AlfalfaGEDB | MS.gene87374

M. sativa cultivar XinJiangDaYe / MS.gene87374

KEGG: -
GO: -
PFAM: PF04784.17 PF14389.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87374.t1	XP_013446428.1	92.3	626	48	0	1	626	1	626	0.00E+00	1134.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87374.t1	G7ZYV9	92.3	626	48	0	1	626	1	626	0.0e+00	1134.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene87374	0.804106	2.53E-49	-1.69E-46
MS.gene049418	MS.gene87374	0.836497	9.04E-57	-1.69E-46
MS.gene053144	MS.gene87374	0.811704	6.13E-51	-1.69E-46
MS.gene054584	MS.gene87374	0.809438	1.89E-50	-1.69E-46
MS.gene055537	MS.gene87374	0.804263	2.35E-49	-1.69E-46
MS.gene05894	MS.gene87374	0.801858	7.38E-49	-1.69E-46
MS.gene059154	MS.gene87374	0.805561	1.26E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87374.t1	MTR_8g078760	97.125	626	18	0	1	626	1	626	0.0	1266
MS.gene87374.t1	MTR_8g078760	96.415	530	19	0	1	530	1	530	0.0	1067
MS.gene87374.t1	MTR_5g018820	67.937	630	177	12	5	626	12	624	0.0	808
MS.gene87374.t1	MTR_4g068920	42.233	618	308	11	26	625	47	633	1.30e-142	429
MS.gene87374.t1	MTR_5g012790	29.088	636	360	16	12	625	22	588	2.93e-68	233
MS.gene87374.t1	MTR_8g079840	28.976	459	286	7	169	620	170	595	2.18e-42	162
MS.gene87374.t1	MTR_5g079910	30.372	349	212	8	296	624	176	513	4.35e-39	151
MS.gene87374.t1	MTR_5g017790	29.940	334	193	7	294	620	245	544	4.56e-38	149
MS.gene87374.t1	MTR_5g017790	29.940	334	193	7	294	620	233	532	5.55e-38	148
MS.gene87374.t1	MTR_3g101340	31.138	334	190	7	296	620	235	537	2.15e-37	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87374.t1	AT5G66600	56.508	630	229	15	10	626	17	614	0.0	637
MS.gene87374.t1	AT5G66600	56.508	630	229	15	10	626	17	614	0.0	637
MS.gene87374.t1	AT5G66600	56.508	630	229	15	10	626	17	614	0.0	637
MS.gene87374.t1	AT5G66600	56.508	630	229	15	10	626	17	614	0.0	637
MS.gene87374.t1	AT5G66600	56.508	630	229	15	10	626	17	614	0.0	637
MS.gene87374.t1	AT5G66600	56.844	621	225	14	17	626	6	594	0.0	633
MS.gene87374.t1	AT5G66600	58.609	575	201	12	61	626	14	560	0.0	619
MS.gene87374.t1	AT5G66600	55.198	529	196	13	10	528	17	514	8.69e-177	512
MS.gene87374.t1	AT5G66600	55.198	529	196	13	10	528	17	514	8.69e-177	512
MS.gene87374.t1	AT5G66600	55.198	529	196	13	10	528	17	514	8.69e-177	512

