Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88038.t1 | XP_003605398.2 | 96.2 | 924 | 32 | 1 | 1 | 921 | 5 | 928 | 0.00E+00 | 1648.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88038.t1 | Q8CFE4 | 32.7 | 618 | 384 | 14 | 10 | 614 | 7 | 605 | 1.4e-82 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88038.t1 | G7JKS9 | 96.2 | 924 | 32 | 1 | 1 | 921 | 5 | 928 | 0.0e+00 | 1648.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050786 | MS.gene88038 | 0.810445 | 1.15E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33357 | MS.gene88038 | PPI |
| MS.gene88038 | MS.gene033983 | PPI |
| MS.gene88038 | MS.gene36285 | PPI |
| MS.gene88038 | MS.gene79543 | PPI |
| MS.gene89100 | MS.gene88038 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88038.t1 | MTR_4g030910 | 97.294 | 924 | 22 | 1 | 1 | 921 | 5 | 928 | 0.0 | 1850 |
| MS.gene88038.t1 | MTR_6g086565 | 22.593 | 509 | 334 | 11 | 92 | 581 | 58 | 525 | 1.32e-23 | 107 |
| MS.gene88038.t1 | MTR_6g086565 | 22.491 | 578 | 372 | 15 | 23 | 581 | 5 | 525 | 5.94e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88038.t1 | AT1G22870 | 65.960 | 943 | 264 | 12 | 1 | 920 | 5 | 913 | 0.0 | 1220 |
| MS.gene88038.t1 | AT1G71410 | 65.086 | 928 | 293 | 12 | 1 | 920 | 5 | 909 | 0.0 | 1189 |
| MS.gene88038.t1 | AT1G71410 | 65.086 | 928 | 293 | 12 | 1 | 920 | 5 | 909 | 0.0 | 1189 |
| MS.gene88038.t1 | AT1G22870 | 68.547 | 833 | 221 | 7 | 1 | 820 | 5 | 809 | 0.0 | 1173 |
| MS.gene88038.t1 | AT1G22870 | 63.043 | 782 | 232 | 12 | 162 | 920 | 1 | 748 | 0.0 | 946 |
| MS.gene88038.t1 | AT1G22870 | 61.838 | 718 | 217 | 12 | 226 | 920 | 9 | 692 | 0.0 | 835 |
| MS.gene88038.t1 | AT2G40730 | 22.383 | 621 | 392 | 17 | 36 | 627 | 18 | 577 | 2.75e-20 | 97.1 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGACTCAACAGAATTT+TGG | 0.150104 | 4.3:-69566117 | None:intergenic |
| CTTGACAAAGAGCATATATT+TGG | 0.211975 | 4.3:-69565360 | None:intergenic |
| CAAAATAATTTGCCCTTATC+TGG | 0.217176 | 4.3:+69565782 | MS.gene88038:CDS |
| AATTCCAACAATGGTATTTC+AGG | 0.220096 | 4.3:+69566013 | MS.gene88038:CDS |
| TCTCTTCAAATGAATCTTTC+AGG | 0.221457 | 4.3:+69558942 | MS.gene88038:CDS |
| CACTGAGCAGCCACCCCTTT+TGG | 0.226191 | 4.3:+69566429 | MS.gene88038:CDS |
| CTTCTCTTGGGATGCAGATT+GGG | 0.235573 | 4.3:+69565661 | MS.gene88038:CDS |
| TCTGGTCTTACCTCACAATT+TGG | 0.249950 | 4.3:+69565872 | MS.gene88038:CDS |
| GTTACGTGCTCTGCGTTTCC+TGG | 0.252212 | 4.3:+69560781 | MS.gene88038:CDS |
| TAGATGTATTAATAGAATTC+TGG | 0.257450 | 4.3:-69565715 | None:intergenic |
| GCCTGGAAACTTGGTGGATT+TGG | 0.258496 | 4.3:+69555646 | MS.gene88038:CDS |
| GGAGTTGCTGTGACTGATTC+TGG | 0.265135 | 4.3:+69565545 | MS.gene88038:CDS |
| CACCTGGGTATCAAGTTCTT+TGG | 0.281777 | 4.3:-69562814 | None:intergenic |
| TGGCCGCCTCGTGCATCTTC+TGG | 0.283391 | 4.3:+69565854 | MS.gene88038:CDS |
| GAAGAACATGTGAAATTAAA+TGG | 0.302392 | 4.3:-69562716 | None:intergenic |
