Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23647.t1 | XP_003627656.2 | 99.5 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 7.50E-119 | 436.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23647.t1 | Q9SWE5 | 78.9 | 199 | 41 | 1 | 13 | 211 | 9 | 206 | 1.1e-94 | 347.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23647.t1 | G7LCR5 | 99.5 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 5.4e-119 | 436.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050894 | MS.gene23647 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene058818 | MS.gene23647 | 0.815605 | 8.49E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23647 | MS.gene87828 | PPI |
| MS.gene23647 | MS.gene019391 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23647.t1 | MTR_8g035610 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 1.52e-160 | 442 |
| MS.gene23647.t1 | MTR_8g035610 | 99.497 | 199 | 1 | 0 | 15 | 213 | 1 | 199 | 1.41e-149 | 414 |
| MS.gene23647.t1 | MTR_7g075760 | 57.653 | 196 | 80 | 2 | 9 | 203 | 5 | 198 | 1.12e-80 | 239 |
| MS.gene23647.t1 | MTR_7g076050 | 57.653 | 196 | 80 | 2 | 9 | 203 | 5 | 198 | 1.12e-80 | 239 |
| MS.gene23647.t1 | MTR_7g076070 | 56.938 | 209 | 77 | 3 | 1 | 205 | 1 | 200 | 5.47e-78 | 233 |
| MS.gene23647.t1 | MTR_7g075710 | 57.971 | 207 | 74 | 4 | 2 | 204 | 1 | 198 | 1.17e-76 | 229 |
| MS.gene23647.t1 | MTR_7g075750 | 57.812 | 192 | 76 | 2 | 15 | 205 | 1 | 188 | 4.66e-73 | 220 |
| MS.gene23647.t1 | MTR_7g076045 | 59.231 | 130 | 47 | 2 | 76 | 205 | 5 | 128 | 9.26e-47 | 151 |
| MS.gene23647.t1 | MTR_7g074480 | 60.784 | 51 | 15 | 2 | 110 | 160 | 3 | 48 | 3.06e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23647.t1 | AT3G18030 | 78.894 | 199 | 41 | 1 | 13 | 211 | 9 | 206 | 5.63e-124 | 349 |
| MS.gene23647.t1 | AT1G48605 | 76.923 | 195 | 44 | 1 | 14 | 208 | 2 | 195 | 6.15e-118 | 333 |
Find 53 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTGAACTCACAGGTTC+TGG | 0.249432 | 8.1:-67435193 | None:intergenic |
| AGGTTAGCTTGTGGGGATTA+TGG | 0.262541 | 8.1:+67436929 | MS.gene23647:CDS |
| GAGCCTTACAGTAGAGTAAA+TGG | 0.285370 | 8.1:-67436978 | None:intergenic |
| GAGTAAAATCCGAGGCTTCC+TGG | 0.300240 | 8.1:-67435245 | None:intergenic |
| GTTCCACATAAAAGTGTTCA+TGG | 0.333551 | 8.1:-67436834 | None:intergenic |
| TTTGTCATTGTTTCACTGAA+TGG | 0.370610 | 8.1:+67435308 | MS.gene23647:CDS |
| TGTTTGCTGTTGTAGATTGC+TGG | 0.375544 | 8.1:+67436737 | MS.gene23647:intron |
| TCACATGTATCGTGCGAGCC+TGG | 0.385273 | 8.1:+67436780 | MS.gene23647:CDS |
