Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87572.t1 | AES79079.2 | 91.8 | 343 | 20 | 1 | 1 | 335 | 8 | 350 | 6.10E-165 | 590.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87572.t1 | Q9FME2 | 38.5 | 330 | 172 | 7 | 15 | 335 | 23 | 330 | 7.0e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87572.t1 | A0A072TZ72 | 91.8 | 343 | 20 | 1 | 1 | 335 | 1 | 343 | 4.4e-165 | 590.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87572 | MS.gene044455 | PPI |
| MS.gene044456 | MS.gene87572 | PPI |
| MS.gene033053 | MS.gene87572 | PPI |
| MS.gene87572 | MS.gene063501 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87572.t1 | MTR_7g055610 | 93.294 | 343 | 15 | 1 | 1 | 335 | 8 | 350 | 0.0 | 613 |
| MS.gene87572.t1 | MTR_7g057520 | 93.294 | 343 | 15 | 1 | 1 | 335 | 1 | 343 | 0.0 | 613 |
| MS.gene87572.t1 | MTR_7g013840 | 38.841 | 345 | 177 | 7 | 15 | 342 | 25 | 352 | 6.37e-62 | 207 |
| MS.gene87572.t1 | MTR_7g013840 | 38.841 | 345 | 178 | 7 | 15 | 342 | 25 | 353 | 6.80e-62 | 207 |
| MS.gene87572.t1 | MTR_4g109640 | 39.118 | 340 | 165 | 8 | 15 | 335 | 25 | 341 | 3.86e-59 | 197 |
| MS.gene87572.t1 | MTR_4g109640 | 39.118 | 340 | 165 | 8 | 15 | 335 | 25 | 341 | 4.48e-59 | 197 |
| MS.gene87572.t1 | MTR_4g109640 | 39.118 | 340 | 165 | 8 | 15 | 335 | 25 | 341 | 3.93e-58 | 197 |
| MS.gene87572.t1 | MTR_4g083150 | 36.338 | 355 | 166 | 8 | 15 | 335 | 23 | 351 | 2.04e-55 | 190 |
| MS.gene87572.t1 | MTR_7g098440 | 31.965 | 341 | 199 | 11 | 15 | 332 | 21 | 351 | 1.18e-33 | 131 |
| MS.gene87572.t1 | MTR_1g045800 | 29.191 | 346 | 204 | 11 | 15 | 335 | 22 | 351 | 2.10e-28 | 115 |
| MS.gene87572.t1 | MTR_5g082180 | 93.182 | 44 | 3 | 0 | 370 | 413 | 126 | 169 | 2.18e-17 | 82.8 |
| MS.gene87572.t1 | MTR_3g108280 | 93.182 | 44 | 3 | 0 | 370 | 413 | 126 | 169 | 2.33e-17 | 82.8 |
| MS.gene87572.t1 | MTR_3g074840 | 97.143 | 35 | 1 | 0 | 380 | 414 | 31 | 65 | 1.94e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87572.t1 | AT3G25150 | 45.428 | 339 | 151 | 7 | 15 | 335 | 27 | 349 | 1.47e-83 | 264 |
| MS.gene87572.t1 | AT3G25150 | 45.773 | 343 | 144 | 9 | 15 | 335 | 126 | 448 | 7.10e-83 | 265 |
| MS.gene87572.t1 | AT5G60980 | 37.537 | 341 | 172 | 6 | 15 | 342 | 23 | 335 | 2.37e-51 | 179 |
| MS.gene87572.t1 | AT5G60980 | 37.537 | 341 | 172 | 6 | 15 | 342 | 23 | 335 | 2.37e-51 | 179 |
| MS.gene87572.t1 | AT5G60980 | 38.024 | 334 | 168 | 5 | 15 | 335 | 23 | 330 | 2.57e-51 | 179 |
| MS.gene87572.t1 | AT5G60980 | 38.024 | 334 | 168 | 5 | 15 | 335 | 23 | 330 | 2.57e-51 | 179 |
| MS.gene87572.t1 | AT5G48650 | 36.232 | 345 | 180 | 8 | 13 | 331 | 22 | 352 | 4.75e-50 | 176 |
| MS.gene87572.t1 | AT1G13730 | 31.737 | 334 | 177 | 8 | 15 | 337 | 23 | 316 | 3.15e-36 | 137 |
| MS.gene87572.t1 | AT1G13730 | 31.737 | 334 | 177 | 8 | 15 | 337 | 23 | 316 | 3.15e-36 | 137 |
| MS.gene87572.t1 | AT2G03640 | 32.298 | 322 | 182 | 9 | 15 | 333 | 23 | 311 | 7.21e-36 | 137 |
| MS.gene87572.t1 | AT1G69250 | 31.700 | 347 | 197 | 12 | 1 | 336 | 1 | 318 | 4.24e-35 | 134 |
| MS.gene87572.t1 | AT2G03640 | 32.508 | 323 | 179 | 10 | 15 | 333 | 23 | 310 | 1.02e-34 | 133 |
| MS.gene87572.t1 | AT2G03640 | 32.508 | 323 | 179 | 10 | 15 | 333 | 23 | 310 | 1.02e-34 | 133 |
| MS.gene87572.t1 | AT2G03640 | 32.508 | 323 | 179 | 10 | 15 | 333 | 23 | 310 | 1.02e-34 | 133 |
| MS.gene87572.t1 | AT2G03640 | 32.508 | 323 | 179 | 10 | 15 | 333 | 23 | 310 | 1.21e-34 | 134 |
| MS.gene87572.t1 | AT1G69250 | 31.728 | 353 | 201 | 12 | 1 | 342 | 1 | 324 | 1.39e-34 | 133 |
| MS.gene87572.t1 | AT5G43960 | 29.692 | 357 | 193 | 11 | 15 | 335 | 19 | 353 | 2.74e-26 | 110 |
| MS.gene87572.t1 | AT3G07250 | 30.793 | 328 | 177 | 13 | 15 | 331 | 18 | 306 | 1.08e-25 | 110 |
| MS.gene87572.t1 | AT5G43960 | 30.769 | 273 | 135 | 8 | 98 | 335 | 41 | 294 | 3.59e-21 | 95.1 |
| MS.gene87572.t1 | AT2G40010 | 95.122 | 41 | 2 | 0 | 373 | 413 | 129 | 169 | 1.65e-16 | 80.5 |
| MS.gene87572.t1 | AT3G09200 | 92.683 | 41 | 3 | 0 | 373 | 413 | 95 | 135 | 4.54e-16 | 78.6 |
| MS.gene87572.t1 | AT3G09200 | 92.683 | 41 | 3 | 0 | 373 | 413 | 128 | 168 | 6.78e-16 | 78.6 |
| MS.gene87572.t1 | AT3G11250 | 92.683 | 41 | 3 | 0 | 373 | 413 | 128 | 168 | 7.19e-16 | 78.6 |
Find 113 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTAGAACCATTTGTTTC+TGG | 0.167296 | 4.1:-75157891 | None:intergenic |
| CCGGATATCACCTCCCTTAA+AGG | 0.173779 | 4.1:-75159575 | None:intergenic |
| TCTTCGGCACTTCTTCAATT+TGG | 0.175338 | 4.1:-75157513 | None:intergenic |
| CTTCGGCACTTCTTCAATTT+GGG | 0.237490 | 4.1:-75157512 | None:intergenic |
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 4.1:+75160152 | MS.gene87572:CDS |
| GGAGTCATTGTCTTGGTCAC+TGG | 0.284606 | 4.1:+75156996 | MS.gene87572:CDS |
| GAGAATATGTTCAAGAAGTT+TGG | 0.285207 | 4.1:+75158142 | MS.gene87572:CDS |
| AACAATACCCTTGTTAATCT+TGG | 0.314577 | 4.1:-75160265 | None:intergenic |
| GAGTCATTGTCTTGGTCACT+GGG | 0.328550 | 4.1:+75156997 | MS.gene87572:CDS |
| TGGACACCGCCACTCTTGAT+AGG | 0.341350 | 4.1:-75158166 | None:intergenic |
| TTCACATAAGGTAGCTGAAT+TGG | 0.371007 | 4.1:+75157486 | MS.gene87572:CDS |
| GTGGATGCACAAGAGTCTTT+TGG | 0.375158 | 4.1:+75156969 | MS.gene87572:CDS |
| GCTGCTTTCTGTGAATCATT+AGG | 0.376741 | 4.1:-75157439 | None:intergenic |
| TAAAACCTATGCACATGCTC+TGG | 0.393884 | 4.1:-75156278 | None:intergenic |
| ATACCTTTGCTGTCCTAACT+TGG | 0.400943 | 4.1:-75158186 | None:intergenic |
| TACCCTTGTTAATCTTGGTT+GGG | 0.404379 | 4.1:-75160260 | None:intergenic |
| ATAGATATACATACAACATT+AGG | 0.421400 | 4.1:-75155952 | None:intergenic |
| AGGGCATGTGTAGCATTTCC+AGG | 0.424842 | 4.1:-75158115 | None:intergenic |
| CGGATATCACCTCCCTTAAA+GGG | 0.429573 | 4.1:-75159574 | None:intergenic |
