Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87625.t1 | XP_003605929.1 | 99.2 | 898 | 7 | 0 | 1 | 898 | 82 | 979 | 0.00E+00 | 1813.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87625.t1 | P49608 | 91.3 | 898 | 78 | 0 | 1 | 898 | 1 | 898 | 0.0e+00 | 1691.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87625.t1 | G7JDJ4 | 99.2 | 898 | 7 | 0 | 1 | 898 | 82 | 979 | 0.0e+00 | 1813.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014952 | MS.gene87625 | PPI |
| MS.gene041065 | MS.gene87625 | PPI |
| MS.gene87625 | MS.gene02695 | PPI |
| MS.gene87625 | MS.gene90508 | PPI |
| MS.gene87625 | MS.gene42646 | PPI |
| MS.gene32746 | MS.gene87625 | PPI |
| MS.gene87625 | MS.gene011805 | PPI |
| MS.gene87625 | MS.gene99212 | PPI |
| MS.gene56790 | MS.gene87625 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87625.t1 | MTR_4g048190 | 99.220 | 898 | 7 | 0 | 1 | 898 | 82 | 979 | 0.0 | 1848 |
| MS.gene87625.t1 | MTR_2g088360 | 93.757 | 897 | 56 | 0 | 2 | 898 | 83 | 979 | 0.0 | 1761 |
| MS.gene87625.t1 | MTR_5g022940 | 84.950 | 897 | 134 | 1 | 1 | 896 | 1 | 897 | 0.0 | 1612 |
| MS.gene87625.t1 | MTR_1g075520 | 77.531 | 899 | 194 | 2 | 1 | 898 | 4 | 895 | 0.0 | 1459 |
| MS.gene87625.t1 | MTR_5g022940 | 85.372 | 793 | 116 | 0 | 104 | 896 | 1 | 793 | 0.0 | 1440 |
| MS.gene87625.t1 | MTR_2g067620 | 83.333 | 576 | 58 | 6 | 55 | 612 | 134 | 689 | 0.0 | 930 |
| MS.gene87625.t1 | MTR_2g067620 | 73.494 | 166 | 14 | 1 | 763 | 898 | 700 | 865 | 8.55e-68 | 243 |
| MS.gene87625.t1 | MTR_4g115490 | 63.889 | 144 | 26 | 2 | 579 | 721 | 154 | 272 | 1.46e-50 | 179 |
| MS.gene87625.t1 | MTR_4g074000 | 43.077 | 130 | 61 | 2 | 701 | 817 | 1 | 130 | 9.44e-23 | 98.2 |
| MS.gene87625.t1 | MTR_1g045750 | 24.688 | 401 | 220 | 13 | 183 | 570 | 166 | 497 | 3.26e-16 | 83.2 |
| MS.gene87625.t1 | MTR_1g073200 | 26.010 | 396 | 239 | 14 | 183 | 570 | 170 | 519 | 5.71e-13 | 72.8 |
| MS.gene87625.t1 | MTR_4g048070 | 43.478 | 92 | 31 | 2 | 761 | 852 | 83 | 153 | 2.28e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87625.t1 | AT2G05710 | 90.757 | 898 | 83 | 0 | 1 | 898 | 93 | 990 | 0.0 | 1715 |
| MS.gene87625.t1 | AT4G35830 | 84.633 | 898 | 138 | 0 | 1 | 898 | 1 | 898 | 0.0 | 1610 |
| MS.gene87625.t1 | AT4G26970 | 83.240 | 895 | 150 | 0 | 1 | 895 | 98 | 992 | 0.0 | 1585 |
| MS.gene87625.t1 | AT4G35830 | 84.654 | 795 | 122 | 0 | 104 | 898 | 1 | 795 | 0.0 | 1430 |
| MS.gene87625.t1 | AT5G54950 | 62.903 | 62 | 23 | 0 | 821 | 882 | 1 | 62 | 4.44e-21 | 88.6 |
| MS.gene87625.t1 | AT4G13430 | 25.682 | 440 | 236 | 15 | 144 | 570 | 140 | 501 | 7.46e-17 | 85.1 |
Find 249 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAAAGTTGGGTTTA+AGG | 0.199704 | 4.1:+48949988 | MS.gene87625:CDS |
| AAGCCAGGTGGTGGCGAATT+TGG | 0.203158 | 4.1:+48946782 | MS.gene87625:CDS |
| GGCTCATGAGCTTGGTTTGC+AGG | 0.204736 | 4.1:+48951029 | MS.gene87625:CDS |
| CGCAAGGACTTCAATTCTTA+TGG | 0.210088 | 4.1:+48955492 | MS.gene87625:CDS |
| ATGGGCTTGGTGTTGCTGGC+TGG | 0.237227 | 4.1:+48948842 | MS.gene87625:CDS |
| TGTCAGAGATACAAGACTTC+TGG | 0.267854 | 4.1:+48956120 | MS.gene87625:intron |
| TGGGCTTGGTGTTGCTGGCT+GGG | 0.275759 | 4.1:+48948843 | MS.gene87625:CDS |
