AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88045

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88045.t1 MTR_4g031150 98.381 741 12 0 1 741 50 790 0.0 1504
MS.gene88045.t1 MTR_7g109150 73.280 625 163 2 1 623 1 623 0.0 900
MS.gene88045.t1 MTR_1g073840 41.689 746 406 18 5 739 29 756 3.55e-174 518
MS.gene88045.t1 MTR_7g116330 39.519 749 412 16 5 734 34 760 1.70e-163 491
MS.gene88045.t1 MTR_1g079790 38.235 748 430 18 3 734 26 757 8.29e-156 471
MS.gene88045.t1 MTR_1g044210 37.281 743 444 13 5 735 28 760 7.02e-150 456
MS.gene88045.t1 MTR_1g079790 38.704 571 328 11 3 561 26 586 1.25e-119 372
MS.gene88045.t1 MTR_3g085130 28.177 362 213 6 335 655 438 793 2.26e-34 141
MS.gene88045.t1 MTR_3g085130 33.884 121 72 3 612 724 903 1023 9.86e-12 69.3
MS.gene88045.t1 MTR_3g085130 28.453 362 212 7 335 655 228 583 4.06e-34 140
MS.gene88045.t1 MTR_3g085130 33.884 121 72 3 612 724 693 813 1.05e-11 68.9
MS.gene88045.t1 MTR_8g080770 28.883 367 216 8 335 663 383 742 1.18e-33 139
MS.gene88045.t1 MTR_8g080770 31.081 148 85 5 593 724 813 959 2.88e-12 70.9
MS.gene88045.t1 MTR_8g080770 28.883 367 216 8 335 663 274 633 1.54e-33 138
MS.gene88045.t1 MTR_8g080770 34.711 121 68 4 614 724 731 850 3.02e-12 70.9
MS.gene88045.t1 MTR_3g105590 30.117 342 177 9 300 600 331 651 1.28e-32 135
MS.gene88045.t1 MTR_5g022470 30.640 297 178 6 334 605 499 792 2.02e-29 126
MS.gene88045.t1 MTR_5g022470 30.640 297 178 6 334 605 499 792 2.43e-29 125
MS.gene88045.t1 MTR_8g075340 31.321 265 159 3 334 575 461 725 1.40e-28 123
MS.gene88045.t1 MTR_5g097410 28.736 348 203 5 338 646 611 952 4.30e-28 122
MS.gene88045.t1 MTR_8g106150 28.962 366 196 8 338 646 377 735 6.83e-28 121
MS.gene88045.t1 MTR_8g106150 28.962 366 196 8 338 646 134 492 1.08e-27 120
MS.gene88045.t1 MTR_1g013360 38.095 147 88 2 348 493 380 524 5.93e-24 108
MS.gene88045.t1 MTR_1g087140 27.333 300 164 8 324 579 373 662 2.30e-17 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88045.t1 AT1G66340 79.730 740 144 3 2 739 1 736 0.0 1207
MS.gene88045.t1 AT2G40940 70.220 591 176 0 2 592 1 591 0.0 845
MS.gene88045.t1 AT3G23150 38.421 760 411 18 5 732 32 766 7.90e-150 456
MS.gene88045.t1 AT3G04580 38.255 745 437 16 4 733 26 762 3.96e-149 454
MS.gene88045.t1 AT3G04580 38.255 745 437 16 4 733 26 762 3.96e-149 454
MS.gene88045.t1 AT3G23150 44.720 483 248 8 5 480 32 502 4.06e-125 386
MS.gene88045.t1 AT1G04310 39.165 503 281 9 5 492 34 526 2.49e-97 315
MS.gene88045.t1 AT1G04310 39.165 503 281 9 5 492 34 526 2.49e-97 315
MS.gene88045.t1 AT5G10720 33.449 287 165 8 323 590 339 618 4.02e-37 150
MS.gene88045.t1 AT1G27320 26.350 463 292 10 304 728 410 861 1.25e-33 139
MS.gene88045.t1 AT5G35750 29.444 360 190 6 335 646 578 921 6.63e-33 137
MS.gene88045.t1 AT2G01830 28.451 355 204 6 338 646 455 805 2.85e-30 129
MS.gene88045.t1 AT2G01830 28.451 355 204 6 338 646 466 816 3.43e-30 128
MS.gene88045.t1 AT2G01830 28.451 355 204 6 338 646 443 793 3.77e-30 128
MS.gene88045.t1 AT2G01830 28.451 355 204 6 338 646 443 793 3.77e-30 128
MS.gene88045.t1 AT2G01830 28.451 355 204 6 338 646 443 793 3.77e-30 128
MS.gene88045.t1 AT2G01830 28.451 355 204 6 338 646 443 793 3.77e-30 128
MS.gene88045.t1 AT2G17820 31.228 285 169 7 314 575 472 752 2.34e-29 125
MS.gene88045.t1 AT2G47430 28.846 312 176 12 318 592 373 675 7.36e-18 89.0
MS.gene88045.t1 AT4G16250 23.045 243 158 7 330 567 918 1136 6.53e-13 73.2

Find 155 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAACTTGTTTGTATTTC+CGG 0.166586 4.3:+69437477 None:intergenic
TTTGAAAATTAGAAAGATTT+AGG 0.173765 4.3:+69440001 None:intergenic
GGAACACAAAGTCGTCTTTA+TGG 0.212920 4.3:-69437593 MS.gene88045:CDS
CCATGATTTACTAGAGCTTT+AGG 0.235011 4.3:+69438525 None:intergenic
AAGGGACTTCTTATCCATTT+AGG 0.238284 4.3:-69437670 MS.gene88045:CDS
CTGGGGCAGTAGTTGCTATT+CGG 0.247378 4.3:-69440032 MS.gene88045:CDS
CAACACATCTAATAAATTTA+TGG 0.259500 4.3:-69440563 MS.gene88045:CDS
TTGGGCTTGCAATTTGTAAA+AGG 0.274774 4.3:-69438785 MS.gene88045:intron
TTGTGACATCGCATCCTAAA+TGG 0.288123 4.3:+69437656 None:intergenic
CTAATATCCCGGAAGGATTC+AGG 0.288250 4.3:+69439071 None:intergenic
ATCTCATGGAAGGACATATT+TGG 0.289745 4.3:-69438644 MS.gene88045:CDS
AACTAGAAGCTATGCTTTGA+TGG 0.293229 4.3:-69439956 MS.gene88045:CDS
CTGCAGTATTTCCATATAGA+TGG 0.300370 4.3:-69440626 MS.gene88045:CDS
GTTCTTGTCATGGATGATAA+TGG 0.309504 4.3:-69438477 MS.gene88045:CDS
CATGGATCTACAAACATTTC+CGG 0.322079 4.3:-69438507 MS.gene88045:CDS
TTCATCTTCTCAACAGAAAC+AGG 0.336907 4.3:+69437409 None:intergenic
TGAACAAGGACCCATCTATA+TGG 0.340257 4.3:+69440615 None:intergenic
AGCTCTCAAACAGTTCTCTT+TGG 0.340716 4.3:+69437456 None:intergenic
CAAATTCTTCTCAATGTTGT+TGG 0.342418 4.3:-69439152 MS.gene88045:CDS