| TTGGCGGGGCCCGTTGCTTT+AGG | 0.304433 | 4.3:-69565686 | None:intergenic |
| TGTTTGGGTGTTGGATAAAA+AGG | 0.304989 | 4.3:+69553866 | MS.gene88038:CDS |
| TAGTGTTCCTAAGGATCTTA+AGG | 0.313077 | 4.3:+69554109 | MS.gene88038:CDS |
| AGGAGCACCGCTTCTTCAGC+TGG | 0.315176 | 4.3:+69558119 | MS.gene88038:CDS |
| TTTGAACCTCAGAGTTCTCT+TGG | 0.315441 | 4.3:+69566190 | MS.gene88038:CDS |
| AGAGGGCGGGGAAGAGGCAG+AGG | 0.321338 | 4.3:+69566367 | MS.gene88038:CDS |
| AGTATCCGGTTGTTTGTGTT+TGG | 0.324371 | 4.3:+69553850 | MS.gene88038:CDS |
| CTCAGGAGCAGTGTAATTAA+TGG | 0.336076 | 4.3:-69558090 | None:intergenic |
| GCTTCTCTTGGGATGCAGAT+TGG | 0.355593 | 4.3:+69565660 | MS.gene88038:CDS |
| CCTCTACCCACTGTGGTTGA+AGG | 0.358197 | 4.3:-69566349 | None:intergenic |
| CCGAGACGGATCGCGTGATT+TGG | 0.361097 | 4.3:-69553820 | None:intergenic |
| TCCTGCAGTTAACGGCCTTC+AGG | 0.362743 | 4.3:+69565589 | MS.gene88038:CDS |
| GAGAGCATCCTTTGCAAGTC+AGG | 0.364314 | 4.3:-69558923 | None:intergenic |
| GAATAGTTTGCAAGATTTCC+AGG | 0.366270 | 4.3:-69565065 | None:intergenic |
| CAACCCTTATGTGTACCCTT+GGG | 0.366688 | 4.3:+69565118 | MS.gene88038:CDS |
| GTGGGTAGAGGGCGGGGAAG+AGG | 0.367494 | 4.3:+69566361 | MS.gene88038:CDS |
| CTTGGCAGACCAATTGTTGC+TGG | 0.367793 | 4.3:-69566092 | None:intergenic |
| TTCATTAATTTGCAGGAAAT+GGG | 0.374196 | 4.3:+69555235 | MS.gene88038:intron |
| AAGGCTTGCGAGCAATTAAA+TGG | 0.376579 | 4.3:-69558181 | None:intergenic |
| CTCATCTATCCCATCGGATC+TGG | 0.376874 | 4.3:+69558898 | MS.gene88038:CDS |
| AATGTTAAATCAACTGATCT+TGG | 0.377809 | 4.3:+69566271 | MS.gene88038:CDS |
| TGCGAGTTGTTCATTCTTGT+TGG | 0.378453 | 4.3:-69566308 | None:intergenic |
| TCATAGTCTTGAAGAGGCTT+TGG | 0.381479 | 4.3:-69553741 | None:intergenic |
| ACCAAATCCACCAAGTTTCC+AGG | 0.381691 | 4.3:-69555647 | None:intergenic |
| CGCCCTAGTGGTTCATTATC+CGG | 0.389618 | 4.3:+69565980 | MS.gene88038:CDS |
| TGTGCATGTTGTTCAAGGTT+TGG | 0.391667 | 4.3:+69554001 | MS.gene88038:CDS |
| CAGACCAATTGTTGCTGGCC+TGG | 0.396129 | 4.3:-69566087 | None:intergenic |
| TTCTTGAACGGTTGTTGAAA+CGG | 0.402267 | 4.3:-69553709 | None:intergenic |
| AATAGAATTCTGGACAGAAT+TGG | 0.402583 | 4.3:-69565705 | None:intergenic |
| ACATCTAATAAATCTGTGAT+AGG | 0.404562 | 4.3:+69565731 | MS.gene88038:CDS |
| GGTTCATTATCCGGTGCATC+TGG | 0.404706 | 4.3:+69565989 | MS.gene88038:CDS |
| GTCTCCAGGCCAGCAACAAT+TGG | 0.407124 | 4.3:+69566083 | MS.gene88038:CDS |
| CAACCCCAAGGGTACACATA+AGG | 0.408326 | 4.3:-69565122 | None:intergenic |
| CATTCCTGAAATACCATTGT+TGG | 0.413881 | 4.3:-69566017 | None:intergenic |
| AATTCAATGACAAGCAATCT+TGG | 0.414645 | 4.3:+69566061 | MS.gene88038:CDS |
| ACGGTGCTGCTGGCTGTCCT+TGG | 0.416299 | 4.3:-69565620 | None:intergenic |
| GGAATGGCATTAAACAAGAT+AGG | 0.419727 | 4.3:+69566034 | MS.gene88038:CDS |
| ATAGATGAGCTAGCATTCCT+TGG | 0.421853 | 4.3:-69566148 | None:intergenic |
