Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88239.t1 | XP_003606113.1 | 98.6 | 420 | 6 | 0 | 1 | 420 | 1 | 420 | 1.10E-233 | 818.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88239.t1 | Q9ZW88 | 72.3 | 419 | 116 | 0 | 2 | 420 | 1 | 419 | 3.1e-173 | 609.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88239.t1 | G7JIE1 | 98.6 | 420 | 6 | 0 | 1 | 420 | 1 | 420 | 7.7e-234 | 818.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36810 | MS.gene88239 | PPI |
| MS.gene055754 | MS.gene88239 | PPI |
| MS.gene36752 | MS.gene88239 | PPI |
| MS.gene32300 | MS.gene88239 | PPI |
| MS.gene36764 | MS.gene88239 | PPI |
| MS.gene36942 | MS.gene88239 | PPI |
| MS.gene36763 | MS.gene88239 | PPI |
| MS.gene36804 | MS.gene88239 | PPI |
| MS.gene032379 | MS.gene88239 | PPI |
| MS.gene88239 | MS.gene072231 | PPI |
| MS.gene36807 | MS.gene88239 | PPI |
| MS.gene36743 | MS.gene88239 | PPI |
| MS.gene007794 | MS.gene88239 | PPI |
| MS.gene072244 | MS.gene88239 | PPI |
| MS.gene36809 | MS.gene88239 | PPI |
| MS.gene32305 | MS.gene88239 | PPI |
| MS.gene88239 | MS.gene36943 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88239.t1 | MTR_4g053260 | 98.571 | 420 | 6 | 0 | 1 | 420 | 1 | 420 | 0.0 | 848 |
| MS.gene88239.t1 | MTR_1g060040 | 66.826 | 419 | 139 | 0 | 2 | 420 | 1 | 419 | 0.0 | 546 |
| MS.gene88239.t1 | MTR_7g104490 | 63.484 | 419 | 153 | 0 | 2 | 420 | 1 | 419 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88239.t1 | AT1G67190 | 72.315 | 419 | 116 | 0 | 2 | 420 | 1 | 419 | 0.0 | 608 |
| MS.gene88239.t1 | AT1G67190 | 72.315 | 419 | 116 | 0 | 2 | 420 | 1 | 419 | 0.0 | 608 |
Find 89 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCATCTGGTAAAATTT+TGG | 0.172000 | 4.4:+49185336 | None:intergenic |
| TGAGGATGAGGTTGTGGATT+TGG | 0.254844 | 4.4:-49185262 | MS.gene88239:CDS |
| CAGTTTGGACAAGTTTATAT+TGG | 0.269366 | 4.4:-49185538 | MS.gene88239:CDS |
| TCTGGAGAATGTTGTTGTTT+TGG | 0.290641 | 4.4:-49185142 | MS.gene88239:CDS |
| ATCGACATCTTCCATCAAAA+TGG | 0.308813 | 4.4:+49185932 | None:intergenic |
| AACCATGGATGTGGTGAAAT+TGG | 0.318949 | 4.4:+49184981 | None:intergenic |
| TTTAAAGAGGCTTAGGCTTT+GGG | 0.320285 | 4.4:-49185301 | MS.gene88239:CDS |
| ATTTAAAGAGGCTTAGGCTT+TGG | 0.321881 | 4.4:-49185302 | MS.gene88239:CDS |
| CAGCTTCCTGTTGAAGTGAT+TGG | 0.330061 | 4.4:-49186161 | MS.gene88239:CDS |
| CACGGAAACCTCTGATAATT+CGG | 0.345988 | 4.4:+49185741 | None:intergenic |
| TAAGCTGGAAGTACTTGATT+TGG | 0.354707 | 4.4:-49185790 | MS.gene88239:CDS |
| TGACTAGTTTCTTGAGAATA+GGG | 0.359514 | 4.4:+49185055 | None:intergenic |
| CTTCAAATTTAAAGAGGCTT+AGG | 0.375452 | 4.4:-49185308 | MS.gene88239:CDS |