TTGTGAACTTCTCTTGTATA+CGG 0.348610 4.3:+69437533 None:intergenic
TACCCTCGTCAACGATGTTT+TGG 0.349557 4.3:-69439472 MS.gene88045:CDS
TTGTGGCTCAATACAATTGC+AGG 0.351088 4.3:+69440755 None:intergenic
CGGTAGAACTCTTGGGTTAG+AGG 0.352498 4.3:-69440253 MS.gene88045:CDS
AATCCCGTTGGAAGTGGGCT+TGG 0.357776 4.3:-69438804 MS.gene88045:CDS
CCACTTATAGTTGCTCTTAC+CGG 0.360015 4.3:-69437496 MS.gene88045:CDS
ACGTTATAGGTAAAAGATTC+AGG 0.366131 4.3:-69438900 MS.gene88045:intron
GCAAACTTAGTGAATAACTT+TGG 0.366968 4.3:+69438852 None:intergenic
CTTGGTACTGGTAGGAAATC+AGG 0.368046 4.3:+69439044 None:intergenic
TTGTAAAGCCTGAATCCTTC+CGG 0.368840 4.3:-69439079 MS.gene88045:CDS
ACATTTCGCATCAGATTTGC+CGG 0.371012 4.3:-69439207 MS.gene88045:CDS
TGAGGTCGTAATCTAGCAAC+TGG 0.378008 4.3:+69440072 None:intergenic
TTATGGATGCCGACACGTAC+TGG 0.379232 4.3:-69440222 MS.gene88045:CDS
TGGGGCAGTAGTTGCTATTC+GGG 0.384904 4.3:-69440031 MS.gene88045:CDS
ATTCGTACGCAGGAAGAAAC+TGG 0.390104 4.3:-69440357 MS.gene88045:CDS
ATGCCTGCGTGTTGTTTCTC+TGG 0.392416 4.3:-69437614 MS.gene88045:CDS
GTTGAACTCGGTAGAACTCT+TGG 0.392589 4.3:-69440261 MS.gene88045:CDS
GATGTTTGTACAGGATTAGA+TGG 0.394310 4.3:-69437571 MS.gene88045:CDS
AGATGGGTCCTTGTTCAGTT+TGG 0.394532 4.3:-69440609 MS.gene88045:CDS
GAGGGCAAGGGATCAACTTA+TGG 0.395439 4.3:-69439700 MS.gene88045:CDS
TGCGGAGCTTGATAGAGAAA+TGG 0.397903 4.3:-69440385 MS.gene88045:CDS
TAAGGTAGTTTATGTTCAAT+TGG 0.398943 4.3:+69438552 None:intergenic
TGTTTGAGAGCTGGTGTAAA+TGG 0.400397 4.3:-69437445 MS.gene88045:CDS
GCAGAACCCTGCTGGATATA+CGG 0.401781 4.3:-69440166 MS.gene88045:CDS
ATCCCGTTGGAAGTGGGCTT+GGG 0.404897 4.3:-69438803 MS.gene88045:CDS
GCAGAATGTTGCACTTGATA+TGG 0.405382 4.3:-69439676 MS.gene88045:CDS
CAACAGGTTTAATCAAGTTA+AGG 0.407192 4.3:+69439258 None:intergenic
AAGAAACTGGTCGACATGTT+AGG 0.407386 4.3:-69440344 MS.gene88045:CDS
TGCACTCTCTTCATTGATGC+AGG 0.414560 4.3:-69439562 MS.gene88045:CDS
TGTAAAGCCTGAATCCTTCC+GGG 0.416876 4.3:-69439078 MS.gene88045:CDS
TGGATTGAAAGCGAAGGTAT+TGG 0.423019 4.3:-69438624 MS.gene88045:CDS
CGGCCTCAAGGTTCTTGTCA+TGG 0.425638 4.3:-69438487 MS.gene88045:CDS
TTATGTTCAATTGGACGGTC+CGG 0.429284 4.3:+69438561 None:intergenic
TTGATCACAGGAAAATTAAT+AGG 0.429929 4.3:+69440141 None:intergenic
GTCTTTATGGATGTTTGTAC+AGG 0.430729 4.3:-69437580 MS.gene88045:CDS
TTCTTGTCATGGATGATAAT+GGG 0.431607 4.3:-69438476 MS.gene88045:intron
CATGCTGCAAAATACATGCC+TGG 0.434848 4.3:-69440051 MS.gene88045:CDS
TTGAACTCGGTAGAACTCTT+GGG 0.435191 4.3:-69440260 MS.gene88045:CDS
GAATAATATGTACAAGCATA+AGG 0.435805 4.3:+69440457 None:intergenic
ACTAGAGCTTTAGGTTTGTA+AGG 0.436633 4.3:+69438534 None:intergenic
GACTGCTGAGCAACGTCTAA+TGG 0.441775 4.3:-69439529 MS.gene88045:CDS
GGTTAGAGGAATGTGCGTTA+TGG 0.446709 4.3:-69440239 MS.gene88045:CDS
TAGGTAAAAGATTCAGGATC+AGG 0.449935 4.3:-69438894 MS.gene88045:CDS
ACTTGTAATGCAGGGTGAGC+AGG 0.452723 4.3:-69437702 MS.gene88045:intron
CCTAAAGCTCTAGTAAATCA+TGG 0.454091 4.3:-69438525 MS.gene88045:CDS
GGTCGAGGTAGTTGCTGATC+AGG 0.455884 4.3:-69439878 MS.gene88045:intron
GCTGTTAAGTTCACAAAAGA+AGG 0.457297 4.3:-69439125 MS.gene88045:CDS
AGCCCAAGCCCACTTCCAAC+GGG 0.459934 4.3:+69438801 None:intergenic
TATGTTCAATTGGACGGTCC+GGG 0.474743 4.3:+69438562 None:intergenic
TGAAGAAATCTGATATGTAT+TGG 0.476642 4.3:+69440703 None:intergenic
CAAACTTAGTGAATAACTTT+GGG 0.476701 4.3:+69438853 None:intergenic
GGTGAGCAGGTCAGCGACAA+AGG 0.476867 4.3:-69437689 MS.gene88045:CDS
ATGCTGCAAAATACATGCCT+GGG 0.488762 4.3:-69440050 MS.gene88045:CDS
TTCATCAATAAATCATCTGC+TGG 0.499714 4.3:+69440729 None:intergenic
GCGGAGCTTGATAGAGAAAT+GGG 0.500423 4.3:-69440384 MS.gene88045:CDS
AATAATATGTACAAGCATAA+GGG 0.501867 4.3:+69440458 None:intergenic
TTGAGACAGCAGAACCCTGC+TGG 0.507042 4.3:-69440174 MS.gene88045:CDS
GATCTTTCACGGCTTGAAGA+TGG 0.509985 4.3:-69439450 MS.gene88045:CDS
GGTGCCTTCATAGTTCTATG+TGG 0.510808 4.3:-69440588 MS.gene88045:CDS
CCTCTCTAAACAACGAATGA+AGG 0.512451 4.3:+69439397 None:intergenic
CCTGTACTCGCAAATAAAAG+TGG 0.513892 4.3:+69439015 None:intergenic
AAGCCCAAGCCCACTTCCAA+CGG 0.521714 4.3:+69438800 None:intergenic
CATTGTAAAACTCGGAATCC+CGG 0.521822 4.3:-69438580 MS.gene88045:CDS
TAGAAGAGTCGATGAGGGCA+AGG 0.528388 4.3:-69439713 MS.gene88045:CDS
CCGGTAAGAGCAACTATAAG+TGG 0.528549 4.3:+69437496 None:intergenic
GTAGTTTATGTTCAATTGGA+CGG 0.529052 4.3:+69438556 None:intergenic
AAGTGGCTATCACTTGGTAC+TGG 0.534422 4.3:+69439032 None:intergenic
ATAGGTACCGTATATCCAGC+AGG 0.535139 4.3:+69440159 None:intergenic
GATTTGCCGGTGCATGCGAT+TGG 0.537407 4.3:-69439194 MS.gene88045:CDS
AATAACTTTGGGATGTCTTG+TGG 0.537838 4.3:+69438864 None:intergenic
GAAAGCGAAGGTATTGGTAA+AGG 0.545327 4.3:-69438618 MS.gene88045:CDS