| TTTAACCATTGCAGAGTCTC+AGG | 0.422067 | 4.3:+69561881 | MS.gene88038:CDS |
| CTGATTAGATACACCAGATA+AGG | 0.422357 | 4.3:-69565795 | None:intergenic |
| CCGCCGGTCCCGCTTTAGCC+TGG | 0.424630 | 4.3:+69553784 | MS.gene88038:CDS |
| TACCTTGTTTATTATTAGCT+CGG | 0.424935 | 4.3:-69562592 | None:intergenic |
| CCTGTCTTAAGCACTGCTTC+TGG | 0.425601 | 4.3:+69562540 | MS.gene88038:CDS |
| AGGATCATCATCTTCAAGAT+TGG | 0.428641 | 4.3:-69565939 | None:intergenic |
| ACGTGAATCATTATCATCAT+AGG | 0.429078 | 4.3:-69562754 | None:intergenic |
| ATGTTCCACTCACAGCATAA+TGG | 0.430542 | 4.3:-69555720 | None:intergenic |
| GCTTCTGTTGCGAATACTCT+CGG | 0.432489 | 4.3:+69554068 | MS.gene88038:CDS |
| TCATAGGCTCGAACAATCAT+TGG | 0.434291 | 4.3:-69562738 | None:intergenic |
| GTATCCGGTTGTTTGTGTTT+GGG | 0.436065 | 4.3:+69553851 | MS.gene88038:CDS |
| GAGGTTCAAAGCCATTGTTC+AGG | 0.439568 | 4.3:-69566177 | None:intergenic |
| CTCTACCCACTGTGGTTGAA+GGG | 0.439883 | 4.3:-69566348 | None:intergenic |
| GGGATTGTGCATGTTGTTCA+AGG | 0.441726 | 4.3:+69553996 | MS.gene88038:CDS |
| TGGGTTCTTGAAACAAAGTC+AGG | 0.443828 | 4.3:+69566210 | MS.gene88038:CDS |
| CAAAATTCTGTTGAGTCTAT+CGG | 0.444939 | 4.3:+69566118 | MS.gene88038:CDS |
| TTGAACCTCAGAGTTCTCTT+GGG | 0.445956 | 4.3:+69566191 | MS.gene88038:CDS |
| CCAACCCTTATGTGTACCCT+TGG | 0.446020 | 4.3:+69565117 | MS.gene88038:CDS |
| TGTTGAAGCAACGGTGCTGC+TGG | 0.447729 | 4.3:-69565630 | None:intergenic |
| ATGGTTAGGTTGAGACATCC+TGG | 0.449776 | 4.3:+69553975 | MS.gene88038:CDS |
| TAAAAGCATTGTCAGATATG+TGG | 0.451916 | 4.3:+69560942 | MS.gene88038:CDS |
| TTTGGCGGAGTAAAGTTTCC+AGG | 0.454017 | 4.3:-69553802 | None:intergenic |
| AAACTATCTCCTGCAGTTAA+CGG | 0.459043 | 4.3:+69565581 | MS.gene88038:CDS |
| GACAAGCAATCTTGGTCTCC+AGG | 0.459052 | 4.3:+69566069 | MS.gene88038:CDS |
| TGGATGCTGGGAAGATGGTT+AGG | 0.459231 | 4.3:+69553961 | MS.gene88038:CDS |
| CATTCAGCTGTTGAGCAGTC+AGG | 0.461966 | 4.3:-69565325 | None:intergenic |
| CTTAAGACAGGGACAAGGGC+TGG | 0.463233 | 4.3:-69562528 | None:intergenic |
| CGGGACCGGCGGAACCGATC+TGG | 0.463244 | 4.3:-69553773 | None:intergenic |
| CCTGTAAAATCCATTGCACT+TGG | 0.463536 | 4.3:-69558965 | None:intergenic |
| GCGGTGCTCCTCACCATCTC+AGG | 0.464113 | 4.3:-69558107 | None:intergenic |
| GGTTGTTTGTGTTTGGGTGT+TGG | 0.466419 | 4.3:+69553857 | MS.gene88038:CDS |
| GATTGGGGTCCTAAAGCAAC+GGG | 0.466852 | 4.3:+69565677 | MS.gene88038:CDS |
| AACACCCAAACACAAACAAC+CGG | 0.467481 | 4.3:-69553855 | None:intergenic |
| ACCATTCCCTTAAGATCCTT+AGG | 0.469358 | 4.3:-69554116 | None:intergenic |
| TTCAAGATTGGATGTGGATG+AGG | 0.470079 | 4.3:-69565927 | None:intergenic |
| AAAAGCATCCTCAGCAGCCT+TGG | 0.473388 | 4.3:-69553922 | None:intergenic |
| TTCTTACAAGCATGTGGTCC+AGG | 0.474406 | 4.3:-69560799 | None:intergenic |
| CACCACTTTGTGCAGAACTT+AGG | 0.475258 | 4.3:+69561823 | MS.gene88038:CDS |