| CACAGAAGCAGCTGTCATTA+CGG | 0.429670 | 4.1:-75157808 | None:intergenic |
| AGCATCATGTTACCATTCTC+AGG | 0.433770 | 4.1:-75157176 | None:intergenic |
| ACAGCCACAACAAGTTTACT+TGG | 0.435489 | 4.1:-75160536 | None:intergenic |
| TTCCTTGCGCCTCAAGAGAA+AGG | 0.437431 | 4.1:+75157068 | MS.gene87572:CDS |
| TGACTGCTGAGGATGGTGAT+AGG | 0.438498 | 4.1:+75157329 | MS.gene87572:CDS |
| AGTGTTGGATCCTCCTGTGC+TGG | 0.440145 | 4.1:+75157279 | MS.gene87572:intron |
| AGAGTGGCGGTGTCCAAGTT+AGG | 0.440879 | 4.1:+75158173 | MS.gene87572:CDS |
| CCGATGATACCATCTGGTTC+AGG | 0.443109 | 4.1:-75156326 | None:intergenic |
| AGAAGTCTACAATCCAGAAA+AGG | 0.444292 | 4.1:+75157360 | MS.gene87572:CDS |
| TTGGTCACTGGGTTTATGAT+AGG | 0.445866 | 4.1:+75157008 | MS.gene87572:CDS |
| GAAGTCTACAATCCAGAAAA+GGG | 0.452472 | 4.1:+75157361 | MS.gene87572:CDS |
| TACCAAGATGTCAGTAAGCT+TGG | 0.454912 | 4.1:+75156299 | MS.gene87572:CDS |
| AGTTCTTCGTAGATATTTGT+GGG | 0.457699 | 4.1:-75159544 | None:intergenic |
| AAGTTCTTCGTAGATATTTG+TGG | 0.458407 | 4.1:-75159545 | None:intergenic |
| TCAACAAGAACCTCAGGAAC+AGG | 0.459442 | 4.1:-75157412 | None:intergenic |
| GGCTATTCAATTTATTTGAA+AGG | 0.459524 | 4.1:+75158088 | MS.gene87572:CDS |
| GCTATTCAATTTATTTGAAA+GGG | 0.459913 | 4.1:+75158089 | MS.gene87572:CDS |
| CCTTTAAGGGAGGTGATATC+CGG | 0.463323 | 4.1:+75159575 | MS.gene87572:CDS |
| ATGGAGGCATATGATTTCTT+CGG | 0.469501 | 4.1:-75157529 | None:intergenic |
| ATTTATTTGAAAGGGCTGCC+TGG | 0.471179 | 4.1:+75158097 | MS.gene87572:CDS |
| ATACCCTTGTTAATCTTGGT+TGG | 0.474510 | 4.1:-75160261 | None:intergenic |
| ACTCTTGTGCATCCACAGAT+AGG | 0.475539 | 4.1:-75156962 | None:intergenic |
| GGATCATTTGTGTCGCATAT+AGG | 0.476402 | 4.1:+75159596 | MS.gene87572:CDS |
| GACCAAGCTTACTGACATCT+TGG | 0.477816 | 4.1:-75156301 | None:intergenic |
| GGAGATCCAATGTCATGATC+AGG | 0.484436 | 4.1:-75157146 | None:intergenic |
| TGTTGATGAAAATGAAATCA+AGG | 0.484974 | 4.1:+75157121 | MS.gene87572:CDS |
| TGACATGAAGATACTGTCAA+TGG | 0.488166 | 4.1:+75156914 | MS.gene87572:CDS |
| TCTCCTGCCTCTCCTGAGAA+TGG | 0.504733 | 4.1:+75157164 | MS.gene87572:CDS |
| GGAACTTGTGTCTCCAGCAC+AGG | 0.507872 | 4.1:-75157292 | None:intergenic |
| GCAGTCACAGATATTTGCTC+TGG | 0.513035 | 4.1:-75157313 | None:intergenic |
| TTACCATTCTCAGGAGAGGC+AGG | 0.514038 | 4.1:-75157167 | None:intergenic |
| GGAATTTCAACAAGAACCTC+AGG | 0.516382 | 4.1:-75157418 | None:intergenic |
| GCTACCTTATGTGAATCATC+AGG | 0.519114 | 4.1:-75157478 | None:intergenic |
| CTTGTGGAACTCATTAAGAA+AGG | 0.520444 | 4.1:+75160300 | MS.gene87572:CDS |
| ACAAAGTAGCCTTTCTCTTG+AGG | 0.521254 | 4.1:-75157077 | None:intergenic |
| TGTTCCTGATGATTCACATA+AGG | 0.524252 | 4.1:+75157474 | MS.gene87572:CDS |
| TGTTGAAATCATTACCCTTG+TGG | 0.526102 | 4.1:+75160284 | MS.gene87572:CDS |
| TTCAGAGAATCAAGTTCCTC+CGG | 0.526348 | 4.1:+75155927 | MS.gene87572:CDS |
| ACCATTTGTTTCTGGCACAC+TGG | 0.527488 | 4.1:-75157883 | None:intergenic |
| AATGATTCACAGAAAGCAGC+TGG | 0.531023 | 4.1:+75157442 | MS.gene87572:CDS |
| TATATGCGACACAAATGATC+CGG | 0.531249 | 4.1:-75159594 | None:intergenic |
| GCAAGTGTCTGTTGAAGAAG+AGG | 0.533771 | 4.1:+75157384 | MS.gene87572:CDS |
| TCCAGTGTGCCAGAAACAAA+TGG | 0.535626 | 4.1:+75157882 | MS.gene87572:CDS |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 4.1:-75160150 | None:intergenic |
| AAAACCTATGCACATGCTCT+GGG | 0.537483 | 4.1:-75156277 | None:intergenic |
| GTAGCTTAAGGTAATGAAAG+AGG | 0.550794 | 4.1:+75157770 | MS.gene87572:intron |
| GACATGAAGATACTGTCAAT+GGG | 0.556537 | 4.1:+75156915 | MS.gene87572:CDS |
| TCTAGTATAAGTACTAATGA+AGG | 0.557933 | 4.1:+75157906 | MS.gene87572:CDS |
| AAGGAACCTGATCATGACAT+TGG | 0.558690 | 4.1:+75157140 | MS.gene87572:CDS |
| GACTGCTGAGGATGGTGATA+GGG | 0.564877 | 4.1:+75157330 | MS.gene87572:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 4.1:+75160257 | MS.gene87572:CDS |
| ATAACAAACCTGGAAGAAAG+AGG | 0.567524 | 4.1:-75160160 | None:intergenic |
| AGTATAAGTACTAATGAAGG+TGG | 0.568379 | 4.1:+75157909 | MS.gene87572:CDS |
| TTTGTTTCTGGCACACTGGA+TGG | 0.571504 | 4.1:-75157879 | None:intergenic |
| CCTGAACCAGATGGTATCAT+CGG | 0.573611 | 4.1:+75156326 | MS.gene87572:CDS |
| CTTTCTTAATGAGTTCCACA+AGG | 0.576372 | 4.1:-75160299 | None:intergenic |
| GGACACCGCCACTCTTGATA+GGG | 0.579408 | 4.1:-75158165 | None:intergenic |
| CTCATTAAGAAAGGAGACAA+AGG | 0.584845 | 4.1:+75160309 | MS.gene87572:CDS |
| AGAGTTCCTCAAGGCAACAC+AGG | 0.587658 | 4.1:+75160120 | MS.gene87572:intron |
| AGCCTTTCTCTTGAGGCGCA+AGG | 0.588769 | 4.1:-75157070 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 4.1:-75160149 | None:intergenic |
| CACTGGGTTTATGATAGGAA+AGG | 0.597377 | 4.1:+75157013 | MS.gene87572:CDS |
| ATACATACAACATTAGGTGC+CGG | 0.599500 | 4.1:-75155946 | None:intergenic |
| GTGATGCCGATGATACCATC+TGG | 0.601385 | 4.1:-75156332 | None:intergenic |
| ACTTGTGTCTCCAGCACAGG+AGG | 0.604167 | 4.1:-75157289 | None:intergenic |
| TCTTGAACATATTCTCAACA+AGG | 0.606195 | 4.1:-75158135 | None:intergenic |
| TCAAGCCCTGTGTTGCCTTG+AGG | 0.608429 | 4.1:-75160126 | None:intergenic |
| GCAGCTGTCATTACGGAGGA+CGG | 0.611765 | 4.1:-75157801 | None:intergenic |
| GCAAATATCTGTGACTGCTG+AGG | 0.616027 | 4.1:+75157318 | MS.gene87572:CDS |
| GAGTTCCTCAAGGCAACACA+GGG | 0.619161 | 4.1:+75160121 | MS.gene87572:intron |
| CAGCCACAACAAGTTTACTT+GGG | 0.622602 | 4.1:-75160535 | None:intergenic |
| ATATCTGTGACTGCTGAGGA+TGG | 0.626749 | 4.1:+75157322 | MS.gene87572:CDS |
| GAGAGAGCTCACGGCCATTG+TGG | 0.628746 | 4.1:-75156357 | None:intergenic |
| AAGTCTACAATCCAGAAAAG+GGG | 0.635113 | 4.1:+75157362 | MS.gene87572:CDS |
