Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053957.t1 | XP_013453889.1 | 98.1 | 313 | 6 | 0 | 1 | 313 | 26 | 338 | 4.40E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053957.t1 | Q96519 | 71.7 | 307 | 86 | 1 | 8 | 313 | 30 | 336 | 4.4e-132 | 472.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053957.t1 | A0A072UQ08 | 98.1 | 313 | 6 | 0 | 1 | 313 | 26 | 338 | 3.2e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053957 | MS.gene053958 | 0.965355 | 1.69E-124 | -1.69E-46 |
| MS.gene053957 | MS.gene053961 | 0.949318 | 1.62E-107 | -1.69E-46 |
| MS.gene053957 | MS.gene058015 | 0.861486 | 9.92E-64 | -1.69E-46 |
| MS.gene053957 | MS.gene068822 | 0.932381 | 9.27E-95 | -1.69E-46 |
| MS.gene053957 | MS.gene068824 | 0.84357 | 1.29E-58 | -1.69E-46 |
| MS.gene053957 | MS.gene068826 | 0.965419 | 1.40E-124 | -1.69E-46 |
| MS.gene053957 | MS.gene09819 | 0.829316 | 5.51E-55 | -1.69E-46 |
| MS.gene053957 | MS.gene22491 | 0.804246 | 2.37E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene28537 | 0.840303 | 9.43E-58 | -1.69E-46 |
| MS.gene053957 | MS.gene43896 | 0.829266 | 5.67E-55 | -1.69E-46 |
| MS.gene053957 | MS.gene44966 | 0.83623 | 1.06E-56 | -1.69E-46 |
| MS.gene053957 | MS.gene47902 | 0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene52155 | 0.842856 | 2.00E-58 | -1.69E-46 |
| MS.gene053957 | MS.gene53428 | 0.802014 | 6.86E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene53429 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene053957 | MS.gene58766 | 0.800603 | 1.33E-48 | -1.69E-46 |
| MS.gene053957 | MS.gene59144 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene62991 | 0.802719 | 4.91E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene67504 | 0.806117 | 9.61E-50 | -1.69E-46 |
| MS.gene053957 | MS.gene67684 | 0.813114 | 3.01E-51 | -1.69E-46 |
| MS.gene053957 | MS.gene68280 | 0.80945 | 1.88E-50 | -1.69E-46 |
| MS.gene053957 | MS.gene74343 | 0.823305 | 1.49E-53 | -1.69E-46 |
| MS.gene053957 | MS.gene76405 | 0.80605 | 9.93E-50 | -1.69E-46 |
| MS.gene053957 | MS.gene79116 | 0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene053957 | MS.gene83234 | 0.8071 | 5.96E-50 | -1.69E-46 |
| MS.gene053957 | MS.gene86677 | 0.826289 | 2.94E-54 | -1.69E-46 |
| MS.gene053957 | MS.gene87357 | 0.847783 | 9.29E-60 | -1.69E-46 |
| MS.gene053957 | MS.gene88084 | 0.83445 | 2.98E-56 | -1.69E-46 |
| MS.gene053957 | MS.gene88296 | 0.96667 | 3.13E-126 | -1.69E-46 |
| MS.gene053957 | MS.gene93357 | 0.830149 | 3.46E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGATTCAATGGTCAAAA+TGG | 0.150346 | 5.2:+43210034 | MS.gene053957:CDS |