| CAAGCTAACCTCTTTGTAAC+AGG | 0.386122 | 8.1:-67436917 | None:intergenic |
| AGTAAAATCCGAGGCTTCCT+GGG | 0.419242 | 8.1:-67435244 | None:intergenic |
| TTGTCATTGTTTCACTGAAT+GGG | 0.424119 | 8.1:+67435309 | MS.gene23647:CDS |
| TTCACATTGAGCTTCGCAAA+TGG | 0.429618 | 8.1:+67435461 | MS.gene23647:CDS |
| CGTATACAAAATCACATCCT+TGG | 0.455438 | 8.1:-67435392 | None:intergenic |
| TGTATACGGACGACGATGAA+TGG | 0.456117 | 8.1:+67435407 | MS.gene23647:CDS |
| CAACTGAACTCACAGGTTCT+GGG | 0.458227 | 8.1:-67435192 | None:intergenic |
| CCATTGTCGGCAAACACTCT+TGG | 0.468148 | 8.1:+67435505 | MS.gene23647:CDS |
| TTACAAAGAGGTTAGCTTGT+GGG | 0.472912 | 8.1:+67436921 | MS.gene23647:CDS |
| CTACCATTTACTCTACTGTA+AGG | 0.476278 | 8.1:+67436975 | MS.gene23647:CDS |
| TCACATTGAGCTTCGCAAAT+GGG | 0.477326 | 8.1:+67435462 | MS.gene23647:CDS |
| CACATGTATCGTGCGAGCCT+GGG | 0.485764 | 8.1:+67436781 | MS.gene23647:CDS |
| CTCATCTCCATTGACGAGCT+TGG | 0.486057 | 8.1:+67436878 | MS.gene23647:CDS |
| ACAGTAGAGTAAATGGTAGA+AGG | 0.491124 | 8.1:-67436971 | None:intergenic |
| ATGGCTGGTGCAACAAAGAA+TGG | 0.494922 | 8.1:-67436815 | None:intergenic |
| AGAAATACCAAGCTCGTCAA+TGG | 0.495582 | 8.1:-67436885 | None:intergenic |
| TCGCAAATGGGCTGATATCA+TGG | 0.497396 | 8.1:+67435474 | MS.gene23647:CDS |
| CCAAGAGTGTTTGCCGACAA+TGG | 0.502597 | 8.1:-67435505 | None:intergenic |
| CATGGTCATTGCTCCATTGT+CGG | 0.504477 | 8.1:+67435492 | MS.gene23647:CDS |
| GTATACAAAATCACATCCTT+GGG | 0.508904 | 8.1:-67435391 | None:intergenic |
| CACATAAAAGTGTTCATGGC+TGG | 0.518632 | 8.1:-67436830 | None:intergenic |
| TACAAAGAGGTTAGCTTGTG+GGG | 0.520289 | 8.1:+67436922 | MS.gene23647:CDS |
| CCAGAACCTGTGAGTTCAGT+TGG | 0.528188 | 8.1:+67435193 | MS.gene23647:CDS |
| ATGAGATGCCGCTCTGTGAA+AGG | 0.531219 | 8.1:-67436860 | None:intergenic |
| GAATGGCTTGCTATAGTCCC+AGG | 0.538623 | 8.1:-67436798 | None:intergenic |
| TGCTGTTGTAGATTGCTGGA+GGG | 0.541864 | 8.1:+67436741 | MS.gene23647:intron |
| ACGACGATGAATGGTCTAGT+TGG | 0.542274 | 8.1:+67435416 | MS.gene23647:CDS |
| GCTTGTGGGGATTATGGCAA+TGG | 0.544428 | 8.1:+67436935 | MS.gene23647:CDS |
| GGATTATGGCAATGGTGCAA+TGG | 0.551856 | 8.1:+67436943 | MS.gene23647:CDS |
| TGAACTCACAGGTTCTGGGC+TGG | 0.571240 | 8.1:-67435188 | None:intergenic |
| TCAAAGGCTCAGCAAGGTAA+CGG | 0.571549 | 8.1:+67437010 | MS.gene23647:CDS |
| TGGTCTAGTTGGAAGAAACT+AGG | 0.573969 | 8.1:+67435427 | MS.gene23647:CDS |
| TCATTCCACCTGTTACAAAG+AGG | 0.579111 | 8.1:+67436909 | MS.gene23647:CDS |