| TGCGTTGGATTTGAGTCTTT+TGG | 0.381205 | 4.4:-49185682 | MS.gene88239:CDS |
| CGGCGTCTGCTGTTATTGCT+TGG | 0.385178 | 4.4:-49185902 | MS.gene88239:CDS |
| TTTACAAGGCTCTTCTCATC+TGG | 0.390921 | 4.4:-49185160 | MS.gene88239:CDS |
| TATGCCGAATGTTAACATTC+TGG | 0.391323 | 4.4:-49185829 | MS.gene88239:CDS |
| TGGAGCATAATTCCATTGTT+GGG | 0.394380 | 4.4:-49185770 | MS.gene88239:CDS |
| AGCTTCCTGTTGAAGTGATT+GGG | 0.400824 | 4.4:-49186160 | MS.gene88239:CDS |
| ATGACTAGTTTCTTGAGAAT+AGG | 0.400878 | 4.4:+49185054 | None:intergenic |
| TGTCCTTTAGCTCGAATGAT+TGG | 0.401648 | 4.4:-49186040 | MS.gene88239:CDS |
| GTCGATCCTAAAATTCTTCA+AGG | 0.405823 | 4.4:+49185443 | None:intergenic |
| TTGGAGCATAATTCCATTGT+TGG | 0.407591 | 4.4:-49185771 | MS.gene88239:CDS |
| AGCTTTGGAGCTTGTAAATC+CGG | 0.420803 | 4.4:-49185637 | MS.gene88239:CDS |
| CGAGATCTTCAAATTTAAAG+AGG | 0.423208 | 4.4:-49185314 | MS.gene88239:CDS |
| TCAGCAACTTCACAATCATT+TGG | 0.423879 | 4.4:-49185359 | MS.gene88239:CDS |
| ATGTTCCCAATCACTTCAAC+AGG | 0.428833 | 4.4:+49186155 | None:intergenic |
| GTGTCCGAGGATTGAAGCTT+TGG | 0.433033 | 4.4:-49185652 | MS.gene88239:CDS |
| TAAGCAGCCCCTCGACCCAC+TGG | 0.433128 | 4.4:+49185085 | None:intergenic |
| TTAACATTCTGGAGATTTGT+GGG | 0.446810 | 4.4:-49185818 | MS.gene88239:CDS |
| CCTCGGCAACATGCAAGAAA+TGG | 0.450786 | 4.4:-49186094 | MS.gene88239:CDS |
| TTGAAGATCTCGAAATCATC+TGG | 0.455138 | 4.4:+49185325 | None:intergenic |
| ATCTCCAGAATGTTAACATT+CGG | 0.457841 | 4.4:+49185825 | None:intergenic |
| GTTAACATTCTGGAGATTTG+TGG | 0.459161 | 4.4:-49185819 | MS.gene88239:CDS |
| CGACCAATCATTCGAGCTAA+AGG | 0.471782 | 4.4:+49186037 | None:intergenic |
| TTATGTTGAAGCAATCAGTT+TGG | 0.472225 | 4.4:-49185553 | MS.gene88239:CDS |
| TTTGGACAAGTTTATATTGG+AGG | 0.477597 | 4.4:-49185535 | MS.gene88239:CDS |
| GCATCAGACATTGCAATCTC+CGG | 0.479437 | 4.4:+49185618 | None:intergenic |
| CATCCCTTGCAGCCTTGAGA+TGG | 0.484957 | 4.4:+49186126 | None:intergenic |
| AGAGATGGAGTGCTTCACTA+TGG | 0.486501 | 4.4:-49185183 | MS.gene88239:CDS |
| CTCAAGAAACTAGTCATTCA+CGG | 0.489176 | 4.4:-49185048 | MS.gene88239:CDS |
| CGATGATGAGGATGAGGTTG+TGG | 0.494586 | 4.4:-49185268 | MS.gene88239:CDS |
| AGCTCCAAAGCTTCAATCCT+CGG | 0.497092 | 4.4:+49185648 | None:intergenic |
| AAGTTTATATTGGAGGCTGA+TGG | 0.502708 | 4.4:-49185528 | MS.gene88239:CDS |
| GGAAGATGTCGATGAATTCT+CGG | 0.502995 | 4.4:-49185922 | MS.gene88239:CDS |
| GATTTGTGGGAGGCATAAGC+TGG | 0.505044 | 4.4:-49185805 | MS.gene88239:CDS |
| GTGCTTCACTATGGTTTACA+AGG | 0.514230 | 4.4:-49185174 | MS.gene88239:CDS |
| CATTCACGGTGTTGTTTCCG+AGG | 0.515633 | 4.4:-49185034 | MS.gene88239:CDS |
| TTGCTTGGCTTATGTACACC+AGG | 0.528196 | 4.4:-49185887 | MS.gene88239:CDS |
