Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88296.t1 | XP_013453889.1 | 98.1 | 313 | 6 | 0 | 1 | 313 | 26 | 338 | 4.40E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88296.t1 | Q96519 | 71.7 | 307 | 86 | 1 | 8 | 313 | 30 | 336 | 4.4e-132 | 472.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88296.t1 | A0A072UQ08 | 98.1 | 313 | 6 | 0 | 1 | 313 | 26 | 338 | 3.2e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053957 | MS.gene88296 | 0.96667 | 3.13E-126 | -1.69E-46 |
| MS.gene053958 | MS.gene88296 | 0.989763 | 1.54E-179 | -1.69E-46 |
| MS.gene053961 | MS.gene88296 | 0.967404 | 3.13E-127 | -1.69E-46 |
| MS.gene058015 | MS.gene88296 | 0.854236 | 1.41E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGATTCAATGGTCAAAA+TGG | 0.150346 | 5.3:+41002431 | MS.gene88296:CDS |
| TAGGCCTTGATAAAGAAATT+TGG | 0.197512 | 5.3:-41001318 | None:intergenic |
| GATGATACATACACACTTAA+AGG | 0.209734 | 5.3:+41000943 | MS.gene88296:CDS |
| TTCTATCAGTTACTATTAAA+AGG | 0.244929 | 5.3:+41002297 | MS.gene88296:CDS |
| CTTCCATGACTGCTTTATTC+AGG | 0.245006 | 5.3:+41000448 | MS.gene88296:CDS |
| TTGGTGGACAAATAGATTTC+AGG | 0.248040 | 5.3:-41002209 | None:intergenic |
| ACCAACATCCACTCTTTAAA+AGG | 0.265822 | 5.3:+41000982 | MS.gene88296:CDS |
| GCTTCATCACTGGAGAAATT+AGG | 0.312437 | 5.3:+41002475 | MS.gene88296:CDS |
| AAATCTATTTGTCCACCAAT+TGG | 0.335126 | 5.3:+41002213 | MS.gene88296:CDS |
| TTCATCAGGTGTTGGAAGAT+TGG | 0.344913 | 5.3:-41001276 | None:intergenic |
| CCATTGAATCAGAGAATTGC+TGG | 0.348685 | 5.3:-41002422 | None:intergenic |
| AGGCCTTGATAAAGAAATTT+GGG | 0.352606 | 5.3:-41001317 | None:intergenic |
| GGCTAGAGATGCTGTAATTC+TGG | 0.365262 | 5.3:+41001089 | MS.gene88296:CDS |
| AATCTATTTGTCCACCAATT+GGG | 0.367894 | 5.3:+41002214 | MS.gene88296:CDS |
| TGTAGGTTGGTGGACCATAT+TGG | 0.381231 | 5.3:+41001198 | MS.gene88296:intron |
| TTGAACTGATTGTCTGAGAT+TGG | 0.384305 | 5.3:-41002183 | None:intergenic |
| ATTCCCAAATTTCTTTATCA+AGG | 0.393262 | 5.3:+41001314 | MS.gene88296:CDS |
| CTACTGTGTTTGACATTGTT+AGG | 0.395693 | 5.3:+41000363 | MS.gene88296:CDS |
| GTAGGTTGGTGGACCATATT+GGG | 0.400494 | 5.3:+41001199 | MS.gene88296:intron |
| CCAGCAATTCTCTGATTCAA+TGG | 0.417000 | 5.3:+41002422 | MS.gene88296:CDS |
| AGGCCTATCAGTCACGGATA+TGG | 0.421834 | 5.3:+41001334 | MS.gene88296:CDS |
| CAACCATATCCGTGACTGAT+AGG | 0.423843 | 5.3:-41001337 | None:intergenic |
| ACGGATATGGTTGCCCTTGT+CGG | 0.453404 | 5.3:+41001347 | MS.gene88296:CDS |
| AAAGAATTGTCGAAGAGATT+AGG | 0.456399 | 5.3:-41002276 | None:intergenic |
| GTAACGCAGCCTCGGTTGTT+CGG | 0.456843 | 5.3:+41000420 | MS.gene88296:CDS |
| CCCACAGGAACATCCCAATA+TGG | 0.467663 | 5.3:-41001212 | None:intergenic |