| TAGTGCGGAGATCCTATCTG+TGG | 0.636226 | 4.1:+75156950 | MS.gene87572:CDS |
| GGTTGTTACAGAGTTCCTCA+AGG | 0.636391 | 4.1:+75160111 | MS.gene87572:intron |
| AAAGCCCAGAGCATGTGCAT+AGG | 0.637108 | 4.1:+75156273 | MS.gene87572:CDS |
| GGAAACAATCAAGAAACTGA+AGG | 0.637783 | 4.1:+75157930 | MS.gene87572:CDS |
| AAATGAAGAATACTGTGATG+AGG | 0.640003 | 4.1:+75159111 | MS.gene87572:CDS |
| AGAGGAAGCTCCTGTTCCTG+AGG | 0.641981 | 4.1:+75157402 | MS.gene87572:CDS |
| TCTGGCACACTGGATGGTGA+AGG | 0.641996 | 4.1:-75157873 | None:intergenic |
| CATGTTACCATTCTCAGGAG+AGG | 0.648742 | 4.1:-75157171 | None:intergenic |
| GGGTTATAGTGAACTTAGTG+CGG | 0.649351 | 4.1:+75156935 | MS.gene87572:CDS |
| CTTGGTCGTCCTGAACCAGA+TGG | 0.650811 | 4.1:+75156317 | MS.gene87572:CDS |
| AAGTTTGGCCCTATCAAGAG+TGG | 0.651104 | 4.1:+75158157 | MS.gene87572:CDS |
| TTTCTTAATGAGTTCCACAA+GGG | 0.656574 | 4.1:-75160298 | None:intergenic |
| CTTGAACATATTCTCAACAA+GGG | 0.657058 | 4.1:-75158134 | None:intergenic |
| AGAACAGACTCTTACAATGG+AGG | 0.662780 | 4.1:-75157545 | None:intergenic |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 4.1:+75160258 | MS.gene87572:CDS |
| CATCGGCATCACAACCACAA+TGG | 0.675733 | 4.1:+75156343 | MS.gene87572:CDS |
| TGTCCAAGTTAGGACAGCAA+AGG | 0.677658 | 4.1:+75158183 | MS.gene87572:CDS |
| TTTGGCCCTATCAAGAGTGG+CGG | 0.685024 | 4.1:+75158160 | MS.gene87572:CDS |
| CATACAACATTAGGTGCCGG+AGG | 0.687564 | 4.1:-75155943 | None:intergenic |
| AGAAGCAGCTGTCATTACGG+AGG | 0.730010 | 4.1:-75157805 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACAAAAAAAAACA+GGG | - | chr4.1:75158226-75158245 | None:intergenic | 10.0% |
| !! | CATATACATATATATATATA+TGG | - | chr4.1:75157965-75157984 | None:intergenic | 10.0% |
| !! | TAAAAAAAACAAAAAAAAAC+AGG | - | chr4.1:75158227-75158246 | None:intergenic | 10.0% |
| !! | TAATAACAAATAAATTGAAT+AGG | + | chr4.1:75159194-75159213 | MS.gene87572:intron | 10.0% |
| !! | TTTATTTAACATGTATTTAA+AGG | - | chr4.1:75159717-75159736 | None:intergenic | 10.0% |
| !!! | TAGTTTTCAATTTTAAAAAA+AGG | + | chr4.1:75158998-75159017 | MS.gene87572:intron | 10.0% |
| !! | AACTTAGATTCTAATAAATA+TGG | + | chr4.1:75156783-75156802 | MS.gene87572:intron | 15.0% |
| !! | ACAATGGAAATAAATTTAAA+AGG | - | chr4.1:75156738-75156757 | None:intergenic | 15.0% |
| !!! | CTCATTATTAATTTGTTTTT+AGG | + | chr4.1:75158576-75158595 | MS.gene87572:intron | 15.0% |
| !! | AAAAATATTCTTACTTGGAA+TGG | - | chr4.1:75158537-75158556 | None:intergenic | 20.0% |
| !! | AACCATTATCATAAATAGAA+AGG | - | chr4.1:75160402-75160421 | None:intergenic | 20.0% |
| !! | AACTTGTATATTTGTTTGTT+TGG | + | chr4.1:75159742-75159761 | MS.gene87572:intron | 20.0% |
| !! | AAGACAATGATTAATTTAGT+CGG | + | chr4.1:75159256-75159275 | MS.gene87572:intron | 20.0% |
| !! | ACAGAAAAAATATTCTTACT+TGG | - | chr4.1:75158542-75158561 | None:intergenic | 20.0% |
| !! | ACTTGTATATTTGTTTGTTT+GGG | + | chr4.1:75159743-75159762 | MS.gene87572:intron | 20.0% |
| !! | ATAACAAGTAACATTTACAA+TGG | - | chr4.1:75157619-75157638 | None:intergenic | 20.0% |
| !! | ATAGATATACATACAACATT+AGG | - | chr4.1:75155955-75155974 | None:intergenic | 20.0% |
| !! | ATATAAAATTCCTAAGAACA+AGG | - | chr4.1:75159929-75159948 | None:intergenic | 20.0% |
| !! | ATTGAAATAAATTCGTGAAA+AGG | - | chr4.1:75158706-75158725 | None:intergenic | 20.0% |
| !! | GCTATTCAATTTATTTGAAA+GGG | + | chr4.1:75158089-75158108 | MS.gene87572:CDS | 20.0% |
| !! | TAGAATCTAAGTTAACAAAT+GGG | - | chr4.1:75156776-75156795 | None:intergenic | 20.0% |
| !! | TATTTATTGATGTGTTCAAT+TGG | + | chr4.1:75158046-75158065 | MS.gene87572:intron | 20.0% |
| !! | TTAGAATCTAAGTTAACAAA+TGG | - | chr4.1:75156777-75156796 | None:intergenic | 20.0% |
| !!! | AAGTTAATCTCTCAAATTTT+GGG | + | chr4.1:75160090-75160109 | MS.gene87572:intron | 20.0% |
| !!! | ATTTTTAATGTGATTGGTTT+AGG | + | chr4.1:75156208-75156227 | MS.gene87572:intron | 20.0% |
| !!! | CATTATCTGATTTTCAAATA+CGG | - | chr4.1:75159782-75159801 | None:intergenic | 20.0% |
| !!! | TAAGTTAATCTCTCAAATTT+TGG | + | chr4.1:75160089-75160108 | MS.gene87572:intron | 20.0% |
| !!! | TATTTTAGTACTTTTCAACA+AGG | - | chr4.1:75160463-75160482 | None:intergenic | 20.0% |
| ! | AAAGAAAATGATAACAAACC+TGG | - | chr4.1:75160173-75160192 | None:intergenic | 25.0% |
| ! | AAGATATTGTACAAACCAAT+TGG | - | chr4.1:75156549-75156568 | None:intergenic | 25.0% |
| ! | ATAATGATAACAACTTACAG+TGG | + | chr4.1:75159796-75159815 | MS.gene87572:intron | 25.0% |
| ! | ATAGTAGTACTGTTAAACAA+AGG | - | chr4.1:75156243-75156262 | None:intergenic | 25.0% |
| ! | CATAGCCACTAATATATATT+CGG | - | chr4.1:75158894-75158913 | None:intergenic | 25.0% |
| ! | GGCTATTCAATTTATTTGAA+AGG | + | chr4.1:75158088-75158107 | MS.gene87572:CDS | 25.0% |
| ! | GTCCTTTCTATTTATGATAA+TGG | + | chr4.1:75160397-75160416 | MS.gene87572:intron | 25.0% |
| ! | TAACATTTACAATGGAAACT+CGG | - | chr4.1:75157611-75157630 | None:intergenic | 25.0% |
| ! | TAATGATAACAACTTACAGT+GGG | + | chr4.1:75159797-75159816 | MS.gene87572:intron | 25.0% |
| ! | TCAATATTCATATCTCCAAT+TGG | + | chr4.1:75156531-75156550 | MS.gene87572:intron | 25.0% |
| ! | TCCTCTAATAATTTCAAACT+AGG | - | chr4.1:75158833-75158852 | None:intergenic | 25.0% |
| ! | TCTAGTATAAGTACTAATGA+AGG | + | chr4.1:75157906-75157925 | MS.gene87572:CDS | 25.0% |
| ! | TGTTGAGATAAATAGAAGAA+AGG | + | chr4.1:75158448-75158467 | MS.gene87572:intron | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr4.1:75160227-75160246 | MS.gene87572:intron | 25.0% |
| ! | TTCTTCTATTTATCTCAACA+TGG | - | chr4.1:75158448-75158467 | None:intergenic | 25.0% |
| ! | TTGTACAAAATAGTGTTTAG+CGG | + | chr4.1:75156093-75156112 | MS.gene87572:intron | 25.0% |