| AGTTTATATTGGAGGCTGAT+GGG | 0.528821 | 4.4:-49185527 | MS.gene88239:CDS |
| AGCCAATTTCACCACATCCA+TGG | 0.531036 | 4.4:-49184983 | MS.gene88239:CDS |
| AGAGATAAATGACTCAGGTA+TGG | 0.532724 | 4.4:+49185219 | None:intergenic |
| CAATTGCCTCAGAGTCTCCC+TGG | 0.532959 | 4.4:+49185869 | None:intergenic |
| CCATTTCTTGCATGTTGCCG+AGG | 0.538491 | 4.4:+49186094 | None:intergenic |
| CATCAGCTCAACCATGGATG+TGG | 0.539794 | 4.4:+49184972 | None:intergenic |
| CATCCATGGTTGAGCTGATG+AGG | 0.541436 | 4.4:-49184969 | MS.gene88239:CDS |
| ATCCCTTGCAGCCTTGAGAT+GGG | 0.542502 | 4.4:+49186127 | None:intergenic |
| ATCCCATCTCAAGGCTGCAA+GGG | 0.546912 | 4.4:-49186129 | MS.gene88239:CDS |
| GGAGCATAATTCCATTGTTG+GGG | 0.547575 | 4.4:-49185769 | MS.gene88239:CDS |
| TCTCAAGGCTGCAAGGGATG+TGG | 0.548007 | 4.4:-49186123 | MS.gene88239:CDS |
| CTTTAGCTCGAATGATTGGT+CGG | 0.556087 | 4.4:-49186036 | MS.gene88239:CDS |
| TATCCCATCTCAAGGCTGCA+AGG | 0.556217 | 4.4:-49186130 | MS.gene88239:CDS |
| AAGCAGCCCCTCGACCCACT+GGG | 0.569654 | 4.4:+49185086 | None:intergenic |
| TGTGATCAAAATCTCAAGAC+GGG | 0.571900 | 4.4:+49185992 | None:intergenic |
| GGTCGAGAATCTTGAGAGTG+TGG | 0.574858 | 4.4:-49185385 | MS.gene88239:CDS |
| TTCTTCATCAGACTTAGCCT+CGG | 0.578132 | 4.4:+49185017 | None:intergenic |
| GGATGTGATGTTCGATGATG+AGG | 0.585532 | 4.4:-49185280 | MS.gene88239:CDS |
| TTGTGTTAGTATATCTGCGT+TGG | 0.586686 | 4.4:-49185697 | MS.gene88239:CDS |
| ATTCGGCTCAACCCCAACAA+TGG | 0.586694 | 4.4:+49185758 | None:intergenic |
| CTGAGTTATGATGTGAGAGA+TGG | 0.590837 | 4.4:-49185198 | MS.gene88239:CDS |
| ACATCTTGACATTGGTGAGA+CGG | 0.597711 | 4.4:-49185406 | MS.gene88239:CDS |
| AAGGGATGTGGTGATAGCCT+CGG | 0.602611 | 4.4:-49186111 | MS.gene88239:CDS |
| TCTCCTCATCAGCTCAACCA+TGG | 0.619817 | 4.4:+49184966 | None:intergenic |
| AACTCAGAGATAAATGACTC+AGG | 0.621606 | 4.4:+49185214 | None:intergenic |
| AGTGTTATACATCTTGACAT+TGG | 0.622017 | 4.4:-49185414 | MS.gene88239:CDS |
| GATTGCAATGTCTGATGCAA+TGG | 0.623873 | 4.4:-49185613 | MS.gene88239:CDS |
| AATGGAAAGCGACTGCAACC+CGG | 0.628343 | 4.4:+49185950 | None:intergenic |
| GGGTTGAGCCGAATTATCAG+AGG | 0.628727 | 4.4:-49185749 | MS.gene88239:CDS |
| AACGAAAGTGATTTCAAACA+CGG | 0.631215 | 4.4:+49185723 | None:intergenic |
| GTGTGATCAAAATCTCAAGA+CGG | 0.631778 | 4.4:+49185991 | None:intergenic |
| TCGAGCTAAAGGACAATGTG+TGG | 0.633617 | 4.4:+49186048 | None:intergenic |
| GATGTTCGATGATGAGGATG+AGG | 0.639465 | 4.4:-49185274 | MS.gene88239:CDS |
| GACGGGTCGTTGACAAATCG+CGG | 0.651253 | 4.4:+49186009 | None:intergenic |
| GAACATACTATCCCATCTCA+AGG | 0.653061 | 4.4:-49186138 | MS.gene88239:CDS |