| TCTGATTCAATGGTCAAAAT+GGG | 0.468708 | 5.3:+41002432 | MS.gene88296:CDS |
| TGACATTGTTAGGAAGCAAA+TGG | 0.473769 | 5.3:+41000373 | MS.gene88296:CDS |
| ATCTATTTGTCCACCAATTG+GGG | 0.476877 | 5.3:+41002215 | MS.gene88296:CDS |
| GAAATGTACTCGAGTGTGTT+CGG | 0.477719 | 5.3:+41002345 | MS.gene88296:CDS |
| TAGGAAGCAAATGGAATGTT+CGG | 0.486422 | 5.3:+41000382 | MS.gene88296:CDS |
| ATAGAAACAAGGCTTTCATC+AGG | 0.515660 | 5.3:-41001290 | None:intergenic |
| ACAAGGCTTTCATCAGGTGT+TGG | 0.523953 | 5.3:-41001284 | None:intergenic |
| AATTCAGAAAGCTTCATCAC+TGG | 0.525241 | 5.3:+41002465 | MS.gene88296:CDS |
| ATCAGGTGTTGGAAGATTGG+TGG | 0.526275 | 5.3:-41001273 | None:intergenic |
| TCAGCACAAGAAACAACTCC+AGG | 0.529028 | 5.3:-41001051 | None:intergenic |
| TGAACCTCGTAACGCAGCCT+CGG | 0.534467 | 5.3:+41000412 | MS.gene88296:CDS |
| AGACCTGAATAAAGCAGTCA+TGG | 0.539942 | 5.3:-41000451 | None:intergenic |
| TTTGTTGAATCAGAGTGCCC+TGG | 0.544131 | 5.3:+41001033 | MS.gene88296:CDS |
| TGTTCAGGGTTGCGATGGAT+CGG | 0.545298 | 5.3:+41000912 | MS.gene88296:intron |
| TGCTGATATTCTCACAATTG+CGG | 0.553704 | 5.3:+41001068 | MS.gene88296:CDS |
| TTGACACCTTGCCATACCAA+TGG | 0.555332 | 5.3:-41002109 | None:intergenic |
| TTATGTGTTCAGGGTTGCGA+TGG | 0.568814 | 5.3:+41000907 | MS.gene88296:intron |
| CATGCAGGATCCCACACCAT+TGG | 0.575994 | 5.3:+41002093 | MS.gene88296:intron |
| AGGATCCCACACCATTGGTA+TGG | 0.577138 | 5.3:+41002098 | MS.gene88296:intron |
| ATTGGGATGTTCCTGTGGGA+AGG | 0.579787 | 5.3:+41001216 | MS.gene88296:CDS |
| AGACAATAACATAACAGCAA+TGG | 0.581171 | 5.3:+41002242 | MS.gene88296:CDS |
| ACCATATTGGGATGTTCCTG+TGG | 0.584136 | 5.3:+41001211 | MS.gene88296:CDS |
| TTATCAAGGCCTATCAGTCA+CGG | 0.585184 | 5.3:+41001328 | MS.gene88296:CDS |
| AATAAGAAACATACCGACAA+GGG | 0.588494 | 5.3:-41001360 | None:intergenic |
| TCAGTTACTATTAAAAGGCG+AGG | 0.588718 | 5.3:+41002302 | MS.gene88296:CDS |
| ACAGAATCTTTCCTTCCCAC+AGG | 0.589625 | 5.3:-41001227 | None:intergenic |
| CCCACACCATTGGTATGGCA+AGG | 0.602364 | 5.3:+41002103 | MS.gene88296:CDS |
| CCTTGCCATACCAATGGTGT+GGG | 0.603799 | 5.3:-41002103 | None:intergenic |
| CTAACAATGTCAAACACAGT+AGG | 0.608651 | 5.3:-41000362 | None:intergenic |
| CAGTTACTATTAAAAGGCGA+GGG | 0.613439 | 5.3:+41002303 | MS.gene88296:CDS |
| ACCTTGCCATACCAATGGTG+TGG | 0.635221 | 5.3:-41002104 | None:intergenic |
| ATTTGGGAATGATAGAAACA+AGG | 0.637153 | 5.3:-41001301 | None:intergenic |
| ACAACCGAGGCTGCGTTACG+AGG | 0.637956 | 5.3:-41000416 | None:intergenic |
| TAGTGATCAAGTGTTAGTTG+AGG | 0.665046 | 5.3:-41000326 | None:intergenic |
| GAAGTGAAGCCGAACAACCG+AGG | 0.665422 | 5.3:-41000429 | None:intergenic |
| TCTATTTGTCCACCAATTGG+GGG | 0.671500 | 5.3:+41002216 | MS.gene88296:CDS |
