Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87828.t1 | XP_003627656.2 | 99.1 | 212 | 2 | 0 | 1 | 212 | 2 | 213 | 1.80E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87828.t1 | Q9SWE5 | 79.6 | 196 | 39 | 1 | 12 | 207 | 9 | 203 | 4.2e-94 | 345.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87828.t1 | G7LCR5 | 99.1 | 212 | 2 | 0 | 1 | 212 | 2 | 213 | 1.3e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87828 | MS.gene019391 | PPI |
| MS.gene23647 | MS.gene87828 | PPI |
| MS.gene019391 | MS.gene87828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87828.t1 | MTR_8g035610 | 99.057 | 212 | 2 | 0 | 1 | 212 | 2 | 213 | 6.88e-159 | 437 |
| MS.gene87828.t1 | MTR_8g035610 | 98.995 | 199 | 2 | 0 | 14 | 212 | 1 | 199 | 1.24e-148 | 411 |
| MS.gene87828.t1 | MTR_7g075760 | 57.653 | 196 | 80 | 2 | 8 | 202 | 5 | 198 | 1.03e-80 | 240 |
| MS.gene87828.t1 | MTR_7g076050 | 57.653 | 196 | 80 | 2 | 8 | 202 | 5 | 198 | 1.03e-80 | 240 |
| MS.gene87828.t1 | MTR_7g076070 | 56.731 | 208 | 77 | 3 | 1 | 204 | 2 | 200 | 3.23e-77 | 231 |
| MS.gene87828.t1 | MTR_7g075710 | 57.971 | 207 | 74 | 4 | 1 | 203 | 1 | 198 | 1.09e-76 | 229 |
| MS.gene87828.t1 | MTR_7g075750 | 57.812 | 192 | 76 | 2 | 14 | 204 | 1 | 188 | 4.90e-73 | 219 |
| MS.gene87828.t1 | MTR_7g076045 | 59.231 | 130 | 47 | 2 | 75 | 204 | 5 | 128 | 8.86e-47 | 151 |
| MS.gene87828.t1 | MTR_7g074480 | 60.784 | 51 | 15 | 2 | 109 | 159 | 3 | 48 | 3.31e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87828.t1 | AT3G18030 | 79.592 | 196 | 39 | 1 | 12 | 207 | 9 | 203 | 1.71e-123 | 348 |
| MS.gene87828.t1 | AT1G48605 | 76.923 | 195 | 44 | 1 | 13 | 207 | 2 | 195 | 4.64e-118 | 334 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTGAACTCACAGGTTC+TGG | 0.249432 | 8.4:-61901244 | None:intergenic |
| AGGTTAGCTTGTGGGGATTA+TGG | 0.262541 | 8.4:+61902980 | MS.gene87828:CDS |
| GAGCCTTACAGTAGAGTAAA+TGG | 0.285370 | 8.4:-61903029 | None:intergenic |
| GAGTAAAATCCGAGGCTTCC+TGG | 0.300240 | 8.4:-61901296 | None:intergenic |
| GTTCCACATAAAAGTGTTCA+TGG | 0.333551 | 8.4:-61902885 | None:intergenic |
| TTTGTCATTGTTTCACTGAA+TGG | 0.370610 | 8.4:+61901359 | MS.gene87828:CDS |
| TGTTTGCTGTTGTAGATTGC+TGG | 0.375544 | 8.4:+61902788 | MS.gene87828:intron |
| TCACATGTATCGTGCGAGCC+TGG | 0.385273 | 8.4:+61902831 | MS.gene87828:CDS |
| CAAGCTAACCTCTTTGTAAC+AGG | 0.386122 | 8.4:-61902968 | None:intergenic |
| AGTAAAATCCGAGGCTTCCT+GGG | 0.419242 | 8.4:-61901295 | None:intergenic |