| TAGGCCTTGATAAAGAAATT+TGG | 0.197512 | 5.2:-43208921 | None:intergenic |
| GATGATACATACACACTTAA+AGG | 0.209734 | 5.2:+43208546 | MS.gene053957:CDS |
| TTCTATCAGTTACTATTAAA+AGG | 0.244929 | 5.2:+43209900 | MS.gene053957:CDS |
| CTTCCATGACTGCTTTATTC+AGG | 0.245006 | 5.2:+43208051 | MS.gene053957:CDS |
| TTGGTGGACAAATAGATTTC+AGG | 0.248040 | 5.2:-43209812 | None:intergenic |
| ACCAACATCCACTCTTTAAA+AGG | 0.265822 | 5.2:+43208585 | MS.gene053957:CDS |
| GCTTCATCACTGGAGAAATT+AGG | 0.312437 | 5.2:+43210078 | MS.gene053957:CDS |
| AAATCTATTTGTCCACCAAT+TGG | 0.335126 | 5.2:+43209816 | MS.gene053957:CDS |
| TTCATCAGGTGTTGGAAGAT+TGG | 0.344913 | 5.2:-43208879 | None:intergenic |
| CCATTGAATCAGAGAATTGC+TGG | 0.348685 | 5.2:-43210025 | None:intergenic |
| AGGCCTTGATAAAGAAATTT+GGG | 0.352606 | 5.2:-43208920 | None:intergenic |
| GGCTAGAGATGCTGTAATTC+TGG | 0.365262 | 5.2:+43208692 | MS.gene053957:CDS |
| AATCTATTTGTCCACCAATT+GGG | 0.367894 | 5.2:+43209817 | MS.gene053957:CDS |
| TGTAGGTTGGTGGACCATAT+TGG | 0.381231 | 5.2:+43208801 | MS.gene053957:intron |
| TTGAACTGATTGTCTGAGAT+TGG | 0.384305 | 5.2:-43209786 | None:intergenic |
| ATTCCCAAATTTCTTTATCA+AGG | 0.393262 | 5.2:+43208917 | MS.gene053957:CDS |
| CTACTGTGTTTGACATTGTT+AGG | 0.395693 | 5.2:+43207966 | MS.gene053957:CDS |
| GTAGGTTGGTGGACCATATT+GGG | 0.400494 | 5.2:+43208802 | MS.gene053957:intron |
| CCAGCAATTCTCTGATTCAA+TGG | 0.417000 | 5.2:+43210025 | MS.gene053957:CDS |
| AGGCCTATCAGTCACGGATA+TGG | 0.421834 | 5.2:+43208937 | MS.gene053957:CDS |
| CAACCATATCCGTGACTGAT+AGG | 0.423843 | 5.2:-43208940 | None:intergenic |
| ACGGATATGGTTGCCCTTGT+CGG | 0.453404 | 5.2:+43208950 | MS.gene053957:CDS |
| AAAGAATTGTCGAAGAGATT+AGG | 0.456399 | 5.2:-43209879 | None:intergenic |
| GTAACGCAGCCTCGGTTGTT+CGG | 0.456843 | 5.2:+43208023 | MS.gene053957:CDS |
| CCCACAGGAACATCCCAATA+TGG | 0.467663 | 5.2:-43208815 | None:intergenic |
| TCTGATTCAATGGTCAAAAT+GGG | 0.468708 | 5.2:+43210035 | MS.gene053957:CDS |
| TGACATTGTTAGGAAGCAAA+TGG | 0.473769 | 5.2:+43207976 | MS.gene053957:CDS |
| ATCTATTTGTCCACCAATTG+GGG | 0.476877 | 5.2:+43209818 | MS.gene053957:CDS |
| GAAATGTACTCGAGTGTGTT+CGG | 0.477719 | 5.2:+43209948 | MS.gene053957:CDS |
| TAGGAAGCAAATGGAATGTT+CGG | 0.486422 | 5.2:+43207985 | MS.gene053957:CDS |
| ATAGAAACAAGGCTTTCATC+AGG | 0.515660 | 5.2:-43208893 | None:intergenic |
| ACAAGGCTTTCATCAGGTGT+TGG | 0.523953 | 5.2:-43208887 | None:intergenic |
| AATTCAGAAAGCTTCATCAC+TGG | 0.525241 | 5.2:+43210068 | MS.gene053957:CDS |
| ATCAGGTGTTGGAAGATTGG+TGG | 0.526275 | 5.2:-43208876 | None:intergenic |
| TCAGCACAAGAAACAACTCC+AGG | 0.529028 | 5.2:-43208654 | None:intergenic |