| CTCGTTGTTCCTCCTGGTTC+TGG | 0.283190 | 4.1:+48948609 | MS.gene87625:CDS |
| CGGAAATTATTACCGATTCT+TGG | 0.286253 | 4.1:-48946836 | None:intergenic |
| CATATCAGCCGCAACAAGAT+AGG | 0.291796 | 4.1:+48949735 | MS.gene87625:intron |
| GGTGTTGCTGGCTGGGGTGT+TGG | 0.292011 | 4.1:+48948850 | MS.gene87625:CDS |
| AAATGCAGTGCAGGCTAATA+TGG | 0.299347 | 4.1:+48948515 | MS.gene87625:CDS |
| GTTGGAATGTGAACTGTCTT+AGG | 0.299694 | 4.1:-48955603 | None:intergenic |
| ATAGATGGGCTTGGTGTTGC+TGG | 0.300366 | 4.1:+48948838 | MS.gene87625:CDS |
| GTAGCAGCTGCTGTGTTGTC+TGG | 0.301206 | 4.1:+48953527 | MS.gene87625:CDS |
| ACAACATGTATTGGCAATTC+AGG | 0.302030 | 4.1:+48951438 | MS.gene87625:CDS |
| GTTGTTGCTTATGCTCTTGC+TGG | 0.304994 | 4.1:+48953617 | MS.gene87625:CDS |
| CAGGTCAATCTTGAATATCT+TGG | 0.311696 | 4.1:+48948742 | MS.gene87625:intron |
| GCTAATATGTCTCCTGAATA+TGG | 0.311847 | 4.1:+48949403 | MS.gene87625:CDS |
| GAATAGGAACCTTACCTCTT+TGG | 0.312837 | 4.1:-48949815 | None:intergenic |
| GCCGGCCCGTGTTCTCTTGC+AGG | 0.317911 | 4.1:+48947758 | MS.gene87625:CDS |
| CCCATGGTGGCACCATATTC+AGG | 0.318308 | 4.1:-48949415 | None:intergenic |
| ATGTCTACCTCAGGGATATC+TGG | 0.325499 | 4.1:+48955031 | MS.gene87625:CDS |
| GCTTCTGCCATCTCAGAAAA+TGG | 0.328847 | 4.1:+48951480 | MS.gene87625:CDS |
| CAAATCTCTCCTTGTTTCTC+TGG | 0.328941 | 4.1:-48948548 | None:intergenic |
| CAGTTGTGACTTTGACATCT+TGG | 0.330697 | 4.1:-48956524 | None:intergenic |
| TTACAATATCTCAAGCTAAC+TGG | 0.332615 | 4.1:+48949463 | MS.gene87625:CDS |
| TCACATACAACTATGATAGA+TGG | 0.333043 | 4.1:+48948823 | MS.gene87625:CDS |
| GGCTGGTCTTGTAGCGAAAA+AGG | 0.338637 | 4.1:+48951008 | MS.gene87625:CDS |
| GTTGTTGGGTTCAAGCTATC+TGG | 0.346551 | 4.1:+48949127 | MS.gene87625:CDS |
| CTTGTTAACAAGCTCTTAAA+CGG | 0.349560 | 4.1:+48955570 | MS.gene87625:CDS |
| CCATCCTTCCCCGTTCCAAT+TGG | 0.353546 | 4.1:-48955003 | None:intergenic |
| AGTATGGCAGTGGAAGTTCT+AGG | 0.365798 | 4.1:+48956172 | MS.gene87625:CDS |
| CTTAGAAAGCACGGTGTTGT+AGG | 0.374489 | 4.1:+48949205 | MS.gene87625:CDS |
| TCTGCAATTTCTTCAGTAGA+TGG | 0.385681 | 4.1:-48955054 | None:intergenic |
| CAACATCTTCTTTAGTGACT+TGG | 0.386503 | 4.1:-48947680 | None:intergenic |
| TGCCAAGGGTCCAATGTTAT+TGG | 0.387232 | 4.1:+48956203 | MS.gene87625:CDS |
| GTCAGAGATACAAGACTTCT+GGG | 0.387249 | 4.1:+48956121 | MS.gene87625:intron |
| CTGCCATGCTTGAGCTCTGC+TGG | 0.392665 | 4.1:-48950925 | None:intergenic |
| GAGAAGGAGCCAATTGGAAC+GGG | 0.392945 | 4.1:+48954994 | MS.gene87625:CDS |
| GGGCTTGGTGTTGCTGGCTG+GGG | 0.393626 | 4.1:+48948844 | MS.gene87625:CDS |
| CAGCTGATACTCTCTACTCT+TGG | 0.393908 | 4.1:+48955271 | MS.gene87625:CDS |
| AGTCCCAGCTGTCGTGGACT+TGG | 0.397258 | 4.1:+48947894 | MS.gene87625:CDS |
| AGGAGAATTCTAATCGAGTA+TGG | 0.397433 | 4.1:-48947627 | None:intergenic |
| CTATCTTGCCTCACCTCCTC+TGG | 0.404253 | 4.1:+48953595 | MS.gene87625:CDS |
| CGCAGTAACTTGGTGGGAAT+GGG | 0.405387 | 4.1:+48956390 | MS.gene87625:CDS |
| CAATTCTTATGGAAGTCGTC+GGG | 0.408766 | 4.1:+48955503 | MS.gene87625:CDS |
| ACAAGTCTTGCTCCAGGCTC+TGG | 0.409104 | 4.1:+48951212 | MS.gene87625:CDS |
| AACATGCTCGTTGTTCCTCC+TGG | 0.410778 | 4.1:+48948603 | MS.gene87625:CDS |
| TTGTTAACAAGCTCTTAAAC+GGG | 0.410798 | 4.1:+48955571 | MS.gene87625:CDS |