AAATAAAAGTGGCTATCACT+TGG 0.546436 4.3:+69439026 None:intergenic
ATTAGATGGTTATGAATTAG+CGG 0.546628 4.3:-69437557 MS.gene88045:CDS
GTGAGCAGGTCAGCGACAAA+GGG 0.547570 4.3:-69437688 MS.gene88045:CDS
TCATCGCCAATCGCATGCAC+CGG 0.548370 4.3:+69439188 None:intergenic
AAATCATCTGCTGGCCATTG+TGG 0.550408 4.3:+69440738 None:intergenic
CTAAATACGTGGTTGATCAC+AGG 0.551611 4.3:+69440129 None:intergenic
TACAAACATTTCCGGCCTCA+AGG 0.553478 4.3:-69438499 MS.gene88045:CDS
TATGGATGCCGACACGTACT+GGG 0.553493 4.3:-69440221 MS.gene88045:CDS
TGCAGTATTTCCATATAGAT+GGG 0.553503 4.3:-69440625 MS.gene88045:CDS
GCCACTTTCATTGTAAAACT+CGG 0.554108 4.3:-69438588 MS.gene88045:CDS
AAAGAGAACTGTTTGAGAGC+TGG 0.562595 4.3:-69437454 MS.gene88045:CDS
ACAAAGTAGATAAGCTCGAG+CGG 0.563726 4.3:+69440657 None:intergenic
CCTTCATTCGTTGTTTAGAG+AGG 0.564263 4.3:-69439397 MS.gene88045:intron
AATCAGGAAATCTAATATCC+CGG 0.566463 4.3:+69439060 None:intergenic
TAGCTTCTAGTTGAAACCTC+AGG 0.568702 4.3:+69439967 None:intergenic
CGAATAGCAACTACTGCCCC+AGG 0.569883 4.3:+69440033 None:intergenic
TAACAGAACTCTTGGAGCGT+CGG 0.575513 4.3:-69437378 MS.gene88045:CDS
TGCTCCACATAGAACTATGA+AGG 0.577986 4.3:+69440584 None:intergenic
TGAAGGCACCAAACTGAACA+AGG 0.580571 4.3:+69440601 None:intergenic
CAAAGTAGATAAGCTCGAGC+GGG 0.583205 4.3:+69440658 None:intergenic
TACGACAGCAGTTAAAACCT+TGG 0.584957 4.3:+69440494 None:intergenic
CTTTACAACAACCACAGCGA+TGG 0.589457 4.3:+69439094 None:intergenic
AAAACGACCCTTGTTGAACT+CGG 0.590308 4.3:-69440273 MS.gene88045:CDS
GAGCAGGTTTGTGAATCTCA+TGG 0.590609 4.3:-69438658 MS.gene88045:intron
AAATTAGAAAGATTTAGGAG+AGG 0.591308 4.3:+69440006 None:intergenic
GCATGTACATGAGTTAGAGC+TGG 0.591900 4.3:-69439899 MS.gene88045:CDS
GACAGCAGTTAAAACCTTGG+CGG 0.594497 4.3:+69440497 None:intergenic
CATGACAAGAACCTTGAGGC+CGG 0.595442 4.3:+69438488 None:intergenic
ATGTACAAGCATAAGGGCAG+TGG 0.596476 4.3:+69440464 None:intergenic
GGTTCTTGTATGAATTGTGA+AGG 0.598228 4.3:+69440539 None:intergenic
CACGGTTGCTACTAAATACG+TGG 0.605909 4.3:+69440118 None:intergenic
GATGCCGACACGTACTGGGT+TGG 0.605973 4.3:-69440217 MS.gene88045:CDS
AATTGTAATGACCACCGCCA+AGG 0.606041 4.3:-69440511 MS.gene88045:CDS
AATGGGCTTGATTCGTACGC+AGG 0.607550 4.3:-69440367 MS.gene88045:CDS
AGCAGTTAAAACCTTGGCGG+TGG 0.608870 4.3:+69440500 None:intergenic
AGGAAATCTAATATCCCGGA+AGG 0.610494 4.3:+69439064 None:intergenic
GATCCAAAACATCGTTGACG+AGG 0.611768 4.3:+69439469 None:intergenic
CACTGTCTAGCACTATCAGA+TGG 0.612788 4.3:+69439922 None:intergenic
GGTGGTCATTACAATTGCCA+CGG 0.613246 4.3:+69440518 None:intergenic
GAGTTCTACCGAGTTCAACA+AGG 0.619729 4.3:+69440265 None:intergenic
AGGTTTGTGAATCTCATGGA+AGG 0.621756 4.3:-69438654 MS.gene88045:CDS
AGAAGAGTCGATGAGGGCAA+GGG 0.622079 4.3:-69439712 MS.gene88045:CDS
CATATTTGGATTGAAAGCGA+AGG 0.630241 4.3:-69438630 MS.gene88045:CDS
GTTTCTGTTGAGAAGATGAA+AGG 0.632532 4.3:-69437406 MS.gene88045:CDS
GCAATTGTATTGAGCCACAA+TGG 0.634157 4.3:-69440752 MS.gene88045:CDS
TGCTGAGCAACGTCTAATGG+TGG 0.634295 4.3:-69439526 MS.gene88045:CDS
AGTGCAATAATTGCATGCAT+CGG 0.638531 4.3:+69439579 None:intergenic
AGCTCCAACCCAGTACGTGT+CGG 0.649105 4.3:+69440213 None:intergenic
TCAAATATATGATTGGCCTG+AGG 0.650243 4.3:-69439983 MS.gene88045:CDS
CAATCTTAGAAGAGTCGATG+AGG 0.659708 4.3:-69439719 MS.gene88045:CDS
GCGGGATCGAGAAATAAGCA+AGG 0.660212 4.3:+69440676 None:intergenic
TAGGTACCGTATATCCAGCA+GGG 0.660703 4.3:+69440160 None:intergenic
ATCCAAAACATCGTTGACGA+GGG 0.663430 4.3:+69439470 None:intergenic
ACATGAGTTAGAGCTGGTCG+AGG 0.664742 4.3:-69439893 MS.gene88045:CDS
CGGGATCGAGAAATAAGCAA+GGG 0.666665 4.3:+69440677 None:intergenic
AATCTTAGAAGAGTCGATGA+GGG 0.669206 4.3:-69439718 MS.gene88045:CDS
AGGCAGCATTTCCATCGCTG+TGG 0.669524 4.3:-69439105 MS.gene88045:CDS
GGCTATCACTTGGTACTGGT+AGG 0.678294 4.3:+69439036 None:intergenic
AGTTCTACCGAGTTCAACAA+GGG 0.685205 4.3:+69440266 None:intergenic
TGCTGCAAAATACATGCCTG+GGG 0.686693 4.3:-69440049 MS.gene88045:CDS
CACAATTCATACAAGAACCG+TGG 0.691719 4.3:-69440535 MS.gene88045:CDS
GAGGTCGTAATCTAGCAACT+GGG 0.705400 4.3:+69440073 None:intergenic
CATCCATGACAAGAACCTTG+AGG 0.710914 4.3:+69438484 None:intergenic
CATCTGATAGTGCTAGACAG+TGG 0.733689 4.3:-69439921 MS.gene88045:CDS
GTTCCAGAGAAACAACACGC+AGG 0.758519 4.3:+69437611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTATAAATTTAAACTTTT+AGG - chr4.3:69440194-69440213 MS.gene88045:CDS 10.0%
!! AAATTGTCAAATAAAAATTC+AGG + chr4.3:69440228-69440247 None:intergenic 15.0%
!! TTTGAAAATTAGAAAGATTT+AGG + chr4.3:69438124-69438143 None:intergenic 15.0%
!!! ATTATGTATATTTTCTTTTC+TGG + chr4.3:69440278-69440297 None:intergenic 15.0%