| !! | TGATTTTCAAATACGGAAAA+GGG | - | chr4.1:75159775-75159794 | None:intergenic | 25.0% |
| !! | TGTTGATGAAAATGAAATCA+AGG | + | chr4.1:75157121-75157140 | MS.gene87572:CDS | 25.0% |
| !!! | AAATGCAATTTTGAGAGATT+TGG | + | chr4.1:75158654-75158673 | MS.gene87572:intron | 25.0% |
| !!! | AGTTTGTTTAAGTTTTGCTA+TGG | + | chr4.1:75156027-75156046 | MS.gene87572:intron | 25.0% |
| !!! | CAAACGTTTTTAGTCTAAAA+TGG | + | chr4.1:75159031-75159050 | MS.gene87572:intron | 25.0% |
| !!! | TAACCATGTTTTAATACTCT+TGG | + | chr4.1:75156583-75156602 | MS.gene87572:intron | 25.0% |
| !!! | TGACTGATTTTTAATGTGAT+TGG | + | chr4.1:75156202-75156221 | MS.gene87572:intron | 25.0% |
| !!! | TTGTTGATTTTGTTAAATGC+AGG | + | chr4.1:75160511-75160530 | MS.gene87572:intron | 25.0% |
| AAAATGCACACAAGAAACAA+GGG | - | chr4.1:75156496-75156515 | None:intergenic | 30.0% | |
| AAATGAAGAATACTGTGATG+AGG | + | chr4.1:75159111-75159130 | MS.gene87572:CDS | 30.0% | |
| AACAAGCAACTTAAGTTAAC+AGG | - | chr4.1:75157243-75157262 | None:intergenic | 30.0% | |
| AACAATACCCTTGTTAATCT+TGG | - | chr4.1:75160268-75160287 | None:intergenic | 30.0% | |
| AAGAAATTACACCAATGCAT+AGG | - | chr4.1:75156630-75156649 | None:intergenic | 30.0% | |
| AAGTTCTTCGTAGATATTTG+TGG | - | chr4.1:75159548-75159567 | None:intergenic | 30.0% | |
| AATCGCTATTTGACAACATT+GGG | + | chr4.1:75156141-75156160 | MS.gene87572:intron | 30.0% | |
| AATTGAATAGGAGTTGTTGT+CGG | + | chr4.1:75159206-75159225 | MS.gene87572:intron | 30.0% | |
| AGTATAAGTACTAATGAAGG+TGG | + | chr4.1:75157909-75157928 | MS.gene87572:CDS | 30.0% | |
| AGTTCTTCGTAGATATTTGT+GGG | - | chr4.1:75159547-75159566 | None:intergenic | 30.0% | |
| ATACTAGAACCATTTGTTTC+TGG | - | chr4.1:75157894-75157913 | None:intergenic | 30.0% | |
| ATATATATTAGTGGCTATGC+AGG | + | chr4.1:75158895-75158914 | MS.gene87572:intron | 30.0% | |
| CTAAATCCAATCAAGAGTTA+CGG | - | chr4.1:75158943-75158962 | None:intergenic | 30.0% | |
| CTAGCATAGAAGTAAAGATA+AGG | - | chr4.1:75158981-75159000 | None:intergenic | 30.0% | |
| CTTGAACATATTCTCAACAA+GGG | - | chr4.1:75158137-75158156 | None:intergenic | 30.0% | |
| GAGAATATGTTCAAGAAGTT+TGG | + | chr4.1:75158142-75158161 | MS.gene87572:CDS | 30.0% | |
| GCATTTAGATGATCATACAA+TGG | - | chr4.1:75156754-75156773 | None:intergenic | 30.0% | |
| TAAAATGCACACAAGAAACA+AGG | - | chr4.1:75156497-75156516 | None:intergenic | 30.0% | |
| TAATCGCTATTTGACAACAT+TGG | + | chr4.1:75156140-75156159 | MS.gene87572:intron | 30.0% | |
| TATAGAACAGACTCTTACAA+TGG | - | chr4.1:75157551-75157570 | None:intergenic | 30.0% | |
| TATTCTTACTTGGAATGGAT+TGG | - | chr4.1:75158532-75158551 | None:intergenic | 30.0% | |
| TCTTGAACATATTCTCAACA+AGG | - | chr4.1:75158138-75158157 | None:intergenic | 30.0% | |
| TTTCAAATAACGCCTATTTG+CGG | - | chr4.1:75156068-75156087 | None:intergenic | 30.0% | |
| TTTCTTAATGAGTTCCACAA+GGG | - | chr4.1:75160301-75160320 | None:intergenic | 30.0% | |
| ! | ATTCTTACTTGGAATGGATT+GGG | - | chr4.1:75158531-75158550 | None:intergenic | 30.0% |
| ! | ATTTAGTCGGATACTCATTT+TGG | + | chr4.1:75159269-75159288 | MS.gene87572:intron | 30.0% |
| ! | ATTTTGTGGAGTTAATAACC+AGG | + | chr4.1:75159299-75159318 | MS.gene87572:intron | 30.0% |
| ! | CTGATTTTCAAATACGGAAA+AGG | - | chr4.1:75159776-75159795 | None:intergenic | 30.0% |
| ! | CTTTATAGCTGTCTATGTTT+TGG | + | chr4.1:75156445-75156464 | MS.gene87572:intron | 30.0% |
| ! | GCCTAGTTTGAAATTATTAG+AGG | + | chr4.1:75158829-75158848 | MS.gene87572:intron | 30.0% |
| ! | TTTAGTCGGATACTCATTTT+GGG | + | chr4.1:75159270-75159289 | MS.gene87572:intron | 30.0% |
| !! | ATTTTGGGTGATCTATTTTG+TGG | + | chr4.1:75159285-75159304 | MS.gene87572:intron | 30.0% |
| !! | TTAATGTGATTGGTTTAGGT+TGG | + | chr4.1:75156212-75156231 | MS.gene87572:intron | 30.0% |
| !!! | TTAAGGCGTGGTTTTATTAA+GGG | + | chr4.1:75157198-75157217 | MS.gene87572:intron | 30.0% |
| !!! | TTGTTATTTTCCTCTGTAAC+TGG | + | chr4.1:75157737-75157756 | MS.gene87572:intron | 30.0% |
| AAATGCACACAAGAAACAAG+GGG | - | chr4.1:75156495-75156514 | None:intergenic | 35.0% | |
| AAGTCTACAATCCAGAAAAG+GGG | + | chr4.1:75157362-75157381 | MS.gene87572:CDS | 35.0% | |
| AAGTCTTAAGTGCCCATAAT+TGG | + | chr4.1:75159375-75159394 | MS.gene87572:intron | 35.0% | |
| AATAAGCCCCAACCAATTAT+GGG | - | chr4.1:75159390-75159409 | None:intergenic | 35.0% | |
| AATGGTTCAATGTTTAGCTG+AGG | + | chr4.1:75160415-75160434 | MS.gene87572:intron | 35.0% | |
| ACCAATTATGAGCACTCAAA+AGG | - | chr4.1:75159417-75159436 | None:intergenic | 35.0% | |
| AGAAGTCTACAATCCAGAAA+AGG | + | chr4.1:75157360-75157379 | MS.gene87572:CDS | 35.0% | |
| AGAATATGAGTGAGTAGTGA+TGG | - | chr4.1:75158401-75158420 | None:intergenic | 35.0% | |
| AGTGAAACTACTAGGAAAAG+AGG | - | chr4.1:75158307-75158326 | None:intergenic | 35.0% | |
| AGTGAGTAGTGATGGTTAAT+AGG | - | chr4.1:75158393-75158412 | None:intergenic | 35.0% | |
| ATAACAAACCTGGAAGAAAG+AGG | - | chr4.1:75160163-75160182 | None:intergenic | 35.0% | |
| ATACATACAACATTAGGTGC+CGG | - | chr4.1:75155949-75155968 | None:intergenic | 35.0% | |
| ATACCCTTGTTAATCTTGGT+TGG | - | chr4.1:75160264-75160283 | None:intergenic | 35.0% | |
| ATATCCAAAGCAATGTTCAG+AGG | - | chr4.1:75156665-75156684 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr4.1:75160258-75160277 | MS.gene87572:CDS | 35.0% | |
| ATGTGGTGTTCATAATTGGT+TGG | + | chr4.1:75159489-75159508 | MS.gene87572:intron | 35.0% | |
| ATTATGGGCACTTAAGACTT+CGG | - | chr4.1:75159375-75159394 | None:intergenic | 35.0% | |
| CTCATTAAGAAAGGAGACAA+AGG | + | chr4.1:75160309-75160328 | MS.gene87572:CDS | 35.0% | |
| CTTGTGGAACTCATTAAGAA+AGG | + | chr4.1:75160300-75160319 | MS.gene87572:CDS | 35.0% | |