| TGAACCTCGTAACGCAGCCT+CGG | 0.534467 | 5.2:+43208015 | MS.gene053957:CDS |
| AGACCTGAATAAAGCAGTCA+TGG | 0.539942 | 5.2:-43208054 | None:intergenic |
| TTTGTTGAATCAGAGTGCCC+TGG | 0.544131 | 5.2:+43208636 | MS.gene053957:CDS |
| TGTTCAGGGTTGCGATGGAT+CGG | 0.545298 | 5.2:+43208515 | MS.gene053957:intron |
| TGCTGATATTCTCACAATTG+CGG | 0.553704 | 5.2:+43208671 | MS.gene053957:CDS |
| TTGACACCTTGCCATACCAA+TGG | 0.555332 | 5.2:-43209712 | None:intergenic |
| TTATGTGTTCAGGGTTGCGA+TGG | 0.568814 | 5.2:+43208510 | MS.gene053957:intron |
| CATGCAGGATCCCACACCAT+TGG | 0.575994 | 5.2:+43209696 | MS.gene053957:intron |
| AGGATCCCACACCATTGGTA+TGG | 0.577138 | 5.2:+43209701 | MS.gene053957:intron |
| ATTGGGATGTTCCTGTGGGA+AGG | 0.579787 | 5.2:+43208819 | MS.gene053957:CDS |
| AGACAATAACATAACAGCAA+TGG | 0.581171 | 5.2:+43209845 | MS.gene053957:CDS |
| ACCATATTGGGATGTTCCTG+TGG | 0.584136 | 5.2:+43208814 | MS.gene053957:CDS |
| TTATCAAGGCCTATCAGTCA+CGG | 0.585184 | 5.2:+43208931 | MS.gene053957:CDS |
| AATAAGAAACATACCGACAA+GGG | 0.588494 | 5.2:-43208963 | None:intergenic |
| TCAGTTACTATTAAAAGGCG+AGG | 0.588718 | 5.2:+43209905 | MS.gene053957:CDS |
| ACAGAATCTTTCCTTCCCAC+AGG | 0.589625 | 5.2:-43208830 | None:intergenic |
| CCCACACCATTGGTATGGCA+AGG | 0.602364 | 5.2:+43209706 | MS.gene053957:CDS |
| CCTTGCCATACCAATGGTGT+GGG | 0.603799 | 5.2:-43209706 | None:intergenic |
| CTAACAATGTCAAACACAGT+AGG | 0.608651 | 5.2:-43207965 | None:intergenic |
| CAGTTACTATTAAAAGGCGA+GGG | 0.613439 | 5.2:+43209906 | MS.gene053957:CDS |
| ACCTTGCCATACCAATGGTG+TGG | 0.635221 | 5.2:-43209707 | None:intergenic |
| ATTTGGGAATGATAGAAACA+AGG | 0.637153 | 5.2:-43208904 | None:intergenic |
| ACAACCGAGGCTGCGTTACG+AGG | 0.637956 | 5.2:-43208019 | None:intergenic |
| TAGTGATCAAGTGTTAGTTG+AGG | 0.665046 | 5.2:-43207929 | None:intergenic |
| GAAGTGAAGCCGAACAACCG+AGG | 0.665422 | 5.2:-43208032 | None:intergenic |
| TCTATTTGTCCACCAATTGG+GGG | 0.671500 | 5.2:+43209819 | MS.gene053957:CDS |
| CCATATTGGGATGTTCCTGT+GGG | 0.672124 | 5.2:+43208815 | MS.gene053957:CDS |
| TAATAAGAAACATACCGACA+AGG | 0.676698 | 5.2:-43208964 | None:intergenic |
| CAGCACAAGAAACAACTCCA+GGG | 0.694829 | 5.2:-43208653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTAATTTACAACTT+AGG | + | chr5.2:43208981-43209000 | MS.gene053957:intron | 10.0% |
| !!! | TATTAGTTTGAAAAAAAAAA+TGG | + | chr5.2:43209170-43209189 | MS.gene053957:intron | 10.0% |
| !! | AAAAATTTCAGAAGCTAATA+TGG | + | chr5.2:43208293-43208312 | MS.gene053957:intron | 20.0% |
| !! | ATCATAGGAAAATTATATTG+TGG | + | chr5.2:43209017-43209036 | MS.gene053957:intron | 20.0% |