!!! CTAATTTTCAAATATATGAT+TGG - chr4.3:69438132-69438151 MS.gene88045:intron 15.0%
!!! TTTTATAGAAAAGTAAACTT+AGG - chr4.3:69439727-69439746 MS.gene88045:CDS 15.0%
!!! TTTTTAAAACATTGCTTTTA+GGG + chr4.3:69439909-69439928 None:intergenic 15.0%
!! AAGTAAATCTATATACATCA+AGG - chr4.3:69439853-69439872 MS.gene88045:intron 20.0%
!! AATAATATGTACAAGCATAA+GGG + chr4.3:69437667-69437686 None:intergenic 20.0%
!! CAACACATCTAATAAATTTA+TGG - chr4.3:69437559-69437578 MS.gene88045:CDS 20.0%
!! TGATGTATATAGATTTACTT+TGG + chr4.3:69439853-69439872 None:intergenic 20.0%
!!! AAATTTAAACTTTTAGGTGA+AGG - chr4.3:69440200-69440219 MS.gene88045:CDS 20.0%
!!! ACTAATATAGTTGAACTTTT+CGG + chr4.3:69438770-69438789 None:intergenic 20.0%
!!! AGAATTATTTTTGAAGAACA+AGG - chr4.3:69437713-69437732 MS.gene88045:intron 20.0%
!!! AGTTTTAACACTTAATAGAT+CGG + chr4.3:69437691-69437710 None:intergenic 20.0%
!!! GTTTTTAAAACATTGCTTTT+AGG + chr4.3:69439910-69439929 None:intergenic 20.0%
!!! TAATTTGTTCTCTTCAATAT+TGG - chr4.3:69439397-69439416 MS.gene88045:intron 20.0%
!!! TTACTAATTTTCTTCTGTTT+TGG - chr4.3:69439146-69439165 MS.gene88045:CDS 20.0%
! AAATTAGAAAGATTTAGGAG+AGG + chr4.3:69438119-69438138 None:intergenic 25.0%
! ACAAAGGAAACTGAATAAAA+TGG + chr4.3:69438281-69438300 None:intergenic 25.0%
! ACTAGAAATATTCCTTGATA+TGG + chr4.3:69440178-69440197 None:intergenic 25.0%
! ATGCTTTCAAGAATATCATT+AGG + chr4.3:69439787-69439806 None:intergenic 25.0%
! ATTAGATGGTTATGAATTAG+CGG - chr4.3:69440565-69440584 MS.gene88045:CDS 25.0%
! CAAACTTAGTGAATAACTTT+GGG + chr4.3:69439272-69439291 None:intergenic 25.0%
! GAATAATATGTACAAGCATA+AGG + chr4.3:69437668-69437687 None:intergenic 25.0%
! TAAGGTAGTTTATGTTCAAT+TGG + chr4.3:69439573-69439592 None:intergenic 25.0%
! TGAAGAAATCTGATATGTAT+TGG + chr4.3:69437422-69437441 None:intergenic 25.0%
! TTCTTTAAACAGTTAGAACA+CGG + chr4.3:69439994-69440013 None:intergenic 25.0%
! TTGATCACAGGAAAATTAAT+AGG + chr4.3:69437984-69438003 None:intergenic 25.0%
!! CTAATATAGTTGAACTTTTC+GGG + chr4.3:69438769-69438788 None:intergenic 25.0%
!! TAAGTCTTTTCATAGTAAGT+GGG + chr4.3:69440124-69440143 None:intergenic 25.0%
!!! GATTTTTTGTTGCTAATGTT+TGG + chr4.3:69439302-69439321 None:intergenic 25.0%
!!! GTTTTAACACTTAATAGATC+GGG + chr4.3:69437690-69437709 None:intergenic 25.0%
!!! TATTTTGTTTTCCACGTTAT+AGG - chr4.3:69439209-69439228 MS.gene88045:CDS 25.0%
AAATAAAAGTGGCTATCACT+TGG + chr4.3:69439099-69439118 None:intergenic 30.0%
AAATTTCACAACTGAAGGTA+CGG + chr4.3:69439690-69439709 None:intergenic 30.0%
AAGTCAGATGAATTGTTTAG+TGG - chr4.3:69440341-69440360 MS.gene88045:CDS 30.0%
AATCAGGAAATCTAATATCC+CGG + chr4.3:69439065-69439084 None:intergenic 30.0%
AATGCTGTTCACAATTTAAC+AGG - chr4.3:69440026-69440045 MS.gene88045:CDS 30.0%
ACGTTATAGGTAAAAGATTC+AGG - chr4.3:69439222-69439241 MS.gene88045:CDS 30.0%
AGGTCCATGTAAAAGAATAT+CGG + chr4.3:69438345-69438364 None:intergenic 30.0%
CAAATTCTTCTCAATGTTGT+TGG - chr4.3:69438970-69438989 MS.gene88045:intron 30.0%
CAACAGGTTTAATCAAGTTA+AGG + chr4.3:69438867-69438886 None:intergenic 30.0%
CTTACTATGAAAAGACTTAC+TGG - chr4.3:69440125-69440144 MS.gene88045:CDS 30.0%
GCAAACTTAGTGAATAACTT+TGG + chr4.3:69439273-69439292 None:intergenic 30.0%
GTAACAAATTTCACAACTGA+AGG + chr4.3:69439695-69439714 None:intergenic 30.0%
GTAGTTTATGTTCAATTGGA+CGG + chr4.3:69439569-69439588 None:intergenic 30.0%
TGCAGTATTTCCATATAGAT+GGG - chr4.3:69437497-69437516 MS.gene88045:CDS 30.0%
TGTAAAGAAATACGCTACAA+AGG + chr4.3:69438297-69438316 None:intergenic 30.0%
TTCATCAATAAATCATCTGC+TGG + chr4.3:69437396-69437415 None:intergenic 30.0%
TTCTTGTCATGGATGATAAT+GGG - chr4.3:69439646-69439665 MS.gene88045:CDS 30.0%
TTGTGAACTTCTCTTGTATA+CGG + chr4.3:69440592-69440611 None:intergenic 30.0%
! AAGTCTTTTCATAGTAAGTG+GGG + chr4.3:69440123-69440142 None:intergenic 30.0%
! CAAGCTTTAATACCATATCA+AGG - chr4.3:69440163-69440182 MS.gene88045:CDS 30.0%
! GTAAGTCTTTTCATAGTAAG+TGG + chr4.3:69440125-69440144 None:intergenic 30.0%
! TGAATCTTTTACCTATAACG+TGG + chr4.3:69439223-69439242 None:intergenic 30.0%
!! GTGAAATTTGTTACTATGTC+TGG - chr4.3:69439701-69439720 MS.gene88045:CDS 30.0%
!!! TCGATGAAATTTTAACTGCA+CGG + chr4.3:69438025-69438044 None:intergenic 30.0%
AAAACCATAATGTCCCATCA+AGG + chr4.3:69440080-69440099 None:intergenic 35.0%
AACTAGAAGCTATGCTTTGA+TGG - chr4.3:69438166-69438185 MS.gene88045:intron 35.0%
AAGGACTATGAAAAGCAAAC+CGG + chr4.3:69440061-69440080 None:intergenic 35.0%
AAGGGACTTCTTATCCATTT+AGG - chr4.3:69440452-69440471 MS.gene88045:CDS 35.0%
AATCTTAGAAGAGTCGATGA+GGG - chr4.3:69438404-69438423 MS.gene88045:intron 35.0%
ACTATGAAAAGACTTACTGG+TGG - chr4.3:69440128-69440147 MS.gene88045:CDS 35.0%
AGTGCAATAATTGCATGCAT+CGG + chr4.3:69438546-69438565 None:intergenic 35.0%