| TGCTTGGCTTATGTACACCA+GGG | 0.664685 | 4.4:-49185886 | MS.gene88239:CDS |
| ACTCAGGTATGGAAAGCAAG+TGG | 0.667455 | 4.4:+49185230 | None:intergenic |
| CGTCGAGCTACTCAATTCAA+CGG | 0.669195 | 4.4:+49185587 | None:intergenic |
| TGTACACCAGGGAGACTCTG+AGG | 0.674668 | 4.4:-49185875 | MS.gene88239:CDS |
| ACATTCTGGAGATTTGTGGG+AGG | 0.676084 | 4.4:-49185815 | MS.gene88239:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATCATCTGGTAAAATTT+TGG | + | chr4.4:49185767-49185786 | None:intergenic | 25.0% |
| AACGAAAGTGATTTCAAACA+CGG | + | chr4.4:49185380-49185399 | None:intergenic | 30.0% | |
| AGTGTTATACATCTTGACAT+TGG | - | chr4.4:49185686-49185705 | MS.gene88239:CDS | 30.0% | |
| ATCTCCAGAATGTTAACATT+CGG | + | chr4.4:49185278-49185297 | None:intergenic | 30.0% | |
| CAGTTTGGACAAGTTTATAT+TGG | - | chr4.4:49185562-49185581 | MS.gene88239:CDS | 30.0% | |
| CGAGATCTTCAAATTTAAAG+AGG | - | chr4.4:49185786-49185805 | MS.gene88239:CDS | 30.0% | |
| CTTCAAATTTAAAGAGGCTT+AGG | - | chr4.4:49185792-49185811 | MS.gene88239:CDS | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | - | chr4.4:49185547-49185566 | MS.gene88239:CDS | 30.0% | |
| TTTGGACAAGTTTATATTGG+AGG | - | chr4.4:49185565-49185584 | MS.gene88239:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | - | chr4.4:49185626-49185645 | MS.gene88239:CDS | 30.0% |
| ! | TTAACATTCTGGAGATTTGT+GGG | - | chr4.4:49185282-49185301 | MS.gene88239:CDS | 30.0% |
| !! | ATGACTAGTTTCTTGAGAAT+AGG | + | chr4.4:49186049-49186068 | None:intergenic | 30.0% |
| !! | TGACTAGTTTCTTGAGAATA+GGG | + | chr4.4:49186048-49186067 | None:intergenic | 30.0% |
| AACTCAGAGATAAATGACTC+AGG | + | chr4.4:49185889-49185908 | None:intergenic | 35.0% | |
| AAGTTTATATTGGAGGCTGA+TGG | - | chr4.4:49185572-49185591 | MS.gene88239:CDS | 35.0% | |
| AGAGATAAATGACTCAGGTA+TGG | + | chr4.4:49185884-49185903 | None:intergenic | 35.0% | |
| AGTTTATATTGGAGGCTGAT+GGG | - | chr4.4:49185573-49185592 | MS.gene88239:CDS | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | + | chr4.4:49185171-49185190 | None:intergenic | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | - | chr4.4:49185798-49185817 | MS.gene88239:CDS | 35.0% | |
| CTCAAGAAACTAGTCATTCA+CGG | - | chr4.4:49186052-49186071 | MS.gene88239:CDS | 35.0% | |
| GTCGATCCTAAAATTCTTCA+AGG | + | chr4.4:49185660-49185679 | None:intergenic | 35.0% | |
| GTGTGATCAAAATCTCAAGA+CGG | + | chr4.4:49185112-49185131 | None:intergenic | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | - | chr4.4:49185271-49185290 | MS.gene88239:CDS | 35.0% | |
| TCAGCAACTTCACAATCATT+TGG | - | chr4.4:49185741-49185760 | MS.gene88239:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | - | chr4.4:49185330-49185349 | MS.gene88239:CDS | 35.0% | |