| CATGTTAAGTTTCCCTTGAA+AGG | 0.411382 | 4.1:-48946752 | None:intergenic |
| GTGCTGGCTGGAGCTGAGTA+TGG | 0.414766 | 4.1:+48956156 | MS.gene87625:CDS |
| CTTTCAAAGGCACACGGTCG+TGG | 0.415053 | 4.1:-48949937 | None:intergenic |
| TCGCAGTAACTTGGTGGGAA+TGG | 0.420813 | 4.1:+48956389 | MS.gene87625:CDS |
| GTTGCTGGCTGGGGTGTTGG+AGG | 0.423749 | 4.1:+48948853 | MS.gene87625:CDS |
| CAAACCCAAGTGTTATGCTT+GGG | 0.423891 | 4.1:+48950986 | MS.gene87625:CDS |
| CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 4.1:+48948793 | MS.gene87625:CDS |
| CAAGCCAAGTCCACGACAGC+TGG | 0.426365 | 4.1:-48947898 | None:intergenic |
| CTCTTTGGTCCTGAGATACA+TGG | 0.434528 | 4.1:-48949800 | None:intergenic |
| TGGTCAACGACGAGATCAAC+AGG | 0.435639 | 4.1:-48948462 | None:intergenic |
| CAGTGGAAGTTCTAGGGATT+GGG | 0.436396 | 4.1:+48956179 | MS.gene87625:CDS |
| TCGTGTCTTGATAACAAAGT+TGG | 0.437653 | 4.1:+48949980 | MS.gene87625:CDS |
| ATGGTCATGTTCTTGAAGTA+TGG | 0.442787 | 4.1:-48955324 | None:intergenic |
| CGTGTCTTGATAACAAAGTT+GGG | 0.444181 | 4.1:+48949981 | MS.gene87625:CDS |
| GCAGTGGAAGTTCTAGGGAT+TGG | 0.445972 | 4.1:+48956178 | MS.gene87625:CDS |
| GACTTTGAGAAGGAGCCAAT+TGG | 0.446271 | 4.1:+48954988 | MS.gene87625:CDS |
| TGGTTCTGGTATAGTACATC+AGG | 0.450673 | 4.1:+48948623 | MS.gene87625:CDS |
| GTCAAAGTCACAACTGATAG+TGG | 0.454012 | 4.1:+48956531 | MS.gene87625:CDS |
| TTCTAGGGATTGGGCTGCCA+AGG | 0.455881 | 4.1:+48956188 | MS.gene87625:CDS |
| TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 4.1:+48948794 | MS.gene87625:CDS |
| ATCCCTCTTTGCTACAAACC+TGG | 0.456472 | 4.1:+48956417 | MS.gene87625:CDS |
| TTCAAATAAAATCAATCCTC+TGG | 0.461087 | 4.1:+48947954 | MS.gene87625:CDS |
| TGCTTATGCTCTTGCTGGCA+CGG | 0.461402 | 4.1:+48953622 | MS.gene87625:CDS |
| CCAGGCAAAACCATGCTCAT+AGG | 0.461883 | 4.1:-48949103 | None:intergenic |
| TACTGTCACCAAAGTTTAGC+AGG | 0.468344 | 4.1:-48955386 | None:intergenic |
| ATGGCAAGAATGTCTACCTC+AGG | 0.470291 | 4.1:+48955022 | MS.gene87625:CDS |
| CAAGACACCATTGTGCTGGC+TGG | 0.470520 | 4.1:+48956144 | MS.gene87625:CDS |
| GGTGTCAAAGCGTGCTATGC+AGG | 0.471292 | 4.1:-48956565 | None:intergenic |
| CCTGAATATGGTGCCACCAT+GGG | 0.471961 | 4.1:+48949415 | MS.gene87625:CDS |
| AATTCGCCACCACCTGGCTT+AGG | 0.472327 | 4.1:-48946779 | None:intergenic |
| CGATGATAGAGTCTTATCTC+AGG | 0.472591 | 4.1:+48949589 | MS.gene87625:CDS |
| ATGGATCCTCCTGGATCTCA+TGG | 0.473670 | 4.1:+48955345 | MS.gene87625:CDS |
| CGTTTAAGAGCTTGTTAACA+AGG | 0.476089 | 4.1:-48955569 | None:intergenic |
| CAACATGTATTGGCAATTCA+GGG | 0.476725 | 4.1:+48951439 | MS.gene87625:CDS |
| CACCAATAACATTGGACCCT+TGG | 0.477440 | 4.1:-48956205 | None:intergenic |
| AGAACACGGGCCGGCTTGAA+AGG | 0.479000 | 4.1:-48947750 | None:intergenic |
| ACCAAAGTTTAGCAGGCAAT+AGG | 0.479269 | 4.1:-48955379 | None:intergenic |
| TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 4.1:-48948799 | None:intergenic |
| TTTCAAAGGCACACGGTCGT+GGG | 0.479496 | 4.1:-48949936 | None:intergenic |
| ACCGATCATATTTCTCCAGC+TGG | 0.481229 | 4.1:+48955414 | MS.gene87625:CDS |
| TGAGGCAGCAATGCTCGGTC+AGG | 0.487131 | 4.1:+48948885 | MS.gene87625:CDS |
| GAACCCGGCCCTCAAAATTA+CGG | 0.487495 | 4.1:-48953553 | None:intergenic |