| TTGTCATTGTTTCACTGAAT+GGG | 0.424119 | 8.4:+61901360 | MS.gene87828:CDS |
| TTCACATTGAGCTTCGCAAA+TGG | 0.429618 | 8.4:+61901512 | MS.gene87828:CDS |
| CGTATACAAAATCACATCCT+TGG | 0.455438 | 8.4:-61901443 | None:intergenic |
| TGTATACGGACGACGATGAA+TGG | 0.456117 | 8.4:+61901458 | MS.gene87828:CDS |
| CAACTGAACTCACAGGTTCT+GGG | 0.458227 | 8.4:-61901243 | None:intergenic |
| CCATTGTCGGCAAACACTCT+TGG | 0.468148 | 8.4:+61901556 | MS.gene87828:CDS |
| TTACAAAGAGGTTAGCTTGT+GGG | 0.472912 | 8.4:+61902972 | MS.gene87828:CDS |
| CTACCATTTACTCTACTGTA+AGG | 0.476278 | 8.4:+61903026 | MS.gene87828:CDS |
| TCACATTGAGCTTCGCAAAT+GGG | 0.477326 | 8.4:+61901513 | MS.gene87828:CDS |
| CACATGTATCGTGCGAGCCT+GGG | 0.485764 | 8.4:+61902832 | MS.gene87828:CDS |
| CTCATCTCCATTGACGAGCT+TGG | 0.486057 | 8.4:+61902929 | MS.gene87828:CDS |
| ACAGTAGAGTAAATGGTAGA+AGG | 0.491124 | 8.4:-61903022 | None:intergenic |
| ATGGCTGGTGCAACAAAGAA+TGG | 0.494922 | 8.4:-61902866 | None:intergenic |
| AGAAATACCAAGCTCGTCAA+TGG | 0.495582 | 8.4:-61902936 | None:intergenic |
| TCGCAAATGGGCTGATATCA+TGG | 0.497396 | 8.4:+61901525 | MS.gene87828:CDS |
| CCAAGAGTGTTTGCCGACAA+TGG | 0.502597 | 8.4:-61901556 | None:intergenic |
| CATGGTCATTGCTCCATTGT+CGG | 0.504477 | 8.4:+61901543 | MS.gene87828:CDS |
| GTATACAAAATCACATCCTT+GGG | 0.508904 | 8.4:-61901442 | None:intergenic |
| CACATAAAAGTGTTCATGGC+TGG | 0.518632 | 8.4:-61902881 | None:intergenic |
| TACAAAGAGGTTAGCTTGTG+GGG | 0.520289 | 8.4:+61902973 | MS.gene87828:CDS |
| CCAGAACCTGTGAGTTCAGT+TGG | 0.528188 | 8.4:+61901244 | MS.gene87828:CDS |
| ATGAGATGCCGCTCTGTGAA+AGG | 0.531219 | 8.4:-61902911 | None:intergenic |
| GAATGGCTTGCTATAGTCCC+AGG | 0.538623 | 8.4:-61902849 | None:intergenic |
| TGCTGTTGTAGATTGCTGGA+GGG | 0.541864 | 8.4:+61902792 | MS.gene87828:intron |
| ACGACGATGAATGGTCTAGT+TGG | 0.542274 | 8.4:+61901467 | MS.gene87828:CDS |
| GCTTGTGGGGATTATGGCAA+TGG | 0.544428 | 8.4:+61902986 | MS.gene87828:CDS |
| GGATTATGGCAATGGTGCAA+TGG | 0.551856 | 8.4:+61902994 | MS.gene87828:CDS |
| TGAACTCACAGGTTCTGGGC+TGG | 0.571240 | 8.4:-61901239 | None:intergenic |
| TGGTCTAGTTGGAAGAAACT+AGG | 0.573969 | 8.4:+61901478 | MS.gene87828:CDS |
| TCATTCCACCTGTTACAAAG+AGG | 0.579111 | 8.4:+61902960 | MS.gene87828:CDS |
| GCTAACCTCTTTGTAACAGG+TGG | 0.589007 | 8.4:-61902965 | None:intergenic |
| TTCTCTCCAACTGAACTCAC+AGG | 0.597337 | 8.4:-61901250 | None:intergenic |