| CTTTCTTAATGAGTTCCACA+AGG | - | chr4.1:75160302-75160321 | None:intergenic | 35.0% | |
| GAAGTCTACAATCCAGAAAA+GGG | + | chr4.1:75157361-75157380 | MS.gene87572:CDS | 35.0% | |
| GAATGGTAACATGATGCTTA+AGG | + | chr4.1:75157181-75157200 | MS.gene87572:intron | 35.0% | |
| GACATGAAGATACTGTCAAT+GGG | + | chr4.1:75156915-75156934 | MS.gene87572:CDS | 35.0% | |
| GGAAACAATCAAGAAACTGA+AGG | + | chr4.1:75157930-75157949 | MS.gene87572:CDS | 35.0% | |
| GTAGCTTAAGGTAATGAAAG+AGG | + | chr4.1:75157770-75157789 | MS.gene87572:intron | 35.0% | |
| GTGAGTAGTGATGGTTAATA+GGG | - | chr4.1:75158392-75158411 | None:intergenic | 35.0% | |
| GTGCACCGAATATATATTAG+TGG | + | chr4.1:75158886-75158905 | MS.gene87572:intron | 35.0% | |
| TAACTCCCTTCCTAAAAGAA+TGG | - | chr4.1:75158351-75158370 | None:intergenic | 35.0% | |
| TAAGAACCGTAACTCTTGAT+TGG | + | chr4.1:75158934-75158953 | MS.gene87572:intron | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr4.1:75160263-75160282 | None:intergenic | 35.0% | |
| TATATGCGACACAAATGATC+CGG | - | chr4.1:75159597-75159616 | None:intergenic | 35.0% | |
| TCATACAATGTTGTGAATCG+CGG | + | chr4.1:75155989-75156008 | MS.gene87572:intron | 35.0% | |
| TGACATGAAGATACTGTCAA+TGG | + | chr4.1:75156914-75156933 | MS.gene87572:CDS | 35.0% | |
| TGCTTTCCAAGTTAAGCATT+AGG | + | chr4.1:75160353-75160372 | MS.gene87572:intron | 35.0% | |
| TGTTCCTGATGATTCACATA+AGG | + | chr4.1:75157474-75157493 | MS.gene87572:CDS | 35.0% | |
| TGTTGAAATCATTACCCTTG+TGG | + | chr4.1:75160284-75160303 | MS.gene87572:CDS | 35.0% | |
| TTAAGAAAGGAGACAAAGGT+TGG | + | chr4.1:75160313-75160332 | MS.gene87572:intron | 35.0% | |
| TTAAGTGCCCATAATTGGTT+GGG | + | chr4.1:75159380-75159399 | MS.gene87572:intron | 35.0% | |
| TTCACATAAGGTAGCTGAAT+TGG | + | chr4.1:75157486-75157505 | MS.gene87572:CDS | 35.0% | |
| ! | ATGGAGGCATATGATTTCTT+CGG | - | chr4.1:75157532-75157551 | None:intergenic | 35.0% |
| ! | GCTGCTAGCTAATAACTTTT+TGG | + | chr4.1:75158254-75158273 | MS.gene87572:intron | 35.0% |
| ! | TATGGATTGAGTGTTAGAAG+TGG | + | chr4.1:75156801-75156820 | MS.gene87572:intron | 35.0% |
| ! | TTATTTTCCTCTGTAACTGG+TGG | + | chr4.1:75157740-75157759 | MS.gene87572:intron | 35.0% |
| !! | AAAGGCATCAGCAAGTAATT+AGG | - | chr4.1:75156720-75156739 | None:intergenic | 35.0% |
| !! | AAGCATAGTGCCATTCTTTT+AGG | + | chr4.1:75158338-75158357 | MS.gene87572:intron | 35.0% |
| !! | ATAGTGCCATTCTTTTAGGA+AGG | + | chr4.1:75158342-75158361 | MS.gene87572:intron | 35.0% |
| !! | GAGCCAAGAGTATTAAAACA+TGG | - | chr4.1:75156589-75156608 | None:intergenic | 35.0% |
| !! | TAGTGCCATTCTTTTAGGAA+GGG | + | chr4.1:75158343-75158362 | MS.gene87572:intron | 35.0% |
| !!! | CTTAAGGCGTGGTTTTATTA+AGG | + | chr4.1:75157197-75157216 | MS.gene87572:intron | 35.0% |
| !!! | TTTCTTTTGGTGCCCATAAT+TGG | + | chr4.1:75159450-75159469 | MS.gene87572:intron | 35.0% |
| AAAACCTATGCACATGCTCT+GGG | - | chr4.1:75156280-75156299 | None:intergenic | 40.0% | |
| AAAGGGCCTAATGCTTAACT+TGG | - | chr4.1:75160362-75160381 | None:intergenic | 40.0% | |
| AAGGAACCTGATCATGACAT+TGG | + | chr4.1:75157140-75157159 | MS.gene87572:CDS | 40.0% | |
| AATGATTCACAGAAAGCAGC+TGG | + | chr4.1:75157442-75157461 | MS.gene87572:CDS | 40.0% | |
| ACAAAGTAGCCTTTCTCTTG+AGG | - | chr4.1:75157080-75157099 | None:intergenic | 40.0% | |
| ACAAATGCACGACACCTTAA+AGG | - | chr4.1:75159626-75159645 | None:intergenic | 40.0% | |
| ACACCAATGCATAGGCATAT+GGG | - | chr4.1:75156622-75156641 | None:intergenic | 40.0% | |
| ACCACAAGCCCATAAGAAAA+GGG | - | chr4.1:75160379-75160398 | None:intergenic | 40.0% | |
| ACGAGAGATCGTAAAGTAAG+AGG | + | chr4.1:75158477-75158496 | MS.gene87572:intron | 40.0% | |
| ACTTGTGAGAAATCTCACCA+AGG | - | chr4.1:75159853-75159872 | None:intergenic | 40.0% | |
| AGAACAGACTCTTACAATGG+AGG | - | chr4.1:75157548-75157567 | None:intergenic | 40.0% | |
| AGAATGAGCAAGAAAGGAAG+AGG | - | chr4.1:75157579-75157598 | None:intergenic | 40.0% | |
| AGAATGGCACTATGCTTATG+AGG | - | chr4.1:75158335-75158354 | None:intergenic | 40.0% | |
| AGCATCATGTTACCATTCTC+AGG | - | chr4.1:75157179-75157198 | None:intergenic | 40.0% | |
| ATTTATTTGAAAGGGCTGCC+TGG | + | chr4.1:75158097-75158116 | MS.gene87572:CDS | 40.0% | |
| CAAACCTCTGAACATTGCTT+TGG | + | chr4.1:75156658-75156677 | MS.gene87572:intron | 40.0% | |
| CAATAAGCCCCAACCAATTA+TGG | - | chr4.1:75159391-75159410 | None:intergenic | 40.0% | |
| CAATCAAGAAACTGAAGGTC+TGG | + | chr4.1:75157935-75157954 | MS.gene87572:intron | 40.0% | |
| CACCAAAGGTTCACATATCT+CGG | - | chr4.1:75159828-75159847 | None:intergenic | 40.0% | |
| CACTGGGTTTATGATAGGAA+AGG | + | chr4.1:75157013-75157032 | MS.gene87572:CDS | 40.0% | |
| CATACAATGTTGTGAATCGC+GGG | + | chr4.1:75155990-75156009 | MS.gene87572:intron | 40.0% | |
| CATCAGCAAGTAATTAGGTG+GGG | - | chr4.1:75156715-75156734 | None:intergenic | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr4.1:75160257-75160276 | MS.gene87572:CDS | 40.0% | |
| CCTATTTCATTTCACCAAGC+AGG | + | chr4.1:75156887-75156906 | MS.gene87572:intron | 40.0% | |
| CGCATATAGGTCAACCTTTA+AGG | + | chr4.1:75159609-75159628 | MS.gene87572:intron | 40.0% | |
| CTTAAGTGCCCATAATTGGT+TGG | + | chr4.1:75159379-75159398 | MS.gene87572:intron | 40.0% | |
| CTTCATGTCAATTTCCTGCT+TGG | - | chr4.1:75156904-75156923 | None:intergenic | 40.0% | |
| CTTCGGCACTTCTTCAATTT+GGG | - | chr4.1:75157515-75157534 | None:intergenic | 40.0% | |
| GAATGAGCAAGAAAGGAAGA+GGG | - | chr4.1:75157578-75157597 | None:intergenic | 40.0% | |
| GCATCAGCAAGTAATTAGGT+GGG | - | chr4.1:75156716-75156735 | None:intergenic | 40.0% | |
| GCTACCTTATGTGAATCATC+AGG | - | chr4.1:75157481-75157500 | None:intergenic | 40.0% | |