| CCATATTGGGATGTTCCTGT+GGG | 0.672124 | 5.3:+41001212 | MS.gene88296:CDS |
| TAATAAGAAACATACCGACA+AGG | 0.676698 | 5.3:-41001361 | None:intergenic |
| CAGCACAAGAAACAACTCCA+GGG | 0.694829 | 5.3:-41001050 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTAATTTACAACTT+AGG | + | chr5.3:41001378-41001397 | MS.gene88296:intron | 10.0% |
| !!! | TATTAGTTTGAAAAAAAAAA+TGG | + | chr5.3:41001567-41001586 | MS.gene88296:intron | 10.0% |
| !! | AAAAATTTCAGAAGCTAATA+TGG | + | chr5.3:41000690-41000709 | MS.gene88296:intron | 20.0% |
| !! | ATCATAGGAAAATTATATTG+TGG | + | chr5.3:41001414-41001433 | MS.gene88296:intron | 20.0% |
| !! | ATTATTTATGCAATGCAATT+TGG | - | chr5.3:41001929-41001948 | None:intergenic | 20.0% |
| !! | CAAATTTATCTCTCAATTAA+AGG | - | chr5.3:41000660-41000679 | None:intergenic | 20.0% |
| !! | CTTTAATTGAGAGATAAATT+TGG | + | chr5.3:41000658-41000677 | MS.gene88296:intron | 20.0% |
| !! | CTTTGTCTTATATAAGTTAT+TGG | + | chr5.3:41001144-41001163 | MS.gene88296:intron | 20.0% |
| !! | TTCTATCAGTTACTATTAAA+AGG | + | chr5.3:41002297-41002316 | MS.gene88296:CDS | 20.0% |
| !!! | AATATGTCTAACTTTGAAAT+AGG | - | chr5.3:41000545-41000564 | None:intergenic | 20.0% |
| !!! | AATTTTCGATCAAGAATATA+TGG | + | chr5.3:41002132-41002151 | MS.gene88296:CDS | 20.0% |
| !!! | TAATGTAGCTTTACTATATT+TGG | - | chr5.3:41000816-41000835 | None:intergenic | 20.0% |
| ! | AAACAGAAGCAATAATTACA+AGG | - | chr5.3:41000495-41000514 | None:intergenic | 25.0% |
| ! | ATCAAAATGTTGAATGAAAC+AGG | + | chr5.3:41000746-41000765 | MS.gene88296:intron | 25.0% |
| ! | ATTCCCAAATTTCTTTATCA+AGG | + | chr5.3:41001314-41001333 | MS.gene88296:CDS | 25.0% |
| ! | GAATGATCATAAATCAAAGA+AGG | - | chr5.3:41001784-41001803 | None:intergenic | 25.0% |
| ! | GCAATAATTACAAGGAAAAA+AGG | - | chr5.3:41000487-41000506 | None:intergenic | 25.0% |
| ! | TGTTTGTTCTACAAAAACAA+AGG | - | chr5.3:41001634-41001653 | None:intergenic | 25.0% |
| !! | ATTTTCTTTATCTCCTCAAT+AGG | - | chr5.3:41000866-41000885 | None:intergenic | 25.0% |
| !! | CTATATTTGGAGTAAAACTT+AGG | - | chr5.3:41000803-41000822 | None:intergenic | 25.0% |
| !!! | AATTACTTTTACAACTACCT+AGG | - | chr5.3:41002027-41002046 | None:intergenic | 25.0% |
| !!! | GGTTGTGATTTAATTTTTGA+AGG | + | chr5.3:41000711-41000730 | MS.gene88296:intron | 25.0% |
| !!! | TTTGTCCTTTGATTTTTTGT+AGG | + | chr5.3:41001181-41001200 | MS.gene88296:intron | 25.0% |
| AAACTTGATGTTATGTGTTC+AGG | + | chr5.3:41000897-41000916 | MS.gene88296:intron | 30.0% | |
| AAAGAATTGTCGAAGAGATT+AGG | - | chr5.3:41002279-41002298 | None:intergenic | 30.0% | |
| AAATCTATTTGTCCACCAAT+TGG | + | chr5.3:41002213-41002232 | MS.gene88296:CDS | 30.0% | |
| AACTTGATGTTATGTGTTCA+GGG | + | chr5.3:41000898-41000917 | MS.gene88296:intron | 30.0% | |