| GCTAACCTCTTTGTAACAGG+TGG | 0.589007 | 8.1:-67436914 | None:intergenic |
| TTCTCTCCAACTGAACTCAC+AGG | 0.597337 | 8.1:-67435199 | None:intergenic |
| GTCGGCAAACACTCTTGGCA+AGG | 0.605734 | 8.1:+67435510 | MS.gene23647:CDS |
| TTGCTGTTGTAGATTGCTGG+AGG | 0.607972 | 8.1:+67436740 | MS.gene23647:intron |
| TGAAAGAACAGCGATTCCCA+AGG | 0.623450 | 8.1:+67435375 | MS.gene23647:CDS |
| TATGAGTCAAAGGCTCAGCA+AGG | 0.625267 | 8.1:+67437004 | MS.gene23647:CDS |
| TACTAGTGGAAGTGTTGCTG+CGG | 0.634094 | 8.1:+67435270 | MS.gene23647:CDS |
| GTTACAAAGAGGTTAGCTTG+TGG | 0.645490 | 8.1:+67436920 | MS.gene23647:CDS |
| GTAAAATCCGAGGCTTCCTG+GGG | 0.650776 | 8.1:-67435243 | None:intergenic |
| CTAGTAGCGAGTAAAATCCG+AGG | 0.704126 | 8.1:-67435253 | None:intergenic |
| GGAACAATCCTTTCACAGAG+CGG | 0.724970 | 8.1:+67436852 | MS.gene23647:CDS |
| TAAAATCCGAGGCTTCCTGG+GGG | 0.763745 | 8.1:-67435242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTCTATCTACTTATAA+AGG | + | chr8.1:67435565-67435584 | MS.gene23647:intron | 15.0% |
| !! | TTAGAAATTGTAAAAGAAAA+TGG | - | chr8.1:67435670-67435689 | None:intergenic | 15.0% |
| !!! | AATGTTTTTAGAAAGTTAAT+AGG | + | chr8.1:67435873-67435892 | MS.gene23647:intron | 15.0% |
| !! | ATGTTAGGATTATAGAATAA+AGG | - | chr8.1:67436613-67436632 | None:intergenic | 20.0% |
| !! | TGTTAGGATTATAGAATAAA+GGG | - | chr8.1:67436612-67436631 | None:intergenic | 20.0% |
| !! | TGTTAGTTAGATTTCTATTT+GGG | - | chr8.1:67436208-67436227 | None:intergenic | 20.0% |
| !! | TTCAGTTTAAATTACTAACA+AGG | - | chr8.1:67435827-67435846 | None:intergenic | 20.0% |
| !! | TTGTTAGTTAGATTTCTATT+TGG | - | chr8.1:67436209-67436228 | None:intergenic | 20.0% |
| ! | ACCTTCTATTACAAAAGAAA+GGG | + | chr8.1:67436124-67436143 | MS.gene23647:intron | 25.0% |
| ! | ATTACAAAAGAAAGGGATAA+TGG | + | chr8.1:67436131-67436150 | MS.gene23647:intron | 25.0% |
| ! | GCATATATCTTAGTTGTAAT+TGG | - | chr8.1:67436065-67436084 | None:intergenic | 25.0% |
| ! | GTTGAATTGAAAATGAAAAC+AGG | - | chr8.1:67435610-67435629 | None:intergenic | 25.0% |
| ! | TCTATAATCCTAACATATGA+TGG | + | chr8.1:67436617-67436636 | MS.gene23647:intron | 25.0% |
| ! | TTACAAAAGAAAGGGATAAT+GGG | + | chr8.1:67436132-67436151 | MS.gene23647:intron | 25.0% |
| CAATTGTGATAGTAAGAAGA+TGG | - | chr8.1:67435781-67435800 | None:intergenic | 30.0% | |
| GAAAATGAAAACAGGAAACA+TGG | - | chr8.1:67435602-67435621 | None:intergenic | 30.0% | |
| GACCTTCTATTACAAAAGAA+AGG | + | chr8.1:67436123-67436142 | MS.gene23647:intron | 30.0% | |