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Find 130 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCACTTATCGAAGTAC+TGG	0.408182	8.3:+25534505	None:intergenic
AAATAAGTGACCTGAAATTC+TGG	0.390317	8.3:+25534297	None:intergenic
AAATGACACGACAATACCCC+AGG	0.596729	8.3:-25535759	MS.gene87374:intron
AACAGCTAATAAGCTTTCTG+AGG	0.613973	8.3:-25534603	MS.gene87374:CDS
AACAGTTGCTCCAGAATTTC+AGG	0.263889	8.3:-25534307	MS.gene87374:CDS
AAGAAATGTCATGCAAAATC+CGG	0.384303	8.3:-25532990	MS.gene87374:CDS
AAGACTAGAAGATCAATTTA+AGG	0.265550	8.3:-25535837	MS.gene87374:CDS
AAGAGTCTTTCTTCTCTTGA+AGG	0.368777	8.3:-25534059	MS.gene87374:intron
AAGGATTCAAGGAGTTTAGT+GGG	0.542529	8.3:-25534394	MS.gene87374:CDS
AAGGCACTTATCGAAGTACT+GGG	0.648011	8.3:+25534506	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGTGACCTGAAATTC+TGG	+	chr8.3:25535968-25535987	None:intergenic	30.0%
AAATGACTGATTGAACCATA+CGG	+	chr8.3:25534328-25534347	None:intergenic	30.0%
AAGAAATGTCATGCAAAATC+CGG	-	chr8.3:25537272-25537291	MS.gene87374:intron	30.0%
AATATCACCACATTAAGAGA+TGG	+	chr8.3:25534086-25534105	None:intergenic	30.0%
AATTCTTATAGGGTTAGAGT+TGG	+	chr8.3:25536422-25536441	None:intergenic	30.0%
ACAAGCGGTTAATTCTTATA+GGG	+	chr8.3:25536432-25536451	None:intergenic	30.0%
ACCAAAATTACATCTTTGCA+TGG	+	chr8.3:25534728-25534747	None:intergenic	30.0%
ATATCACCACATTAAGAGAT+GGG	+	chr8.3:25534085-25534104	None:intergenic	30.0%
ATGTCGAACATTATTCATAG+GGG	+	chr8.3:25534244-25534263	None:intergenic	30.0%
ATTAATCCCATCTCTTAATG+TGG	-	chr8.3:25534076-25534095	MS.gene87374:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	25532920	25537364	25532920	ID=MS.gene87374
chr8.3	mRNA	25532920	25537364	25532920	ID=MS.gene87374.t1;Parent=MS.gene87374
chr8.3	exon	25537355	25537364	25537355	ID=MS.gene87374.t1.exon1;Parent=MS.gene87374.t1
chr8.3	CDS	25537355	25537364	25537355	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25537176	25537221	25537176	ID=MS.gene87374.t1.exon2;Parent=MS.gene87374.t1
chr8.3	CDS	25537176	25537221	25537176	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25536686	25536755	25536686	ID=MS.gene87374.t1.exon3;Parent=MS.gene87374.t1
chr8.3	CDS	25536686	25536755	25536686	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25536006	25536089	25536006	ID=MS.gene87374.t1.exon4;Parent=MS.gene87374.t1
chr8.3	CDS	25536006	25536089	25536006	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25535760	25535876	25535760	ID=MS.gene87374.t1.exon5;Parent=MS.gene87374.t1
chr8.3	CDS	25535760	25535876	25535760	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25534885	25535361	25534885	ID=MS.gene87374.t1.exon6;Parent=MS.gene87374.t1
chr8.3	CDS	25534885	25535361	25534885	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25534208	25534708	25534208	ID=MS.gene87374.t1.exon7;Parent=MS.gene87374.t1
chr8.3	CDS	25534208	25534708	25534208	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25534060	25534119	25534060	ID=MS.gene87374.t1.exon8;Parent=MS.gene87374.t1
chr8.3	CDS	25534060	25534119	25534060	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25533881	25533967	25533881	ID=MS.gene87374.t1.exon9;Parent=MS.gene87374.t1
chr8.3	CDS	25533881	25533967	25533881	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25533440	25533568	25533440	ID=MS.gene87374.t1.exon10;Parent=MS.gene87374.t1
chr8.3	CDS	25533440	25533568	25533440	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1
chr8.3	exon	25532920	25533219	25532920	ID=MS.gene87374.t1.exon11;Parent=MS.gene87374.t1
chr8.3	CDS	25532920	25533219	25532920	ID=cds.MS.gene87374.t1;Parent=MS.gene87374.t1