| AATAAGAAACATACCGACAA+GGG | - | chr5.3:41001363-41001382 | None:intergenic | 30.0% | |
| AATCTATTTGTCCACCAATT+GGG | + | chr5.3:41002214-41002233 | MS.gene88296:CDS | 30.0% | |
| AATTACACAAAACACACCAA+TGG | - | chr5.3:41001734-41001753 | None:intergenic | 30.0% | |
| AATTTATATCGCACGCAATA+AGG | - | chr5.3:41002059-41002078 | None:intergenic | 30.0% | |
| ACCAACCTACAAAAAATCAA+AGG | - | chr5.3:41001189-41001208 | None:intergenic | 30.0% | |
| AGACAATAACATAACAGCAA+TGG | + | chr5.3:41002242-41002261 | MS.gene88296:CDS | 30.0% | |
| AGGCCTTGATAAAGAAATTT+GGG | - | chr5.3:41001320-41001339 | None:intergenic | 30.0% | |
| AGTATTAGATGAACCTATTG+AGG | + | chr5.3:41000850-41000869 | MS.gene88296:intron | 30.0% | |
| ATTTGGGAATGATAGAAACA+AGG | - | chr5.3:41001304-41001323 | None:intergenic | 30.0% | |
| GATGATACATACACACTTAA+AGG | + | chr5.3:41000943-41000962 | MS.gene88296:CDS | 30.0% | |
| GGTTCATCTAATACTTTGAA+TGG | - | chr5.3:41000845-41000864 | None:intergenic | 30.0% | |
| TAATAAGAAACATACCGACA+AGG | - | chr5.3:41001364-41001383 | None:intergenic | 30.0% | |
| TAGGCCTTGATAAAGAAATT+TGG | - | chr5.3:41001321-41001340 | None:intergenic | 30.0% | |
| TCTGATTCAATGGTCAAAAT+GGG | + | chr5.3:41002432-41002451 | MS.gene88296:CDS | 30.0% | |
| TGATCATAAATCAAAGAAGG+CGG | - | chr5.3:41001781-41001800 | None:intergenic | 30.0% | |
| TGTACAAAACAATCTGTGTA+AGG | - | chr5.3:41001836-41001855 | None:intergenic | 30.0% | |
| TGTATATCTAAGAACCAATG+TGG | + | chr5.3:41000623-41000642 | MS.gene88296:intron | 30.0% | |
| TTGCAATGAAAGTCAATAAC+TGG | + | chr5.3:41001986-41002005 | MS.gene88296:intron | 30.0% | |
| ! | ATATTGTGGACTGTTTAGAT+AGG | + | chr5.3:41001428-41001447 | MS.gene88296:intron | 30.0% |
| ! | CACTGAGTTTCTATTTTCAA+GGG | + | chr5.3:41001695-41001714 | MS.gene88296:intron | 30.0% |
| ! | TCACTGAGTTTCTATTTTCA+AGG | + | chr5.3:41001694-41001713 | MS.gene88296:intron | 30.0% |
| ! | TTTTCAAACTAATAGCGATC+AGG | - | chr5.3:41001561-41001580 | None:intergenic | 30.0% |
| !! | ACATTTTAGTAGAATCGGTA+CGG | - | chr5.3:41000576-41000595 | None:intergenic | 30.0% |
| !! | ACTGAGTTTCTATTTTCAAG+GGG | + | chr5.3:41001696-41001715 | MS.gene88296:intron | 30.0% |
| !! | AGGTATTTTTATCACCACAT+TGG | - | chr5.3:41000640-41000659 | None:intergenic | 30.0% |
| !! | AGTTATTGACTTTCATTGCA+AGG | - | chr5.3:41001987-41002006 | None:intergenic | 30.0% |
| !! | TACCGATTCTACTAAAATGT+CGG | + | chr5.3:41000576-41000595 | MS.gene88296:intron | 30.0% |
| !! | TTTCAAAGCCTTTTAAAGAG+TGG | - | chr5.3:41000993-41001012 | None:intergenic | 30.0% |
| !!! | TCCTTTGATTTTTTGTAGGT+TGG | + | chr5.3:41001185-41001204 | MS.gene88296:intron | 30.0% |
| !!! | TTCGTGTGATTTTCAAGTAT+TGG | - | chr5.3:41001468-41001487 | None:intergenic | 30.0% |