| TGTGATCAAAATCTCAAGAC+GGG | + | chr4.4:49185111-49185130 | None:intergenic | 35.0% | |
| TTGAAGATCTCGAAATCATC+TGG | + | chr4.4:49185778-49185797 | None:intergenic | 35.0% | |
| TTGGAGCATAATTCCATTGT+TGG | - | chr4.4:49185329-49185348 | MS.gene88239:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | - | chr4.4:49185403-49185422 | MS.gene88239:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | - | chr4.4:49185799-49185818 | MS.gene88239:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | - | chr4.4:49185631-49185650 | MS.gene88239:CDS | 35.0% |
| ! | GTTAACATTCTGGAGATTTG+TGG | - | chr4.4:49185281-49185300 | MS.gene88239:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | - | chr4.4:49185632-49185651 | MS.gene88239:CDS | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | - | chr4.4:49186000-49186019 | MS.gene88239:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | - | chr4.4:49185999-49186018 | MS.gene88239:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | - | chr4.4:49185633-49185652 | MS.gene88239:CDS | 35.0% |
| !! | AGACTATTTTTCAGACATCC+GGG | - | chr4.4:49185132-49185151 | MS.gene88239:CDS | 35.0% |
| !! | CAGACTATTTTTCAGACATC+CGG | - | chr4.4:49185131-49185150 | MS.gene88239:CDS | 35.0% |
| !! | TAAGCTGGAAGTACTTGATT+TGG | - | chr4.4:49185310-49185329 | MS.gene88239:CDS | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | - | chr4.4:49185965-49185984 | MS.gene88239:CDS | 35.0% |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | - | chr4.4:49185958-49185977 | MS.gene88239:CDS | 35.0% |
| AACCATGGATGTGGTGAAAT+TGG | + | chr4.4:49186122-49186141 | None:intergenic | 40.0% | |
| ACATCTTGACATTGGTGAGA+CGG | - | chr4.4:49185694-49185713 | MS.gene88239:CDS | 40.0% | |
| AGCTTCCTGTTGAAGTGATT+GGG | - | chr4.4:49184940-49184959 | MS.gene88239:CDS | 40.0% | |
| ATGTTCCCAATCACTTCAAC+AGG | + | chr4.4:49184948-49184967 | None:intergenic | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | + | chr4.4:49185362-49185381 | None:intergenic | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | - | chr4.4:49185902-49185921 | MS.gene88239:CDS | 40.0% | |
| GAACATACTATCCCATCTCA+AGG | - | chr4.4:49184962-49184981 | MS.gene88239:CDS | 40.0% | |
| GATTGCAATGTCTGATGCAA+TGG | - | chr4.4:49185487-49185506 | MS.gene88239:CDS | 40.0% | |
| GGAAGATGTCGATGAATTCT+CGG | - | chr4.4:49185178-49185197 | MS.gene88239:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | - | chr4.4:49185331-49185350 | MS.gene88239:CDS | 40.0% | |
| GTGCTTCACTATGGTTTACA+AGG | - | chr4.4:49185926-49185945 | MS.gene88239:CDS | 40.0% | |
| TTCTTCATCAGACTTAGCCT+CGG | + | chr4.4:49186086-49186105 | None:intergenic | 40.0% | |