| GTCGGCAAACACTCTTGGCA+AGG | 0.605734 | 8.4:+61901561 | MS.gene87828:CDS |
| TTGCTGTTGTAGATTGCTGG+AGG | 0.607972 | 8.4:+61902791 | MS.gene87828:intron |
| TGAAAGAACAGCGATTCCCA+AGG | 0.623450 | 8.4:+61901426 | MS.gene87828:CDS |
| TATGAGTCAAAGGCTCAGCA+AGG | 0.625267 | 8.4:+61903055 | MS.gene87828:CDS |
| TACTAGTGGAAGTGTTGCTG+CGG | 0.634094 | 8.4:+61901321 | MS.gene87828:CDS |
| GTTACAAAGAGGTTAGCTTG+TGG | 0.645490 | 8.4:+61902971 | MS.gene87828:CDS |
| GTAAAATCCGAGGCTTCCTG+GGG | 0.650776 | 8.4:-61901294 | None:intergenic |
| CTAGTAGCGAGTAAAATCCG+AGG | 0.704126 | 8.4:-61901304 | None:intergenic |
| GGAACAATCCTTTCACAGAG+CGG | 0.724970 | 8.4:+61902903 | MS.gene87828:CDS |
| TAAAATCCGAGGCTTCCTGG+GGG | 0.763745 | 8.4:-61901293 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTCTATCTACTTATAA+AGG | + | chr8.4:61901616-61901635 | MS.gene87828:intron | 15.0% |
| !! | TTAGAAATTGTAAAAGAAAA+TGG | - | chr8.4:61901721-61901740 | None:intergenic | 15.0% |
| !!! | AATGTTTTTAGAAAGTTAAT+AGG | + | chr8.4:61901924-61901943 | MS.gene87828:intron | 15.0% |
| !! | ATGTTAGGATTATAGAATAA+AGG | - | chr8.4:61902664-61902683 | None:intergenic | 20.0% |
| !! | TGTTAGGATTATAGAATAAA+GGG | - | chr8.4:61902663-61902682 | None:intergenic | 20.0% |
| !! | TGTTAGTTAGATTTCTATTT+GGG | - | chr8.4:61902259-61902278 | None:intergenic | 20.0% |
| !! | TTCAGTTTAAATTACTAACA+AGG | - | chr8.4:61901878-61901897 | None:intergenic | 20.0% |
| !! | TTGTTAGTTAGATTTCTATT+TGG | - | chr8.4:61902260-61902279 | None:intergenic | 20.0% |
| ! | ACCTTCTATTACAAAAGAAA+GGG | + | chr8.4:61902175-61902194 | MS.gene87828:intron | 25.0% |
| ! | ATTACAAAAGAAAGGGATAA+TGG | + | chr8.4:61902182-61902201 | MS.gene87828:intron | 25.0% |
| ! | GCATATATCTTAGTTGTAAT+TGG | - | chr8.4:61902116-61902135 | None:intergenic | 25.0% |
| ! | GTTGAATTGAAAATGAAAAC+AGG | - | chr8.4:61901661-61901680 | None:intergenic | 25.0% |
| ! | TCTATAATCCTAACATATGA+TGG | + | chr8.4:61902668-61902687 | MS.gene87828:intron | 25.0% |
| ! | TTACAAAAGAAAGGGATAAT+GGG | + | chr8.4:61902183-61902202 | MS.gene87828:intron | 25.0% |
| CAATTGTGATAGTAAGAAGA+TGG | - | chr8.4:61901832-61901851 | None:intergenic | 30.0% | |
| GAAAATGAAAACAGGAAACA+TGG | - | chr8.4:61901653-61901672 | None:intergenic | 30.0% | |
| GACCTTCTATTACAAAAGAA+AGG | + | chr8.4:61902174-61902193 | MS.gene87828:intron | 30.0% | |
| GTATACAAAATCACATCCTT+GGG | - | chr8.4:61901445-61901464 | None:intergenic | 30.0% | |
| GTGTATGTACATCTTATGTA+TGG | + | chr8.4:61902697-61902716 | MS.gene87828:intron | 30.0% | |