ATCAGTTATGAGACAAGCAA+GGG + chr4.3:69440394-69440413 None:intergenic 35.0%
ATCTCATGGAAGGACATATT+TGG - chr4.3:69439478-69439497 MS.gene88045:CDS 35.0%
ATGGTGAAACTTGTAATGCA+GGG - chr4.3:69440412-69440431 MS.gene88045:CDS 35.0%
CATATTTGGATTGAAAGCGA+AGG - chr4.3:69439492-69439511 MS.gene88045:CDS 35.0%
CATGGATCTACAAACATTTC+CGG - chr4.3:69439615-69439634 MS.gene88045:CDS 35.0%
CCATGATTTACTAGAGCTTT+AGG + chr4.3:69439600-69439619 None:intergenic 35.0%
CTCAAAGATCATAAGCTACT+AGG + chr4.3:69438796-69438815 None:intergenic 35.0%
CTGCAGTATTTCCATATAGA+TGG - chr4.3:69437496-69437515 MS.gene88045:CDS 35.0%
CTTCTACTTGCAATCTAACT+TGG - chr4.3:69440318-69440337 MS.gene88045:CDS 35.0%
GATGTTTGTACAGGATTAGA+TGG - chr4.3:69440551-69440570 MS.gene88045:CDS 35.0%
GCTGTTAAGTTCACAAAAGA+AGG - chr4.3:69438997-69439016 MS.gene88045:intron 35.0%
GGTTCTTGTATGAATTGTGA+AGG + chr4.3:69437586-69437605 None:intergenic 35.0%
GTCTTTATGGATGTTTGTAC+AGG - chr4.3:69440542-69440561 MS.gene88045:CDS 35.0%
GTTCTTGTCATGGATGATAA+TGG - chr4.3:69439645-69439664 MS.gene88045:CDS 35.0%
GTTTCTGTTGAGAAGATGAA+AGG - chr4.3:69440716-69440735 MS.gene88045:CDS 35.0%
TAGGTAAAAGATTCAGGATC+AGG - chr4.3:69439228-69439247 MS.gene88045:CDS 35.0%
TGCAATAAACCACTCAAACT+GGG - chr4.3:69439962-69439981 MS.gene88045:CDS 35.0%
TGCTCACAGATTAAAGATAC+CGG + chr4.3:69439449-69439468 None:intergenic 35.0%
TTAGCAACAAAAAATCCCGT+TGG - chr4.3:69439306-69439325 MS.gene88045:intron 35.0%
TTCATCTTCTCAACAGAAAC+AGG + chr4.3:69440716-69440735 None:intergenic 35.0%
TTGGGCTTGCAATTTGTAAA+AGG - chr4.3:69439337-69439356 MS.gene88045:intron 35.0%
! AGCTTTTTAACAGATGCAAC+AGG + chr4.3:69438883-69438902 None:intergenic 35.0%
! CCTAAAGCTCTAGTAAATCA+TGG - chr4.3:69439597-69439616 MS.gene88045:CDS 35.0%
! GCCACTTTCATTGTAAAACT+CGG - chr4.3:69439534-69439553 MS.gene88045:CDS 35.0%
! GGTCAACTTGTTTGTATTTC+CGG + chr4.3:69440648-69440667 None:intergenic 35.0%
! TCCGAGTTTTACAATGAAAG+TGG + chr4.3:69439538-69439557 None:intergenic 35.0%
! TCGACCGATATTCTTTTACA+TGG - chr4.3:69438338-69438357 MS.gene88045:intron 35.0%
! TGCTTTTCATAGTCCTTGAT+GGG - chr4.3:69440064-69440083 MS.gene88045:CDS 35.0%
!! AATAACTTTGGGATGTCTTG+TGG + chr4.3:69439261-69439280 None:intergenic 35.0%
!! ACGATGTTTTGGATCTTTCA+CGG - chr4.3:69438661-69438680 MS.gene88045:intron 35.0%
!! ACTAGAGCTTTAGGTTTGTA+AGG + chr4.3:69439591-69439610 None:intergenic 35.0%
!! AGACTTGTTATTCTGATTGC+AGG - chr4.3:69438840-69438859 MS.gene88045:CDS 35.0%
!! AGTTGAACTTTTCGGGATTT+AGG + chr4.3:69438762-69438781 None:intergenic 35.0%
!! ATTTTTGAAGAACAAGGCTG+CGG - chr4.3:69437719-69437738 MS.gene88045:intron 35.0%
!! GATTTTCTATTGATTGCGTC+CGG - chr4.3:69439427-69439446 MS.gene88045:CDS 35.0%
!! TCAAATATATGATTGGCCTG+AGG - chr4.3:69438139-69438158 MS.gene88045:intron 35.0%
!! TTGCTTTTCATAGTCCTTGA+TGG - chr4.3:69440063-69440082 MS.gene88045:CDS 35.0%
!!! AGGTGTTTTAACAGAACTCT+TGG - chr4.3:69440736-69440755 MS.gene88045:CDS 35.0%
AAAACGACCCTTGTTGAACT+CGG - chr4.3:69437849-69437868 MS.gene88045:intron 40.0%
AAAGACTTACTGGTGGTTGT+TGG - chr4.3:69440135-69440154 MS.gene88045:CDS 40.0%
AAAGAGAACTGTTTGAGAGC+TGG - chr4.3:69440668-69440687 MS.gene88045:CDS 40.0%
AAGAAACTGGTCGACATGTT+AGG - chr4.3:69437778-69437797 MS.gene88045:intron 40.0%
ACAAAAAATCCCGTTGGAAG+TGG - chr4.3:69439312-69439331 MS.gene88045:intron 40.0%
ACAAAGTAGATAAGCTCGAG+CGG + chr4.3:69437468-69437487 None:intergenic 40.0%
ACATTTCGCATCAGATTTGC+CGG - chr4.3:69438915-69438934 MS.gene88045:intron 40.0%
ACTGAATCAGAGAGACATCT+TGG - chr4.3:69439928-69439947 MS.gene88045:CDS 40.0%
AGCTCTCAAACAGTTCTCTT+TGG + chr4.3:69440669-69440688 None:intergenic 40.0%
AGGAAATCTAATATCCCGGA+AGG + chr4.3:69439061-69439080 None:intergenic 40.0%
AGGTTTGTGAATCTCATGGA+AGG - chr4.3:69439468-69439487 MS.gene88045:CDS 40.0%
AGTTCTACCGAGTTCAACAA+GGG + chr4.3:69437859-69437878 None:intergenic 40.0%
ATCATTAGGACCCAAGAAGT+CGG + chr4.3:69439773-69439792 None:intergenic 40.0%
ATCCAAAACATCGTTGACGA+GGG + chr4.3:69438655-69438674 None:intergenic 40.0%
ATGCTGCAAAATACATGCCT+GGG - chr4.3:69438072-69438091 MS.gene88045:intron 40.0%
ATTTAACAGGCTGAACTGTC+CGG - chr4.3:69440039-69440058 MS.gene88045:CDS 40.0%
CAAAAAATCCCGTTGGAAGT+GGG - chr4.3:69439313-69439332 MS.gene88045:intron 40.0%
CAATCTTAGAAGAGTCGATG+AGG - chr4.3:69438403-69438422 MS.gene88045:intron 40.0%
CACAATTCATACAAGAACCG+TGG - chr4.3:69437587-69437606 MS.gene88045:CDS 40.0%
CATCAGTTATGAGACAAGCA+AGG + chr4.3:69440395-69440414 None:intergenic 40.0%
CATTGTAAAACTCGGAATCC+CGG - chr4.3:69439542-69439561 MS.gene88045:CDS 40.0%
CCACTTATAGTTGCTCTTAC+CGG - chr4.3:69440626-69440645 MS.gene88045:CDS 40.0%