| GTATACAAAATCACATCCTT+GGG | - | chr8.1:67435394-67435413 | None:intergenic | 30.0% | |
| GTGTATGTACATCTTATGTA+TGG | + | chr8.1:67436646-67436665 | MS.gene23647:intron | 30.0% | |
| TACACAACATGTGAAGAATT+CGG | - | chr8.1:67436473-67436492 | None:intergenic | 30.0% | |
| TCTAGAAACAATACAAACAG+TGG | - | chr8.1:67435734-67435753 | None:intergenic | 30.0% | |
| TTACTATGAGTTAGTTAGCT+AGG | - | chr8.1:67436239-67436258 | None:intergenic | 30.0% | |
| TTGTCATTGTTTCACTGAAT+GGG | + | chr8.1:67435309-67435328 | MS.gene23647:CDS | 30.0% | |
| TTTGTCATTGTTTCACTGAA+TGG | + | chr8.1:67435308-67435327 | MS.gene23647:CDS | 30.0% | |
| ! | AAAATGCAAAGACGATTTTG+TGG | - | chr8.1:67435353-67435372 | None:intergenic | 30.0% |
| ! | ATGCCAAAGATACTTTTCTA+AGG | + | chr8.1:67436081-67436100 | MS.gene23647:intron | 30.0% |
| ! | CAAGGATGTGATTTTGTATA+CGG | + | chr8.1:67435393-67435412 | MS.gene23647:CDS | 30.0% |
| ! | TCCCTTTCTTTTGTAATAGA+AGG | - | chr8.1:67436128-67436147 | None:intergenic | 30.0% |
| ! | TGCCAAAGATACTTTTCTAA+GGG | + | chr8.1:67436082-67436101 | MS.gene23647:intron | 30.0% |
| !! | TTCCCTTAGAAAAGTATCTT+TGG | - | chr8.1:67436087-67436106 | None:intergenic | 30.0% |
| !! | TTTTGTTGTATTTCCGTTAC+AGG | - | chr8.1:67436178-67436197 | None:intergenic | 30.0% |
| AAAGAAAGGATAACGCTGAT+TGG | + | chr8.1:67436390-67436409 | MS.gene23647:intron | 35.0% | |
| AATCAGCGTTATCCTTTCTT+TGG | - | chr8.1:67436391-67436410 | None:intergenic | 35.0% | |
| ACAACTGACCATCATATGTT+AGG | - | chr8.1:67436628-67436647 | None:intergenic | 35.0% | |
| ACAGTAGAGTAAATGGTAGA+AGG | - | chr8.1:67436974-67436993 | None:intergenic | 35.0% | |
| ACATAATTCGCAATTCGCAT+TGG | - | chr8.1:67436516-67436535 | None:intergenic | 35.0% | |
| AGTAACATAATTCGTGCACT+AGG | + | chr8.1:67436254-67436273 | MS.gene23647:intron | 35.0% | |
| ATAGTAAGAAGATGGAAGAC+TGG | - | chr8.1:67435773-67435792 | None:intergenic | 35.0% | |
| CGTATACAAAATCACATCCT+TGG | - | chr8.1:67435395-67435414 | None:intergenic | 35.0% | |
| CTACCATTTACTCTACTGTA+AGG | + | chr8.1:67436975-67436994 | MS.gene23647:CDS | 35.0% | |
| GCGTTGCTAACATCATATAA+CGG | - | chr8.1:67435958-67435977 | None:intergenic | 35.0% | |
| ! | AAGGCTCTTTTATGAGTCAA+AGG | + | chr8.1:67436994-67437013 | MS.gene23647:CDS | 35.0% |
| ! | ACGCTGATTGGTGAAAAAAA+CGG | + | chr8.1:67436402-67436421 | MS.gene23647:intron | 35.0% |
| !! | AAAGAAAGGGATAATGGGTA+AGG | + | chr8.1:67436137-67436156 | MS.gene23647:intron | 35.0% |
| !! | GATACTTTTCTAAGGGAAGA+AGG | + | chr8.1:67436089-67436108 | MS.gene23647:intron | 35.0% |