| CTTGGTATGAGAGTGCTGTC+TGG | 0.480296 | 4.3:-69566401 | None:intergenic |
| ACCACAGTGGGTAGAGGGCG+GGG | 0.480384 | 4.3:+69566355 | MS.gene88038:CDS |
| AGTGTTCCTAAGGATCTTAA+GGG | 0.487246 | 4.3:+69554110 | MS.gene88038:CDS |
| AACCACAGTGGGTAGAGGGC+GGG | 0.487860 | 4.3:+69566354 | MS.gene88038:CDS |
| TTTGCAGGAAATGGGACTGT+TGG | 0.490194 | 4.3:+69555243 | MS.gene88038:intron |
| GAATAAGATGGGCATGGTTG+TGG | 0.490924 | 4.3:-69555312 | None:intergenic |
| TAATGTTTCTAGTGTTCCTA+AGG | 0.492603 | 4.3:+69554100 | MS.gene88038:CDS |
| GTTAGCCCAACAAATCCAAA+AGG | 0.494123 | 4.3:-69566444 | None:intergenic |
| CCTTCAACCACAGTGGGTAG+AGG | 0.497028 | 4.3:+69566349 | MS.gene88038:CDS |
| AACCCCAAGGGTACACATAA+GGG | 0.498164 | 4.3:-69565121 | None:intergenic |
| TTCTCTTGGGATGCAGATTG+GGG | 0.498334 | 4.3:+69565662 | MS.gene88038:CDS |
| CAACAATGGTATTTCAGGAA+TGG | 0.499806 | 4.3:+69566018 | MS.gene88038:CDS |
| GATTTGATTAGGATGGATGC+TGG | 0.499807 | 4.3:+69553948 | MS.gene88038:CDS |
| TTATCACATTGAGTGGAGCC+TGG | 0.500197 | 4.3:+69555629 | MS.gene88038:CDS |
| ACCTGAAGGCCGTTAACTGC+AGG | 0.504180 | 4.3:-69565590 | None:intergenic |
| TGATTCACGTTTACAAGAAG+AGG | 0.505008 | 4.3:+69562767 | MS.gene88038:CDS |
| TGGCTGCTCAGTGCTTGACT+TGG | 0.506533 | 4.3:-69566419 | None:intergenic |
| ATCTTTCAGGCCAAGTGCAA+TGG | 0.508729 | 4.3:+69558955 | MS.gene88038:CDS |
| TTTCCAGGCTAAAGCGGGAC+CGG | 0.509058 | 4.3:-69553787 | None:intergenic |
| CTCCACCAGATCGGTTCCGC+CGG | 0.511316 | 4.3:+69553768 | MS.gene88038:CDS |
| TGATTAGATACACCAGATAA+GGG | 0.512264 | 4.3:-69565794 | None:intergenic |
| GTCTCGGCAGCATCAGTATC+CGG | 0.513495 | 4.3:+69553836 | MS.gene88038:CDS |
| TTGAGTGGAGCCTGGAAACT+TGG | 0.514583 | 4.3:+69555637 | MS.gene88038:CDS |
| AGACGGATCGCGTGATTTGG+CGG | 0.516807 | 4.3:-69553817 | None:intergenic |
| TTCCCGTGTATTACGATACA+AGG | 0.517523 | 4.3:+69560976 | MS.gene88038:CDS |
| CACAATTTGGTGATACTGAA+AGG | 0.517575 | 4.3:+69565885 | MS.gene88038:CDS |
| TCCTTGGAGCTTCCACCTGA+AGG | 0.517584 | 4.3:-69565604 | None:intergenic |
| ATCATCTTCAAGATTGGATG+TGG | 0.518956 | 4.3:-69565933 | None:intergenic |
| ACTTGATAAACATGCTGTCC+TGG | 0.519009 | 4.3:+69565047 | MS.gene88038:CDS |
| TGGACCGGTTACTTCTTGAA+CGG | 0.519539 | 4.3:-69553721 | None:intergenic |
| ACAACCGTTCAAGAAGTAAC+CGG | 0.522354 | 4.3:+69553717 | MS.gene88038:CDS |
| TCCTAAGGATCTTAAGGGAA+TGG | 0.524386 | 4.3:+69554115 | MS.gene88038:CDS |
| CGTGGAGGCCAATCAGCAAA+AGG | 0.525518 | 4.3:-69565959 | None:intergenic |
| AAAACCATTGGTAGAATCAT+CGG | 0.526198 | 4.3:-69561861 | None:intergenic |
| GTTGTCGGAGGCGAGATTGA+AGG | 0.527063 | 4.3:+69553890 | MS.gene88038:CDS |
| TAGATGAGCTAGCATTCCTT+GGG | 0.527101 | 4.3:-69566147 | None:intergenic |
| TAGGATGGATGCTGGGAAGA+TGG | 0.527113 | 4.3:+69553956 | MS.gene88038:CDS |
| GTCAGGAGTGGCATAAGCAA+TGG | 0.528064 | 4.3:-69565308 | None:intergenic |