| TTTACAAGGCTCTTCTCATC+TGG | - | chr4.4:49185940-49185959 | MS.gene88239:CDS | 40.0% | |
| ! | AGGGGACCTTGAAGAATTTT+AGG | - | chr4.4:49185651-49185670 | MS.gene88239:CDS | 40.0% |
| ! | CTTTAGCTCGAATGATTGGT+CGG | - | chr4.4:49185064-49185083 | MS.gene88239:CDS | 40.0% |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | - | chr4.4:49185418-49185437 | MS.gene88239:CDS | 40.0% |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | - | chr4.4:49185060-49185079 | MS.gene88239:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTAAATC+CGG | - | chr4.4:49185463-49185482 | MS.gene88239:CDS | 40.0% |
| ACTCAGGTATGGAAAGCAAG+TGG | + | chr4.4:49185873-49185892 | None:intergenic | 45.0% | |
| AGCCAATTTCACCACATCCA+TGG | - | chr4.4:49186117-49186136 | MS.gene88239:CDS | 45.0% | |
| AGCTCCAAAGCTTCAATCCT+CGG | + | chr4.4:49185455-49185474 | None:intergenic | 45.0% | |
| CAGCTTCCTGTTGAAGTGAT+TGG | - | chr4.4:49184939-49184958 | MS.gene88239:CDS | 45.0% | |
| CGACCAATCATTCGAGCTAA+AGG | + | chr4.4:49185066-49185085 | None:intergenic | 45.0% | |
| CGTCGAGCTACTCAATTCAA+CGG | + | chr4.4:49185516-49185535 | None:intergenic | 45.0% | |
| GATGTTCGATGATGAGGATG+AGG | - | chr4.4:49185826-49185845 | MS.gene88239:CDS | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | + | chr4.4:49185485-49185504 | None:intergenic | 45.0% | |
| GGATGTGATGTTCGATGATG+AGG | - | chr4.4:49185820-49185839 | MS.gene88239:CDS | 45.0% | |
| TCGAGCTAAAGGACAATGTG+TGG | + | chr4.4:49185055-49185074 | None:intergenic | 45.0% | |
| TGAGGATGAGGTTGTGGATT+TGG | - | chr4.4:49185838-49185857 | MS.gene88239:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | - | chr4.4:49185214-49185233 | MS.gene88239:CDS | 45.0% | |
| TTGCTTGGCTTATGTACACC+AGG | - | chr4.4:49185213-49185232 | MS.gene88239:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | - | chr4.4:49185285-49185304 | MS.gene88239:CDS | 45.0% |
| ! | AGAGATGGAGTGCTTCACTA+TGG | - | chr4.4:49185917-49185936 | MS.gene88239:CDS | 45.0% |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | - | chr4.4:49185157-49185176 | MS.gene88239:CDS | 45.0% |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | - | chr4.4:49185969-49185988 | MS.gene88239:CDS | 45.0% |
| AAGGGATGTGGTGATAGCCT+CGG | - | chr4.4:49184989-49185008 | MS.gene88239:CDS | 50.0% | |
| AATGGAAAGCGACTGCAACC+CGG | + | chr4.4:49185153-49185172 | None:intergenic | 50.0% | |
| ATCCCATCTCAAGGCTGCAA+GGG | - | chr4.4:49184971-49184990 | MS.gene88239:CDS | 50.0% | |
| ATCCCTTGCAGCCTTGAGAT+GGG | + | chr4.4:49184976-49184995 | None:intergenic | 50.0% | |
| ATTCGGCTCAACCCCAACAA+TGG | + | chr4.4:49185345-49185364 | None:intergenic | 50.0% | |