| AGCTGATACTCTCTACTCTT+GGG | 0.487717 | 4.1:+48955272 | MS.gene87625:CDS |
| AGTTGCGAATGGCGGATTCA+AGG | 0.488008 | 4.1:-48947647 | None:intergenic |
| CTTGCAGTTTGTTCCACATA+GGG | 0.488178 | 4.1:-48955245 | None:intergenic |
| ATGAGGTTACGTATGACATA+TGG | 0.489265 | 4.1:-48956760 | None:intergenic |
| AGCGAGTGAGAATCCTTTCA+AGG | 0.491964 | 4.1:+48946739 | MS.gene87625:intron |
| TTTGGCTGTACAACATGTAT+TGG | 0.492336 | 4.1:+48951429 | MS.gene87625:CDS |
| CGAGATGCTATGAATAAGCT+TGG | 0.492877 | 4.1:+48947925 | MS.gene87625:CDS |
| GAGAATTCATCGCAGTAACT+TGG | 0.493503 | 4.1:+48956380 | MS.gene87625:CDS |
| TATGTACTTCGGAACATGTC+AGG | 0.493929 | 4.1:-48955201 | None:intergenic |
| GTGACTTTGACATCTTGGCC+AGG | 0.494276 | 4.1:-48956519 | None:intergenic |
| TCCCTCTTTGCTACAAACCT+GGG | 0.494799 | 4.1:+48956418 | MS.gene87625:CDS |
| AAATGATGAGGTGATGGCGA+GGG | 0.495779 | 4.1:+48955527 | MS.gene87625:CDS |
| AATGTGTCTGCATCCTCCCC+AGG | 0.496499 | 4.1:-48956435 | None:intergenic |
| TGCTATACCAAAAGAGGCAC+AGG | 0.497558 | 4.1:+48950870 | MS.gene87625:CDS |
| TGTAATGTAACGTGATCCAC+AGG | 0.499453 | 4.1:-48949445 | None:intergenic |
| GCAGACACATTGGGATTGAC+TGG | 0.499598 | 4.1:+48956447 | MS.gene87625:CDS |
| TAGCAGCTGCTGTGTTGTCT+GGG | 0.503023 | 4.1:+48953528 | MS.gene87625:CDS |
| TCAGCCTTCATTTCTTTCAA+AGG | 0.504379 | 4.1:-48949950 | None:intergenic |
| TGAAAGAAATGAAGGCTGAC+TGG | 0.505538 | 4.1:+48949954 | MS.gene87625:CDS |
| TACAATATCTCAAGCTAACT+GGG | 0.505582 | 4.1:+48949464 | MS.gene87625:CDS |
| GGGGAGGATGCAGACACATT+GGG | 0.508251 | 4.1:+48956438 | MS.gene87625:CDS |
| GAAATTATCGCAGTTGCGAA+TGG | 0.508436 | 4.1:-48947658 | None:intergenic |
| TCTTTCACACCATGAGATCC+AGG | 0.508446 | 4.1:-48955354 | None:intergenic |
| CCAAGTGTTATGCTTGGGGC+TGG | 0.508975 | 4.1:+48950991 | MS.gene87625:CDS |
| GCCTATTGCCTGCTAAACTT+TGG | 0.509924 | 4.1:+48955378 | MS.gene87625:CDS |
| ATGTTGAGAAGATTATTGAC+TGG | 0.511410 | 4.1:+48947697 | MS.gene87625:CDS |
| AGCTTGAACCCAACAACTCC+AGG | 0.512315 | 4.1:-48949121 | None:intergenic |
| CCAATTGGAACGGGGAAGGA+TGG | 0.512474 | 4.1:+48955003 | MS.gene87625:CDS |
| TGGGCAAGACACCATTGTGC+TGG | 0.512533 | 4.1:+48956140 | MS.gene87625:CDS |
| AAGCTCTTAAACGGGGAAGT+TGG | 0.512658 | 4.1:+48955579 | MS.gene87625:CDS |
| CTTGTTAACAAGGCGAATGT+TGG | 0.512774 | 4.1:-48955559 | None:intergenic |
| ATATCAGCCGCAACAAGATA+GGG | 0.512846 | 4.1:+48949736 | MS.gene87625:intron |
| TTAGTAACAACTCCAGAGCC+TGG | 0.513461 | 4.1:-48951224 | None:intergenic |
| TTGGAATGTGAACTGTCTTA+GGG | 0.513630 | 4.1:-48955602 | None:intergenic |
| CAGTTCAAGTTGACGTGGCA+AGG | 0.514019 | 4.1:+48948487 | MS.gene87625:CDS |
| AAAATCAGTGAGATCAAGCC+TGG | 0.514843 | 4.1:+48956501 | MS.gene87625:CDS |
| CCACGTCAACTTGAACTGAA+TGG | 0.515185 | 4.1:-48948482 | None:intergenic |
| AAGACAGTTCACATTCCAAC+TGG | 0.516144 | 4.1:+48955606 | MS.gene87625:CDS |
| GTCAGCTTCACTGCTTAATG+AGG | 0.519524 | 4.1:-48956777 | None:intergenic |
| TTAGAAAGCACGGTGTTGTA+GGG | 0.521114 | 4.1:+48949206 | MS.gene87625:CDS |
| TTTCCAAATTCGCCACCACC+TGG | 0.521732 | 4.1:-48946785 | None:intergenic |
| ACATAAAGTTTCTCACCAGT+TGG | 0.523484 | 4.1:-48955621 | None:intergenic |