| TGCAGATTAGATGAGTCACC+AGG | 0.531071 | 4.3:-69555691 | None:intergenic |
| ACTTCAGATTGCGGAGTCGT+TGG | 0.532035 | 4.3:+69555282 | MS.gene88038:CDS |
| CCAGAAGCAGTGCTTAAGAC+AGG | 0.532674 | 4.3:-69562540 | None:intergenic |
| ATGGATGTTACTTGACCCAC+AGG | 0.532744 | 4.3:-69565758 | None:intergenic |
| GGGTATCAAGTTCTTTGGCA+AGG | 0.533522 | 4.3:-69562809 | None:intergenic |
| GTCGGTTGACCATGTCTCCT+AGG | 0.533647 | 4.3:-69565026 | None:intergenic |
| TCTGCAATGGTTAAAACCAT+TGG | 0.534089 | 4.3:-69561873 | None:intergenic |
| ACAACCGATGATTCTACCAA+TGG | 0.534149 | 4.3:+69561857 | MS.gene88038:CDS |
| CTTCTGTTGCGAATACTCTC+GGG | 0.534266 | 4.3:+69554069 | MS.gene88038:CDS |
| ATCTGGTTCCTGACTTGCAA+AGG | 0.535675 | 4.3:+69558915 | MS.gene88038:CDS |
| AGTCTATCGGTTTGAACCCA+AGG | 0.536167 | 4.3:+69566131 | MS.gene88038:CDS |
| GGAGCACCGCTTCTTCAGCT+GGG | 0.536700 | 4.3:+69558120 | MS.gene88038:CDS |
| GATAGATGAGAAAGCATCAC+TGG | 0.538809 | 4.3:-69558885 | None:intergenic |
| CTATAGCTCGATGAATAAGA+TGG | 0.539156 | 4.3:-69555324 | None:intergenic |
| AACCCTTATGTGTACCCTTG+GGG | 0.539200 | 4.3:+69565119 | MS.gene88038:CDS |
| TAAAGTTTCCAGGCTAAAGC+GGG | 0.541551 | 4.3:-69553792 | None:intergenic |
| GAAAGGAAAACAGTTGCAGC+TGG | 0.543442 | 4.3:+69565902 | MS.gene88038:CDS |
| TGAACAACATGCACAATCCC+AGG | 0.543969 | 4.3:-69553993 | None:intergenic |
| CCAAATCACGCGATCCGTCT+CGG | 0.544998 | 4.3:+69553820 | MS.gene88038:CDS |
| CTGCAACAACAATGTCAAGA+TGG | 0.545814 | 4.3:+69558211 | MS.gene88038:CDS |
| AAATAGAATTTGCAACCCCA+AGG | 0.546112 | 4.3:-69565134 | None:intergenic |
| TTAGCCCAACAAATCCAAAA+GGG | 0.549333 | 4.3:-69566443 | None:intergenic |
| CGGAACCGATCTGGTGGAGA+AGG | 0.549366 | 4.3:-69553764 | None:intergenic |
| TCTACCCACTGTGGTTGAAG+GGG | 0.551211 | 4.3:-69566347 | None:intergenic |
| GCAATTTCTTCTCAGAACCC+TGG | 0.553112 | 4.3:+69555673 | MS.gene88038:CDS |
| GAATGGCATTAAACAAGATA+GGG | 0.554755 | 4.3:+69566035 | MS.gene88038:CDS |
| TGCAGTTAACGGCCTTCAGG+TGG | 0.554887 | 4.3:+69565592 | MS.gene88038:CDS |
| GTCTTGAAGAGGCTTTGGAC+CGG | 0.555825 | 4.3:-69553736 | None:intergenic |
| GCAGGAAATGGGACTGTTGG+AGG | 0.556431 | 4.3:+69555246 | MS.gene88038:intron |
| CTTCAACCACAGTGGGTAGA+GGG | 0.556677 | 4.3:+69566350 | MS.gene88038:CDS |
| AGGGTACACATAAGGGTTGG+AGG | 0.558649 | 4.3:-69565114 | None:intergenic |
| GACCGGCGGAACCGATCTGG+TGG | 0.559500 | 4.3:-69553770 | None:intergenic |
| TGCTTTCTCATCTATCCCAT+CGG | 0.560584 | 4.3:+69558892 | MS.gene88038:CDS |
| GGTATCAAGTTCTTTGGCAA+GGG | 0.560592 | 4.3:-69562808 | None:intergenic |
| GTTGGAATTTCCAGATGCAC+CGG | 0.560597 | 4.3:-69565999 | None:intergenic |
| TTTGCTTTGCCTAGGAGACA+TGG | 0.560638 | 4.3:+69565017 | MS.gene88038:CDS |
| AGAATTCTGGACAGAATTGG+CGG | 0.561941 | 4.3:-69565702 | None:intergenic |
| GAATTCTGGACAGAATTGGC+GGG | 0.562938 | 4.3:-69565701 | None:intergenic |
| CAACCACAGTGGGTAGAGGG+CGG | 0.565663 | 4.3:+69566353 | MS.gene88038:CDS |