| !!! | TTTGATTTTTTGTAGGTTGG+TGG | + | chr5.3:41001188-41001207 | MS.gene88296:intron | 30.0% |
| AAAATGTCGGTCATCATCTT+CGG | + | chr5.3:41000589-41000608 | MS.gene88296:intron | 35.0% | |
| AACTACCTAGGAATCTTATG+AGG | - | chr5.3:41002015-41002034 | None:intergenic | 35.0% | |
| AATCACACGAAACTACAACA+AGG | + | chr5.3:41001477-41001496 | MS.gene88296:intron | 35.0% | |
| AATTCAGAAAGCTTCATCAC+TGG | + | chr5.3:41002465-41002484 | MS.gene88296:CDS | 35.0% | |
| ACCAACATCCACTCTTTAAA+AGG | + | chr5.3:41000982-41001001 | MS.gene88296:CDS | 35.0% | |
| ATAGAAACAAGGCTTTCATC+AGG | - | chr5.3:41001293-41001312 | None:intergenic | 35.0% | |
| ATCTATTTGTCCACCAATTG+GGG | + | chr5.3:41002215-41002234 | MS.gene88296:CDS | 35.0% | |
| CAGTTACTATTAAAAGGCGA+GGG | + | chr5.3:41002303-41002322 | MS.gene88296:CDS | 35.0% | |
| CTAACAATGTCAAACACAGT+AGG | - | chr5.3:41000365-41000384 | None:intergenic | 35.0% | |
| CTACTGTGTTTGACATTGTT+AGG | + | chr5.3:41000363-41000382 | MS.gene88296:CDS | 35.0% | |
| CTCACATATGAATGAGAACA+AGG | + | chr5.3:41001670-41001689 | MS.gene88296:intron | 35.0% | |
| CTCTGATTCAATGGTCAAAA+TGG | + | chr5.3:41002431-41002450 | MS.gene88296:CDS | 35.0% | |
| GATCATAAATCAAAGAAGGC+GGG | - | chr5.3:41001780-41001799 | None:intergenic | 35.0% | |
| GTTCTCATTCATATGTGAGA+CGG | - | chr5.3:41001669-41001688 | None:intergenic | 35.0% | |
| TACCACAATAATCCTCATCT+CGG | + | chr5.3:41001876-41001895 | MS.gene88296:intron | 35.0% | |
| TAGGAAGCAAATGGAATGTT+CGG | + | chr5.3:41000382-41000401 | MS.gene88296:CDS | 35.0% | |
| TAGTGATCAAGTGTTAGTTG+AGG | - | chr5.3:41000329-41000348 | None:intergenic | 35.0% | |
| TCAGTTACTATTAAAAGGCG+AGG | + | chr5.3:41002302-41002321 | MS.gene88296:CDS | 35.0% | |
| TGACATTGTTAGGAAGCAAA+TGG | + | chr5.3:41000373-41000392 | MS.gene88296:CDS | 35.0% | |
| TGCTGATATTCTCACAATTG+CGG | + | chr5.3:41001068-41001087 | MS.gene88296:CDS | 35.0% | |
| TTGTAGAACAAACATCCATC+AGG | + | chr5.3:41001640-41001659 | MS.gene88296:intron | 35.0% | |
| ! | GGAGAAGTGTATCTTATCAT+AGG | + | chr5.3:41001399-41001418 | MS.gene88296:intron | 35.0% |
| ! | TTGAACTGATTGTCTGAGAT+TGG | - | chr5.3:41002186-41002205 | None:intergenic | 35.0% |
| ! | TTGGTGGACAAATAGATTTC+AGG | - | chr5.3:41002212-41002231 | None:intergenic | 35.0% |
| !! | GACCGACATTTTAGTAGAAT+CGG | - | chr5.3:41000581-41000600 | None:intergenic | 35.0% |
| AGACCTGAATAAAGCAGTCA+TGG | - | chr5.3:41000454-41000473 | None:intergenic | 40.0% | |
| AGTAGAATCGGTACGGTAAA+TGG | - | chr5.3:41000569-41000588 | None:intergenic | 40.0% | |
| ATTTCATTTGAGCCGAGATG+AGG | - | chr5.3:41001891-41001910 | None:intergenic | 40.0% | |
| CCAGCAATTCTCTGATTCAA+TGG | + | chr5.3:41002422-41002441 | MS.gene88296:CDS | 40.0% | |