| !! | ATTATTTATGCAATGCAATT+TGG | - | chr5.2:43209532-43209551 | None:intergenic | 20.0% |
| !! | CAAATTTATCTCTCAATTAA+AGG | - | chr5.2:43208263-43208282 | None:intergenic | 20.0% |
| !! | CTTTAATTGAGAGATAAATT+TGG | + | chr5.2:43208261-43208280 | MS.gene053957:intron | 20.0% |
| !! | CTTTGTCTTATATAAGTTAT+TGG | + | chr5.2:43208747-43208766 | MS.gene053957:intron | 20.0% |
| !! | TTCTATCAGTTACTATTAAA+AGG | + | chr5.2:43209900-43209919 | MS.gene053957:CDS | 20.0% |
| !!! | AATATGTCTAACTTTGAAAT+AGG | - | chr5.2:43208148-43208167 | None:intergenic | 20.0% |
| !!! | AATTTTCGATCAAGAATATA+TGG | + | chr5.2:43209735-43209754 | MS.gene053957:CDS | 20.0% |
| !!! | TAATGTAGCTTTACTATATT+TGG | - | chr5.2:43208419-43208438 | None:intergenic | 20.0% |
| ! | AAACAGAAGCAATAATTACA+AGG | - | chr5.2:43208098-43208117 | None:intergenic | 25.0% |
| ! | ATCAAAATGTTGAATGAAAC+AGG | + | chr5.2:43208349-43208368 | MS.gene053957:intron | 25.0% |
| ! | ATTCCCAAATTTCTTTATCA+AGG | + | chr5.2:43208917-43208936 | MS.gene053957:CDS | 25.0% |
| ! | GAATGATCATAAATCAAAGA+AGG | - | chr5.2:43209387-43209406 | None:intergenic | 25.0% |
| ! | GCAATAATTACAAGGAAAAA+AGG | - | chr5.2:43208090-43208109 | None:intergenic | 25.0% |
| ! | TGTTTGTTCTACAAAAACAA+AGG | - | chr5.2:43209237-43209256 | None:intergenic | 25.0% |
| !! | ATTTTCTTTATCTCCTCAAT+AGG | - | chr5.2:43208469-43208488 | None:intergenic | 25.0% |
| !! | CTATATTTGGAGTAAAACTT+AGG | - | chr5.2:43208406-43208425 | None:intergenic | 25.0% |
| !!! | AATTACTTTTACAACTACCT+AGG | - | chr5.2:43209630-43209649 | None:intergenic | 25.0% |
| !!! | GGTTGTGATTTAATTTTTGA+AGG | + | chr5.2:43208314-43208333 | MS.gene053957:intron | 25.0% |
| !!! | TTTGTCCTTTGATTTTTTGT+AGG | + | chr5.2:43208784-43208803 | MS.gene053957:intron | 25.0% |
| AAACTTGATGTTATGTGTTC+AGG | + | chr5.2:43208500-43208519 | MS.gene053957:intron | 30.0% | |
| AAAGAATTGTCGAAGAGATT+AGG | - | chr5.2:43209882-43209901 | None:intergenic | 30.0% | |
| AAATCTATTTGTCCACCAAT+TGG | + | chr5.2:43209816-43209835 | MS.gene053957:CDS | 30.0% | |
| AACTTGATGTTATGTGTTCA+GGG | + | chr5.2:43208501-43208520 | MS.gene053957:intron | 30.0% | |
| AATAAGAAACATACCGACAA+GGG | - | chr5.2:43208966-43208985 | None:intergenic | 30.0% | |
| AATCTATTTGTCCACCAATT+GGG | + | chr5.2:43209817-43209836 | MS.gene053957:CDS | 30.0% | |
| AATTACACAAAACACACCAA+TGG | - | chr5.2:43209337-43209356 | None:intergenic | 30.0% | |
| AATTTATATCGCACGCAATA+AGG | - | chr5.2:43209662-43209681 | None:intergenic | 30.0% | |
| ACCAACCTACAAAAAATCAA+AGG | - | chr5.2:43208792-43208811 | None:intergenic | 30.0% | |