| !! | GCTAACATCATATAACGGAT+AGG | - | chr8.1:67435953-67435972 | None:intergenic | 35.0% |
| !! | GTTCCACATAAAAGTGTTCA+TGG | - | chr8.1:67436837-67436856 | None:intergenic | 35.0% |
| !! | TTACAAAGAGGTTAGCTTGT+GGG | + | chr8.1:67436921-67436940 | MS.gene23647:CDS | 35.0% |
| ACAGGAAACATGGAAGCAAA+CGG | - | chr8.1:67435592-67435611 | None:intergenic | 40.0% | |
| ACATCGTCACACAAACTTGT+CGG | - | chr8.1:67435927-67435946 | None:intergenic | 40.0% | |
| AGAAATACCAAGCTCGTCAA+TGG | - | chr8.1:67436888-67436907 | None:intergenic | 40.0% | |
| CAAGCTAACCTCTTTGTAAC+AGG | - | chr8.1:67436920-67436939 | None:intergenic | 40.0% | |
| CCTTAGCAACTAACCTGTAA+CGG | + | chr8.1:67436162-67436181 | MS.gene23647:intron | 40.0% | |
| CTTGTCGGAACTAAAGCAAT+TGG | - | chr8.1:67435912-67435931 | None:intergenic | 40.0% | |
| GAGCCTTACAGTAGAGTAAA+TGG | - | chr8.1:67436981-67437000 | None:intergenic | 40.0% | |
| GAGTTAGTTAGCTAGGTTCA+AGG | - | chr8.1:67436232-67436251 | None:intergenic | 40.0% | |
| TATGTAGCAGTACCCGAATT+CGG | - | chr8.1:67436316-67436335 | None:intergenic | 40.0% | |
| TCACATTGAGCTTCGCAAAT+GGG | + | chr8.1:67435462-67435481 | MS.gene23647:CDS | 40.0% | |
| TCATTCCACCTGTTACAAAG+AGG | + | chr8.1:67436909-67436928 | MS.gene23647:CDS | 40.0% | |
| TGGTCTAGTTGGAAGAAACT+AGG | + | chr8.1:67435427-67435446 | MS.gene23647:CDS | 40.0% | |
| TTCACATTGAGCTTCGCAAA+TGG | + | chr8.1:67435461-67435480 | MS.gene23647:CDS | 40.0% | |
| TTGAGATGCATCAATTCACG+TGG | + | chr8.1:67436336-67436355 | MS.gene23647:intron | 40.0% | |
| ! | CAGCCATGAACACTTTTATG+TGG | + | chr8.1:67436831-67436850 | MS.gene23647:CDS | 40.0% |
| !! | CACATAAAAGTGTTCATGGC+TGG | - | chr8.1:67436833-67436852 | None:intergenic | 40.0% |
| !! | GTTACAAAGAGGTTAGCTTG+TGG | + | chr8.1:67436920-67436939 | MS.gene23647:CDS | 40.0% |
| !! | TACAAAGAGGTTAGCTTGTG+GGG | + | chr8.1:67436922-67436941 | MS.gene23647:CDS | 40.0% |
| !! | TGTTTGCTGTTGTAGATTGC+TGG | + | chr8.1:67436737-67436756 | MS.gene23647:intron | 40.0% |
| ACGACGATGAATGGTCTAGT+TGG | + | chr8.1:67435416-67435435 | MS.gene23647:CDS | 45.0% | |
| AGTAAAATCCGAGGCTTCCT+GGG | - | chr8.1:67435247-67435266 | None:intergenic | 45.0% | |
| ATACCAGGCGTACCAAAGAA+AGG | + | chr8.1:67436376-67436395 | MS.gene23647:intron | 45.0% | |
| ATGGCTGGTGCAACAAAGAA+TGG | - | chr8.1:67436818-67436837 | None:intergenic | 45.0% | |
| CAACTGAACTCACAGGTTCT+GGG | - | chr8.1:67435195-67435214 | None:intergenic | 45.0% | |