CCTCTCTAAACAACGAATGA+AGG + chr4.3:69438728-69438747 None:intergenic 40.0%
CCTGTACTCGCAAATAAAAG+TGG + chr4.3:69439110-69439129 None:intergenic 40.0%
CCTTCATTCGTTGTTTAGAG+AGG - chr4.3:69438725-69438744 MS.gene88045:intron 40.0%
CGTCTGTTATCTGATTTCGA+AGG - chr4.3:69439179-69439198 MS.gene88045:CDS 40.0%
CTAAATACGTGGTTGATCAC+AGG + chr4.3:69437996-69438015 None:intergenic 40.0%
CTGCAATAAACCACTCAAAC+TGG - chr4.3:69439961-69439980 MS.gene88045:CDS 40.0%
CTGTTATCTGATTTCGAAGG+TGG - chr4.3:69439182-69439201 MS.gene88045:CDS 40.0%
CTTGCTTGTCTCATAACTGA+TGG - chr4.3:69440393-69440412 MS.gene88045:CDS 40.0%
GATGGTGAAACTTGTAATGC+AGG - chr4.3:69440411-69440430 MS.gene88045:CDS 40.0%
GCAATTGTATTGAGCCACAA+TGG - chr4.3:69437370-69437389 MS.gene88045:CDS 40.0%
GCAGAATGTTGCACTTGATA+TGG - chr4.3:69438446-69438465 MS.gene88045:intron 40.0%
GGAACACAAAGTCGTCTTTA+TGG - chr4.3:69440529-69440548 MS.gene88045:CDS 40.0%
GGTATCTTTAATCTGTGAGC+AGG - chr4.3:69439448-69439467 MS.gene88045:CDS 40.0%
TACGACAGCAGTTAAAACCT+TGG + chr4.3:69437631-69437650 None:intergenic 40.0%
TAGTCCTTGATGGGACATTA+TGG - chr4.3:69440073-69440092 MS.gene88045:CDS 40.0%
TGAACAAGGACCCATCTATA+TGG + chr4.3:69437510-69437529 None:intergenic 40.0%
TGCTCCACATAGAACTATGA+AGG + chr4.3:69437541-69437560 None:intergenic 40.0%
TGTTTGAGAGCTGGTGTAAA+TGG - chr4.3:69440677-69440696 MS.gene88045:CDS 40.0%
TTATGTTCAATTGGACGGTC+CGG + chr4.3:69439564-69439583 None:intergenic 40.0%
TTGAACTCGGTAGAACTCTT+GGG - chr4.3:69437862-69437881 MS.gene88045:intron 40.0%
TTGTAAAGCCTGAATCCTTC+CGG - chr4.3:69439043-69439062 MS.gene88045:CDS 40.0%
TTGTGACATCGCATCCTAAA+TGG + chr4.3:69440469-69440488 None:intergenic 40.0%
TTGTGGCTCAATACAATTGC+AGG + chr4.3:69437370-69437389 None:intergenic 40.0%
! TAGCTTCTAGTTGAAACCTC+AGG + chr4.3:69438158-69438177 None:intergenic 40.0%
! TCATGCTCGCAATGACTTTT+TGG - chr4.3:69438494-69438513 MS.gene88045:CDS 40.0%
! TGGATTGAAAGCGAAGGTAT+TGG - chr4.3:69439498-69439517 MS.gene88045:CDS 40.0%
!! CCACTTTTATTTGCGAGTAC+AGG - chr4.3:69439107-69439126 MS.gene88045:CDS 40.0%
!! GAAAGCGAAGGTATTGGTAA+AGG - chr4.3:69439504-69439523 MS.gene88045:CDS 40.0%
AAATCATCTGCTGGCCATTG+TGG + chr4.3:69437387-69437406 None:intergenic 45.0%
AAGTGGCTATCACTTGGTAC+TGG + chr4.3:69439093-69439112 None:intergenic 45.0%
AATTGTAATGACCACCGCCA+AGG - chr4.3:69437611-69437630 MS.gene88045:CDS 45.0%
ACTTTAAGCCCCGACTTCTT+GGG - chr4.3:69439760-69439779 MS.gene88045:intron 45.0%
AGATGGGTCCTTGTTCAGTT+TGG - chr4.3:69437513-69437532 MS.gene88045:CDS 45.0%
ATGTACAAGCATAAGGGCAG+TGG + chr4.3:69437661-69437680 None:intergenic 45.0%
ATTCGTACGCAGGAAGAAAC+TGG - chr4.3:69437765-69437784 MS.gene88045:intron 45.0%
CAAAGTAGATAAGCTCGAGC+GGG + chr4.3:69437467-69437486 None:intergenic 45.0%
CACGGTTGCTACTAAATACG+TGG + chr4.3:69438007-69438026 None:intergenic 45.0%
CACTGTCTAGCACTATCAGA+TGG + chr4.3:69438203-69438222 None:intergenic 45.0%
CAGCTACCTGGTGTAAAAAC+AGG + chr4.3:69438365-69438384 None:intergenic 45.0%
CATCCATGACAAGAACCTTG+AGG + chr4.3:69439641-69439660 None:intergenic 45.0%
CATGCTGCAAAATACATGCC+TGG - chr4.3:69438071-69438090 MS.gene88045:intron 45.0%
CCGGTAAGAGCAACTATAAG+TGG + chr4.3:69440629-69440648 None:intergenic 45.0%
CGGGATCGAGAAATAAGCAA+GGG + chr4.3:69437448-69437467 None:intergenic 45.0%
CTAATATCCCGGAAGGATTC+AGG + chr4.3:69439054-69439073 None:intergenic 45.0%
CTTTACAACAACCACAGCGA+TGG + chr4.3:69439031-69439050 None:intergenic 45.0%
GACAGCAGTTAAAACCTTGG+CGG + chr4.3:69437628-69437647 None:intergenic 45.0%
GAGCAGGTTTGTGAATCTCA+TGG - chr4.3:69439464-69439483 MS.gene88045:CDS 45.0%
GAGGTCGTAATCTAGCAACT+GGG + chr4.3:69438052-69438071 None:intergenic 45.0%
GAGTTCTACCGAGTTCAACA+AGG + chr4.3:69437860-69437879 None:intergenic 45.0%
GATCCAAAACATCGTTGACG+AGG + chr4.3:69438656-69438675 None:intergenic 45.0%
GATCTTTCACGGCTTGAAGA+TGG - chr4.3:69438672-69438691 MS.gene88045:intron 45.0%
GCATGTACATGAGTTAGAGC+TGG - chr4.3:69438223-69438242 MS.gene88045:intron 45.0%
GCGGAGCTTGATAGAGAAAT+GGG - chr4.3:69437738-69437757 MS.gene88045:intron 45.0%
GGTGGTCATTACAATTGCCA+CGG + chr4.3:69437607-69437626 None:intergenic 45.0%
GGTTAGAGGAATGTGCGTTA+TGG - chr4.3:69437883-69437902 MS.gene88045:intron 45.0%
GTTGAACTCGGTAGAACTCT+TGG - chr4.3:69437861-69437880 MS.gene88045:intron 45.0%
TAACAGAACTCTTGGAGCGT+CGG - chr4.3:69440744-69440763 MS.gene88045:CDS 45.0%
TACAAACATTTCCGGCCTCA+AGG - chr4.3:69439623-69439642 MS.gene88045:CDS 45.0%
TACTTTAAGCCCCGACTTCT+TGG - chr4.3:69439759-69439778 MS.gene88045:intron 45.0%
TATGTTCAATTGGACGGTCC+GGG + chr4.3:69439563-69439582 None:intergenic 45.0%
TCAGAGAGACATCTTGGTCA+TGG - chr4.3:69439934-69439953 MS.gene88045:CDS 45.0%
