCTTAGTTTAATTAATTGATTATGCTTCATATCTTTGATGTTTTTTTGAATTTGGTTTCTCTTAATTATGTGACTCGTTTTAAAATGTTGAGTAAGCAACTCATTTTAAAAAGTGGTTGACTATATAAAGTCCACAAAAATGTGGTTGGTGACACTAAGTTTTTAGGTAGTTAGTGATTCATCGTAATAAATCTAAAAATTGAATTGGGATTCATCGATGTCTTACGATGAGAATCATGTTCAAAATAGATACACACAAGAGATTTAACCGGCAAACAACAATGCTTTTAATTGTCTTTCAGACATTAACGAATGTGCGACATCAAATCATACATGCCTAAGTAAAGCAAATTGTAACAACACTTTTGGGAATTACACTTGTTTCTGTCCGATCGGACAATTTGGAAATGGAACAAAGCTAGGAGGGTGCAAAGTACCTGATGGAAATGCATATCAAATAGTACCAACTGTCCTTGGTAAGCAACAAAACACACCTAATTTTAGTTTATGATCAATTTTTTAAAATCGTATGTATTTATTAGTTTATATGCTACTGATATTAATTTGTGAAACAATCCAAAATTTGGGTTCAATATATTTTGGATGCAGGAGTAGGAGCAGTATTTATTGTTCTATTTGTGTGCATAATTTCCTACTTAATATACCAAAAAATGAAACTTGTCAAATTGAAAGAGAAATTCTTTAGGCAGAACGGAGGTTCTATTTTGGAACAGAAACTTCGTCAAAGAAAAGACTCATCTCAAATAGCTCACATTTTCAAAGAAAAGGAACTAAGGAAAGCCACTAACAACTTTGATGACAGCTTAGTCATAGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAAAACTAGATGATAATCGAATTGTTGCTATCAAAAAGTCCAAAACTATAGACGAAAGCCAAATTGAACAATTCATTAATGAGGTGGATGTTGTCTCTCAAATAAATCACAGGAATGTGGTCAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTAGCAATGGTACTCTTTCTGAATTTATACACACACAAGGTAAGACGAACGATCTAACTTGGAAAACTCGTATTAAGATAGCCGCAGAGGTAGCTGAAGCTCTGTCGTATCTACATTCATATGCCTCAATACCTATTATCCATAGAGATGTTAAGAGTGATAACATTCTCTTAGATGGAACCAACATTGCCAAAGTCTCAGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACGATTGGATACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTGTGGAGCTGCTAACAGGGGAGAAACCTTTTTGTTTTGTTAGGTCGGAAGAAAGAAGAAGTCTTGCTATGCATTTTCTATCTTGCTTGAAAAGGGATAATGTGTTTGAAGTTATTCAAGATGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTAGCTGTTCTTGCAGCAAAGTGTTTGAGACTTAGAGGGGAGGAAAGACCTAGTATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGATCAATGATGACATAAATGTAGAGGAGAGTCGGTACTTGCTTCATGAATCATCATCGAGCATTTATGAACCTGGTGATAGCAGCAACCGTGGAGATATTGGATACGACAGCCTGAAAGAACTTGAACTGGTAGTATTGGACGATGGAAGGTGA

Protein sequence

>MS.gene86332.t1

MLATLALLIEAVPFAFAYDQPQQVLPGCNYTCGGVKVPYPFGIGNSTSQNHTPCYMNSKFYLTCVNNSKLIRGNNIQVLDINPQGQMEMKFFVSHLCTNSSSSNNTKEANTPFLRVPSLTISSTENKFITVGCDSYGYHNSNFKGATYSTGCLTRCYDFDPKMVIGNNTGKCTGLGCCEVDIPPLMKNITIQAFKFPASTLSMENSCSYSFIAKQGSYKFSVEHIKKLPNGTFPMVVNWAITNESCQIAQTTDNYACKENSECVDKDSDYDGYRCKCLAGFEGNPYLPGGCRDINECATSNHTCLSKANCNNTFGNYTCFCPIGQFGNGTKLGGCKVPDGNAYQIVPTVLGVGAVFIVLFVCIISYLIYQKMKLVKLKEKFFRQNGGSILEQKLRQRKDSSQIAHIFKEKELRKATNNFDDSLVIGRGGFGTVFKGKLDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSEFIHTQGKTNDLTWKTRIKIAAEVAEALSYLHSYASIPIIHRDVKSDNILLDGTNIAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFCFVRSEERRSLAMHFLSCLKRDNVFEVIQDGMWNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINDDINVEESRYLLHESSSSIYEPGDSSNRGDIGYDSLKELELVVLDDGR