Gene Sequence

>MS.gene87374

ATGTTCTTAGGTAAGTAGTTTTGATTATGTTTTGCTTTGTTTTTTTTTTTTTTTTGGTATTTTCAGCAATTGTTGTTGTTTGTTTATGTTACATGTGATTAGTTTTAGTTGAAATAACTTTGATTTTTCATGATGGGTTTTAGGAATGGGACTTGAAGGTGTGATTCCAAGGCATAATCGTTCAAAGAGGTGATGCTCTATTTAATGTGTTTATGTTCTCTTGTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTATGGAAACTCGGTATTCGGTCTAATGACCGATTCCACTGTCCATTAGCAGAGGCCCAATTGAAGTCGGAGCAAAGCTCTAGTTGGGTACTTTATGTCTCTTGATTGTGGAATTTATGCTTGAGGGGTTGTTTATTTTCTGGAAAATAAAGCTTTCACATTTATGTCAAAATTGTTATTTTTTTCCTTTTGGGACTAATTTTCTATATCCATTTGGATTTTGGGGAGAAAGGTGTCATGTTTGAAACTAAAACTGAAGGGTATCTCAAAATACAGTTTTTATTATATGAATTAATGAATGATTATCATAACTTATCATATATTAATTGTGTTTTACTGTTTTTATATTATATGGCAGCTTTCCTGATAAGGAAACAGTGAAGGAGGATTGTTCAGATAGCGTTGAGACTTCAGATCAAACAAAGCTGGTATAATAAATCATTCCTCTATTTCATCTAAAAGTTGTCATAACTTTTTTCTAGCTTTTTTAAATTGGGAATTTAAAGGTACAATTCTTATAAATACATTGAGTTTAATTTTGATATATTGTCTGTCAGTGTAAAAAATTTTACAGTCAAATAATCACAATTAATTGTATATGTGGTTTTTAAAATAGTTTTAATTAAAGCATGGTGCTTAAATGCCATCATTTTTTCAGTTAAGTTGGTATTATGAACGTGGAAGGAAGCCCAAAATTTTCTGAATGTTTTTTTATTTTGCAAAATTTAACATGGCATGGATGATTAGAGAAGTGATTTTGTGGCATGTCGAAGGTGTAGTGTCCGGTGTCCCCCACCACCGACACATGTGATTACATAGAATTTCTTCCATTTTTTCAAATTATTACTGGTATCTACGTGTAAATGTCTGTGTCAGTGCTTCGTAGAAAGCATGCATATGTGGTAATTAATCCCATCTCTTAATGTGGTGATATTGATAGTATAGACTATGGTTGATTATCGTTGAGGCAATTATTTATAAGCAAGATTTTCATGCCTAAAGTATGAATTTGATCCGGTTCCAGGACACAGGTTACCTCACAGAATGCAGTGCAACTAGGAAAAAACAAACCCCTATGAATAATGTTCGACATACGCTGAAGCAAGAGGTACTGTATCGCAACTGATAAATACAATATGCAGCCATATTTTTAGCCGTATGGTTCAATCAGTCATTTTGTTTTAATCCTGTTACAACACTTTGTGTTTTTCAATTATCAATGTCTATTTTGTTGCAGATTTTACAATTAGAGAAAAGACTAGAAGATCAATTTAAGGTCAGATGCACATTAGAAAAGGCACTTGGATACAGACCGATATCTCTTGTTAATCCAAATGACACGACAATACCCCAGGTTGGAATTTCTTCAATGAATTATAACAATCACCATTTTTCAGTTATTAAACCACTTTTTCTTTCCAAGTTCACTATTAATAAGATTAGTGAAAGAATGTGTAATTTCTTCGATATCGACAGTTTTAACCAATTATCAACTGGTGTGTGACAGATCCAGAATTAATGTACTAAATTGTTTTTTGAAATAACATTGATTTTCCATGCAAAGATGTAATTTTGGTTTCTGCCATGTATGTGCCGGCAAGCATAAAGTTATTGTGCAACCCTTAAATGATCATTACACATTGTTTAGGAGTCTATTATAAGTTTGAAATATTTGGTACGACTTTCTTGTTCATGTTCATGTTCATGTTCTTGTATTGCTATTTGTCTGATAAGTTTTTTCTTTTACTCCAGCCAACCACAGAATTAATCAAAGACATTGCAGTTTTAGAGTTAGAAGTTGTATATTTGGAACAATATCTTCTCTCCTTGTACCGTAAAGCATTTGAACAACAACTATCCCCCGCCGTGGCTGCATCTGCATCTACCGTGGAAGAAAGCGAAAAGTCTCCTCCTGTAACAACACCTAGAGCAAGAGTCCTTCAAGTTTCTCCACCTGAGGTCTCAACCAAAAAAGGATGTTCAGATGTACAATGTATTGATCATGAGATTCATACACTTCAAAAGGAATGTAGTAGATATAAACCGGAGACTCCAGACAAAGAAAACATTGTACATCATCCAGAAGAAAAACATTCAGACTCTAGCGTGCATCGATGTCACTCCTCGTTATCCCAATATTCAACATCTACAGCAAAAGTATCTTCTCAAGAAGAAGAGTTAACTGATTCTCTACGCGCCTGCTATTCTCAACCCTTGTCCATGATGGAGGTAAGTCATGCTTCATGGAAAATTCTTATACCTGTTTTAATATGTAGTGTGGCTCTTAATTAATCAGTTCTGTTATGAAGTTTTGTTATGAACTATATGAGCATTAATAGCAGAGAATGATAGTACTTTTCTAGGCCTTAATTTGATTGAATTTTGGCTGACTTTGTTTTCTACAGTATGCTGAAAGTGTTGATACTTCAACCAAAGTAATCAGCCTAGCAGAACATCTCGGTACCCGAATATGTGATCATATTCCAGAAACAGCTAATAAGCTTTCTGAGGATATGGTTAAATGTATATCAGCTATATATTACAAACTTGCAGACCCACCTGTAACTAATCCGGGCCTTTCATCTCCCAGTACTTCGATAAGTGCCTTTTCTATTGGCGATCAAGGCGACACTTGGAGTCCAGGCTTAAGAAATAACTCCTCTTTTGATGTACAGTTGGATAATCCTTTCAACGTTGAAGGATTCAAGGAGTTTAGTGGGCCATATAGCACCATGGTTGAGGTACCGTGGATTTATAAAGAGAATCAGAAGTTGGCAGATACAGAACAGTTGCTCCAGAATTTCAGGTCACTTATTTGTCAATTAGAAGACGTAGATCCGGGGAAGTTGAAACACGAGGAGAAGTTAGCTTTCTGGATCAACGTACACAATGCTTTAGTGATGCATGTAATTATCATTTCTCAAAACCATGTTACCCTTTAATACATTTCATTTCTCTCACATGATTTAATTGGTTTATTTCTTCTTCTAATAGGCTTTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGAGTCTTTCTTCTCTTGAAGGTAAAAAGCAATACTAGCATTTTTAGTGAATTTGAGTATGAAACTTAGCCTATCTACTTTAGCTGACTTTCTCAGTGTATTGCTCTTTACAGGCTGCATATAATGTTGGGGGTCATACAGTCAGCGCAGACACAATACAAAATACTATACTAGGGTGCCGAATGTCTCGTCCTGGACAGGTGGAACATACAATCCCAACTCTAACCCTATAAGAATTAACCGCTTGTATCATATTGCGTTTATCATATAAGTCCTTATGTGTAAATTATTTATATGACATAAGATAAAATAAAGTCAAATTGTTTTCTTGAGCTATCTTGAAGAGCTTATGGACATGTCATTAGTTGTTTCAATAAGCTCTCCGAAACAGCATCACAAGTGCTTATGTTTATAGATAAGCTCAAATAAGCTAATCCAAACAAGCCCTTAGTAAAAATTCCTATTGTGTGACTTATGAGATCTTCTTGTAAGTAACTTTCTTCCGCTTGCAGTGGTTCCGCGTGTTCTTTTCTTCGAAGACAAAATTCAAAGCTGGAGATGGACGACAAGCATATGCAATCAAACATCCTGAGTCTCTTCTTCACTTTGCACTTTGTTCAGGAAACCACTCTGATCCAGCGGTACTTATCTCAGTTCTCGTATATATAATGTGATTTTCATTTGATTATGACATCTCCATTTTTATAATACCTGATGCTATCTTTACATTCAGTACTCATCATTTGTTTGGACAAATACCTTCTGGCACTGTGGGTGATCAAGTTAACAAAACGAACAATAACTGTTTTTTACATGTTTAATGTAAGTGAGTTGTTCATGTTGTACTGAACTTTATGACAGGTACGTGTATATACACCGAAGAGAGTGTTTCAAGAACTAGAAGTTGCAAAGGAAGAGTACATTAGAGCCACGTTTGGGATACGCAAGGACCAGAAAATACTTCTACCTAAGATTGTAGATACATTCTCCAAAGATTCAGGTTTGTCTCATGCTGGTCTTATAGAGATGATCCAACAGTCTCTACCTGAATCCCTGAGAAAGAGTGTTAAGAAATGTCATGCAAAATCCGGGAAGAGCATAGAATGGATTCCACACAACTTCACTTTTCGATATCTGATACCTAAGGAGCTGGTTAAATAA