| CCATTGAATCAGAGAATTGC+TGG | - | chr5.3:41002425-41002444 | None:intergenic | 40.0% | |
| GAAATGTACTCGAGTGTGTT+CGG | + | chr5.3:41002345-41002364 | MS.gene88296:CDS | 40.0% | |
| GCTTCATCACTGGAGAAATT+AGG | + | chr5.3:41002475-41002494 | MS.gene88296:CDS | 40.0% | |
| GGTTTCCTCATAAGATTCCT+AGG | + | chr5.3:41002007-41002026 | MS.gene88296:intron | 40.0% | |
| TCTATTTGTCCACCAATTGG+GGG | + | chr5.3:41002216-41002235 | MS.gene88296:CDS | 40.0% | |
| TGCAAGGCAATGTGAAGAAA+TGG | - | chr5.3:41001971-41001990 | None:intergenic | 40.0% | |
| TGTCTCACTCATTAAGACAG+AGG | - | chr5.3:41001534-41001553 | None:intergenic | 40.0% | |
| TTATCAAGGCCTATCAGTCA+CGG | + | chr5.3:41001328-41001347 | MS.gene88296:CDS | 40.0% | |
| TTTCTGATCACAACACATGC+AGG | + | chr5.3:41002078-41002097 | MS.gene88296:intron | 40.0% | |
| ! | CAGAGGACTATGAGCTTTTT+CGG | - | chr5.3:41001517-41001536 | None:intergenic | 40.0% |
| ! | CTTCCATGACTGCTTTATTC+AGG | + | chr5.3:41000448-41000467 | MS.gene88296:CDS | 40.0% |
| ! | TTGTGGACTGTTTAGATAGG+TGG | + | chr5.3:41001431-41001450 | MS.gene88296:intron | 40.0% |
| !! | GAGTTTCTATTTTCAAGGGG+CGG | + | chr5.3:41001699-41001718 | MS.gene88296:intron | 40.0% |
| !! | GCCTTTTAAAGAGTGGATGT+TGG | - | chr5.3:41000986-41001005 | None:intergenic | 40.0% |
| !! | TTCATCAGGTGTTGGAAGAT+TGG | - | chr5.3:41001279-41001298 | None:intergenic | 40.0% |
| ACAAGGCTTTCATCAGGTGT+TGG | - | chr5.3:41001287-41001306 | None:intergenic | 45.0% | |
| ACAGAATCTTTCCTTCCCAC+AGG | - | chr5.3:41001230-41001249 | None:intergenic | 45.0% | |
| ACCATATTGGGATGTTCCTG+TGG | + | chr5.3:41001211-41001230 | MS.gene88296:CDS | 45.0% | |
| AGCCGAGATGAGGATTATTG+TGG | - | chr5.3:41001881-41001900 | None:intergenic | 45.0% | |
| CAACCATATCCGTGACTGAT+AGG | - | chr5.3:41001340-41001359 | None:intergenic | 45.0% | |
| CAGCACAAGAAACAACTCCA+GGG | - | chr5.3:41001053-41001072 | None:intergenic | 45.0% | |
| CCATATTGGGATGTTCCTGT+GGG | + | chr5.3:41001212-41001231 | MS.gene88296:CDS | 45.0% | |
| GGCTAGAGATGCTGTAATTC+TGG | + | chr5.3:41001089-41001108 | MS.gene88296:CDS | 45.0% | |
| TCAGCACAAGAAACAACTCC+AGG | - | chr5.3:41001054-41001073 | None:intergenic | 45.0% | |
| TTATGTGTTCAGGGTTGCGA+TGG | + | chr5.3:41000907-41000926 | MS.gene88296:intron | 45.0% | |
| TTATTGTCTCCTCCCCCAAT+TGG | - | chr5.3:41002231-41002250 | None:intergenic | 45.0% | |
| TTGACACCTTGCCATACCAA+TGG | - | chr5.3:41002112-41002131 | None:intergenic | 45.0% | |
| ! | TTTGTTGAATCAGAGTGCCC+TGG | + | chr5.3:41001033-41001052 | MS.gene88296:CDS | 45.0% |
| !! | ATCAGGTGTTGGAAGATTGG+TGG | - | chr5.3:41001276-41001295 | None:intergenic | 45.0% |
| !! | GTAGGTTGGTGGACCATATT+GGG | + | chr5.3:41001199-41001218 | MS.gene88296:intron | 45.0% |