| AGACAATAACATAACAGCAA+TGG | + | chr5.2:43209845-43209864 | MS.gene053957:CDS | 30.0% | |
| AGGCCTTGATAAAGAAATTT+GGG | - | chr5.2:43208923-43208942 | None:intergenic | 30.0% | |
| AGTATTAGATGAACCTATTG+AGG | + | chr5.2:43208453-43208472 | MS.gene053957:intron | 30.0% | |
| ATTTGGGAATGATAGAAACA+AGG | - | chr5.2:43208907-43208926 | None:intergenic | 30.0% | |
| GATGATACATACACACTTAA+AGG | + | chr5.2:43208546-43208565 | MS.gene053957:CDS | 30.0% | |
| GGTTCATCTAATACTTTGAA+TGG | - | chr5.2:43208448-43208467 | None:intergenic | 30.0% | |
| TAATAAGAAACATACCGACA+AGG | - | chr5.2:43208967-43208986 | None:intergenic | 30.0% | |
| TAGGCCTTGATAAAGAAATT+TGG | - | chr5.2:43208924-43208943 | None:intergenic | 30.0% | |
| TCTGATTCAATGGTCAAAAT+GGG | + | chr5.2:43210035-43210054 | MS.gene053957:CDS | 30.0% | |
| TGATCATAAATCAAAGAAGG+CGG | - | chr5.2:43209384-43209403 | None:intergenic | 30.0% | |
| TGTACAAAACAATCTGTGTA+AGG | - | chr5.2:43209439-43209458 | None:intergenic | 30.0% | |
| TGTATATCTAAGAACCAATG+TGG | + | chr5.2:43208226-43208245 | MS.gene053957:intron | 30.0% | |
| TTGCAATGAAAGTCAATAAC+TGG | + | chr5.2:43209589-43209608 | MS.gene053957:intron | 30.0% | |
| ! | ATATTGTGGACTGTTTAGAT+AGG | + | chr5.2:43209031-43209050 | MS.gene053957:intron | 30.0% |
| ! | CACTGAGTTTCTATTTTCAA+GGG | + | chr5.2:43209298-43209317 | MS.gene053957:intron | 30.0% |
| ! | TCACTGAGTTTCTATTTTCA+AGG | + | chr5.2:43209297-43209316 | MS.gene053957:intron | 30.0% |
| ! | TTTTCAAACTAATAGCGATC+AGG | - | chr5.2:43209164-43209183 | None:intergenic | 30.0% |
| !! | ACATTTTAGTAGAATCGGTA+CGG | - | chr5.2:43208179-43208198 | None:intergenic | 30.0% |
| !! | ACTGAGTTTCTATTTTCAAG+GGG | + | chr5.2:43209299-43209318 | MS.gene053957:intron | 30.0% |
| !! | AGGTATTTTTATCACCACAT+TGG | - | chr5.2:43208243-43208262 | None:intergenic | 30.0% |
| !! | AGTTATTGACTTTCATTGCA+AGG | - | chr5.2:43209590-43209609 | None:intergenic | 30.0% |
| !! | TACCGATTCTACTAAAATGT+CGG | + | chr5.2:43208179-43208198 | MS.gene053957:intron | 30.0% |
| !! | TTTCAAAGCCTTTTAAAGAG+TGG | - | chr5.2:43208596-43208615 | None:intergenic | 30.0% |
| !!! | TCCTTTGATTTTTTGTAGGT+TGG | + | chr5.2:43208788-43208807 | MS.gene053957:intron | 30.0% |
| !!! | TTCGTGTGATTTTCAAGTAT+TGG | - | chr5.2:43209071-43209090 | None:intergenic | 30.0% |
| !!! | TTTGATTTTTTGTAGGTTGG+TGG | + | chr5.2:43208791-43208810 | MS.gene053957:intron | 30.0% |
| AAAATGTCGGTCATCATCTT+CGG | + | chr5.2:43208192-43208211 | MS.gene053957:intron | 35.0% | |
| AACTACCTAGGAATCTTATG+AGG | - | chr5.2:43209618-43209637 | None:intergenic | 35.0% | |
| AATCACACGAAACTACAACA+AGG | + | chr5.2:43209080-43209099 | MS.gene053957:intron | 35.0% | |