| TACACAACATGTGAAGAATT+CGG | - | chr8.4:61902524-61902543 | None:intergenic | 30.0% | |
| TCTAGAAACAATACAAACAG+TGG | - | chr8.4:61901785-61901804 | None:intergenic | 30.0% | |
| TTACTATGAGTTAGTTAGCT+AGG | - | chr8.4:61902290-61902309 | None:intergenic | 30.0% | |
| TTGTCATTGTTTCACTGAAT+GGG | + | chr8.4:61901360-61901379 | MS.gene87828:CDS | 30.0% | |
| TTTGTCATTGTTTCACTGAA+TGG | + | chr8.4:61901359-61901378 | MS.gene87828:CDS | 30.0% | |
| ! | AAAATGCAAAGACGATTTTG+TGG | - | chr8.4:61901404-61901423 | None:intergenic | 30.0% |
| ! | ATGCCAAAGATACTTTTCTA+AGG | + | chr8.4:61902132-61902151 | MS.gene87828:intron | 30.0% |
| ! | CAAGGATGTGATTTTGTATA+CGG | + | chr8.4:61901444-61901463 | MS.gene87828:CDS | 30.0% |
| ! | TCCCTTTCTTTTGTAATAGA+AGG | - | chr8.4:61902179-61902198 | None:intergenic | 30.0% |
| ! | TGCCAAAGATACTTTTCTAA+GGG | + | chr8.4:61902133-61902152 | MS.gene87828:intron | 30.0% |
| !! | TTCCCTTAGAAAAGTATCTT+TGG | - | chr8.4:61902138-61902157 | None:intergenic | 30.0% |
| !! | TTTTGTTGTATTTCCGTTAC+AGG | - | chr8.4:61902229-61902248 | None:intergenic | 30.0% |
| AAAGAAAGGATAACGCTGAT+TGG | + | chr8.4:61902441-61902460 | MS.gene87828:intron | 35.0% | |
| AATCAGCGTTATCCTTTCTT+TGG | - | chr8.4:61902442-61902461 | None:intergenic | 35.0% | |
| ACAACTGACCATCATATGTT+AGG | - | chr8.4:61902679-61902698 | None:intergenic | 35.0% | |
| ACAGTAGAGTAAATGGTAGA+AGG | - | chr8.4:61903025-61903044 | None:intergenic | 35.0% | |
| ACATAATTCGCAATTCGCAT+TGG | - | chr8.4:61902567-61902586 | None:intergenic | 35.0% | |
| AGTAACATAATTCGTGCACT+AGG | + | chr8.4:61902305-61902324 | MS.gene87828:intron | 35.0% | |
| ATAGTAAGAAGATGGAAGAC+TGG | - | chr8.4:61901824-61901843 | None:intergenic | 35.0% | |
| CGTATACAAAATCACATCCT+TGG | - | chr8.4:61901446-61901465 | None:intergenic | 35.0% | |
| CTACCATTTACTCTACTGTA+AGG | + | chr8.4:61903026-61903045 | MS.gene87828:CDS | 35.0% | |
| GCGTTGCTAACATCATATAA+CGG | - | chr8.4:61902009-61902028 | None:intergenic | 35.0% | |
| ! | AAGGCTCTTTTATGAGTCAA+AGG | + | chr8.4:61903045-61903064 | MS.gene87828:CDS | 35.0% |
| ! | ACGCTGATTGGTGAAAAAAA+CGG | + | chr8.4:61902453-61902472 | MS.gene87828:intron | 35.0% |
| !! | AAAGAAAGGGATAATGGGTA+AGG | + | chr8.4:61902188-61902207 | MS.gene87828:intron | 35.0% |
| !! | GATACTTTTCTAAGGGAAGA+AGG | + | chr8.4:61902140-61902159 | MS.gene87828:intron | 35.0% |
| !! | GCTAACATCATATAACGGAT+AGG | - | chr8.4:61902004-61902023 | None:intergenic | 35.0% |