| GGAATTTCAACAAGAACCTC+AGG | - | chr4.1:75157421-75157440 | None:intergenic | 40.0% | |
| GGATCATTTGTGTCGCATAT+AGG | + | chr4.1:75159596-75159615 | MS.gene87572:CDS | 40.0% | |
| GGGTATGTGGTGTTCATAAT+TGG | + | chr4.1:75159485-75159504 | MS.gene87572:intron | 40.0% | |
| GGGTTATAGTGAACTTAGTG+CGG | + | chr4.1:75156935-75156954 | MS.gene87572:CDS | 40.0% | |
| GTGTAATCAGTGTCTCTAGT+AGG | + | chr4.1:75159228-75159247 | MS.gene87572:intron | 40.0% | |
| TAAAACCTATGCACATGCTC+TGG | - | chr4.1:75156281-75156300 | None:intergenic | 40.0% | |
| TAAGTGCCCATAATTGGTTG+GGG | + | chr4.1:75159381-75159400 | MS.gene87572:intron | 40.0% | |
| TAATCAGTGTCTCTAGTAGG+TGG | + | chr4.1:75159231-75159250 | MS.gene87572:intron | 40.0% | |
| TACACCAATGCATAGGCATA+TGG | - | chr4.1:75156623-75156642 | None:intergenic | 40.0% | |
| TACCAAGATGTCAGTAAGCT+TGG | + | chr4.1:75156299-75156318 | MS.gene87572:CDS | 40.0% | |
| TCTTCGGCACTTCTTCAATT+TGG | - | chr4.1:75157516-75157535 | None:intergenic | 40.0% | |
| TGAGTGCTCATAATTGGTTG+AGG | + | chr4.1:75159419-75159438 | MS.gene87572:intron | 40.0% | |
| TGATAACAACTTACAGTGGG+AGG | + | chr4.1:75159800-75159819 | MS.gene87572:intron | 40.0% | |
| TTATGGGCACTTAAGACTTC+GGG | - | chr4.1:75159374-75159393 | None:intergenic | 40.0% | |
| TTCAGAGAATCAAGTTCCTC+CGG | + | chr4.1:75155927-75155946 | MS.gene87572:CDS | 40.0% | |
| TTCATAATTGGTTGGAGCCA+CGG | + | chr4.1:75159497-75159516 | MS.gene87572:intron | 40.0% | |
| TTGGTCACTGGGTTTATGAT+AGG | + | chr4.1:75157008-75157027 | MS.gene87572:CDS | 40.0% | |
| ! | AGAACTTTTGTCGCCCTTTA+AGG | + | chr4.1:75159561-75159580 | MS.gene87572:CDS | 40.0% |
| ! | AGAGATTTGGAGTCAAACCT+TGG | + | chr4.1:75158667-75158686 | MS.gene87572:intron | 40.0% |
| ! | AGCATTAGGCCCTTTTCTTA+TGG | + | chr4.1:75160367-75160386 | MS.gene87572:intron | 40.0% |
| ! | ATACCTTTGCTGTCCTAACT+TGG | - | chr4.1:75158189-75158208 | None:intergenic | 40.0% |
| ! | CCTGCTTGGTGAAATGAAAT+AGG | - | chr4.1:75156890-75156909 | None:intergenic | 40.0% |
| ! | GAACTTTTGTCGCCCTTTAA+GGG | + | chr4.1:75159562-75159581 | MS.gene87572:CDS | 40.0% |
| ! | GAGATTTGGAGTCAAACCTT+GGG | + | chr4.1:75158668-75158687 | MS.gene87572:intron | 40.0% |
| ! | GAGTCTAGAATGAGCAAGAA+AGG | - | chr4.1:75157585-75157604 | None:intergenic | 40.0% |
| ! | GCATTAGGCCCTTTTCTTAT+GGG | + | chr4.1:75160368-75160387 | MS.gene87572:intron | 40.0% |
| ! | GCTGCTTTCTGTGAATCATT+AGG | - | chr4.1:75157442-75157461 | None:intergenic | 40.0% |
| ! | GTCTAAAGTTATGACCAGCT+AGG | + | chr4.1:75159873-75159892 | MS.gene87572:intron | 40.0% |
| !! | GACAGCAAAGGTATTTCACT+TGG | + | chr4.1:75158195-75158214 | MS.gene87572:intron | 40.0% |
| !! | GCCTTTTGAGTGCTCATAAT+TGG | + | chr4.1:75159413-75159432 | MS.gene87572:intron | 40.0% |
| !! | TACTTGGAATGGATTGGGTT+GGG | - | chr4.1:75158526-75158545 | None:intergenic | 40.0% |
| !! | TCTTTTAGGAAGGGAGTTAG+TGG | + | chr4.1:75158352-75158371 | MS.gene87572:intron | 40.0% |
| !! | TGAGGCTCGTTGTTTTCTTT+TGG | + | chr4.1:75159437-75159456 | MS.gene87572:intron | 40.0% |
| !! | TTACTTGGAATGGATTGGGT+TGG | - | chr4.1:75158527-75158546 | None:intergenic | 40.0% |
| !! | TTTGGTGCCCATAATTGGTT+GGG | + | chr4.1:75159455-75159474 | MS.gene87572:intron | 40.0% |
| !!! | TTTTGGTGCCCATAATTGGT+TGG | + | chr4.1:75159454-75159473 | MS.gene87572:intron | 40.0% |
| AACAGATCCACCAGTTACAG+AGG | - | chr4.1:75157750-75157769 | None:intergenic | 45.0% | |
| AAGGTCTCTACTTCAACCCA+AGG | - | chr4.1:75158687-75158706 | None:intergenic | 45.0% | |
| AAGTTTGGCCCTATCAAGAG+TGG | + | chr4.1:75158157-75158176 | MS.gene87572:CDS | 45.0% | |
| AATAGCCCTCAGCTGTCAAA+AGG | - | chr4.1:75158075-75158094 | None:intergenic | 45.0% | |
| ACACCCATATGCCTATGCAT+TGG | + | chr4.1:75156616-75156635 | MS.gene87572:intron | 45.0% | |
| ACTCTTGTGCATCCACAGAT+AGG | - | chr4.1:75156965-75156984 | None:intergenic | 45.0% | |
| AGGTGGGAAGTGAAACTACT+AGG | - | chr4.1:75158315-75158334 | None:intergenic | 45.0% | |
| AGTGCTATAGTGCCGCAAAT+AGG | + | chr4.1:75156053-75156072 | MS.gene87572:intron | 45.0% | |
| ATATCTGTGACTGCTGAGGA+TGG | + | chr4.1:75157322-75157341 | MS.gene87572:CDS | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr4.1:75160152-75160171 | MS.gene87572:CDS | 45.0% | |
| ATGGCACTATGCTTATGAGG+TGG | - | chr4.1:75158332-75158351 | None:intergenic | 45.0% | |
| CAACAAGGTCATCTTCAGTG+AGG | - | chr4.1:75160448-75160467 | None:intergenic | 45.0% | |
| CAATTATGAACACTCCACCG+TGG | - | chr4.1:75159517-75159536 | None:intergenic | 45.0% | |
| CACAGAAGCAGCTGTCATTA+CGG | - | chr4.1:75157811-75157830 | None:intergenic | 45.0% | |
| CATGTTACCATTCTCAGGAG+AGG | - | chr4.1:75157174-75157193 | None:intergenic | 45.0% | |
| CCAACACTGAAAGAAGGTTG+AGG | - | chr4.1:75157267-75157286 | None:intergenic | 45.0% | |
| CCTCAACCTTCTTTCAGTGT+TGG | + | chr4.1:75157264-75157283 | MS.gene87572:intron | 45.0% | |
| CCTGAACCAGATGGTATCAT+CGG | + | chr4.1:75156326-75156345 | MS.gene87572:CDS | 45.0% | |
| CGGATATCACCTCCCTTAAA+GGG | - | chr4.1:75159577-75159596 | None:intergenic | 45.0% | |
| CTCCGAGATATGTGAACCTT+TGG | + | chr4.1:75159823-75159842 | MS.gene87572:intron | 45.0% | |
| CTTGGAAAGCAATGCAGCTT+CGG | - | chr4.1:75160344-75160363 | None:intergenic | 45.0% | |
| GACCAAGCTTACTGACATCT+TGG | - | chr4.1:75156304-75156323 | None:intergenic | 45.0% | |
| GACCACAAGCCCATAAGAAA+AGG | - | chr4.1:75160380-75160399 | None:intergenic | 45.0% | |
| GAGGATCCAACACTGAAAGA+AGG | - | chr4.1:75157273-75157292 | None:intergenic | 45.0% | |
| GAGTCATTGTCTTGGTCACT+GGG | + | chr4.1:75156997-75157016 | MS.gene87572:CDS | 45.0% | |
| GCAAATATCTGTGACTGCTG+AGG | + | chr4.1:75157318-75157337 | MS.gene87572:CDS | 45.0% | |