| AATTCAGAAAGCTTCATCAC+TGG | + | chr5.2:43210068-43210087 | MS.gene053957:CDS | 35.0% | |
| ACCAACATCCACTCTTTAAA+AGG | + | chr5.2:43208585-43208604 | MS.gene053957:CDS | 35.0% | |
| ATAGAAACAAGGCTTTCATC+AGG | - | chr5.2:43208896-43208915 | None:intergenic | 35.0% | |
| ATCTATTTGTCCACCAATTG+GGG | + | chr5.2:43209818-43209837 | MS.gene053957:CDS | 35.0% | |
| CAGTTACTATTAAAAGGCGA+GGG | + | chr5.2:43209906-43209925 | MS.gene053957:CDS | 35.0% | |
| CTAACAATGTCAAACACAGT+AGG | - | chr5.2:43207968-43207987 | None:intergenic | 35.0% | |
| CTACTGTGTTTGACATTGTT+AGG | + | chr5.2:43207966-43207985 | MS.gene053957:CDS | 35.0% | |
| CTCACATATGAATGAGAACA+AGG | + | chr5.2:43209273-43209292 | MS.gene053957:intron | 35.0% | |
| CTCTGATTCAATGGTCAAAA+TGG | + | chr5.2:43210034-43210053 | MS.gene053957:CDS | 35.0% | |
| GATCATAAATCAAAGAAGGC+GGG | - | chr5.2:43209383-43209402 | None:intergenic | 35.0% | |
| GTTCTCATTCATATGTGAGA+CGG | - | chr5.2:43209272-43209291 | None:intergenic | 35.0% | |
| TACCACAATAATCCTCATCT+CGG | + | chr5.2:43209479-43209498 | MS.gene053957:intron | 35.0% | |
| TAGGAAGCAAATGGAATGTT+CGG | + | chr5.2:43207985-43208004 | MS.gene053957:CDS | 35.0% | |
| TAGTGATCAAGTGTTAGTTG+AGG | - | chr5.2:43207932-43207951 | None:intergenic | 35.0% | |
| TCAGTTACTATTAAAAGGCG+AGG | + | chr5.2:43209905-43209924 | MS.gene053957:CDS | 35.0% | |
| TGACATTGTTAGGAAGCAAA+TGG | + | chr5.2:43207976-43207995 | MS.gene053957:CDS | 35.0% | |
| TGCTGATATTCTCACAATTG+CGG | + | chr5.2:43208671-43208690 | MS.gene053957:CDS | 35.0% | |
| TTGTAGAACAAACATCCATC+AGG | + | chr5.2:43209243-43209262 | MS.gene053957:intron | 35.0% | |
| ! | GGAGAAGTGTATCTTATCAT+AGG | + | chr5.2:43209002-43209021 | MS.gene053957:intron | 35.0% |
| ! | TTGAACTGATTGTCTGAGAT+TGG | - | chr5.2:43209789-43209808 | None:intergenic | 35.0% |
| ! | TTGGTGGACAAATAGATTTC+AGG | - | chr5.2:43209815-43209834 | None:intergenic | 35.0% |
| !! | GACCGACATTTTAGTAGAAT+CGG | - | chr5.2:43208184-43208203 | None:intergenic | 35.0% |
| AGACCTGAATAAAGCAGTCA+TGG | - | chr5.2:43208057-43208076 | None:intergenic | 40.0% | |
| AGTAGAATCGGTACGGTAAA+TGG | - | chr5.2:43208172-43208191 | None:intergenic | 40.0% | |
| ATTTCATTTGAGCCGAGATG+AGG | - | chr5.2:43209494-43209513 | None:intergenic | 40.0% | |
| CCAGCAATTCTCTGATTCAA+TGG | + | chr5.2:43210025-43210044 | MS.gene053957:CDS | 40.0% | |
| CCATTGAATCAGAGAATTGC+TGG | - | chr5.2:43210028-43210047 | None:intergenic | 40.0% | |
| GAAATGTACTCGAGTGTGTT+CGG | + | chr5.2:43209948-43209967 | MS.gene053957:CDS | 40.0% | |
| GCTTCATCACTGGAGAAATT+AGG | + | chr5.2:43210078-43210097 | MS.gene053957:CDS | 40.0% | |