| GAACTTGCATACTTCAACCA+TGG | 0.524044 | 4.1:+48956727 | MS.gene87625:CDS |
| TCTCTGAATGATCCAAGAAT+CGG | 0.524068 | 4.1:+48946824 | MS.gene87625:CDS |
| TCCTGAATATGGTGCCACCA+TGG | 0.525236 | 4.1:+48949414 | MS.gene87625:CDS |
| ATGCTTGCAGCCTATGAGCA+TGG | 0.526901 | 4.1:+48949093 | MS.gene87625:intron |
| GTTCAACCCCACGCTCTAGT+AGG | 0.527414 | 4.1:-48955470 | None:intergenic |
| AAGGTCAGAAAATGCAGTGC+AGG | 0.529335 | 4.1:+48948506 | MS.gene87625:CDS |
| CACATACAACTATGATAGAT+GGG | 0.529419 | 4.1:+48948824 | MS.gene87625:CDS |
| GACGTAGAACCATGTATCTC+AGG | 0.529558 | 4.1:+48949791 | MS.gene87625:CDS |
| TGTTGAGAAGATTATTGACT+GGG | 0.531470 | 4.1:+48947698 | MS.gene87625:CDS |
| GAGGAACAACGAGCATGTTA+CGG | 0.531836 | 4.1:-48948599 | None:intergenic |
| TACATGGTTCTACGTCGGAC+AGG | 0.533933 | 4.1:-48949784 | None:intergenic |
| TCTAGTAGGTATTTAGCAGC+AGG | 0.535650 | 4.1:-48955456 | None:intergenic |
| TCAAACCCAAGTGTTATGCT+TGG | 0.536303 | 4.1:+48950985 | MS.gene87625:CDS |
| TCCTTGTTAATACTTCCAGC+TGG | 0.537299 | 4.1:-48955429 | None:intergenic |
| GGGATTTGCTATACCAAAAG+AGG | 0.538491 | 4.1:+48950864 | MS.gene87625:intron |
| AAATCTGCAGAATGGTGTTA+CGG | 0.539268 | 4.1:+48949150 | MS.gene87625:CDS |
| TCTGTTTGTTGACTATAATG+AGG | 0.539417 | 4.1:+48949620 | MS.gene87625:CDS |
| CCCCAGGTTTGTAGCAAAGA+GGG | 0.541656 | 4.1:-48956419 | None:intergenic |
| GAAGCTGAGGCAGCAATGCT+CGG | 0.545462 | 4.1:+48948880 | MS.gene87625:CDS |
| ACATATGAGTCTATCACAAA+GGG | 0.548128 | 4.1:+48955219 | MS.gene87625:CDS |
| TCAATTCTTATGGAAGTCGT+CGG | 0.548175 | 4.1:+48955502 | MS.gene87625:CDS |
| TGGGGAGGATGCAGACACAT+TGG | 0.548419 | 4.1:+48956437 | MS.gene87625:CDS |
| TCACAAAGGGTAACCCTATG+TGG | 0.548614 | 4.1:+48955232 | MS.gene87625:CDS |
| CCATTCAGTTCAAGTTGACG+TGG | 0.549622 | 4.1:+48948482 | MS.gene87625:CDS |
| CAAGAGTAGAGAGTATCAGC+TGG | 0.551741 | 4.1:-48955270 | None:intergenic |
| CAACCAGCAGAGCTCAAGCA+TGG | 0.552119 | 4.1:+48950922 | MS.gene87625:CDS |
| CTAAATACCTACTAGAGCGT+GGG | 0.552519 | 4.1:+48955463 | MS.gene87625:CDS |
| TTCATGAATATATGTTGAGT+TGG | 0.553927 | 4.1:-48955298 | None:intergenic |
| AATTCATCGCAGTAACTTGG+TGG | 0.555174 | 4.1:+48956383 | MS.gene87625:CDS |
| CCAGCCCCAAGCATAACACT+TGG | 0.556722 | 4.1:-48950991 | None:intergenic |
| AGTTGAGATTCCTTTCAAGC+CGG | 0.556820 | 4.1:+48947740 | MS.gene87625:CDS |
| GCTGGAGCTGAGTATGGCAG+TGG | 0.557103 | 4.1:+48956162 | MS.gene87625:CDS |
| TACTGGAGTCCCAGCTGTCG+TGG | 0.560573 | 4.1:+48947888 | MS.gene87625:CDS |
| CAATCTTGAATATCTTGGAC+GGG | 0.562003 | 4.1:+48948747 | MS.gene87625:CDS |
| GTTAAAACAAGTCTTGCTCC+AGG | 0.564245 | 4.1:+48951206 | MS.gene87625:CDS |
| AGAGCGTGGGGTTGAACGCA+AGG | 0.564248 | 4.1:+48955476 | MS.gene87625:CDS |
| TGAGAAGGAGCCAATTGGAA+CGG | 0.564434 | 4.1:+48954993 | MS.gene87625:CDS |
| AATGATGAGGTGATGGCGAG+GGG | 0.566434 | 4.1:+48955528 | MS.gene87625:CDS |
| ATGAGATCCAGGAGGATCCA+TGG | 0.567055 | 4.1:-48955343 | None:intergenic |
| AAGGAACTCACCAATAACAT+TGG | 0.567124 | 4.1:-48956213 | None:intergenic |
| AATTTACCTGCAAGAGAACA+CGG | 0.574310 | 4.1:-48947764 | None:intergenic |
| TCGGGGAAATGATGAGGTGA+TGG | 0.575160 | 4.1:+48955521 | MS.gene87625:CDS |
| GAAATGATGAGGTGATGGCG+AGG | 0.575429 | 4.1:+48955526 | MS.gene87625:CDS |