| !! | GTTCCACATAAAAGTGTTCA+TGG | - | chr8.4:61902888-61902907 | None:intergenic | 35.0% |
| !! | TTACAAAGAGGTTAGCTTGT+GGG | + | chr8.4:61902972-61902991 | MS.gene87828:CDS | 35.0% |
| ACAGGAAACATGGAAGCAAA+CGG | - | chr8.4:61901643-61901662 | None:intergenic | 40.0% | |
| ACATCGTCACACAAACTTGT+CGG | - | chr8.4:61901978-61901997 | None:intergenic | 40.0% | |
| AGAAATACCAAGCTCGTCAA+TGG | - | chr8.4:61902939-61902958 | None:intergenic | 40.0% | |
| CAAGCTAACCTCTTTGTAAC+AGG | - | chr8.4:61902971-61902990 | None:intergenic | 40.0% | |
| CCTTAGCAACTAACCTGTAA+CGG | + | chr8.4:61902213-61902232 | MS.gene87828:intron | 40.0% | |
| CTTGTCGGAACTAAAGCAAT+TGG | - | chr8.4:61901963-61901982 | None:intergenic | 40.0% | |
| GAGCCTTACAGTAGAGTAAA+TGG | - | chr8.4:61903032-61903051 | None:intergenic | 40.0% | |
| GAGTTAGTTAGCTAGGTTCA+AGG | - | chr8.4:61902283-61902302 | None:intergenic | 40.0% | |
| TATGTAGCAGTACCCGAATT+CGG | - | chr8.4:61902367-61902386 | None:intergenic | 40.0% | |
| TCACATTGAGCTTCGCAAAT+GGG | + | chr8.4:61901513-61901532 | MS.gene87828:CDS | 40.0% | |
| TCATTCCACCTGTTACAAAG+AGG | + | chr8.4:61902960-61902979 | MS.gene87828:CDS | 40.0% | |
| TGGTCTAGTTGGAAGAAACT+AGG | + | chr8.4:61901478-61901497 | MS.gene87828:CDS | 40.0% | |
| TTCACATTGAGCTTCGCAAA+TGG | + | chr8.4:61901512-61901531 | MS.gene87828:CDS | 40.0% | |
| TTGAGATGCATCAATTCACG+TGG | + | chr8.4:61902387-61902406 | MS.gene87828:intron | 40.0% | |
| ! | CAGCCATGAACACTTTTATG+TGG | + | chr8.4:61902882-61902901 | MS.gene87828:CDS | 40.0% |
| !! | CACATAAAAGTGTTCATGGC+TGG | - | chr8.4:61902884-61902903 | None:intergenic | 40.0% |
| !! | GTTACAAAGAGGTTAGCTTG+TGG | + | chr8.4:61902971-61902990 | MS.gene87828:CDS | 40.0% |
| !! | TACAAAGAGGTTAGCTTGTG+GGG | + | chr8.4:61902973-61902992 | MS.gene87828:CDS | 40.0% |
| !! | TGTTTGCTGTTGTAGATTGC+TGG | + | chr8.4:61902788-61902807 | MS.gene87828:intron | 40.0% |
| ACGACGATGAATGGTCTAGT+TGG | + | chr8.4:61901467-61901486 | MS.gene87828:CDS | 45.0% | |
| AGTAAAATCCGAGGCTTCCT+GGG | - | chr8.4:61901298-61901317 | None:intergenic | 45.0% | |
| ATACCAGGCGTACCAAAGAA+AGG | + | chr8.4:61902427-61902446 | MS.gene87828:intron | 45.0% | |
| ATGGCTGGTGCAACAAAGAA+TGG | - | chr8.4:61902869-61902888 | None:intergenic | 45.0% | |
| CAACTGAACTCACAGGTTCT+GGG | - | chr8.4:61901246-61901265 | None:intergenic | 45.0% | |
| CAGGAAACATGGAAGCAAAC+GGG | - | chr8.4:61901642-61901661 | None:intergenic | 45.0% | |