TCATTAGGACCCAAGAAGTC+GGG + chr4.3:69439772-69439791 None:intergenic 45.0%
TGAGGTCGTAATCTAGCAAC+TGG + chr4.3:69438053-69438072 None:intergenic 45.0%
TGCACTCTCTTCATTGATGC+AGG - chr4.3:69438560-69438579 MS.gene88045:CDS 45.0%
TGCGGAGCTTGATAGAGAAA+TGG - chr4.3:69437737-69437756 MS.gene88045:intron 45.0%
TGCTGCAAAATACATGCCTG+GGG - chr4.3:69438073-69438092 MS.gene88045:intron 45.0%
TGTAAAGCCTGAATCCTTCC+GGG - chr4.3:69439044-69439063 MS.gene88045:CDS 45.0%
! ATAGGTACCGTATATCCAGC+AGG + chr4.3:69437966-69437985 None:intergenic 45.0%
! CATCTGATAGTGCTAGACAG+TGG - chr4.3:69438201-69438220 MS.gene88045:intron 45.0%
! GGCATGTATTTTGCAGCATG+AGG + chr4.3:69438071-69438090 None:intergenic 45.0%
! GGTGCCTTCATAGTTCTATG+TGG - chr4.3:69437534-69437553 MS.gene88045:CDS 45.0%
! TACCCTCGTCAACGATGTTT+TGG - chr4.3:69438650-69438669 MS.gene88045:CDS 45.0%
! TAGGTACCGTATATCCAGCA+GGG + chr4.3:69437965-69437984 None:intergenic 45.0%
!! CTTGGTACTGGTAGGAAATC+AGG + chr4.3:69439081-69439100 None:intergenic 45.0%
!! TGAAGGCACCAAACTGAACA+AGG + chr4.3:69437524-69437543 None:intergenic 45.0%
!!! CATGGACCTGTTTTTACACC+AGG - chr4.3:69438356-69438375 MS.gene88045:intron 45.0%
ACATGAGTTAGAGCTGGTCG+AGG - chr4.3:69438229-69438248 MS.gene88045:intron 50.0%
ACTTGTAATGCAGGGTGAGC+AGG - chr4.3:69440420-69440439 MS.gene88045:CDS 50.0%
AGAAGAGTCGATGAGGGCAA+GGG - chr4.3:69438410-69438429 MS.gene88045:intron 50.0%
AGCAGTTAAAACCTTGGCGG+TGG + chr4.3:69437625-69437644 None:intergenic 50.0%
CATGACAAGAACCTTGAGGC+CGG + chr4.3:69439637-69439656 None:intergenic 50.0%
CATTAGGACCCAAGAAGTCG+GGG + chr4.3:69439771-69439790 None:intergenic 50.0%
GACTGCTGAGCAACGTCTAA+TGG - chr4.3:69438593-69438612 MS.gene88045:CDS 50.0%
GAGAAAGAGCAACAGCTACC+TGG + chr4.3:69438377-69438396 None:intergenic 50.0%
GAGGGCAAGGGATCAACTTA+TGG - chr4.3:69438422-69438441 MS.gene88045:intron 50.0%
GCAGAACCCTGCTGGATATA+CGG - chr4.3:69437956-69437975 MS.gene88045:intron 50.0%
GCGGGATCGAGAAATAAGCA+AGG + chr4.3:69437449-69437468 None:intergenic 50.0%
GTTCCAGAGAAACAACACGC+AGG + chr4.3:69440514-69440533 None:intergenic 50.0%
TAGAAGAGTCGATGAGGGCA+AGG - chr4.3:69438409-69438428 MS.gene88045:intron 50.0%
TATGGATGCCGACACGTACT+GGG - chr4.3:69437901-69437920 MS.gene88045:intron 50.0%
TGCTGAGCAACGTCTAATGG+TGG - chr4.3:69438596-69438615 MS.gene88045:CDS 50.0%
TTATGGATGCCGACACGTAC+TGG - chr4.3:69437900-69437919 MS.gene88045:intron 50.0%
! AATGGGCTTGATTCGTACGC+AGG - chr4.3:69437755-69437774 MS.gene88045:intron 50.0%
! CGGTAGAACTCTTGGGTTAG+AGG - chr4.3:69437869-69437888 MS.gene88045:intron 50.0%
! CTGGGGCAGTAGTTGCTATT+CGG - chr4.3:69438090-69438109 MS.gene88045:intron 50.0%
! TGGGGCAGTAGTTGCTATTC+GGG - chr4.3:69438091-69438110 MS.gene88045:intron 50.0%
!! ATGCCTGCGTGTTGTTTCTC+TGG - chr4.3:69440508-69440527 MS.gene88045:CDS 50.0%
!! CGGTTTTGTCCCAGTTTGAG+TGG + chr4.3:69439974-69439993 None:intergenic 50.0%
!! GGCTATCACTTGGTACTGGT+AGG + chr4.3:69439089-69439108 None:intergenic 50.0%
AAGCCCAAGCCCACTTCCAA+CGG + chr4.3:69439325-69439344 None:intergenic 55.0%
AGCTCCAACCCAGTACGTGT+CGG + chr4.3:69437912-69437931 None:intergenic 55.0%
AGGCAGCATTTCCATCGCTG+TGG - chr4.3:69439017-69439036 MS.gene88045:CDS 55.0%
CGAATAGCAACTACTGCCCC+AGG + chr4.3:69438092-69438111 None:intergenic 55.0%
CGGCCTCAAGGTTCTTGTCA+TGG - chr4.3:69439635-69439654 MS.gene88045:CDS 55.0%
GATTTGCCGGTGCATGCGAT+TGG - chr4.3:69438928-69438947 MS.gene88045:intron 55.0%
GGTCGAGGTAGTTGCTGATC+AGG - chr4.3:69438244-69438263 MS.gene88045:intron 55.0%
GTGAGCAGGTCAGCGACAAA+GGG - chr4.3:69440434-69440453 MS.gene88045:CDS 55.0%
TCATCGCCAATCGCATGCAC+CGG + chr4.3:69438937-69438956 None:intergenic 55.0%
TTGAGACAGCAGAACCCTGC+TGG - chr4.3:69437948-69437967 MS.gene88045:intron 55.0%
! AATCCCGTTGGAAGTGGGCT+TGG - chr4.3:69439318-69439337 MS.gene88045:intron 55.0%
! ATCCCGTTGGAAGTGGGCTT+GGG - chr4.3:69439319-69439338 MS.gene88045:intron 55.0%
AGCCCAAGCCCACTTCCAAC+GGG + chr4.3:69439324-69439343 None:intergenic 60.0%
GATGCCGACACGTACTGGGT+TGG - chr4.3:69437905-69437924 MS.gene88045:intron 60.0%
GGTGAGCAGGTCAGCGACAA+AGG - chr4.3:69440433-69440452 MS.gene88045:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 69437357 69440787 69437357 ID=MS.gene88045
chr4.3 mRNA 69437357 69440787 69437357 ID=MS.gene88045.t1;Parent=MS.gene88045
chr4.3 exon 69439879 69440787 69439879 ID=MS.gene88045.t1.exon1;Parent=MS.gene88045.t1
chr4.3 CDS 69439879 69440787 69439879 ID=cds.MS.gene88045.t1;Parent=MS.gene88045.t1
chr4.3 exon 69439398 69439766 69439398 ID=MS.gene88045.t1.exon2;Parent=MS.gene88045.t1
chr4.3 CDS 69439398 69439766 69439398 ID=cds.MS.gene88045.t1;Parent=MS.gene88045.t1
chr4.3 exon 69439016 69439282 69439016 ID=MS.gene88045.t1.exon3;Parent=MS.gene88045.t1