| GGAGCCAATTGGAACGGGGA+AGG | 0.577897 | 4.1:+48954999 | MS.gene87625:CDS |
| ACTTGCAGTTTGTTCCACAT+AGG | 0.578259 | 4.1:-48955246 | None:intergenic |
| GCTAAATACCTACTAGAGCG+TGG | 0.578813 | 4.1:+48955462 | MS.gene87625:CDS |
| GGTTGACATTGACTTTGAGA+AGG | 0.579703 | 4.1:+48954978 | MS.gene87625:intron |
| GTATGGCAGTGGAAGTTCTA+GGG | 0.582014 | 4.1:+48956173 | MS.gene87625:CDS |
| TGATAGACTCATATGTACTT+CGG | 0.582019 | 4.1:-48955212 | None:intergenic |
| CACCATGGGCTTCTTCCCTG+TGG | 0.582342 | 4.1:+48949429 | MS.gene87625:CDS |
| TCAATCTTGAATATCTTGGA+CGG | 0.584359 | 4.1:+48948746 | MS.gene87625:CDS |
| AACATGACCATGGATCCTCC+TGG | 0.586071 | 4.1:+48955336 | MS.gene87625:CDS |
| ATTCTTGGATCATTCAGAGA+AGG | 0.587366 | 4.1:-48946821 | None:intergenic |
| AGCAACAACCAGAGGAGGTG+AGG | 0.588521 | 4.1:-48953603 | None:intergenic |
| ATTATCGCAGTTGCGAATGG+CGG | 0.591541 | 4.1:-48947655 | None:intergenic |
| ACCTGCAAGAGAACACGGGC+CGG | 0.592509 | 4.1:-48947759 | None:intergenic |
| TTAACATGTCTTCCTAAGCC+AGG | 0.593533 | 4.1:+48946767 | MS.gene87625:CDS |
| TGTCTTCCTAAGCCAGGTGG+TGG | 0.595106 | 4.1:+48946773 | MS.gene87625:CDS |
| TTCAAAGGCACACGGTCGTG+GGG | 0.597454 | 4.1:-48949935 | None:intergenic |
| GTCATGTTCTTGAAGTATGG+AGG | 0.597918 | 4.1:-48955321 | None:intergenic |
| AAGATAGTTAGCTCTTGTCA+AGG | 0.602141 | 4.1:-48953579 | None:intergenic |
| CAAAAGTATCTAAATGAACA+AGG | 0.602869 | 4.1:+48951390 | MS.gene87625:CDS |
| ACAACTATGATAGATGGGCT+TGG | 0.605199 | 4.1:+48948829 | MS.gene87625:CDS |
| TCTAGGGATTGGGCTGCCAA+GGG | 0.607673 | 4.1:+48956189 | MS.gene87625:CDS |
| AAGCCAAGTCCACGACAGCT+GGG | 0.608463 | 4.1:-48947897 | None:intergenic |
| GCGAGTGAGAATCCTTTCAA+GGG | 0.612759 | 4.1:+48946740 | MS.gene87625:intron |
| TGTGCCTTTGAAAGAAATGA+AGG | 0.613775 | 4.1:+48949946 | MS.gene87625:CDS |
| CCCTCTTTGCTACAAACCTG+GGG | 0.615039 | 4.1:+48956419 | MS.gene87625:CDS |
| AAACCCAAGTGTTATGCTTG+GGG | 0.616138 | 4.1:+48950987 | MS.gene87625:CDS |
| TACATATGAGTCTATCACAA+AGG | 0.616248 | 4.1:+48955218 | MS.gene87625:CDS |
| GAATAAGCCCTATCTTGTTG+CGG | 0.619064 | 4.1:-48949743 | None:intergenic |
| AGAGCATAAGCAACAACCAG+AGG | 0.620802 | 4.1:-48953611 | None:intergenic |
| CTATCTGGAAATCTGCAGAA+TGG | 0.624123 | 4.1:+48949142 | MS.gene87625:CDS |
| AGATAGTTAGCTCTTGTCAA+GGG | 0.626760 | 4.1:-48953578 | None:intergenic |
| TTATGTGTTCGATGCAGCAA+TGG | 0.628278 | 4.1:+48955638 | MS.gene87625:CDS |
| TCATTTCTTTCAAAGGCACA+CGG | 0.629426 | 4.1:-48949943 | None:intergenic |
| TCCCCAGGTTTGTAGCAAAG+AGG | 0.630250 | 4.1:-48956420 | None:intergenic |
| ATTCATCGCAGTAACTTGGT+GGG | 0.630334 | 4.1:+48956384 | MS.gene87625:CDS |
| GCATAAGCAACAACCAGAGG+AGG | 0.630519 | 4.1:-48953608 | None:intergenic |
| ACTTGAATTCCAGAGAAACA+AGG | 0.633891 | 4.1:+48948539 | MS.gene87625:CDS |
| CATATGGAAGAATTCCTCCA+TGG | 0.634790 | 4.1:-48956744 | None:intergenic |
| TCCAGCTGGAGAAATATGAT+CGG | 0.639805 | 4.1:-48955415 | None:intergenic |
| ACACAGATTCTTAGAAAGCA+CGG | 0.640595 | 4.1:+48949196 | MS.gene87625:CDS |
| TGGCAAGAATGTCTACCTCA+GGG | 0.641425 | 4.1:+48955023 | MS.gene87625:CDS |
| TCTTTGCTACAAACCTGGGG+AGG | 0.642538 | 4.1:+48956422 | MS.gene87625:CDS |