| CATGGTCATTGCTCCATTGT+CGG | + | chr8.4:61901543-61901562 | MS.gene87828:CDS | 45.0% | |
| CTAGTAGCGAGTAAAATCCG+AGG | - | chr8.4:61901307-61901326 | None:intergenic | 45.0% | |
| GATGTTAGCAACGCAAGAGT+TGG | + | chr8.4:61902015-61902034 | MS.gene87828:intron | 45.0% | |
| GCTAACCTCTTTGTAACAGG+TGG | - | chr8.4:61902968-61902987 | None:intergenic | 45.0% | |
| GGAACAATCCTTTCACAGAG+CGG | + | chr8.4:61902903-61902922 | MS.gene87828:CDS | 45.0% | |
| GGATTATGGCAATGGTGCAA+TGG | + | chr8.4:61902994-61903013 | MS.gene87828:CDS | 45.0% | |
| TATCCTTTCTTTGGTACGCC+TGG | - | chr8.4:61902433-61902452 | None:intergenic | 45.0% | |
| TATGAGTCAAAGGCTCAGCA+AGG | + | chr8.4:61903055-61903074 | MS.gene87828:CDS | 45.0% | |
| TGAAAGAACAGCGATTCCCA+AGG | + | chr8.4:61901426-61901445 | MS.gene87828:CDS | 45.0% | |
| TGCTGTTGTAGATTGCTGGA+GGG | + | chr8.4:61902792-61902811 | MS.gene87828:intron | 45.0% | |
| TGTATACGGACGACGATGAA+TGG | + | chr8.4:61901458-61901477 | MS.gene87828:CDS | 45.0% | |
| TTCTCTCCAACTGAACTCAC+AGG | - | chr8.4:61901253-61901272 | None:intergenic | 45.0% | |
| TTTCTTTGGTACGCCTGGTA+TGG | - | chr8.4:61902428-61902447 | None:intergenic | 45.0% | |
| TTTGCACAAACTGCCATACC+AGG | + | chr8.4:61902412-61902431 | MS.gene87828:intron | 45.0% | |
| ! | AAGAAGATGGAAGACTGGCT+AGG | - | chr8.4:61901819-61901838 | None:intergenic | 45.0% |
| ! | CCGTTACAGGTTAGTTGCTA+AGG | - | chr8.4:61902216-61902235 | None:intergenic | 45.0% |
| ! | CGGATTTTACTCGCTACTAG+TGG | + | chr8.4:61901307-61901326 | MS.gene87828:CDS | 45.0% |
| ! | TCGCAATTCGCATTGGTACA+CGG | - | chr8.4:61902560-61902579 | None:intergenic | 45.0% |
| ! | TTGCTGTTGTAGATTGCTGG+AGG | + | chr8.4:61902791-61902810 | MS.gene87828:intron | 45.0% |
| !! | AATTCGCGAGTACCGAATTC+GGG | + | chr8.4:61902352-61902371 | MS.gene87828:intron | 45.0% |
| !! | AGGTTAGCTTGTGGGGATTA+TGG | + | chr8.4:61902980-61902999 | MS.gene87828:CDS | 45.0% |
| !! | CAATTCGCGAGTACCGAATT+CGG | + | chr8.4:61902351-61902370 | MS.gene87828:intron | 45.0% |
| !! | TACTAGTGGAAGTGTTGCTG+CGG | + | chr8.4:61901321-61901340 | MS.gene87828:CDS | 45.0% |
| !! | TCGCAAATGGGCTGATATCA+TGG | + | chr8.4:61901525-61901544 | MS.gene87828:CDS | 45.0% |
| ATGAGATGCCGCTCTGTGAA+AGG | - | chr8.4:61902914-61902933 | None:intergenic | 50.0% | |
| CCAACTGAACTCACAGGTTC+TGG | - | chr8.4:61901247-61901266 | None:intergenic | 50.0% | |
| CCAGAACCTGTGAGTTCAGT+TGG | + | chr8.4:61901244-61901263 | MS.gene87828:CDS | 50.0% | |