Protein sequence

>MS.gene87374.t1

MFLGMGLEGVIPRHNRSKSFPDKETVKEDCSDSVETSDQTKLDTGYLTECSATRKKQTPMNNVRHTLKQEILQLEKRLEDQFKVRCTLEKALGYRPISLVNPNDTTIPQPTTELIKDIAVLELEVVYLEQYLLSLYRKAFEQQLSPAVAASASTVEESEKSPPVTTPRARVLQVSPPEVSTKKGCSDVQCIDHEIHTLQKECSRYKPETPDKENIVHHPEEKHSDSSVHRCHSSLSQYSTSTAKVSSQEEELTDSLRACYSQPLSMMEYAESVDTSTKVISLAEHLGTRICDHIPETANKLSEDMVKCISAIYYKLADPPVTNPGLSSPSTSISAFSIGDQGDTWSPGLRNNSSFDVQLDNPFNVEGFKEFSGPYSTMVEVPWIYKENQKLADTEQLLQNFRSLICQLEDVDPGKLKHEEKLAFWINVHNALVMHAFLAYGIPQNNVKRVFLLLKAAYNVGGHTVSADTIQNTILGCRMSRPGQWFRVFFSSKTKFKAGDGRQAYAIKHPESLLHFALCSGNHSDPAVRVYTPKRVFQELEVAKEEYIRATFGIRKDQKILLPKIVDTFSKDSGLSHAGLIEMIQQSLPESLRKSVKKCHAKSGKSIEWIPHNFTFRYLIPKELVK