| GCAAGTGTCTGTTGAAGAAG+AGG | + | chr4.1:75157384-75157403 | MS.gene87572:CDS | 45.0% | |
| GCAGTCACAGATATTTGCTC+TGG | - | chr4.1:75157316-75157335 | None:intergenic | 45.0% | |
| GGAGATCCAATGTCATGATC+AGG | - | chr4.1:75157149-75157168 | None:intergenic | 45.0% | |
| GGCATCAGCAAGTAATTAGG+TGG | - | chr4.1:75156717-75156736 | None:intergenic | 45.0% | |
| GGTGCAGTTTCTCTCTAAGT+GGG | - | chr4.1:75158427-75158446 | None:intergenic | 45.0% | |
| GGTGGATCTGTTGTAGCTTA+AGG | + | chr4.1:75157758-75157777 | MS.gene87572:intron | 45.0% | |
| GGTTGTTACAGAGTTCCTCA+AGG | + | chr4.1:75160111-75160130 | MS.gene87572:intron | 45.0% | |
| GTAACATGATGCTTAAGGCG+TGG | + | chr4.1:75157186-75157205 | MS.gene87572:intron | 45.0% | |
| GTCAACACCCAAAACAACAG+CGG | - | chr4.1:75159654-75159673 | None:intergenic | 45.0% | |
| GTTGTCCTCTCATACCTCAT+GGG | + | chr4.1:75156467-75156486 | MS.gene87572:intron | 45.0% | |
| TATGAACACCACATACCCCA+CGG | - | chr4.1:75159483-75159502 | None:intergenic | 45.0% | |
| TCAACAAGAACCTCAGGAAC+AGG | - | chr4.1:75157415-75157434 | None:intergenic | 45.0% | |
| TCCAGTGTGCCAGAAACAAA+TGG | + | chr4.1:75157882-75157901 | MS.gene87572:CDS | 45.0% | |
| TGCATACATTCATTGTCGCG+TGG | + | chr4.1:75159329-75159348 | MS.gene87572:intron | 45.0% | |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr4.1:75160153-75160172 | None:intergenic | 45.0% | |
| TGGCACTATGCTTATGAGGT+GGG | - | chr4.1:75158331-75158350 | None:intergenic | 45.0% | |
| TGGTGCAGTTTCTCTCTAAG+TGG | - | chr4.1:75158428-75158447 | None:intergenic | 45.0% | |
| TGTCCAAGTTAGGACAGCAA+AGG | + | chr4.1:75158183-75158202 | MS.gene87572:CDS | 45.0% | |
| TTCGGGTCCCAACCAATTAT+GGG | - | chr4.1:75159357-75159376 | None:intergenic | 45.0% | |
| ! | ATGCACAAGAGTCTTTTGGC+GGG | + | chr4.1:75156973-75156992 | MS.gene87572:CDS | 45.0% |
| ! | ATGTTGTGAATCGCGGGTTA+TGG | + | chr4.1:75155996-75156015 | MS.gene87572:intron | 45.0% |
| ! | CACGGTGGAGTGTTCATAAT+TGG | + | chr4.1:75159515-75159534 | MS.gene87572:intron | 45.0% |
| ! | CCTTTAAGGGAGGTGATATC+CGG | + | chr4.1:75159575-75159594 | MS.gene87572:CDS | 45.0% |
| ! | GATGCACAAGAGTCTTTTGG+CGG | + | chr4.1:75156972-75156991 | MS.gene87572:CDS | 45.0% |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr4.1:75160152-75160171 | None:intergenic | 45.0% |
| ! | GTGGATGCACAAGAGTCTTT+TGG | + | chr4.1:75156969-75156988 | MS.gene87572:CDS | 45.0% |
| !! | ACCATTTGTTTCTGGCACAC+TGG | - | chr4.1:75157886-75157905 | None:intergenic | 45.0% |
| !! | ACTTGGAATGGATTGGGTTG+GGG | - | chr4.1:75158525-75158544 | None:intergenic | 45.0% |
| !! | TTTGTTTCTGGCACACTGGA+TGG | - | chr4.1:75157882-75157901 | None:intergenic | 45.0% |
| AAAGCCCAGAGCATGTGCAT+AGG | + | chr4.1:75156273-75156292 | MS.gene87572:CDS | 50.0% | |
| ACCAGCTAGGATGTGTCCTT+GGG | + | chr4.1:75159886-75159905 | MS.gene87572:intron | 50.0% | |
| AGAAGCAGCTGTCATTACGG+AGG | - | chr4.1:75157808-75157827 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGCTCA+CGG | - | chr4.1:75156369-75156388 | None:intergenic | 50.0% | |
| AGAGTTCCTCAAGGCAACAC+AGG | + | chr4.1:75160120-75160139 | MS.gene87572:intron | 50.0% | |
| AGGGCATGTGTAGCATTTCC+AGG | - | chr4.1:75158118-75158137 | None:intergenic | 50.0% | |
| ATAATTGGTTGGAGCCACGG+TGG | + | chr4.1:75159500-75159519 | MS.gene87572:intron | 50.0% | |
| ATAATTGGTTGGGACCCGTG+GGG | + | chr4.1:75159465-75159484 | MS.gene87572:intron | 50.0% | |
| ATGAACACCACATACCCCAC+GGG | - | chr4.1:75159482-75159501 | None:intergenic | 50.0% | |
| CACGGGTCCCAACCAATTAT+GGG | - | chr4.1:75159465-75159484 | None:intergenic | 50.0% | |
| CATAATTGGTTGGGACCCGT+GGG | + | chr4.1:75159464-75159483 | MS.gene87572:intron | 50.0% | |
| CATCGGCATCACAACCACAA+TGG | + | chr4.1:75156343-75156362 | MS.gene87572:CDS | 50.0% | |
| CCGGATATCACCTCCCTTAA+AGG | - | chr4.1:75159578-75159597 | None:intergenic | 50.0% | |
| CGTGGTGCCCATAATTGGTT+GGG | + | chr4.1:75159347-75159366 | MS.gene87572:intron | 50.0% | |
| CTAGTGCTGTCAAACAGCCA+CGG | - | chr4.1:75158792-75158811 | None:intergenic | 50.0% | |
| CTTCGGGTCCCAACCAATTA+TGG | - | chr4.1:75159358-75159377 | None:intergenic | 50.0% | |
| GAATGTATGCATGCGACACC+TGG | - | chr4.1:75159320-75159339 | None:intergenic | 50.0% | |
| GACTGCTGAGGATGGTGATA+GGG | + | chr4.1:75157330-75157349 | MS.gene87572:CDS | 50.0% | |
| GAGTATAGCTCCTTGTACCG+TGG | + | chr4.1:75158772-75158791 | MS.gene87572:intron | 50.0% | |
| GAGTTCCTCAAGGCAACACA+GGG | + | chr4.1:75160121-75160140 | MS.gene87572:intron | 50.0% | |
| GCAAGTAATTAGGTGGGGTC+TGG | - | chr4.1:75156710-75156729 | None:intergenic | 50.0% | |
| GGAGTCATTGTCTTGGTCAC+TGG | + | chr4.1:75156996-75157015 | MS.gene87572:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr4.1:75160243-75160262 | None:intergenic | 50.0% | |
| GGTTGTCCTCTCATACCTCA+TGG | + | chr4.1:75156466-75156485 | MS.gene87572:intron | 50.0% | |
| GTGATGCCGATGATACCATC+TGG | - | chr4.1:75156335-75156354 | None:intergenic | 50.0% | |
| TAGTGCGGAGATCCTATCTG+TGG | + | chr4.1:75156950-75156969 | MS.gene87572:CDS | 50.0% | |
| TGACTGCTGAGGATGGTGAT+AGG | + | chr4.1:75157329-75157348 | MS.gene87572:CDS | 50.0% | |
| TGTCAAACAGCCACGGTACA+AGG | - | chr4.1:75158785-75158804 | None:intergenic | 50.0% | |
| TTACCATTCTCAGGAGAGGC+AGG | - | chr4.1:75157170-75157189 | None:intergenic | 50.0% | |
| TTCCTTGCGCCTCAAGAGAA+AGG | + | chr4.1:75157068-75157087 | MS.gene87572:CDS | 50.0% | |
| TTTGGCCCTATCAAGAGTGG+CGG | + | chr4.1:75158160-75158179 | MS.gene87572:CDS | 50.0% | |
| ! | ACAGACACTTGCCCCTTTTC+TGG | - | chr4.1:75157376-75157395 | None:intergenic | 50.0% |
| ! | CCGATGATACCATCTGGTTC+AGG | - | chr4.1:75156329-75156348 | None:intergenic | 50.0% |