| TAATTACACTGCTCCTGAGA+TGG | 0.566358 | 4.3:+69558094 | MS.gene88038:CDS |
| CTTGCGAGCAATTAAATGGT+AGG | 0.568377 | 4.3:-69558177 | None:intergenic |
| GTCAATGCTTTGCTTTGCCT+AGG | 0.569127 | 4.3:+69565009 | MS.gene88038:CDS |
| CGCCGAGCTAATAATAAACA+AGG | 0.570376 | 4.3:+69562590 | MS.gene88038:CDS |
| GCATGGTTTACTTCAGATTG+CGG | 0.574438 | 4.3:+69555273 | MS.gene88038:CDS |
| AAGTCAGGAACCAGATCCGA+TGG | 0.578931 | 4.3:-69558908 | None:intergenic |
| TGGATTGACCAAGGCTGCTG+AGG | 0.580631 | 4.3:+69553914 | MS.gene88038:CDS |
| CTACCCACTGTGGTTGAAGG+GGG | 0.582446 | 4.3:-69566346 | None:intergenic |
| GTAAAGTTTCCAGGCTAAAG+CGG | 0.583849 | 4.3:-69553793 | None:intergenic |
| CTAAGTTCTGCACAAAGTGG+TGG | 0.585328 | 4.3:-69561822 | None:intergenic |
| TCGGAGGCGAGATTGAAGGC+TGG | 0.591058 | 4.3:+69553894 | MS.gene88038:CDS |
| TCAAAATTCTTACAAGCATG+TGG | 0.591284 | 4.3:-69560805 | None:intergenic |
| GCACCGGATAATGAACCACT+AGG | 0.592652 | 4.3:-69565983 | None:intergenic |
| TGCCAAAGAACTTGATACCC+AGG | 0.592784 | 4.3:+69562812 | MS.gene88038:CDS |
| GATGAAACAACATTTGATGC+CGG | 0.594371 | 4.3:-69566238 | None:intergenic |
| GGACAGCATGTTTATCAAGT+CGG | 0.595468 | 4.3:-69565044 | None:intergenic |
| GCCTTCAGGTGGAAGCTCCA+AGG | 0.597591 | 4.3:+69565603 | MS.gene88038:CDS |
| CAGTGCTTAAGACAGGGACA+AGG | 0.599466 | 4.3:-69562533 | None:intergenic |
| TTCAGTATCACCAAATTGTG+AGG | 0.603278 | 4.3:-69565882 | None:intergenic |
| CCAAGGGTACACATAAGGGT+TGG | 0.603498 | 4.3:-69565117 | None:intergenic |
| GAGTAAGAATGCGATGGCGA+TGG | 0.606867 | 4.3:+69554028 | MS.gene88038:CDS |
| TGGTTAGGTTGAGACATCCT+GGG | 0.607429 | 4.3:+69553976 | MS.gene88038:CDS |
| TTGTTGTTGCAGTCAAACAA+AGG | 0.610321 | 4.3:-69558200 | None:intergenic |
| GATAATGAACCACTAGGGCG+TGG | 0.610882 | 4.3:-69565977 | None:intergenic |
| CTCGATGAATAAGATGGGCA+TGG | 0.611719 | 4.3:-69555318 | None:intergenic |
| CCAGGCTAAAGCGGGACCGG+CGG | 0.612691 | 4.3:-69553784 | None:intergenic |
| GATTGGCCTCCACGCCCTAG+TGG | 0.614962 | 4.3:+69565968 | MS.gene88038:CDS |
| GGATACTGATGCTGCCGAGA+CGG | 0.614983 | 4.3:-69553834 | None:intergenic |
| TAATTAATGGATGGCTGAAG+TGG | 0.616939 | 4.3:-69558077 | None:intergenic |
| AATAGAATTTGCAACCCCAA+GGG | 0.617052 | 4.3:-69565133 | None:intergenic |
| AGTGGAGCCTGGAAACTTGG+TGG | 0.619812 | 4.3:+69555640 | MS.gene88038:CDS |
| AGCTGTTGAGCAGTCAGGAG+TGG | 0.622583 | 4.3:-69565320 | None:intergenic |
| GGAGCAGTGTAATTAATGGA+TGG | 0.623150 | 4.3:-69558086 | None:intergenic |
| TATAGCTCGATGAATAAGAT+GGG | 0.623474 | 4.3:-69555323 | None:intergenic |
| CCCAACAAATCCAAAAGGGG+TGG | 0.624443 | 4.3:-69566439 | None:intergenic |
| ATACCTTGTATCGTAATACA+CGG | 0.624670 | 4.3:-69560979 | None:intergenic |
| AGATTGGGGTCCTAAAGCAA+CGG | 0.625317 | 4.3:+69565676 | MS.gene88038:CDS |
| ATAGCACCCAGCTGAAGAAG+CGG | 0.627731 | 4.3:-69558126 | None:intergenic |