| !! | TGTAGGTTGGTGGACCATAT+TGG | + | chr5.3:41001198-41001217 | MS.gene88296:intron | 45.0% |
| ACCTTGCCATACCAATGGTG+TGG | - | chr5.3:41002107-41002126 | None:intergenic | 50.0% | |
| ACGGATATGGTTGCCCTTGT+CGG | + | chr5.3:41001347-41001366 | MS.gene88296:CDS | 50.0% | |
| AGGATCCCACACCATTGGTA+TGG | + | chr5.3:41002098-41002117 | MS.gene88296:intron | 50.0% | |
| AGGCCTATCAGTCACGGATA+TGG | + | chr5.3:41001334-41001353 | MS.gene88296:CDS | 50.0% | |
| ATTGGGATGTTCCTGTGGGA+AGG | + | chr5.3:41001216-41001235 | MS.gene88296:CDS | 50.0% | |
| ATTTGTCCACCAATTGGGGG+AGG | + | chr5.3:41002219-41002238 | MS.gene88296:CDS | 50.0% | |
| CCCACAGGAACATCCCAATA+TGG | - | chr5.3:41001215-41001234 | None:intergenic | 50.0% | |
| CCTTGCCATACCAATGGTGT+GGG | - | chr5.3:41002106-41002125 | None:intergenic | 50.0% | |
| TATGTGAGACGGTGACCTGA+TGG | - | chr5.3:41001658-41001677 | None:intergenic | 50.0% | |
| TGTTCAGGGTTGCGATGGAT+CGG | + | chr5.3:41000912-41000931 | MS.gene88296:intron | 50.0% | |
| CATGCAGGATCCCACACCAT+TGG | + | chr5.3:41002093-41002112 | MS.gene88296:intron | 55.0% | |
| CCCACACCATTGGTATGGCA+AGG | + | chr5.3:41002103-41002122 | MS.gene88296:CDS | 55.0% | |
| GAAGTGAAGCCGAACAACCG+AGG | - | chr5.3:41000432-41000451 | None:intergenic | 55.0% | |
| GGGGCGGCATTATTCACCAT+TGG | + | chr5.3:41001715-41001734 | MS.gene88296:intron | 55.0% | |
| GTAACGCAGCCTCGGTTGTT+CGG | + | chr5.3:41000420-41000439 | MS.gene88296:CDS | 55.0% | |
| TGAACCTCGTAACGCAGCCT+CGG | + | chr5.3:41000412-41000431 | MS.gene88296:CDS | 55.0% | |
| TTGTCTCCTCCCCCAATTGG+TGG | - | chr5.3:41002228-41002247 | None:intergenic | 55.0% | |
| ACAACCGAGGCTGCGTTACG+AGG | - | chr5.3:41000419-41000438 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 41000310 | 41002524 | 41000310 | ID=MS.gene88296 |
| chr5.3 | mRNA | 41000310 | 41002524 | 41000310 | ID=MS.gene88296.t1;Parent=MS.gene88296 |
| chr5.3 | exon | 41000310 | 41000469 | 41000310 | ID=MS.gene88296.t1.exon1;Parent=MS.gene88296.t1 |
| chr5.3 | CDS | 41000310 | 41000469 | 41000310 | ID=cds.MS.gene88296.t1;Parent=MS.gene88296.t1 |
| chr5.3 | exon | 41000919 | 41001110 | 41000919 | ID=MS.gene88296.t1.exon2;Parent=MS.gene88296.t1 |
| chr5.3 | CDS | 41000919 | 41001110 | 41000919 | ID=cds.MS.gene88296.t1;Parent=MS.gene88296.t1 |
| chr5.3 | exon | 41001203 | 41001368 | 41001203 | ID=MS.gene88296.t1.exon3;Parent=MS.gene88296.t1 |
| chr5.3 | CDS | 41001203 | 41001368 | 41001203 | ID=cds.MS.gene88296.t1;Parent=MS.gene88296.t1 |
| chr5.3 | exon | 41002100 | 41002524 | 41002100 | ID=MS.gene88296.t1.exon4;Parent=MS.gene88296.t1 |
| chr5.3 | CDS | 41002100 | 41002524 | 41002100 | ID=cds.MS.gene88296.t1;Parent=MS.gene88296.t1 |
| Gene Sequence |
| Protein sequence |