| ! | GCCCTTTTCTTATGGGCTTG+TGG | + | chr4.1:75160375-75160394 | MS.gene87572:intron | 50.0% |
| ! | GGTTGCCTTTTGACAGCTGA+GGG | + | chr4.1:75158067-75158086 | MS.gene87572:intron | 50.0% |
| ! | TGCACAAGAGTCTTTTGGCG+GGG | + | chr4.1:75156974-75156993 | MS.gene87572:CDS | 50.0% |
| ! | TGGTTGCCTTTTGACAGCTG+AGG | + | chr4.1:75158066-75158085 | MS.gene87572:intron | 50.0% |
| !! | AGAAACAAGGGGTACCCATG+AGG | - | chr4.1:75156484-75156503 | None:intergenic | 50.0% |
| !! | CATACAACATTAGGTGCCGG+AGG | - | chr4.1:75155946-75155965 | None:intergenic | 50.0% |
| !! | CTTTTGTCGCCCTTTAAGGG+AGG | + | chr4.1:75159565-75159584 | MS.gene87572:CDS | 50.0% |
| !! | TGTCGAGTCCGCTGTTGTTT+TGG | + | chr4.1:75159643-75159662 | MS.gene87572:intron | 50.0% |
| !!! | GTCGAGTCCGCTGTTGTTTT+GGG | + | chr4.1:75159644-75159663 | MS.gene87572:intron | 50.0% |
| ACCCAAGGACACATCCTAGC+TGG | - | chr4.1:75159890-75159909 | None:intergenic | 55.0% | |
| ACTTGTGTCTCCAGCACAGG+AGG | - | chr4.1:75157292-75157311 | None:intergenic | 55.0% | |
| AGAGGAAGCTCCTGTTCCTG+AGG | + | chr4.1:75157402-75157421 | MS.gene87572:CDS | 55.0% | |
| AGAGTGGCGGTGTCCAAGTT+AGG | + | chr4.1:75158173-75158192 | MS.gene87572:CDS | 55.0% | |
| AGCCTTTCTCTTGAGGCGCA+AGG | - | chr4.1:75157073-75157092 | None:intergenic | 55.0% | |
| ATCTCACCAAGGCGCACCAA+AGG | - | chr4.1:75159842-75159861 | None:intergenic | 55.0% | |
| CCACGGGTCCCAACCAATTA+TGG | - | chr4.1:75159466-75159485 | None:intergenic | 55.0% | |
| CCATAATTGGTTGGGACCCG+TGG | + | chr4.1:75159355-75159374 | MS.gene87572:intron | 55.0% | |
| CTTGGTCGTCCTGAACCAGA+TGG | + | chr4.1:75156317-75156336 | MS.gene87572:CDS | 55.0% | |
| GACCAGCTAGGATGTGTCCT+TGG | + | chr4.1:75159885-75159904 | MS.gene87572:intron | 55.0% | |
| GCAGCTGTCATTACGGAGGA+CGG | - | chr4.1:75157804-75157823 | None:intergenic | 55.0% | |
| GCGTGGTGCCCATAATTGGT+TGG | + | chr4.1:75159346-75159365 | MS.gene87572:intron | 55.0% | |
| GGAACTTGTGTCTCCAGCAC+AGG | - | chr4.1:75157295-75157314 | None:intergenic | 55.0% | |
| GGACACCGCCACTCTTGATA+GGG | - | chr4.1:75158168-75158187 | None:intergenic | 55.0% | |
| GGGTACCCATGAGGTATGAG+AGG | - | chr4.1:75156475-75156494 | None:intergenic | 55.0% | |
| TCAAGCCCTGTGTTGCCTTG+AGG | - | chr4.1:75160129-75160148 | None:intergenic | 55.0% | |
| TCTCCTGCCTCTCCTGAGAA+TGG | + | chr4.1:75157164-75157183 | MS.gene87572:CDS | 55.0% | |
| TCTGGCACACTGGATGGTGA+AGG | - | chr4.1:75157876-75157895 | None:intergenic | 55.0% | |
| TGGACACCGCCACTCTTGAT+AGG | - | chr4.1:75158169-75158188 | None:intergenic | 55.0% | |
| TGTCGCGTGGTGCCCATAAT+TGG | + | chr4.1:75159342-75159361 | MS.gene87572:intron | 55.0% | |
| ! | AGTGTTGGATCCTCCTGTGC+TGG | + | chr4.1:75157279-75157298 | MS.gene87572:intron | 55.0% |
| ! | GCACAAGAGTCTTTTGGCGG+GGG | + | chr4.1:75156975-75156994 | MS.gene87572:CDS | 55.0% |
| ! | TGTGAACCTTTGGTGCGCCT+TGG | + | chr4.1:75159833-75159852 | MS.gene87572:intron | 55.0% |
| GAGAGAGCTCACGGCCATTG+TGG | - | chr4.1:75156360-75156379 | None:intergenic | 60.0% | |
| TGGCGGGGGAGTCATTGTCT+TGG | + | chr4.1:75156989-75157008 | MS.gene87572:CDS | 60.0% | |
| GTTGGGACCCGTGGGGTATG+TGG | + | chr4.1:75159472-75159491 | MS.gene87572:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 75155919 | 75160543 | 75155919 | ID=MS.gene87572 |
| chr4.1 | mRNA | 75155919 | 75160543 | 75155919 | ID=MS.gene87572.t1;Parent=MS.gene87572 |
| chr4.1 | exon | 75155919 | 75155960 | 75155919 | ID=MS.gene87572.t1.exon1;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75155919 | 75155960 | 75155919 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75156254 | 75156367 | 75156254 | ID=MS.gene87572.t1.exon2;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75156254 | 75156367 | 75156254 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75156909 | 75157185 | 75156909 | ID=MS.gene87572.t1.exon3;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75156909 | 75157185 | 75156909 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75157281 | 75157552 | 75157281 | ID=MS.gene87572.t1.exon4;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75157281 | 75157552 | 75157281 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75157774 | 75157951 | 75157774 | ID=MS.gene87572.t1.exon5;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75157774 | 75157951 | 75157774 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75158083 | 75158204 | 75158083 | ID=MS.gene87572.t1.exon6;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75158083 | 75158204 | 75158083 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75159106 | 75159132 | 75159106 | ID=MS.gene87572.t1.exon7;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75159106 | 75159132 | 75159106 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75159544 | 75159617 | 75159544 | ID=MS.gene87572.t1.exon8;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75159544 | 75159617 | 75159544 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75160122 | 75160173 | 75160122 | ID=MS.gene87572.t1.exon9;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75160122 | 75160173 | 75160122 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75160249 | 75160330 | 75160249 | ID=MS.gene87572.t1.exon10;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75160249 | 75160330 | 75160249 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| chr4.1 | exon | 75160533 | 75160543 | 75160533 | ID=MS.gene87572.t1.exon11;Parent=MS.gene87572.t1 |
| chr4.1 | CDS | 75160533 | 75160543 | 75160533 | ID=cds.MS.gene87572.t1;Parent=MS.gene87572.t1 |
| Gene Sequence |
| Protein sequence |