| CAGGAAACATGGAAGCAAAC+GGG | - | chr8.1:67435591-67435610 | None:intergenic | 45.0% | |
| CATGGTCATTGCTCCATTGT+CGG | + | chr8.1:67435492-67435511 | MS.gene23647:CDS | 45.0% | |
| CTAGTAGCGAGTAAAATCCG+AGG | - | chr8.1:67435256-67435275 | None:intergenic | 45.0% | |
| GATGTTAGCAACGCAAGAGT+TGG | + | chr8.1:67435964-67435983 | MS.gene23647:intron | 45.0% | |
| GCTAACCTCTTTGTAACAGG+TGG | - | chr8.1:67436917-67436936 | None:intergenic | 45.0% | |
| GGAACAATCCTTTCACAGAG+CGG | + | chr8.1:67436852-67436871 | MS.gene23647:CDS | 45.0% | |
| GGATTATGGCAATGGTGCAA+TGG | + | chr8.1:67436943-67436962 | MS.gene23647:CDS | 45.0% | |
| TATCCTTTCTTTGGTACGCC+TGG | - | chr8.1:67436382-67436401 | None:intergenic | 45.0% | |
| TATGAGTCAAAGGCTCAGCA+AGG | + | chr8.1:67437004-67437023 | MS.gene23647:CDS | 45.0% | |
| TCAAAGGCTCAGCAAGGTAA+CGG | + | chr8.1:67437010-67437029 | MS.gene23647:CDS | 45.0% | |
| TGAAAGAACAGCGATTCCCA+AGG | + | chr8.1:67435375-67435394 | MS.gene23647:CDS | 45.0% | |
| TGCTGTTGTAGATTGCTGGA+GGG | + | chr8.1:67436741-67436760 | MS.gene23647:intron | 45.0% | |
| TGTATACGGACGACGATGAA+TGG | + | chr8.1:67435407-67435426 | MS.gene23647:CDS | 45.0% | |
| TTCTCTCCAACTGAACTCAC+AGG | - | chr8.1:67435202-67435221 | None:intergenic | 45.0% | |
| TTTCTTTGGTACGCCTGGTA+TGG | - | chr8.1:67436377-67436396 | None:intergenic | 45.0% | |
| TTTGCACAAACTGCCATACC+AGG | + | chr8.1:67436361-67436380 | MS.gene23647:intron | 45.0% | |
| ! | AAGAAGATGGAAGACTGGCT+AGG | - | chr8.1:67435768-67435787 | None:intergenic | 45.0% |
| ! | CCGTTACAGGTTAGTTGCTA+AGG | - | chr8.1:67436165-67436184 | None:intergenic | 45.0% |
| ! | CGGATTTTACTCGCTACTAG+TGG | + | chr8.1:67435256-67435275 | MS.gene23647:CDS | 45.0% |
| ! | TCGCAATTCGCATTGGTACA+CGG | - | chr8.1:67436509-67436528 | None:intergenic | 45.0% |
| ! | TTGCTGTTGTAGATTGCTGG+AGG | + | chr8.1:67436740-67436759 | MS.gene23647:intron | 45.0% |
| !! | AATTCGCGAGTACCGAATTC+GGG | + | chr8.1:67436301-67436320 | MS.gene23647:intron | 45.0% |
| !! | AGGTTAGCTTGTGGGGATTA+TGG | + | chr8.1:67436929-67436948 | MS.gene23647:CDS | 45.0% |
| !! | CAATTCGCGAGTACCGAATT+CGG | + | chr8.1:67436300-67436319 | MS.gene23647:intron | 45.0% |
| !! | TACTAGTGGAAGTGTTGCTG+CGG | + | chr8.1:67435270-67435289 | MS.gene23647:CDS | 45.0% |
| !! | TCGCAAATGGGCTGATATCA+TGG | + | chr8.1:67435474-67435493 | MS.gene23647:CDS | 45.0% |
| ATGAGATGCCGCTCTGTGAA+AGG | - | chr8.1:67436863-67436882 | None:intergenic | 50.0% | |
| CCAACTGAACTCACAGGTTC+TGG | - | chr8.1:67435196-67435215 | None:intergenic | 50.0% | |