| GGTTTCCTCATAAGATTCCT+AGG | + | chr5.2:43209610-43209629 | MS.gene053957:intron | 40.0% | |
| TCTATTTGTCCACCAATTGG+GGG | + | chr5.2:43209819-43209838 | MS.gene053957:CDS | 40.0% | |
| TGCAAGGCAATGTGAAGAAA+TGG | - | chr5.2:43209574-43209593 | None:intergenic | 40.0% | |
| TGTCTCACTCATTAAGACAG+AGG | - | chr5.2:43209137-43209156 | None:intergenic | 40.0% | |
| TTATCAAGGCCTATCAGTCA+CGG | + | chr5.2:43208931-43208950 | MS.gene053957:CDS | 40.0% | |
| TTTCTGATCACAACACATGC+AGG | + | chr5.2:43209681-43209700 | MS.gene053957:intron | 40.0% | |
| ! | CAGAGGACTATGAGCTTTTT+CGG | - | chr5.2:43209120-43209139 | None:intergenic | 40.0% |
| ! | CTTCCATGACTGCTTTATTC+AGG | + | chr5.2:43208051-43208070 | MS.gene053957:CDS | 40.0% |
| ! | TTGTGGACTGTTTAGATAGG+TGG | + | chr5.2:43209034-43209053 | MS.gene053957:intron | 40.0% |
| !! | GAGTTTCTATTTTCAAGGGG+CGG | + | chr5.2:43209302-43209321 | MS.gene053957:intron | 40.0% |
| !! | GCCTTTTAAAGAGTGGATGT+TGG | - | chr5.2:43208589-43208608 | None:intergenic | 40.0% |
| !! | TTCATCAGGTGTTGGAAGAT+TGG | - | chr5.2:43208882-43208901 | None:intergenic | 40.0% |
| ACAAGGCTTTCATCAGGTGT+TGG | - | chr5.2:43208890-43208909 | None:intergenic | 45.0% | |
| ACAGAATCTTTCCTTCCCAC+AGG | - | chr5.2:43208833-43208852 | None:intergenic | 45.0% | |
| ACCATATTGGGATGTTCCTG+TGG | + | chr5.2:43208814-43208833 | MS.gene053957:CDS | 45.0% | |
| AGCCGAGATGAGGATTATTG+TGG | - | chr5.2:43209484-43209503 | None:intergenic | 45.0% | |
| CAACCATATCCGTGACTGAT+AGG | - | chr5.2:43208943-43208962 | None:intergenic | 45.0% | |
| CAGCACAAGAAACAACTCCA+GGG | - | chr5.2:43208656-43208675 | None:intergenic | 45.0% | |
| CCATATTGGGATGTTCCTGT+GGG | + | chr5.2:43208815-43208834 | MS.gene053957:CDS | 45.0% | |
| GGCTAGAGATGCTGTAATTC+TGG | + | chr5.2:43208692-43208711 | MS.gene053957:CDS | 45.0% | |
| TCAGCACAAGAAACAACTCC+AGG | - | chr5.2:43208657-43208676 | None:intergenic | 45.0% | |
| TTATGTGTTCAGGGTTGCGA+TGG | + | chr5.2:43208510-43208529 | MS.gene053957:intron | 45.0% | |
| TTATTGTCTCCTCCCCCAAT+TGG | - | chr5.2:43209834-43209853 | None:intergenic | 45.0% | |
| TTGACACCTTGCCATACCAA+TGG | - | chr5.2:43209715-43209734 | None:intergenic | 45.0% | |
| ! | TTTGTTGAATCAGAGTGCCC+TGG | + | chr5.2:43208636-43208655 | MS.gene053957:CDS | 45.0% |
| !! | ATCAGGTGTTGGAAGATTGG+TGG | - | chr5.2:43208879-43208898 | None:intergenic | 45.0% |
| !! | GTAGGTTGGTGGACCATATT+GGG | + | chr5.2:43208802-43208821 | MS.gene053957:intron | 45.0% |
| !! | TGTAGGTTGGTGGACCATAT+TGG | + | chr5.2:43208801-43208820 | MS.gene053957:intron | 45.0% |