chr4.3 CDS 69439016 69439282 69439016 ID=cds.MS.gene88045.t1;Parent=MS.gene88045.t1
chr4.3 exon 69438786 69438913 69438786 ID=MS.gene88045.t1.exon4;Parent=MS.gene88045.t1
chr4.3 CDS 69438786 69438913 69438786 ID=cds.MS.gene88045.t1;Parent=MS.gene88045.t1
chr4.3 exon 69438477 69438674 69438477 ID=MS.gene88045.t1.exon5;Parent=MS.gene88045.t1
chr4.3 CDS 69438477 69438674 69438477 ID=cds.MS.gene88045.t1;Parent=MS.gene88045.t1
chr4.3 exon 69437357 69437711 69437357 ID=MS.gene88045.t1.exon6;Parent=MS.gene88045.t1
chr4.3 CDS 69437357 69437711 69437357 ID=cds.MS.gene88045.t1;Parent=MS.gene88045.t1
Gene Sequence

>MS.gene88045

ATGATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATACATATCAGATTTCTTCATCGCCCTTGCTTATTTCTCGATCCCGCTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCAACACATCTAATAAATTTATGGACCTTCACAATTCATACAAGAACCGTGGCAATTGTAATGACCACCGCCAAGGTTTTAACTGCTGTCGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGAGAATTATTTTTGAAGAACAAGGCTGCGGAGCTTGATAGAGAAATGGGCTTGATTCGTACGCAGGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGTACTCTTGATAGACATACAATACTGAAAACGACCCTTGTTGAACTCGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCGACACGTACTGGGTTGGAGCTTCAACTTTCTTACACATTGAGACAGCAGAACCCTGCTGGATATACGGTACCTATTAATTTTCCTGTGATCAACCACGTATTTAGTAGCAACCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGCAAAATACATGCCTGGGGCAGTAGTTGCTATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACTAGAAGCTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTGGTCGAGGTAGTTGCTGATCAGGTTAGTAATTCGCCATTTTATTCAGTTTCCTTTGTAGCGTATTTCTTTACATGTTTTTTGCTTCACTTTTATTCGACCGATATTCTTTTACATGGACCTGTTTTTACACCAGGTAGCTGTTGCTCTTTCTCATGCTGCAATCTTAGAAGAGTCGATGAGGGCAAGGGATCAACTTATGGAGCAGAATGTTGCACTTGATATGGCAAGAAGAGAAGCAGAAACTGCAATTCATGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATTTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTAAAAAGCAGTAATTTATTAGCTACCCTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAACATTTAACCTTCATTCGTTGTTTAGAGAGGTACAATTTTCGCCTAAATCCCGAAAAGTTCAACTATATTAGTCTGCCTAGTAGCTTATGATCTTTGAGTTTCTTCAAAAGCTTGATGTTGTTAGACTTGTTATTCTGATTGCAGGTCCTTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTCGCATCAGATTTGCCGGTGCATGCGATTGGCGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGTAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCGCTGTGGTTGTTGTAAAGCCTGAATCCTTCCGGGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTTTGTTTCGTCAAGCTTTACTAATTTTCTTCTGTTTTGGTATATTGTATCGTCTGTTATCTGATTTCGAAGGTGGAATATATTTTGTTTTCCACGTTATAGGTAAAAGATTCAGGATCAGGAATGAATCCACAAGACATCCCAAAGTTATTCACTAAGTTTGCACAAAACCAAACATTAGCAACAAAAAATCCCGTTGGAAGTGGGCTTGGGCTTGCAATTTGTAAAAGGTATTATATTCTTGTATAGTTACTGATGTGAAACATATTAATTTGTTCTCTTCAATATTGGTATTTATGATTTTCTATTGATTGCGTCCGGTATCTTTAATCTGTGAGCAGGTTTGTGAATCTCATGGAAGGACATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGCCACTTTCATTGTAAAACTCGGAATCCCGGACCGTCCAATTGAACATAAACTACCTTACAAACCTAAAGCTCTAGTAAATCATGGATCTACAAACATTTCCGGCCTCAAGGTTCTTGTCATGGATGATAATGGGTCAGTAACAGCTTTATTTCCGTACCTTCAGTTGTGAAATTTGTTACTATGTCTGGTGATTTTATAGAAAAGTAAACTTAGGTTGACTTCTTACTTTAAGCCCCGACTTCTTGGGTCCTAATGATATTCTTGAAAGCATGATAATACTTCTGTGCTGAATGCTCATATTGCTTACTACTAGTCCAAAGTAAATCTATATACATCAAGGTTTAGCTGCTAAACTTTTTTAATTTACACTCCCTAAAAGCAATGTTTTAAAAACTGAATCAGAGAGACATCTTGGTCATGGTTCACTGCAATAAACCACTCAAACTGGGACAAAACCGTGTTCTAACTGTTTAAAGAACTGAACGTAGAGAATGCTGTTCACAATTTAACAGGCTGAACTGTCCGGTTTGCTTTTCATAGTCCTTGATGGGACATTATGGTTTTAGTTTGATCGATGTAGTTGACCCCACTTACTATGAAAAGACTTACTGGTGGTTGTTGGTGTAACAAGCTTTAATACCATATCAAGGAATATTTCTAGTATAAATTTAAACTTTTAGGTGAAGGTACCTGAATTTTTATTTGACAATTTGTATGTTCATTGACACTCACTTTATAGCCAGAAAAGAAAATATACATAATGCATGCAGTCTTCATTCAGTCTTCTACTTGCAATCTAACTTGGAAGTCAGATGAATTGTTTAGTGGCTGATGCATTTGCTACGTTTACTCTTTCCCTTGCTTGTCTCATAACTGATGGTGAAACTTGTAATGCAGGGTGAGCAGGTCAGCGACAAAGGGACTTCTTATCCATTTAGGATGCGATGTCACAACTGTTAGCTCAAGCGAAGAATGCCTGCGTGTTGTTTCTCTGGAACACAAAGTCGTCTTTATGGATGTTTGTACAGGATTAGATGGTTATGAATTAGCGGTCCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCACTTATAGTTGCTCTTACCGGAAATACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTAAATGGCGTAGTTTTAAAACCTGTTTCTGTTGAGAAGATGAAAGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA
Protein sequence

>MS.gene88045.t1

MMESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPAGYTVPINFPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISTFNLHSLFREVLNLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISIAVVVVKPESFRDIRFPDFLPVPSDSHFYLRVQVKDSGSGMNPQDIPKLFTKFAQNQTLATKNPVGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTATFIVKLGIPDRPIEHKLPYKPKALVNHGSTNISGLKVLVMDDNGVSRSATKGLLIHLGCDVTTVSSSEECLRVVSLEHKVVFMDVCTGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGVVLKPVSVEKMKGVLTELLERRFVFETI