| GTCCTTCAGTAGATATAGAG+TGG | 0.630206 | 4.3:+69565834 | MS.gene88038:CDS |
| GTTCTGCACAAAGTGGTGGA+AGG | 0.631669 | 4.3:-69561818 | None:intergenic |
| CAGAAGCAGTGCTTAAGACA+GGG | 0.633050 | 4.3:-69562539 | None:intergenic |
| GCATCTGGAAATTCCAACAA+TGG | 0.635190 | 4.3:+69566004 | MS.gene88038:CDS |
| TATGACCTTCTCCACCAGAT+CGG | 0.638121 | 4.3:+69553759 | MS.gene88038:CDS |
| ACACTGCTCCTGAGATGGTG+AGG | 0.638853 | 4.3:+69558099 | MS.gene88038:CDS |
| TCATCGAGCTATAGCACCCG+AGG | 0.639167 | 4.3:+69555333 | MS.gene88038:CDS |
| GGATGAGAGTAAGAATGCGA+TGG | 0.639503 | 4.3:+69554022 | MS.gene88038:CDS |
| AATTCTGGACAGAATTGGCG+GGG | 0.640042 | 4.3:-69565700 | None:intergenic |
| AGAAGGTCATAGTCTTGAAG+AGG | 0.642137 | 4.3:-69553747 | None:intergenic |
| GGCCACTCTATATCTACTGA+AGG | 0.646021 | 4.3:-69565836 | None:intergenic |
| GGACTGTTGGAGGTGAAGCA+TGG | 0.647954 | 4.3:+69555256 | MS.gene88038:CDS |
| TACCTTGTATCGTAATACAC+GGG | 0.650881 | 4.3:-69560978 | None:intergenic |
| ATTTGATTAGGATGGATGCT+GGG | 0.651192 | 4.3:+69553949 | MS.gene88038:CDS |
| TTCCTAAGTTCTGCACAAAG+TGG | 0.656952 | 4.3:-69561825 | None:intergenic |
| ACATAAGGGTTGGAGGAGAG+CGG | 0.662635 | 4.3:-69565107 | None:intergenic |
| AATGAACCACTAGGGCGTGG+AGG | 0.667047 | 4.3:-69565974 | None:intergenic |
| AGTGCTTAAGACAGGGACAA+GGG | 0.667307 | 4.3:-69562532 | None:intergenic |
| ATCTGTGATAGGAAACCCTG+TGG | 0.670211 | 4.3:+69565742 | MS.gene88038:CDS |
| AGTCAGGAACCAGATCCGAT+GGG | 0.671346 | 4.3:-69558907 | None:intergenic |
| TAGCCCAACAAATCCAAAAG+GGG | 0.671751 | 4.3:-69566442 | None:intergenic |
| TAGTACCTGAGACTCTGCAA+TGG | 0.674895 | 4.3:-69561886 | None:intergenic |
| ATTGAAGGCTGGATTGACCA+AGG | 0.676540 | 4.3:+69553905 | MS.gene88038:CDS |
| TCTATCAGTAACCTGAACAA+TGG | 0.676581 | 4.3:+69566166 | MS.gene88038:CDS |
| ACTGAAAACAACAGTTGCTG+CGG | 0.682367 | 4.3:+69563919 | MS.gene88038:CDS |
| CACCGGATAATGAACCACTA+GGG | 0.684290 | 4.3:-69565982 | None:intergenic |
| TCCCCGCCCTCTACCCACTG+TGG | 0.700815 | 4.3:-69566356 | None:intergenic |
| TGGATGTTACTTGACCCACA+GGG | 0.701888 | 4.3:-69565757 | None:intergenic |
| GCAGATTAGATGAGTCACCA+GGG | 0.717095 | 4.3:-69555690 | None:intergenic |
| AGACCAGAAGATGCACGAGG+CGG | 0.718681 | 4.3:-69565857 | None:intergenic |
| GACTGATTCTGGAATCCCAG+AGG | 0.719882 | 4.3:+69565556 | MS.gene88038:CDS |
| TCTGTGATAGGAAACCCTGT+GGG | 0.720294 | 4.3:+69565743 | MS.gene88038:CDS |
| TTCGCAACAGAAGCAAACAA+CGG | 0.729982 | 4.3:-69554059 | None:intergenic |
| AGTAAGATAGAAGAGAAGCG+AGG | 0.733585 | 4.3:+69565524 | MS.gene88038:intron |
| AGTGCTAGTCCATGAACACG+TGG | 0.738043 | 4.3:-69563899 | None:intergenic |
| AAGAACCCAAGAGAACTCTG+AGG | 0.741155 | 4.3:-69566196 | None:intergenic |
| GTAAGACCAGAAGATGCACG+AGG | 0.776735 | 4.3:-69565860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 69553657 | 69566465 | 69553657 | ID=MS.gene88038 |