| CCATTGTCGGCAAACACTCT+TGG | + | chr8.4:61901556-61901575 | MS.gene87828:CDS | 50.0% | |
| CGAATTCGGTACTCGCGAAT+TGG | - | chr8.4:61902353-61902372 | None:intergenic | 50.0% | |
| CTCATCTCCATTGACGAGCT+TGG | + | chr8.4:61902929-61902948 | MS.gene87828:CDS | 50.0% | |
| GAGTAAAATCCGAGGCTTCC+TGG | - | chr8.4:61901299-61901318 | None:intergenic | 50.0% | |
| GCTTGTGGGGATTATGGCAA+TGG | + | chr8.4:61902986-61903005 | MS.gene87828:CDS | 50.0% | |
| GTAAAATCCGAGGCTTCCTG+GGG | - | chr8.4:61901297-61901316 | None:intergenic | 50.0% | |
| TAAAATCCGAGGCTTCCTGG+GGG | - | chr8.4:61901296-61901315 | None:intergenic | 50.0% | |
| ! | CGAATTGGTTCACGCCTTCA+CGG | - | chr8.4:61902338-61902357 | None:intergenic | 50.0% |
| ! | TTCGCATTGGTACACGGTAC+AGG | - | chr8.4:61902554-61902573 | None:intergenic | 50.0% |
| !! | CCAAGAGTGTTTGCCGACAA+TGG | - | chr8.4:61901559-61901578 | None:intergenic | 50.0% |
| !! | GAATGGCTTGCTATAGTCCC+AGG | - | chr8.4:61902852-61902871 | None:intergenic | 50.0% |
| CACATGTATCGTGCGAGCCT+GGG | + | chr8.4:61902832-61902851 | MS.gene87828:CDS | 55.0% | |
| CACTAGGCAGAGAACCGTGA+AGG | + | chr8.4:61902321-61902340 | MS.gene87828:intron | 55.0% | |
| GAGAGCAAGCTCTTCTGCAC+TGG | + | chr8.4:61902082-61902101 | MS.gene87828:intron | 55.0% | |
| GTCGGCAAACACTCTTGGCA+AGG | + | chr8.4:61901561-61901580 | MS.gene87828:CDS | 55.0% | |
| TCACATGTATCGTGCGAGCC+TGG | + | chr8.4:61902831-61902850 | MS.gene87828:CDS | 55.0% | |
| TGGTACACGGTACAGGTTCG+CGG | - | chr8.4:61902547-61902566 | None:intergenic | 55.0% | |
| !! | TGAACTCACAGGTTCTGGGC+TGG | - | chr8.4:61901242-61901261 | None:intergenic | 55.0% |
| CAGTGAATGCTGCTGCCCCC+AGG | + | chr8.4:61901278-61901297 | MS.gene87828:CDS | 65.0% | |
| CTGCTGCCCCCAGGAAGCCT+CGG | + | chr8.4:61901287-61901306 | MS.gene87828:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 61901235 | 61903093 | 61901235 | ID=MS.gene87828 |
| chr8.4 | mRNA | 61901235 | 61903093 | 61901235 | ID=MS.gene87828.t1;Parent=MS.gene87828 |
| chr8.4 | exon | 61901235 | 61901582 | 61901235 | ID=MS.gene87828.t1.exon1;Parent=MS.gene87828.t1 |
| chr8.4 | CDS | 61901235 | 61901582 | 61901235 | ID=cds.MS.gene87828.t1;Parent=MS.gene87828.t1 |
| chr8.4 | exon | 61902803 | 61903093 | 61902803 | ID=MS.gene87828.t1.exon2;Parent=MS.gene87828.t1 |
| chr8.4 | CDS | 61902803 | 61903093 | 61902803 | ID=cds.MS.gene87828.t1;Parent=MS.gene87828.t1 |
| Gene Sequence |
| Protein sequence |