| CATCAGCTCAACCATGGATG+TGG | + | chr4.4:49186131-49186150 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | - | chr4.4:49186131-49186150 | MS.gene88239:CDS | 50.0% | |
| CCATTTCTTGCATGTTGCCG+AGG | + | chr4.4:49185009-49185028 | None:intergenic | 50.0% | |
| CCTCGGCAACATGCAAGAAA+TGG | - | chr4.4:49185006-49185025 | MS.gene88239:CDS | 50.0% | |
| CGATGATGAGGATGAGGTTG+TGG | - | chr4.4:49185832-49185851 | MS.gene88239:CDS | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | - | chr4.4:49185351-49185370 | MS.gene88239:CDS | 50.0% | |
| GGTCGAGAATCTTGAGAGTG+TGG | - | chr4.4:49185715-49185734 | MS.gene88239:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | - | chr4.4:49185448-49185467 | MS.gene88239:CDS | 50.0% | |
| TATCCCATCTCAAGGCTGCA+AGG | - | chr4.4:49184970-49184989 | MS.gene88239:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | + | chr4.4:49186137-49186156 | None:intergenic | 50.0% | |
| ! | GATTTGTGGGAGGCATAAGC+TGG | - | chr4.4:49185295-49185314 | MS.gene88239:CDS | 50.0% |
| !! | CATTCACGGTGTTGTTTCCG+AGG | - | chr4.4:49186066-49186085 | MS.gene88239:CDS | 50.0% |
| CAATTGCCTCAGAGTCTCCC+TGG | + | chr4.4:49185234-49185253 | None:intergenic | 55.0% | |
| CATCCCTTGCAGCCTTGAGA+TGG | + | chr4.4:49184977-49184996 | None:intergenic | 55.0% | |
| CGGCGTCTGCTGTTATTGCT+TGG | - | chr4.4:49185198-49185217 | MS.gene88239:CDS | 55.0% | |
| GACGGGTCGTTGACAAATCG+CGG | + | chr4.4:49185094-49185113 | None:intergenic | 55.0% | |
| TCTCAAGGCTGCAAGGGATG+TGG | - | chr4.4:49184977-49184996 | MS.gene88239:CDS | 55.0% | |
| TGTACACCAGGGAGACTCTG+AGG | - | chr4.4:49185225-49185244 | MS.gene88239:CDS | 55.0% | |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | - | chr4.4:49186007-49186026 | MS.gene88239:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | - | chr4.4:49186006-49186025 | MS.gene88239:CDS | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | - | chr4.4:49186008-49186027 | MS.gene88239:CDS | 55.0% |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | - | chr4.4:49185435-49185454 | MS.gene88239:CDS | 55.0% |
| AAGCAGCCCCTCGACCCACT+GGG | + | chr4.4:49186017-49186036 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | + | chr4.4:49186018-49186037 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 49184930 | 49186192 | 49184930 | ID=MS.gene88239 |
| chr4.4 | mRNA | 49184930 | 49186192 | 49184930 | ID=MS.gene88239.t1;Parent=MS.gene88239 |
| chr4.4 | exon | 49184930 | 49186192 | 49184930 | ID=MS.gene88239.t1.exon1;Parent=MS.gene88239.t1 |
| chr4.4 | CDS | 49184930 | 49186192 | 49184930 | ID=cds.MS.gene88239.t1;Parent=MS.gene88239.t1 |
| Gene Sequence |
| Protein sequence |