| TGTTGGAGGTATCGAAGCTG+AGG | 0.643188 | 4.1:+48948867 | MS.gene87625:CDS |
| GATGATAGAGTCTTATCTCA+GGG | 0.643636 | 4.1:+48949590 | MS.gene87625:CDS |
| CATGTATCTCAGGACCAAAG+AGG | 0.644393 | 4.1:+48949801 | MS.gene87625:CDS |
| AGCTGGAGAAATATGATCGG+TGG | 0.644456 | 4.1:-48955412 | None:intergenic |
| ATCCACAGGGAAGAAGCCCA+TGG | 0.649532 | 4.1:-48949431 | None:intergenic |
| TCCAGCTGGAAGTATTAACA+AGG | 0.649598 | 4.1:+48955428 | MS.gene87625:CDS |
| CAGCCCCAAGCATAACACTT+GGG | 0.651191 | 4.1:-48950990 | None:intergenic |
| CTCAGCTCCAGCCAGCACAA+TGG | 0.654348 | 4.1:-48956151 | None:intergenic |
| ATCTACTGAAGAAATTGCAG+AGG | 0.657410 | 4.1:+48955056 | MS.gene87625:CDS |
| AAGTCGTCGGGGAAATGATG+AGG | 0.657790 | 4.1:+48955515 | MS.gene87625:CDS |
| TGATGTACTATACCAGAACC+AGG | 0.661607 | 4.1:-48948621 | None:intergenic |
| AACATGTATTGGCAATTCAG+GGG | 0.662698 | 4.1:+48951440 | MS.gene87625:CDS |
| ATACTTCAAGAACATGACCA+TGG | 0.667430 | 4.1:+48955326 | MS.gene87625:CDS |
| AGAAGGAGCCAATTGGAACG+GGG | 0.669879 | 4.1:+48954995 | MS.gene87625:CDS |
| ATTTACCTGCAAGAGAACAC+GGG | 0.670610 | 4.1:-48947763 | None:intergenic |
| CTCTTGTCAAGGGATGAACC+CGG | 0.673673 | 4.1:-48953568 | None:intergenic |
| AATTCTTATGGAAGTCGTCG+GGG | 0.678191 | 4.1:+48955504 | MS.gene87625:CDS |
| TTACTAAATATCTACTCCAG+AGG | 0.681676 | 4.1:+48951240 | MS.gene87625:CDS |
| CTTACTCTATCCTGACAGTG+TGG | 0.682246 | 4.1:+48948789 | MS.gene87625:CDS |
| CATAGCACGCTTTGACACCG+AGG | 0.696443 | 4.1:+48956569 | MS.gene87625:CDS |
| TGTTAACAAGCTCTTAAACG+GGG | 0.704394 | 4.1:+48955572 | MS.gene87625:CDS |
| TAAATACCTACTAGAGCGTG+GGG | 0.714753 | 4.1:+48955464 | MS.gene87625:CDS |
| CTTGCATACTTCAACCATGG+AGG | 0.716794 | 4.1:+48956730 | MS.gene87625:CDS |
| CACAGGGAAGAAGCCCATGG+TGG | 0.716978 | 4.1:-48949428 | None:intergenic |
| ACATGTCTTCCTAAGCCAGG+TGG | 0.720220 | 4.1:+48946770 | MS.gene87625:CDS |
| TGAGATACATGGTTCTACGT+CGG | 0.727878 | 4.1:-48949789 | None:intergenic |
| GTAATGTAACGTGATCCACA+GGG | 0.728319 | 4.1:-48949444 | None:intergenic |
| TTCACACCATGAGATCCAGG+AGG | 0.769679 | 4.1:-48955351 | None:intergenic |
| TGTACTATACCAGAACCAGG+AGG | 0.789089 | 4.1:-48948618 | None:intergenic |
| TAGATGGCCAGATATCCCTG+AGG | 0.811800 | 4.1:-48955038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 48946582 | 48956792 | 48946582 | ID=MS.gene87625 |
| chr4.1 | mRNA | 48946582 | 48956792 | 48946582 | ID=MS.gene87625.t1;Parent=MS.gene87625 |
| chr4.1 | exon | 48946582 | 48946585 | 48946582 | ID=MS.gene87625.t1.exon1;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48946582 | 48946585 | 48946582 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48946741 | 48946845 | 48946741 | ID=MS.gene87625.t1.exon2;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48946741 | 48946845 | 48946741 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48947619 | 48947779 | 48947619 | ID=MS.gene87625.t1.exon3;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48947619 | 48947779 | 48947619 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48947883 | 48947975 | 48947883 | ID=MS.gene87625.t1.exon4;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48947883 | 48947975 | 48947883 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48948459 | 48948644 | 48948459 | ID=MS.gene87625.t1.exon5;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48948459 | 48948644 | 48948459 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48948745 | 48948906 | 48948745 | ID=MS.gene87625.t1.exon6;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48948745 | 48948906 | 48948745 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48949103 | 48949247 | 48949103 | ID=MS.gene87625.t1.exon7;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48949103 | 48949247 | 48949103 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48949359 | 48949501 | 48949359 | ID=MS.gene87625.t1.exon8;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48949359 | 48949501 | 48949359 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48949585 | 48949641 | 48949585 | ID=MS.gene87625.t1.exon9;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48949585 | 48949641 | 48949585 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48949743 | 48949822 | 48949743 | ID=MS.gene87625.t1.exon10;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48949743 | 48949822 | 48949743 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48949934 | 48950009 | 48949934 | ID=MS.gene87625.t1.exon11;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48949934 | 48950009 | 48949934 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48950865 | 48951050 | 48950865 | ID=MS.gene87625.t1.exon12;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48950865 | 48951050 | 48950865 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48951194 | 48951261 | 48951194 | ID=MS.gene87625.t1.exon13;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48951194 | 48951261 | 48951194 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48951383 | 48951501 | 48951383 | ID=MS.gene87625.t1.exon14;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48951383 | 48951501 | 48951383 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48953522 | 48953643 | 48953522 | ID=MS.gene87625.t1.exon15;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48953522 | 48953643 | 48953522 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48954979 | 48955077 | 48954979 | ID=MS.gene87625.t1.exon16;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48954979 | 48955077 | 48954979 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48955180 | 48955659 | 48955180 | ID=MS.gene87625.t1.exon17;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48955180 | 48955659 | 48955180 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48956126 | 48956224 | 48956126 | ID=MS.gene87625.t1.exon18;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48956126 | 48956224 | 48956126 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48956348 | 48956590 | 48956348 | ID=MS.gene87625.t1.exon19;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48956348 | 48956590 | 48956348 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| chr4.1 | exon | 48956724 | 48956792 | 48956724 | ID=MS.gene87625.t1.exon20;Parent=MS.gene87625.t1 |
| chr4.1 | CDS | 48956724 | 48956792 | 48956724 | ID=cds.MS.gene87625.t1;Parent=MS.gene87625.t1 |
| Gene Sequence |
| Protein sequence |