| chr4.3 | mRNA | 69553657 | 69566465 | 69553657 | ID=MS.gene88038.t1;Parent=MS.gene88038 |
| chr4.3 | exon | 69553657 | 69554136 | 69553657 | ID=MS.gene88038.t1.exon1;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69553657 | 69554136 | 69553657 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69555250 | 69555354 | 69555250 | ID=MS.gene88038.t1.exon2;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69555250 | 69555354 | 69555250 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69555622 | 69555729 | 69555622 | ID=MS.gene88038.t1.exon3;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69555622 | 69555729 | 69555622 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69558050 | 69558232 | 69558050 | ID=MS.gene88038.t1.exon4;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69558050 | 69558232 | 69558050 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69558860 | 69558986 | 69558860 | ID=MS.gene88038.t1.exon5;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69558860 | 69558986 | 69558860 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69560753 | 69560814 | 69560753 | ID=MS.gene88038.t1.exon6;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69560753 | 69560814 | 69560753 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69560911 | 69560997 | 69560911 | ID=MS.gene88038.t1.exon7;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69560911 | 69560997 | 69560911 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69561816 | 69561902 | 69561816 | ID=MS.gene88038.t1.exon8;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69561816 | 69561902 | 69561816 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69562498 | 69562611 | 69562498 | ID=MS.gene88038.t1.exon9;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69562498 | 69562611 | 69562498 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69562705 | 69562833 | 69562705 | ID=MS.gene88038.t1.exon10;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69562705 | 69562833 | 69562705 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69563878 | 69563940 | 69563878 | ID=MS.gene88038.t1.exon11;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69563878 | 69563940 | 69563878 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69565003 | 69565164 | 69565003 | ID=MS.gene88038.t1.exon12;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69565003 | 69565164 | 69565003 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69565275 | 69565393 | 69565275 | ID=MS.gene88038.t1.exon13;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69565275 | 69565393 | 69565275 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| chr4.3 | exon | 69565526 | 69566465 | 69565526 | ID=MS.gene88038.t1.exon14;Parent=MS.gene88038.t1 |
| chr4.3 | CDS | 69565526 | 69566465 | 69565526 | ID=cds.MS.gene88038.t1;Parent=MS.gene88038.t1 |
| Gene Sequence |
| Protein sequence |