| CCAGAACCTGTGAGTTCAGT+TGG | + | chr8.1:67435193-67435212 | MS.gene23647:CDS | 50.0% | |
| CCATTGTCGGCAAACACTCT+TGG | + | chr8.1:67435505-67435524 | MS.gene23647:CDS | 50.0% | |
| CGAATTCGGTACTCGCGAAT+TGG | - | chr8.1:67436302-67436321 | None:intergenic | 50.0% | |
| CTCATCTCCATTGACGAGCT+TGG | + | chr8.1:67436878-67436897 | MS.gene23647:CDS | 50.0% | |
| GAGTAAAATCCGAGGCTTCC+TGG | - | chr8.1:67435248-67435267 | None:intergenic | 50.0% | |
| GCTTGTGGGGATTATGGCAA+TGG | + | chr8.1:67436935-67436954 | MS.gene23647:CDS | 50.0% | |
| GTAAAATCCGAGGCTTCCTG+GGG | - | chr8.1:67435246-67435265 | None:intergenic | 50.0% | |
| TAAAATCCGAGGCTTCCTGG+GGG | - | chr8.1:67435245-67435264 | None:intergenic | 50.0% | |
| ! | CGAATTGGTTCACGCCTTCA+CGG | - | chr8.1:67436287-67436306 | None:intergenic | 50.0% |
| ! | TTCGCATTGGTACACGGTAC+AGG | - | chr8.1:67436503-67436522 | None:intergenic | 50.0% |
| !! | CCAAGAGTGTTTGCCGACAA+TGG | - | chr8.1:67435508-67435527 | None:intergenic | 50.0% |
| !! | GAATGGCTTGCTATAGTCCC+AGG | - | chr8.1:67436801-67436820 | None:intergenic | 50.0% |
| CACATGTATCGTGCGAGCCT+GGG | + | chr8.1:67436781-67436800 | MS.gene23647:CDS | 55.0% | |
| CACTAGGCAGAGAACCGTGA+AGG | + | chr8.1:67436270-67436289 | MS.gene23647:intron | 55.0% | |
| GAGAGCAAGCTCTTCTGCAC+TGG | + | chr8.1:67436031-67436050 | MS.gene23647:intron | 55.0% | |
| GTCGGCAAACACTCTTGGCA+AGG | + | chr8.1:67435510-67435529 | MS.gene23647:CDS | 55.0% | |
| TCACATGTATCGTGCGAGCC+TGG | + | chr8.1:67436780-67436799 | MS.gene23647:CDS | 55.0% | |
| TGGTACACGGTACAGGTTCG+CGG | - | chr8.1:67436496-67436515 | None:intergenic | 55.0% | |
| !! | TGAACTCACAGGTTCTGGGC+TGG | - | chr8.1:67435191-67435210 | None:intergenic | 55.0% |
| CAGTGAATGCTGCTGCCCCC+AGG | + | chr8.1:67435227-67435246 | MS.gene23647:CDS | 65.0% | |
| CTGCTGCCCCCAGGAAGCCT+CGG | + | chr8.1:67435236-67435255 | MS.gene23647:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 67435181 | 67437042 | 67435181 | ID=MS.gene23647 |
| chr8.1 | mRNA | 67435181 | 67437042 | 67435181 | ID=MS.gene23647.t1;Parent=MS.gene23647 |
| chr8.1 | exon | 67435181 | 67435531 | 67435181 | ID=MS.gene23647.t1.exon1;Parent=MS.gene23647.t1 |
| chr8.1 | CDS | 67435181 | 67435531 | 67435181 | ID=cds.MS.gene23647.t1;Parent=MS.gene23647.t1 |
| chr8.1 | exon | 67436752 | 67437042 | 67436752 | ID=MS.gene23647.t1.exon2;Parent=MS.gene23647.t1 |
| chr8.1 | CDS | 67436752 | 67437042 | 67436752 | ID=cds.MS.gene23647.t1;Parent=MS.gene23647.t1 |
| Gene Sequence |
| Protein sequence |