| ACCTTGCCATACCAATGGTG+TGG | - | chr5.2:43209710-43209729 | None:intergenic | 50.0% | |
| ACGGATATGGTTGCCCTTGT+CGG | + | chr5.2:43208950-43208969 | MS.gene053957:CDS | 50.0% | |
| AGGATCCCACACCATTGGTA+TGG | + | chr5.2:43209701-43209720 | MS.gene053957:intron | 50.0% | |
| AGGCCTATCAGTCACGGATA+TGG | + | chr5.2:43208937-43208956 | MS.gene053957:CDS | 50.0% | |
| ATTGGGATGTTCCTGTGGGA+AGG | + | chr5.2:43208819-43208838 | MS.gene053957:CDS | 50.0% | |
| ATTTGTCCACCAATTGGGGG+AGG | + | chr5.2:43209822-43209841 | MS.gene053957:CDS | 50.0% | |
| CCCACAGGAACATCCCAATA+TGG | - | chr5.2:43208818-43208837 | None:intergenic | 50.0% | |
| CCTTGCCATACCAATGGTGT+GGG | - | chr5.2:43209709-43209728 | None:intergenic | 50.0% | |
| TATGTGAGACGGTGACCTGA+TGG | - | chr5.2:43209261-43209280 | None:intergenic | 50.0% | |
| TGTTCAGGGTTGCGATGGAT+CGG | + | chr5.2:43208515-43208534 | MS.gene053957:intron | 50.0% | |
| CATGCAGGATCCCACACCAT+TGG | + | chr5.2:43209696-43209715 | MS.gene053957:intron | 55.0% | |
| CCCACACCATTGGTATGGCA+AGG | + | chr5.2:43209706-43209725 | MS.gene053957:CDS | 55.0% | |
| GAAGTGAAGCCGAACAACCG+AGG | - | chr5.2:43208035-43208054 | None:intergenic | 55.0% | |
| GGGGCGGCATTATTCACCAT+TGG | + | chr5.2:43209318-43209337 | MS.gene053957:intron | 55.0% | |
| GTAACGCAGCCTCGGTTGTT+CGG | + | chr5.2:43208023-43208042 | MS.gene053957:CDS | 55.0% | |
| TGAACCTCGTAACGCAGCCT+CGG | + | chr5.2:43208015-43208034 | MS.gene053957:CDS | 55.0% | |
| TTGTCTCCTCCCCCAATTGG+TGG | - | chr5.2:43209831-43209850 | None:intergenic | 55.0% | |
| ACAACCGAGGCTGCGTTACG+AGG | - | chr5.2:43208022-43208041 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 43207913 | 43210127 | 43207913 | ID=MS.gene053957 |
| chr5.2 | mRNA | 43207913 | 43210127 | 43207913 | ID=MS.gene053957.t1;Parent=MS.gene053957 |
| chr5.2 | exon | 43207913 | 43208072 | 43207913 | ID=MS.gene053957.t1.exon1;Parent=MS.gene053957.t1 |
| chr5.2 | CDS | 43207913 | 43208072 | 43207913 | ID=cds.MS.gene053957.t1;Parent=MS.gene053957.t1 |
| chr5.2 | exon | 43208522 | 43208713 | 43208522 | ID=MS.gene053957.t1.exon2;Parent=MS.gene053957.t1 |
| chr5.2 | CDS | 43208522 | 43208713 | 43208522 | ID=cds.MS.gene053957.t1;Parent=MS.gene053957.t1 |
| chr5.2 | exon | 43208806 | 43208971 | 43208806 | ID=MS.gene053957.t1.exon3;Parent=MS.gene053957.t1 |
| chr5.2 | CDS | 43208806 | 43208971 | 43208806 | ID=cds.MS.gene053957.t1;Parent=MS.gene053957.t1 |
| chr5.2 | exon | 43209703 | 43210127 | 43209703 | ID=MS.gene053957.t1.exon4;Parent=MS.gene053957.t1 |
| chr5.2 | CDS | 43209703 | 43210127 | 43209703 | ID=cds.MS.gene053957.t1;Parent=MS.gene053957.t1 |
| Gene Sequence |
| Protein sequence |
